Citrus Sinensis ID: 038076
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | 2.2.26 [Sep-21-2011] | |||||||
| Q8G4L4 | 446 | Probable spermidine synth | yes | no | 0.466 | 0.360 | 0.268 | 2e-06 |
| >sp|Q8G4L4|SPEE_BIFLO Probable spermidine synthase OS=Bifidobacterium longum (strain NCC 2705) GN=speE PE=3 SV=1 | Back alignment and function desciption |
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Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 89 SKYNDIVIVDTPKSRMLLLDSTYNVHSII--NKGIHKWTGSYWDEFVSLPAIVPNGPIA- 145
S YN + + + +L + + V S+ +KG+ TG Y+D ++ PA+ N A
Sbjct: 144 SIYNYLQVKNLSDRTILSTNVLFGVQSVTMKDKGL---TGMYYDTALAAPALADNANSAL 200
Query: 146 IYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIG 204
I G+G GT A + +P + + G EID+ + D +YF +D+ T G
Sbjct: 201 ILGMGTGTYARQLKQYYPKMNITGVEIDQKITDLAGEYFDEPADIPVTTYDGRAW----- 255
Query: 205 DVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI-DG 262
+ S D +Y I+VD + + + Q+ + +++ L P G +VN I DG
Sbjct: 256 --LAASHD---KYDVIMVDAYQDITIPFQMSSTEFFTMVREHLNPGGVMVVNMNMISDG 309
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Bifidobacterium longum (strain NCC 2705) (taxid: 206672) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| 255572079 | 353 | S-adenosylmethionine-dependent methyltra | 0.837 | 0.818 | 0.673 | 1e-109 | |
| 356528615 | 341 | PREDICTED: uncharacterized protein LOC10 | 0.843 | 0.853 | 0.667 | 1e-108 | |
| 357451177 | 330 | hypothetical protein MTR_2g062700 [Medic | 0.759 | 0.793 | 0.691 | 1e-104 | |
| 224053633 | 357 | predicted protein [Populus trichocarpa] | 0.846 | 0.817 | 0.612 | 1e-104 | |
| 225464726 | 328 | PREDICTED: uncharacterized protein LOC10 | 0.817 | 0.859 | 0.630 | 1e-104 | |
| 145358858 | 333 | S-adenosyl-L-methionine-dependent methyl | 0.782 | 0.810 | 0.622 | 8e-98 | |
| 297794917 | 333 | hypothetical protein ARALYDRAFT_917128 [ | 0.779 | 0.807 | 0.632 | 1e-97 | |
| 449461128 | 334 | PREDICTED: uncharacterized protein LOC10 | 0.756 | 0.781 | 0.647 | 6e-91 | |
| 15241538 | 349 | S-adenosyl-L-methionine-dependent methyl | 0.744 | 0.736 | 0.604 | 1e-90 | |
| 147844430 | 659 | hypothetical protein VITISV_031208 [Viti | 0.768 | 0.402 | 0.585 | 2e-90 |
| >gi|255572079|ref|XP_002526980.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223533671|gb|EEF35407.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/291 (67%), Positives = 232/291 (79%), Gaps = 2/291 (0%)
Query: 52 ASRFRKANATTSSSSSDQYDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTY 111
A++ + ++SSSD Q ++EEEE ++V+TA+RS YNDIVIVDT K+RMLLLDST+
Sbjct: 62 ATKENTSRNNAAASSSDSI-QEREEEEEEYKVLTAMRSSYNDIVIVDTAKARMLLLDSTH 120
Query: 112 NVHSIINKGIHKWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWE 171
NVHSI+NKG KWTGSYWDEF SLPAI+P GPIAI GLG GTAAHLMLDLWPSL+LEGWE
Sbjct: 121 NVHSILNKG-QKWTGSYWDEFASLPAIIPEGPIAILGLGAGTAAHLMLDLWPSLELEGWE 179
Query: 172 IDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVL 231
ID ILIDK R YFGLSDLEKPT GG+L VHI D SP+E+ SG+YAGIV+DLF EGKVL
Sbjct: 180 IDRILIDKARQYFGLSDLEKPTTAGGILNVHIDDALSPTENDSGKYAGIVIDLFCEGKVL 239
Query: 232 PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291
PQL+EVATWLKL RLM NGR M NCGGI+ SD G P+S++ W+ NS I+ LSE
Sbjct: 240 PQLQEVATWLKLNGRLMANGRIMANCGGINEKSDNADGTIHPESIDGTWIENSTIKTLSE 299
Query: 292 AFPGKVSWKRMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPCA 342
AFPG+V+WKRMPE G N+LALTG LPDL+ WS+ VP LSE V++W+PC
Sbjct: 300 AFPGQVNWKRMPETQGANYLALTGPLPDLTLWSSKVPDPLSENVRRWRPCG 350
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528615|ref|XP_003532895.1| PREDICTED: uncharacterized protein LOC100785365 [Glycine max] | Back alignment and taxonomy information |
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Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/301 (66%), Positives = 239/301 (79%), Gaps = 10/301 (3%)
Query: 43 LLLKSHLHSASRFRKANATTS---SSSSDQYDQRQQEEEENFQVVTAVRSKYNDIVIVDT 99
L L +H HS K+NA S S+ Q Q + +EEENFQV+TA+++ YNDI+IVDT
Sbjct: 45 LFLSTHHHS-----KSNAHFSFSVSAQQQQQQQVEADEEENFQVLTALKTDYNDILIVDT 99
Query: 100 PKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLML 159
PKSRMLLLDS+Y+VHSI+ K KWTGSYWDEF SLP IVP GPIAI GLGGGTAAHLML
Sbjct: 100 PKSRMLLLDSSYSVHSILYKE-QKWTGSYWDEFASLPVIVPKGPIAILGLGGGTAAHLML 158
Query: 160 DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219
DLWPSL+L+GWEID+ILIDK RDYFGLSDLEK T GGVL VHIGDVF SED RYAG
Sbjct: 159 DLWPSLQLDGWEIDQILIDKARDYFGLSDLEKTTDNGGVLNVHIGDVFITSEDFHQRYAG 218
Query: 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAA-RPKSMND 278
I+VDLFS+GKVLPQL+EV+TWL+L +RLM NGRFMVNCGG+ G G+ + S ++
Sbjct: 219 IIVDLFSDGKVLPQLQEVSTWLELHERLMANGRFMVNCGGVGGGPSAVDGSTDQETSSDE 278
Query: 279 VWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKW 338
W+ N A++ALS+AFPG+VSWKRMP+ NGENF+ALTG LPDL SWSA+VP LS++VK W
Sbjct: 279 SWLLNPALQALSKAFPGQVSWKRMPKENGENFMALTGPLPDLDSWSASVPSPLSKSVKNW 338
Query: 339 K 339
+
Sbjct: 339 R 339
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451177|ref|XP_003595865.1| hypothetical protein MTR_2g062700 [Medicago truncatula] gi|124360180|gb|ABN08193.1| hypothetical protein MtrDRAFT_AC155884g5v2 [Medicago truncatula] gi|355484913|gb|AES66116.1| hypothetical protein MTR_2g062700 [Medicago truncatula] | Back alignment and taxonomy information |
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Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/269 (69%), Positives = 221/269 (82%), Gaps = 7/269 (2%)
Query: 75 QEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVS 134
+E+EE+FQ++T+V++ YN I+IVDTPKS MLLLDS++NVHSI+ K KWT SYWDEF S
Sbjct: 61 EEDEESFQILTSVKTDYNHIMIVDTPKSTMLLLDSSHNVHSILYKD-KKWTNSYWDEFSS 119
Query: 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTA 194
LPAIVP GPIAI GLGGGTAAHLML+LWP+L+LEGWEID+ILIDK RDYFGLSDLEK
Sbjct: 120 LPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILIDKARDYFGLSDLEKTNE 179
Query: 195 TGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254
GG+L VHIGD F PS+D RYAGIVVDLFS+GKVLPQL+EV+TWL+L DRLM NGRFM
Sbjct: 180 DGGILNVHIGDAFIPSDDLHRRYAGIVVDLFSDGKVLPQLQEVSTWLELHDRLMANGRFM 239
Query: 255 VNCGGIDGVSDMTYGAARPKSM--NDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLA 312
VNCGGIDGV G+ PK + ++ W+ N+AI+AL +AFPG++SWKRMP+ G+NF+A
Sbjct: 240 VNCGGIDGVD----GSTDPKKLSNDEAWLLNAAIKALLKAFPGQLSWKRMPKETGQNFMA 295
Query: 313 LTGLLPDLSSWSAAVPGHLSETVKKWKPC 341
LTG LPDL SWSA VP LS V WKPC
Sbjct: 296 LTGPLPDLKSWSANVPSPLSTGVMDWKPC 324
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053633|ref|XP_002297904.1| predicted protein [Populus trichocarpa] gi|222845162|gb|EEE82709.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/307 (61%), Positives = 232/307 (75%), Gaps = 15/307 (4%)
Query: 51 SASRF-RKANATTSSSSSDQ---YDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLL 106
+ SR +K NA T+++ Q D ++E+EE ++V+TAV+S+YNDI+IVDTPK+RMLL
Sbjct: 50 TCSRLTQKPNAHTTTNLQVQGSSSDSNKEEQEEEYKVLTAVKSQYNDILIVDTPKTRMLL 109
Query: 107 LDSTYNVHSIINKGIHKWTGSYW----------DEFVSLPAIVPNGPIAIYGLGGGTAAH 156
LDST+NVHS++ K KWT SYW DEF SLPAI+P GP+AI+GLGGGTAAH
Sbjct: 110 LDSTHNVHSLLYKDGQKWTRSYWVCMLSPFVMQDEFASLPAIIPQGPVAIFGLGGGTAAH 169
Query: 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216
LMLD+WPSL+LEGWEIDEILI+K RDYFGLSDLEK T GG+L V +GD ED +
Sbjct: 170 LMLDVWPSLQLEGWEIDEILINKARDYFGLSDLEKQTQAGGMLHVVVGDALCSLEDDGRK 229
Query: 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSM 276
YAGIV+DLF GKVLPQL+EVATWL+LK RL+PNGR MVNCGGI+ SD KS+
Sbjct: 230 YAGIVIDLFYGGKVLPQLQEVATWLELKGRLIPNGRLMVNCGGIEE-SDAINERISTKSV 288
Query: 277 NDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVK 336
++ W+ N I+ L EAFPG++SWKR+PE G N+LALTG LPDL+SWSA VP HLS V
Sbjct: 289 DNAWVENPTIKVLCEAFPGQLSWKRVPESEGANYLALTGPLPDLTSWSAMVPVHLSAAVS 348
Query: 337 KWKPCAP 343
KW+PC+P
Sbjct: 349 KWRPCSP 355
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464726|ref|XP_002264202.1| PREDICTED: uncharacterized protein LOC100265576 [Vitis vinifera] gi|296087558|emb|CBI34147.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/295 (63%), Positives = 225/295 (76%), Gaps = 13/295 (4%)
Query: 49 LHSASRFRKANATTSSSSSDQYDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLD 108
H + R T S+S+ Q+E+E+FQV+TA++S+YNDI+I+DTPKSR+LLLD
Sbjct: 45 FHPKVKARAVPEPTGSAST------AQDEQEDFQVLTAIKSEYNDILILDTPKSRLLLLD 98
Query: 109 STYNVHSIINKGIHKWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLE 168
ST+NVHSI NK K TGSYWDEF SLPAIVP GPIAI+GLGGGTAAHL+LDLWPSLKLE
Sbjct: 99 STHNVHSIFNKE-EKRTGSYWDEFASLPAIVPEGPIAIFGLGGGTAAHLLLDLWPSLKLE 157
Query: 169 GWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG 228
GWEIDEILI K R+Y GLSDLEK GG+L VH+GD SP + G +AGI++DLFSEG
Sbjct: 158 GWEIDEILIHKSREYLGLSDLEKHNQAGGILHVHVGDALSPLVNVPGGFAGIIIDLFSEG 217
Query: 229 KVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRA 288
KVLPQL++ TWL LKD+LM NGR MVNCGG D Y +A+ S+N VW+ NS ++A
Sbjct: 218 KVLPQLQQYGTWLILKDKLMANGRLMVNCGGAD------YNSAQISSINGVWVKNSTLKA 271
Query: 289 LSEAFPGKVSWKRMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPCAP 343
L AFPG++SWK+M ER GEN+LALTG PDL SWSA VPG LS V++W+PC P
Sbjct: 272 LCRAFPGQLSWKKMSEREGENYLALTGPFPDLKSWSATVPGWLSSNVEQWRPCGP 326
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358858|ref|NP_199273.2| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332007754|gb|AED95137.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/281 (62%), Positives = 212/281 (75%), Gaps = 11/281 (3%)
Query: 70 YDQRQQEEEE---------NFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKG 120
+D+RQ +++ + VVTAVRS+YN+IVIVDT SR LLLDST NVHS+INKG
Sbjct: 54 HDERQIQQDSAKEEEEEEEEYWVVTAVRSRYNEIVIVDTASSRYLLLDSTKNVHSVINKG 113
Query: 121 IHKWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKV 180
WTGSYWDEF SLP I+PNGP+AIYGLGGGTAA LML+LWP+++LEGWEIDEILI+K
Sbjct: 114 GQNWTGSYWDEFASLPPIIPNGPVAIYGLGGGTAARLMLELWPTMQLEGWEIDEILIEKA 173
Query: 181 RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATW 240
RDY GLS+LEKPT+ GG L VH+ D SPS+D SGRYAGI+VDLF++GKVL QL+EV W
Sbjct: 174 RDYLGLSELEKPTSKGGRLCVHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQEVPIW 233
Query: 241 LKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK 300
L+L RLMPNGR MVNC GI+ +++ G + + M NS ++ LSEAFPG+V WK
Sbjct: 234 LELASRLMPNGRIMVNCAGIE--TELQNGKPQLLLDDSAGMLNSTVKILSEAFPGQVCWK 291
Query: 301 RMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPC 341
R P+ G NFLALTG LPDLS WS+ VP E VK+WK C
Sbjct: 292 RTPDSEGLNFLALTGGLPDLSDWSSKVPVRFCEVVKQWKLC 332
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794917|ref|XP_002865343.1| hypothetical protein ARALYDRAFT_917128 [Arabidopsis lyrata subsp. lyrata] gi|297311178|gb|EFH41602.1| hypothetical protein ARALYDRAFT_917128 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/280 (63%), Positives = 212/280 (75%), Gaps = 11/280 (3%)
Query: 71 DQRQQEEEEN---------FQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGI 121
D+RQ ++E + + VVTAVRS+YN+IVIVDT SR LLLDST NVHS+INKG
Sbjct: 55 DERQIQQEPSKDDDEEEEEYWVVTAVRSRYNEIVIVDTVSSRYLLLDSTKNVHSVINKGG 114
Query: 122 HKWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR 181
WTGSYWDEF SLP I+PNGP+AIYGLGGGTAA L+L+LWPSL+LEGWEIDEILI+K R
Sbjct: 115 QNWTGSYWDEFASLPPIIPNGPVAIYGLGGGTAARLILELWPSLQLEGWEIDEILIEKAR 174
Query: 182 DYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWL 241
DY GLS+LEKPT+ GG L VH+ D SPS+D SGRYAGI+VDLF++GKVL QL++V WL
Sbjct: 175 DYLGLSELEKPTSKGGRLCVHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQQVPIWL 234
Query: 242 KLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR 301
L RLMPNGR MVNC GI+ +++ G + + M NS ++ L+EAFPG+V WKR
Sbjct: 235 DLASRLMPNGRIMVNCAGIE--TELQNGKPQLLLDDSAVMLNSTVKILAEAFPGQVCWKR 292
Query: 302 MPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPC 341
P+ G NFLALTG LPDLS WS VP LSE VK+WK C
Sbjct: 293 TPDTQGLNFLALTGGLPDLSDWSNKVPIRLSEVVKQWKLC 332
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461128|ref|XP_004148295.1| PREDICTED: uncharacterized protein LOC101213378 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 171/264 (64%), Positives = 196/264 (74%), Gaps = 3/264 (1%)
Query: 81 FQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
FQV+TAV S YNDIVIVDTPKSRMLLLDS+YNVHSI+ K WTGSYWDEF SLPAI+P
Sbjct: 71 FQVLTAVTSDYNDIVIVDTPKSRMLLLDSSYNVHSILYKE-QMWTGSYWDEFASLPAIIP 129
Query: 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200
GPIAI GLGGGT AHLML WPSL+LEGWEID ILIDK R++ GLSDLEK +A GG+L
Sbjct: 130 EGPIAILGLGGGTTAHLMLASWPSLQLEGWEIDGILIDKARNFLGLSDLEKHSADGGILN 189
Query: 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260
+HIGD PS SG YAGIV+DLFS GKVLPQL++V WL LKDRLM GR M+NCGG
Sbjct: 190 IHIGDALDPSVRISGGYAGIVIDLFSNGKVLPQLQQVGLWLDLKDRLMVGGRIMINCGG- 248
Query: 261 DGVSDMTYGAARPKSMNDVWM-HNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLPD 319
+ V G S D ++ H S I ALSE FP +V WK++P+ GEN+LALTG P+
Sbjct: 249 NVVHVTENGMCSEVSSTDCFLPHISVIEALSEVFPKQVCWKKLPKEKGENYLALTGPFPE 308
Query: 320 LSSWSAAVPGHLSETVKKWKPCAP 343
L SWSA VP L +VK+W P P
Sbjct: 309 LQSWSAVVPEPLRGSVKEWSPYEP 332
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241538|ref|NP_199272.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|8953757|dbj|BAA98112.1| unnamed protein product [Arabidopsis thaliana] gi|332007753|gb|AED95136.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/281 (60%), Positives = 205/281 (72%), Gaps = 24/281 (8%)
Query: 81 FQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYW----------- 129
F VVTAV+S+YN+IVIVDT SR LLLDST NVHS+INKG WTG+YW
Sbjct: 60 FTVVTAVKSRYNEIVIVDTFASRYLLLDSTRNVHSVINKGGQNWTGAYWVNVVIVFNFES 119
Query: 130 -------DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD 182
DE LP I+PNGPIAIYGLGGGTAA L+L+LWPS +LEGWEIDEILI+K RD
Sbjct: 120 YQHFCLKDESACLPPIIPNGPIAIYGLGGGTAARLILELWPSTELEGWEIDEILIEKARD 179
Query: 183 YFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLK 242
Y GLS+LE PT+ GG L +H+ D SP +D S RYAGI+VDLF++GKVL QL+E+ WL+
Sbjct: 180 YLGLSELEIPTSKGGRLCIHVDDALSPCQDDSKRYAGIIVDLFADGKVLDQLQEIPMWLE 239
Query: 243 LKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMND--VWMHNSAIRALSEAFPGKVSWK 300
L RLMPNGR MVNC GI+ +++ G +P+ + D WM NS ++ LSEAFPG+VSWK
Sbjct: 240 LASRLMPNGRLMVNCAGIE--TEVKNG--KPELVLDDLAWMLNSTVKILSEAFPGQVSWK 295
Query: 301 RMPERNGENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPC 341
R P+ G NF+ALTG LPDLS WS+ VP LSE+VK WK C
Sbjct: 296 RTPDSEGLNFVALTGGLPDLSDWSSKVPVRLSESVKLWKLC 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147844430|emb|CAN82092.1| hypothetical protein VITISV_031208 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/297 (58%), Positives = 207/297 (69%), Gaps = 32/297 (10%)
Query: 49 LHSASRFRKANATTSSSSSDQYDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLD 108
H + R T S+S+ Q+E+E+FQV+TA++S+YNDI+I+DTPKSR+LLLD
Sbjct: 47 FHPKVKARAVPEPTGSAST------AQDEQEDFQVLTAIKSEYNDILILDTPKSRLLLLD 100
Query: 109 ST----------------YNVHSIINKGIHKWTGSYWDEFVSLPAIVPNGPIAIYGLGGG 152
ST YNVHSI NK K TGSYWDEF SLPAIVP GPIAI+GLGGG
Sbjct: 101 STRMLSLTPAFGFFLQVSYNVHSIFNKE-EKRTGSYWDEFASLPAIVPEGPIAIFGLGGG 159
Query: 153 TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED 212
TAAHL+LDLWPSLKLEGWEIDEILI K R+Y GLSDLEK GG+L VH+GD SP +
Sbjct: 160 TAAHLLLDLWPSLKLEGWEIDEILIHKSREYLGLSDLEKHNQAGGILHVHVGDALSPLVN 219
Query: 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAAR 272
G +AGI++DLFSEGKVLPQL++ TWL LKD+LM NGR MVNCGG D Y +A+
Sbjct: 220 VPGGFAGIIIDLFSEGKVLPQLQQYGTWLILKDKLMANGRLMVNCGGAD------YNSAQ 273
Query: 273 PKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLPDLSSWSAAVPG 329
S+N VW A+R + +SWK+M ER GEN+LALTG PDL SWSA VPG
Sbjct: 274 ISSINGVW---EALRGQEKKAKKVLSWKKMSEREGENYLALTGPFPDLKSWSATVPG 327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| TAIR|locus:2152140 | 333 | AT5G44600 "AT5G44600" [Arabido | 0.744 | 0.771 | 0.661 | 1e-91 | |
| TAIR|locus:2152135 | 349 | AT5G44590 "AT5G44590" [Arabido | 0.602 | 0.595 | 0.626 | 8.1e-87 | |
| TAIR|locus:2161997 | 329 | AT5G63100 "AT5G63100" [Arabido | 0.713 | 0.747 | 0.349 | 2.8e-34 | |
| UNIPROTKB|Q47W52 | 311 | CPS_4320 "Spermine/spermidine | 0.486 | 0.540 | 0.269 | 0.00019 | |
| TIGR_CMR|CPS_4320 | 311 | CPS_4320 "spermine/spermidine | 0.486 | 0.540 | 0.269 | 0.00019 |
| TAIR|locus:2152140 AT5G44600 "AT5G44600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 174/263 (66%), Positives = 207/263 (78%)
Query: 81 FQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+ VVTAVRS+YN+IVIVDT SR LLLDST NVHS+INKG WTGSYWDEF SLP I+P
Sbjct: 74 YWVVTAVRSRYNEIVIVDTASSRYLLLDSTKNVHSVINKGGQNWTGSYWDEFASLPPIIP 133
Query: 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200
NGP+AIYGLGGGTAA LML+LWP+++LEGWEIDEILI+K RDY GLS+LEKPT+ GG L
Sbjct: 134 NGPVAIYGLGGGTAARLMLELWPTMQLEGWEIDEILIEKARDYLGLSELEKPTSKGGRLC 193
Query: 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260
VH+ D SPS+D SGRYAGI+VDLF++GKVL QL+EV WL+L RLMPNGR MVNC GI
Sbjct: 194 VHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQEVPIWLELASRLMPNGRIMVNCAGI 253
Query: 261 DGVSDMTYGAARPKSMND--VWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLP 318
+ +++ G +P+ + D M NS ++ LSEAFPG+V WKR P+ G NFLALTG LP
Sbjct: 254 E--TELQNG--KPQLLLDDSAGMLNSTVKILSEAFPGQVCWKRTPDSEGLNFLALTGGLP 309
Query: 319 DLSSWSAAVPGHLSETVKKWKPC 341
DLS WS+ VP E VK+WK C
Sbjct: 310 DLSDWSSKVPVRFCEVVKQWKLC 332
|
|
| TAIR|locus:2152135 AT5G44590 "AT5G44590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 134/214 (62%), Positives = 164/214 (76%)
Query: 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDL 189
DE LP I+PNGPIAIYGLGGGTAA L+L+LWPS +LEGWEIDEILI+K RDY GLS+L
Sbjct: 127 DESACLPPIIPNGPIAIYGLGGGTAARLILELWPSTELEGWEIDEILIEKARDYLGLSEL 186
Query: 190 EKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP 249
E PT+ GG L +H+ D SP +D S RYAGI+VDLF++GKVL QL+E+ WL+L RLMP
Sbjct: 187 EIPTSKGGRLCIHVDDALSPCQDDSKRYAGIIVDLFADGKVLDQLQEIPMWLELASRLMP 246
Query: 250 NGRFMVNCGGIDGVSDMTYGAARPKSMND--VWMHNSAIRALSEAFPGKVSWKRMPERNG 307
NGR MVNC GI+ +++ G +P+ + D WM NS ++ LSEAFPG+VSWKR P+ G
Sbjct: 247 NGRLMVNCAGIE--TEVKNG--KPELVLDDLAWMLNSTVKILSEAFPGQVSWKRTPDSEG 302
Query: 308 ENFLALTGLLPDLSSWSAAVPGHLSETVKKWKPC 341
NF+ALTG LPDLS WS+ VP LSE+VK WK C
Sbjct: 303 LNFVALTGGLPDLSDWSSKVPVRLSESVKLWKLC 336
|
|
| TAIR|locus:2161997 AT5G63100 "AT5G63100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 94/269 (34%), Positives = 146/269 (54%)
Query: 82 QVVTAVRSKYNDIVIVDTPK--------SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFV 133
+ + +S++N I +++ + SR+LLLD+ N+HSI + + T SY+D F
Sbjct: 66 KTIAKFKSRHNYIRVIEVSRKTNHPLAGSRLLLLDNPGNIHSI-SFLLKTLTDSYFDVFA 124
Query: 134 SLPAIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKP 192
+LP I+P GPI I G G G+ A L+L+L+P + + GWE+D +ID R++FGLS LE+
Sbjct: 125 TLPPIIPPGPIGILGFGAGSTARLILELYPPEIAVHGWELDPSVIDVGREFFGLSKLERD 184
Query: 193 TATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGR 252
+ ++IGD + S ++GI+VDLFS+G V+ +L++ W LK RL GR
Sbjct: 185 HKDR--IFINIGDALNASVKTG--FSGILVDLFSKGSVIKELQDPQVWEDLKSRLRYRGR 240
Query: 253 FMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLA 312
MVN GG V A + + +R +S+ F K+ + N ++ +A
Sbjct: 241 IMVNVGG-KCVE------AEDSDRDGALVMEETLRVMSQVFGDKLFVLTLGNGN-DSSVA 292
Query: 313 LTGLLPDLSSWSAAVP-GHLSETVKKWKP 340
LTG LPDL +W +P L V W P
Sbjct: 293 LTGDLPDLDAWKKRLPRSELRSYVDMWIP 321
|
|
| UNIPROTKB|Q47W52 CPS_4320 "Spermine/spermidine synthase family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 49/182 (26%), Positives = 83/182 (45%)
Query: 82 QVVTAVRSKYNDIVIVDTPKSRMLLLD--STYNVHSIINKGI-HKWTGSYWDEFVSLPAI 138
+V+ + RS Y +I++ D R L + ST S + K + +Y + ++ +
Sbjct: 26 EVIHSERSLYRNILVEDNGDLRCLKFNVKSTKTRQSCLLKSQPQQLVFNYTKQLLTGLLV 85
Query: 139 VPNGP-IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--SDLEKPTAT 195
P I I GLGGGT ++ + L P ++ EIDE +I R YFG +D K +
Sbjct: 86 NPEPKHILIIGLGGGTMSNTLHQLLPDSYIDNVEIDESVIKVARQYFGFLENDQIKTYSQ 145
Query: 196 GGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM-PNGRFM 254
G +V + ++ Y I++D F+ G +P+ +L+ RL+ P G
Sbjct: 146 DG--RVFVKRALLKKQE----YDWIILDAFN-GDYIPEHLMTKEYLEETKRLLSPQGILT 198
Query: 255 VN 256
N
Sbjct: 199 AN 200
|
|
| TIGR_CMR|CPS_4320 CPS_4320 "spermine/spermidine synthase family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 49/182 (26%), Positives = 83/182 (45%)
Query: 82 QVVTAVRSKYNDIVIVDTPKSRMLLLD--STYNVHSIINKGI-HKWTGSYWDEFVSLPAI 138
+V+ + RS Y +I++ D R L + ST S + K + +Y + ++ +
Sbjct: 26 EVIHSERSLYRNILVEDNGDLRCLKFNVKSTKTRQSCLLKSQPQQLVFNYTKQLLTGLLV 85
Query: 139 VPNGP-IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--SDLEKPTAT 195
P I I GLGGGT ++ + L P ++ EIDE +I R YFG +D K +
Sbjct: 86 NPEPKHILIIGLGGGTMSNTLHQLLPDSYIDNVEIDESVIKVARQYFGFLENDQIKTYSQ 145
Query: 196 GGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM-PNGRFM 254
G +V + ++ Y I++D F+ G +P+ +L+ RL+ P G
Sbjct: 146 DG--RVFVKRALLKKQE----YDWIILDAFN-GDYIPEHLMTKEYLEETKRLLSPQGILT 198
Query: 255 VN 256
N
Sbjct: 199 AN 200
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 345 303 0.00097 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 625 (66 KB)
Total size of DFA: 232 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.66u 0.09s 22.75t Elapsed: 00:00:01
Total cpu time: 22.66u 0.09s 22.75t Elapsed: 00:00:01
Start: Fri May 10 13:34:46 2013 End: Fri May 10 13:34:47 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 345 | |||
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 9e-05 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-05
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 10/116 (8%)
Query: 148 GLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207
G G G P ++ G E+D R L+ L +V +GD
Sbjct: 8 GAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRV------RVVVGDAR 61
Query: 208 SPSEDASGRYAGIVVDL-FSEGKVLPQLEEVATWL---KLKDRLMPNGRFMVNCGG 259
E G + ++ + + P+ L P G +V
Sbjct: 62 ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| PRK04457 | 262 | spermidine synthase; Provisional | 100.0 | |
| PLN02823 | 336 | spermine synthase | 99.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.97 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.97 | |
| PLN02366 | 308 | spermidine synthase | 99.97 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.96 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.95 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.95 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 99.93 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.93 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.66 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.62 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 99.61 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.44 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.42 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.41 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.4 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.37 | |
| PLN02476 | 278 | O-methyltransferase | 99.36 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.32 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.32 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.31 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.31 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.31 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.29 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.29 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.29 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.28 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.28 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.28 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.27 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.26 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.26 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.25 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.22 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.22 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.21 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.21 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.2 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.2 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.19 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.19 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.19 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.19 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.19 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.18 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.18 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.17 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.17 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.17 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.15 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.15 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.14 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.14 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.13 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.13 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.13 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.12 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.11 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.11 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.1 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.09 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.09 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.09 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.09 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.09 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.08 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.07 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.06 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.06 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.06 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.03 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.03 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.02 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.02 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.02 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.02 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.02 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.01 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.0 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.0 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.0 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.99 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.99 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.98 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.98 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.98 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.98 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.97 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.96 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.95 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.94 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.93 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.93 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.93 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.92 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.92 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.91 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.91 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.91 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.9 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.89 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.89 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.89 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.88 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.88 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.86 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.84 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.82 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.81 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.81 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.79 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.79 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.79 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.78 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.78 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.77 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.77 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.76 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.76 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.75 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.74 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.73 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.72 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.72 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.7 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.7 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.68 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.68 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.67 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.66 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.66 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.66 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.64 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.63 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.59 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.54 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.54 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.54 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.53 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.5 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.49 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.49 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.49 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.47 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.46 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.46 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.46 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.45 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.44 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.44 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.43 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.43 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.42 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.41 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.41 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.4 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.38 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.37 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.34 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.33 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.31 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.31 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.3 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.25 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.21 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.17 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.16 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.15 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.13 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.13 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.11 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.1 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.09 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.06 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.05 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.02 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.01 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.95 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.93 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.91 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.9 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.89 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.89 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.85 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.84 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 97.8 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.78 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.78 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.72 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.71 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.7 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.67 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.63 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.61 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.59 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.59 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.58 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.53 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.52 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.51 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.48 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.46 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.46 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.34 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.33 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.32 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.32 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.24 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.24 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.24 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.19 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.18 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.13 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.12 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.11 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.1 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.08 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.97 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.94 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.93 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.78 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.77 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.64 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.64 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 96.45 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.42 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.42 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.4 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.4 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.35 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 96.34 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.18 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.16 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.15 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.11 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.05 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.0 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.99 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.97 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.96 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.94 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.79 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.58 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.57 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.25 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.15 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.13 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.07 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.9 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 94.74 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.66 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 94.48 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.47 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 94.44 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.34 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.33 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.29 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 94.17 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 94.12 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.97 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.56 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 93.26 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 92.93 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.86 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 92.83 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 92.81 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 92.77 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.77 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.76 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.7 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 92.52 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.47 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 92.44 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.42 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.01 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 91.85 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.85 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 91.8 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.76 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.59 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 91.29 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 91.26 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 91.24 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.14 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 91.11 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 91.09 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.98 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.97 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.81 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.53 | |
| PHA01634 | 156 | hypothetical protein | 90.44 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.42 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.38 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 90.27 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 90.26 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 90.25 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 90.15 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.14 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 90.09 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 89.93 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.57 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 89.38 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.31 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 89.08 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 89.02 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 88.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 88.93 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.83 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 88.78 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.71 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 88.71 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 88.56 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 88.47 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.37 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 88.35 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 88.14 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 88.12 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.12 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 88.07 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.71 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.62 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 87.47 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 87.39 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.06 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 86.85 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.84 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 86.75 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.61 | |
| PLN02256 | 304 | arogenate dehydrogenase | 86.53 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 86.43 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 86.27 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 86.22 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.86 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 85.79 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 85.66 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 85.62 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 85.54 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 85.48 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 85.43 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.4 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 85.39 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 85.34 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.3 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 85.24 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 85.14 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 84.9 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.88 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 84.76 | |
| PLN02712 | 667 | arogenate dehydrogenase | 84.71 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 84.6 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 84.57 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 84.17 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 84.13 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 83.96 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 83.85 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 83.82 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 83.39 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.28 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 83.14 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 82.97 | |
| PLN02494 | 477 | adenosylhomocysteinase | 82.9 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 82.89 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 82.75 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 82.75 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 82.74 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 82.64 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 82.45 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 82.41 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 82.12 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 82.09 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 81.93 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 81.8 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 81.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 81.66 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.31 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 81.21 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 80.65 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 80.44 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 80.34 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 80.26 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 80.26 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 80.26 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 80.22 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.19 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 80.16 |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=268.10 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=180.4
Q ss_pred EeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhcc-ccCCCCCEEEEeecccHHHHHHHHhCCC
Q 038076 86 AVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLP-AIVPNGPIAIYGLGGGTAAHLMLDLWPS 164 (345)
Q Consensus 86 ~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~-~~~~p~~VLiIG~G~G~~~~~l~~~~p~ 164 (345)
-.++.||.|.|+|+++.|+|.||+...||.+...+|..+.+.|++.|+... ...++++||+||+|+|++++++++.+|+
T Consensus 11 ~~~~~~~~i~v~e~~~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~ 90 (262)
T PRK04457 11 PAKAGFPEVGVSEEGGVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD 90 (262)
T ss_pred cccccCCCcEEEecCCEEEEEECCCcceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC
Confidence 456789999999999999999999888999999999999999999986543 3456889999999999999999999999
Q ss_pred CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHH
Q 038076 165 LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLK 244 (345)
Q Consensus 165 ~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~ 244 (345)
.+|++|||||+|+++|+++|+.++ .++|++++++|+++++...+++||+|++|.|+...+|.++.+.+|++.++
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~------~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~ 164 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPE------NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCR 164 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCC------CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHH
Confidence 999999999999999999998764 26899999999999998777899999999998777788899999999999
Q ss_pred hccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecCCCCceEEEEeCC-CC
Q 038076 245 DRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGL-LP 318 (345)
Q Consensus 245 ~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~~~n~v~~a~~-~p 318 (345)
++|+|||++++|++..+. .....+++++++|++.+.+++. ...+|+++++.+ .|
T Consensus 165 ~~L~pgGvlvin~~~~~~------------------~~~~~l~~l~~~F~~~~~~~~~--~~~~N~v~~a~~~~~ 219 (262)
T PRK04457 165 NALSSDGIFVVNLWSRDK------------------RYDRYLERLESSFEGRVLELPA--ESHGNVAVFAFKSAP 219 (262)
T ss_pred HhcCCCcEEEEEcCCCch------------------hHHHHHHHHHHhcCCcEEEEec--CCCccEEEEEECCCC
Confidence 999999999999987654 3578899999999976776544 345688888865 35
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=251.75 Aligned_cols=215 Identities=20% Similarity=0.203 Sum_probs=170.8
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|++++. .|.|++|+.. |++.. ..+.|++.|++.+.+ ..|++||+||+|+|.+++
T Consensus 47 ~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~-qs~~~------de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~r 119 (336)
T PLN02823 47 VNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKM-QSAEA------DEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAR 119 (336)
T ss_pred eccEEEeccCCCeEEEEEECCCCceEEEECCcc-ccccc------hHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHH
Confidence 4579999999999999999976 7889998865 43311 234688877766644 568899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCC--CCCCCc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG--KVLPQL 234 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~--~~p~~l 234 (345)
+++++.+..+|++|||||+|+++|++||.... ....+||++++++||+.|++..+++||+||+|++++. .++.+|
T Consensus 120 e~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~---~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~L 196 (336)
T PLN02823 120 EVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR---EAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQL 196 (336)
T ss_pred HHHhCCCCCeEEEEECCHHHHHHHHHhccccc---ccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhh
Confidence 99987677899999999999999999997542 1245899999999999999888889999999998753 345679
Q ss_pred chHHHHH-HHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEE
Q 038076 235 EEVATWL-KLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFL 311 (345)
Q Consensus 235 ~t~ef~~-~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v 311 (345)
+|.|||+ .++++|+|||++++|..+.... ........++++++++|+ .|..+. +|.-.+.+-+
T Consensus 197 yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~-------------~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~~w~f 262 (336)
T PLN02823 197 YTKSFYERIVKPKLNPGGIFVTQAGPAGIL-------------THKEVFSSIYNTLRQVFK-YVVPYTAHVPSFADTWGW 262 (336)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEeccCcchh-------------ccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCCceEE
Confidence 9999999 9999999999999997754320 001568899999999999 565554 4543333446
Q ss_pred EEeCCCC
Q 038076 312 ALTGLLP 318 (345)
Q Consensus 312 ~~a~~~p 318 (345)
+++++.|
T Consensus 263 ~~aS~~~ 269 (336)
T PLN02823 263 VMASDHP 269 (336)
T ss_pred EEEeCCc
Confidence 6677665
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=245.32 Aligned_cols=212 Identities=23% Similarity=0.252 Sum_probs=168.2
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|+++.. .|.+.+|+.. |. . + .....|++.|++.|.+ .+|++||+||+|+|..+++
T Consensus 21 ~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~-q~-~---e--~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~e 93 (246)
T PF01564_consen 21 EEVLYEEKSPYQHIEIFESSPFGRILVLDGDV-QL-S---E--RDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARE 93 (246)
T ss_dssp EEEEEEEEESSSEEEEEEETTTEEEEEETTEE-EE-E---T--TTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHH
T ss_pred EEEEEccCCCCCcEEEEEecCcCcEEEECCeE-EE-E---E--echHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhh
Confidence 369999999999999999965 6888899864 22 1 1 2245798888877754 5799999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC-cccEEEEcCCCCCCCCCCcch
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-RYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-~yD~Ii~D~f~~~~~p~~l~t 236 (345)
++++.+..+|++|||||.|+++|++||+.... ...+||++++++||+.|+++..+ +||+|++|++++...+..+++
T Consensus 94 ll~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~---~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (246)
T PF01564_consen 94 LLKHPPVESITVVEIDPEVVELARKYFPEFSE---GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFT 170 (246)
T ss_dssp HTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT---TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSS
T ss_pred hhhcCCcceEEEEecChHHHHHHHHhchhhcc---ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccC
Confidence 99876678999999999999999999964321 14689999999999999998877 999999999997666666999
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCc-eEEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGE-NFLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~-n~v~~ 313 (345)
.|||+.++++|+|||++++|..+...+ ....+.+.++++++|+ .+..+. +|.-.+. ..++.
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~~~~~~~---------------~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQAGSPFLH---------------PELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEETTTT---------------HHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEEEccCcccc---------------hHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEEE
Confidence 999999999999999999999655542 2568899999999999 665544 4543333 44666
Q ss_pred eCCCC
Q 038076 314 TGLLP 318 (345)
Q Consensus 314 a~~~p 318 (345)
+++.+
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 66654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=241.29 Aligned_cols=213 Identities=20% Similarity=0.195 Sum_probs=169.8
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|+++.+ .|.|.+|+.. |++. ...+.|++.+.+.|.+ .+|++||+||||+|.+++
T Consensus 20 ~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~-q~~~------~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 20 VKKVLYEEKSPFQRIEIFETPEFGRLLALDGCV-MTTE------RDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLR 92 (283)
T ss_pred eccEEEEcCCCCeeEEEEEcCCccEEEEECCee-eecC------cchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHH
Confidence 4579999999999999999976 6999999875 3321 2246788877766654 578999999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcch
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
+++++.+..+|++|||||+|+++|+++|... ......+||++++++|++.|++..+++||+|++|++++..++.++++
T Consensus 93 ~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~--~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (283)
T PRK00811 93 EVLKHPSVEKITLVEIDERVVEVCRKYLPEI--AGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFT 170 (283)
T ss_pred HHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh--ccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhH
Confidence 9998656689999999999999999998521 11123489999999999999987778999999999887666678999
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCc-eEEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGE-NFLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~-n~v~~ 313 (345)
.|||+.++++|+|||++++|..+...+ ...+..+.++|+++|+ +|..+. +|...++ ..+++
T Consensus 171 ~ef~~~~~~~L~~gGvlv~~~~~~~~~---------------~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~~ 234 (283)
T PRK00811 171 KEFYENCKRALKEDGIFVAQSGSPFYQ---------------ADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTF 234 (283)
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCcccC---------------HHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeEE
Confidence 999999999999999999987765431 1468899999999999 565444 3443333 33567
Q ss_pred eCCC
Q 038076 314 TGLL 317 (345)
Q Consensus 314 a~~~ 317 (345)
+++.
T Consensus 235 as~~ 238 (283)
T PRK00811 235 ASKN 238 (283)
T ss_pred eecC
Confidence 7763
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=241.58 Aligned_cols=211 Identities=19% Similarity=0.246 Sum_probs=168.4
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l 158 (345)
+++++.+|+||+|.|+|+.. .|.|.+|+.. |. .++. ++.|.+.|.++|.. .+|++||+||||+|.+++++
T Consensus 37 ~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~-q~----~~~d--e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 37 KVLFQGKSDFQDVLVFESATYGKVLVLDGVI-QL----TERD--ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred eEEEeccCCCeeEEEEEcCCCceEEEECCEe-ee----cCcc--HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence 69999999999999999976 6999999974 22 2222 46788877776653 67899999999999999999
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
+++.+..+|++|||||+|+++|+++|.... ....+||++++++||+.|+++. +++||+||+|++++..++.++++.
T Consensus 110 lk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~---~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ 186 (308)
T PLN02366 110 ARHSSVEQIDICEIDKMVIDVSKKFFPDLA---VGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEK 186 (308)
T ss_pred HhCCCCCeEEEEECCHHHHHHHHHhhhhhc---cccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHH
Confidence 987445899999999999999999995321 1245899999999999999765 578999999999887667789999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCCCc-eEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERNGE-NFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~~~-n~v~~a 314 (345)
+||+.++++|+|||++++|..+.-.+ ....+.++++|+++|+..+.++ .+|.-.++ ..++++
T Consensus 187 ef~~~~~~~L~pgGvlv~q~~s~~~~---------------~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~a 251 (308)
T PLN02366 187 PFFESVARALRPGGVVCTQAESMWLH---------------MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLC 251 (308)
T ss_pred HHHHHHHHhcCCCcEEEECcCCcccc---------------hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEE
Confidence 99999999999999999887654331 1568899999999996466544 45544333 446666
Q ss_pred CCC
Q 038076 315 GLL 317 (345)
Q Consensus 315 ~~~ 317 (345)
++.
T Consensus 252 s~~ 254 (308)
T PLN02366 252 SKE 254 (308)
T ss_pred ECC
Confidence 654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-29 Score=239.45 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=171.4
Q ss_pred cCceEEEEeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHH
Q 038076 79 ENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 79 ~~~~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~ 156 (345)
...+++++.+|+||+|.|+|+++. .|++||.. |.+. .-++.|++.+.+.+. ...|++||+||||+|..++
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~-~L~LDG~~-Q~se------~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlr 166 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI-RLYLDKQL-QFSS------VDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALR 166 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE-EEEECCee-cccc------ccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHH
Confidence 344799999999999999999876 69999975 2221 113458887766553 3678999999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCC-CCCCcc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK-VLPQLE 235 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~-~p~~l~ 235 (345)
+++++.+..+|++|||||+|+++|++++.++..++....+||++++++||++|++..+++||+||+|++++.. ....++
T Consensus 167 elLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~Ly 246 (374)
T PRK01581 167 EVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLY 246 (374)
T ss_pred HHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhh
Confidence 9998766789999999999999999987776555555679999999999999998878899999999987643 356799
Q ss_pred hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEEEE
Q 038076 236 EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFLAL 313 (345)
Q Consensus 236 t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v~~ 313 (345)
+.|||+.|+++|+|||+++++..++..+ ...+..+.++++++|+ .+..+. +|...+...+++
T Consensus 247 T~EFy~~~~~~LkPgGV~V~Qs~sp~~~---------------~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 247 TSELFARIATFLTEDGAFVCQSNSPADA---------------PLVYWSIGNTIEHAGL-TVKSYHTIVPSFGTDWGFHI 310 (374)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCChhhh---------------HHHHHHHHHHHHHhCC-ceEEEEEecCCCCCceEEEE
Confidence 9999999999999999999886544331 1355778999999999 444333 455444456777
Q ss_pred eCCCCC
Q 038076 314 TGLLPD 319 (345)
Q Consensus 314 a~~~p~ 319 (345)
+++.|.
T Consensus 311 as~~~~ 316 (374)
T PRK01581 311 AANSAY 316 (374)
T ss_pred EeCCcc
Confidence 776653
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=228.41 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=161.7
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|.|+.|.++++.. .+.|.+|+.. |.+ ....+.|...+.+.|.+ +.|++||+||+|.|.++++
T Consensus 21 ~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~-q~~------e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRe 93 (282)
T COG0421 21 ERVLYEEKSEYQDIEIFESEDFGKVLVLDGVV-QLT------ERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLRE 93 (282)
T ss_pred eeeeeeccCCceEEEEEeccccceEEEecChh-hhc------cchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHH
Confidence 358999999999999999654 7888999865 221 12234576555555543 5668999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..++++|||||.|+++||+||+..... . .|||++++++||++|+++..++||+||+|.+++.++...|+|.
T Consensus 94 vlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~ 170 (282)
T COG0421 94 VLKHLPVERITMVEIDPAVIELARKYLPEPSGG--A-DDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTE 170 (282)
T ss_pred HHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--c-CCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCH
Confidence 999988899999999999999999999865421 2 2899999999999999988889999999999986555779999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCC-EEEEEecCCCCc
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGK-VSWKRMPERNGE 308 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~-v~~~~~~~~~~~ 308 (345)
|||+.|+++|+|+|++++|..++..+ ........+.++++|+.. .+...+|.-.++
T Consensus 171 eFy~~~~~~L~~~Gi~v~q~~~~~~~---------------~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g 227 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQAGSPFLQ---------------DEEIALAYRNVSRVFSIVPPYVAPIPTYPSG 227 (282)
T ss_pred HHHHHHHHhcCCCcEEEEecCCcccc---------------hHHHHHHHHHHHhhccccccceeccceecCC
Confidence 99999999999999999996653331 135678899999999832 233446655555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=242.15 Aligned_cols=215 Identities=21% Similarity=0.190 Sum_probs=163.0
Q ss_pred cCceEEEEeeCCCCcEEEEEeC----CeEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeeccc
Q 038076 79 ENFQVVTAVRSKYNDIVIVDTP----KSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGG 152 (345)
Q Consensus 79 ~~~~ll~~~~s~yg~I~V~e~~----~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G 152 (345)
...+++++++|+||+|.|.+++ +.+.|.+|+....+. . + +..|++.+...+. ..++++||+||+|+|
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~---~--d--e~~y~e~l~~~~l~~~~~~~rVL~IG~G~G 309 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSS---R--D--EYRYHEALVHPAMAASARPRRVLVLGGGDG 309 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccC---c--c--HHHHHHHHHHHHHhhCCCCCeEEEEcCCcc
Confidence 4567999999999999999963 348999999752111 1 1 2457766554332 256889999999999
Q ss_pred HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCC-C
Q 038076 153 TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKV-L 231 (345)
Q Consensus 153 ~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~-p 231 (345)
..+++++++.+..+|++|||||+|++.|++++.+++.++...++||++++++|+++|++..+++||+|++|.+++... +
T Consensus 310 ~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~ 389 (521)
T PRK03612 310 LALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPAL 389 (521)
T ss_pred HHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcch
Confidence 999999975334899999999999999999766555443445689999999999999987788999999998776433 3
Q ss_pred CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCCCEEEEE--ecCCCCc
Q 038076 232 PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPGKVSWKR--MPERNGE 308 (345)
Q Consensus 232 ~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~~v~~~~--~~~~~~~ 308 (345)
.++++.||++.++++|+|||++++|..++..+ ...+.++.++++++ | .+.-+. +|. .+.
T Consensus 390 ~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~i~~~l~~~gf--~v~~~~~~vps-~g~ 451 (521)
T PRK03612 390 GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA---------------PKAFWSIEATLEAAGL--ATTPYHVNVPS-FGE 451 (521)
T ss_pred hccchHHHHHHHHHhcCCCeEEEEecCCcccc---------------hHHHHHHHHHHHHcCC--EEEEEEeCCCC-cch
Confidence 57999999999999999999999997655431 15678999999999 8 333232 343 234
Q ss_pred eEEEEeCCCC
Q 038076 309 NFLALTGLLP 318 (345)
Q Consensus 309 n~v~~a~~~p 318 (345)
.-++++++.+
T Consensus 452 w~f~~as~~~ 461 (521)
T PRK03612 452 WGFVLAGAGA 461 (521)
T ss_pred hHHHeeeCCC
Confidence 4466665553
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=215.52 Aligned_cols=210 Identities=19% Similarity=0.208 Sum_probs=165.3
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|+++.. .|.|.+|+.. |++ ...++.|++.+..++.+ ..|++||+||+|+|.+++.
T Consensus 17 ~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~-q~~------~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ 89 (270)
T TIGR00417 17 KKVLYHEKSEFQDLEIFETEEFGNVLVLDGVV-QTT------ERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLRE 89 (270)
T ss_pred eeEEEEccCCCeeEEEEEcCCCceEEEECCcc-ccc------CchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHH
Confidence 469999999999999999976 6999999875 333 12346788877766543 4678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..++++||+|+++++.|+++|.... ....+++++++++|+++|++..+++||+|++|.+++......+++.
T Consensus 90 ll~~~~~~~v~~veid~~vi~~a~~~~~~~~---~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ 166 (270)
T TIGR00417 90 VLKHKSVEKATLVDIDEKVIELSKKFLPSLA---GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTK 166 (270)
T ss_pred HHhCCCcceEEEEeCCHHHHHHHHHHhHhhc---ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHH
Confidence 9887657899999999999999999984321 1235789999999999999887889999999998765556678999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCC-CceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERN-GENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~-~~n~v~~a 314 (345)
+|++.++++|+|||+++++..+... ....++.+.++++++|+ .+..+. +|.-. +...++++
T Consensus 167 ef~~~~~~~L~pgG~lv~~~~~~~~---------------~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~a 230 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQSESPWI---------------QLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIG 230 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcCCCccc---------------CHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEE
Confidence 9999999999999999998544332 12568889999999999 454333 44322 33456666
Q ss_pred CC
Q 038076 315 GL 316 (345)
Q Consensus 315 ~~ 316 (345)
++
T Consensus 231 s~ 232 (270)
T TIGR00417 231 SK 232 (270)
T ss_pred EC
Confidence 65
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=209.32 Aligned_cols=226 Identities=17% Similarity=0.162 Sum_probs=176.5
Q ss_pred chhhhhhhhccCceEEEEeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhcc--ccCCCCCEEE
Q 038076 69 QYDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLP--AIVPNGPIAI 146 (345)
Q Consensus 69 ~~~~~~~~~~~~~~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~--~~~~p~~VLi 146 (345)
-.+...++.-.+.++|+..+|+||+|.|.+.++.+.|++|++.+.++-+ +..|++.+..-+ .....++||+
T Consensus 223 rit~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLv 295 (508)
T COG4262 223 RITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLV 295 (508)
T ss_pred ceeehHHHHhhcCceeeeccCccceEEEEEecCceEEEEcCceeeeech-------hhhhhheeeecccccccccceEEE
Confidence 3344455556778899999999999999999999999999998555432 234766443222 2246789999
Q ss_pred EeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCC
Q 038076 147 YGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFS 226 (345)
Q Consensus 147 IG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~ 226 (345)
||+|.|-..++++++..-.+|+-||+||.|++.+++..-+...+.++..|||++++.+||.+|++...+.||.||+|+.+
T Consensus 296 lGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D 375 (508)
T COG4262 296 LGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD 375 (508)
T ss_pred EcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC
Confidence 99999999999998533589999999999999999776666666678899999999999999999999999999999999
Q ss_pred CCCC-CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE--EEEec
Q 038076 227 EGKV-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS--WKRMP 303 (345)
Q Consensus 227 ~~~~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~--~~~~~ 303 (345)
+..+ ...+|+.|||..++++|+++|.++++..++-..+ ..+..+.+|++++=- .+. ..-+|
T Consensus 376 P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp---------------~vfw~i~aTik~AG~-~~~Pyhv~VP 439 (508)
T COG4262 376 PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP---------------RVFWRIDATIKSAGY-RVWPYHVHVP 439 (508)
T ss_pred CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC---------------ceeeeehhHHHhCcc-eeeeeEEecC
Confidence 8764 3669999999999999999999999988776532 357788899988731 222 11245
Q ss_pred CCCCceEEEEeCCCC
Q 038076 304 ERNGENFLALTGLLP 318 (345)
Q Consensus 304 ~~~~~n~v~~a~~~p 318 (345)
. -++.-++++++.+
T Consensus 440 T-FGeWGf~l~~~~~ 453 (508)
T COG4262 440 T-FGEWGFILAAPGD 453 (508)
T ss_pred c-ccccceeeccccc
Confidence 3 3445567776654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=204.66 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=150.2
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l 158 (345)
+++++.+|+||+|.|+|+.. +|.|.+| .. |. .. .-++.|++.+.+.|.. ++|++||+||+|.|..++++
T Consensus 19 ~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~-~~--te----~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REv 90 (262)
T PRK00536 19 AKLLDVRSEHNILEIFKSKDFGEIAMLN-KQ-LL--FK----NFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQL 90 (262)
T ss_pred EEEEccCCCCcEEEEEEccccccEEEEe-ee-ee--ec----chhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHH
Confidence 58999999999999999865 7999999 32 32 11 2356787777766654 68899999999999999999
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVA 238 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~e 238 (345)
+++ |. +|+.||||++|++++|+||..- . .+.+|||++++.. +.+...++||+||+|.. ++.+
T Consensus 91 Lkh-~~-~v~mVeID~~Vv~~~k~~lP~~--~-~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~---------~~~~ 152 (262)
T PRK00536 91 FKY-DT-HVDFVQADEKILDSFISFFPHF--H-EVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE---------PDIH 152 (262)
T ss_pred HCc-CC-eeEEEECCHHHHHHHHHHCHHH--H-HhhcCCCEEEeeh----hhhccCCcCCEEEEcCC---------CChH
Confidence 986 54 9999999999999999998632 1 2478999999972 33334578999999952 4579
Q ss_pred HHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecC-CCCceEEEEeCCC
Q 038076 239 TWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPE-RNGENFLALTGLL 317 (345)
Q Consensus 239 f~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~-~~~~n~v~~a~~~ 317 (345)
||+.|+++|+|||+++++..++..+ ...++.+.++++++|+ .|..|.... ..+.+.++++++.
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~sp~~~---------------~~~~~~i~~~l~~~F~-~v~~y~~~vp~~g~wgf~~aS~~ 216 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAKHPLLE---------------HVSMQNALKNMGDFFS-IAMPFVAPLRILSNKGYIYASFK 216 (262)
T ss_pred HHHHHHHhcCCCcEEEECCCCcccC---------------HHHHHHHHHHHHhhCC-ceEEEEecCCCcchhhhheecCC
Confidence 9999999999999999887765542 1568999999999999 555444322 1244557777765
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=128.65 Aligned_cols=111 Identities=20% Similarity=0.328 Sum_probs=88.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
|..+||+||||+|.++.++++.+|+.+|++||+||++++.|++.+.... ..++++++++|+ .+.....++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG------LSDRITFVQGDA-EFDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT------TTTTEEEEESCC-HGGTTTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECcc-ccCcccCCCCCE
Confidence 4678999999999999999997899999999999999999999982111 268999999999 544456778999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+++.+........-...++++.++++|+|||+++++.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99976211112211234678999999999999999875
|
... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-16 Score=153.10 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=141.1
Q ss_pred CCCcccchHHHHHhhc-ccc--------CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC
Q 038076 120 GIHKWTGSYWDEFVSL-PAI--------VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE 190 (345)
Q Consensus 120 ~p~~l~~~Y~~~~~~l-~~~--------~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~ 190 (345)
...++...|+..|.+. +.. .....+|++|.|+|.++.++...+|..++++|||||+|++.|+.||++..
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q-- 343 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ-- 343 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--
Confidence 3347788898877543 222 23578999999999999999988999999999999999999999999875
Q ss_pred CCCCCCCcEEEEEccccccccc------CCCcccEEEEcCCCCCC-----CCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 191 KPTATGGVLQVHIGDVFSPSED------ASGRYAGIVVDLFSEGK-----VLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 191 ~~~~~~~rv~v~~gDa~~~l~~------~~~~yD~Ii~D~f~~~~-----~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..|.++++.||..|+++ .+..||++++|+.+.+. +|+.+.+.++++.++..|.|.|++++|+..
T Consensus 344 -----~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 344 -----SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred -----hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 34899999999999875 35689999999877642 456688999999999999999999999998
Q ss_pred CCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecCCCCceEEEEeCCCC
Q 038076 260 IDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLP 318 (345)
Q Consensus 260 ~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~~~n~v~~a~~~p 318 (345)
++. .+..++...|+++|+ +.+.+.+.+ ..|.++++...|
T Consensus 419 r~~-----------------~~~~~~~~~l~~vf~-~l~~~~~~~--~~N~il~~~~~~ 457 (482)
T KOG2352|consen 419 RNS-----------------SFKDEVLMNLAKVFP-QLYHHQLEE--DVNEILIGQMPP 457 (482)
T ss_pred CCc-----------------chhHHHHHhhhhhhH-HHhhhhccC--CCceeEEeecCh
Confidence 886 467899999999999 565445544 677777776554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=142.24 Aligned_cols=209 Identities=16% Similarity=0.133 Sum_probs=156.7
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~~l 158 (345)
++++..+|.|+.+.|.++.. .+.|.+|+.. +. +..-.+.|.+.++.+|. .++|++||+||+|.|...+..
T Consensus 67 ~vl~~ekS~~qdvlvf~s~tyg~vlvlDgvi--ql-----te~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrev 139 (337)
T KOG1562|consen 67 KVLHDEKSDSQDVLVFESATYGKVLVLDGVI--QL-----TERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREV 139 (337)
T ss_pred eecccCchhHHHHHHHHHhhhheeeeeCCee--eC-----CccccccceeeeeccccccCCCCCeEEEEecCCccceeee
Confidence 58888999999999999754 5667888753 11 12335678777777775 368999999999999999988
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
.++..-..|+.+|||..|++..++|+.--.. .+.++++.++.|||..|++.. .++||+||.|..++..+...++..
T Consensus 140 ikH~~ve~i~~~eiD~~Vie~sk~y~p~la~---gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 140 IKHKSVENILLCEIDENVIESSKQYLPTLAC---GYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred eccccccceeeehhhHHHHHHHHHHhHHHhc---ccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHH
Confidence 8774447999999999999999999952211 378999999999999999875 789999999988875555668999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCE-EEEEecCCC-CceEEEEeC
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKV-SWKRMPERN-GENFLALTG 315 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v-~~~~~~~~~-~~n~v~~a~ 315 (345)
.+|+.+.+.||+||+++..--+-.-+ ....+...+..+.+|+..- .|-.+|.-+ +...+.+.+
T Consensus 217 ~~~~~v~~aLk~dgv~~~q~ec~wl~---------------~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 217 PYFGLVLDALKGDGVVCTQGECMWLH---------------LDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHHHHHHHhhCCCcEEEEecceehHH---------------HHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 99999999999999997654222211 1456666777788898322 244566422 334444555
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=110.38 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD~I 220 (345)
.+||++|||+|+++..+++.. ..+++++|+||..+++|++.+..... ..+++++++|.+++.+ ...++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL------DDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT------TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC------CceEEEEECchhhchhhccCceeEEE
Confidence 479999999999999999886 79999999999999999999865432 4679999999999873 357899999
Q ss_pred EEcCCCCCCCC----CCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGKVL----PQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~~p----~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+.|.+-..... ..-...+|++.+.+.|+|||++++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99875543211 112456899999999999999988654
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=114.62 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.+...+.+.++.+||+||||+|..+..+.+..|+.+|+++|+++.+++.|++...... -++++++.+|+.++
T Consensus 35 d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-------l~~i~~~~~d~~~~ 107 (187)
T PRK00107 35 DSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-------LKNVTVVHGRAEEF 107 (187)
T ss_pred HHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-------CCCEEEEeccHhhC
Confidence 44444455556789999999999999998887888999999999999999998875432 23499999999885
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
- . .++||+|+++.+. .-.++++.+.+.|+|||.+++-..
T Consensus 108 ~-~-~~~fDlV~~~~~~--------~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 108 G-Q-EEKFDVVTSRAVA--------SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred C-C-CCCccEEEEcccc--------CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 3 3 6789999986532 125789999999999999987644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-13 Score=120.35 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-ccccccccc-CC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSED-AS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~-~~ 214 (345)
...+++||+||.+.|..+.+++...| +.+++.+|+||+..+.|+++|...+. +++++++. +|+.+.+.. ..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~------~~~i~~~~~gdal~~l~~~~~ 130 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV------DDRIELLLGGDALDVLSRLLD 130 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC------cceEEEEecCcHHHHHHhccC
Confidence 35789999999999999999998877 78999999999999999999975543 67899999 699999875 67
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE-Eec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV-NCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv-n~~ 258 (345)
+.||+||+|+....+ .+||+.+.++|+|||++++ |+.
T Consensus 131 ~~fDliFIDadK~~y-------p~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 131 GSFDLVFIDADKADY-------PEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred CCccEEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEeecc
Confidence 999999999866543 5899999999999999887 554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=115.34 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||+||||+|.++..+++..|..+|+++|+++..++.+++++..... .+++++..|..+.+. +++||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-------~~v~~~~~d~~~~~~--~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-------ENVEVVQSDLFEALP--DGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-------TTEEEEESSTTTTCC--TTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-------ccccccccccccccc--ccceeE
Confidence 57899999999999999999999988999999999999999998865442 229999999988764 689999
Q ss_pred EEEcCCCCCCCC-CCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVL-PQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p-~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++.+...... ......++++.++++|+|||.+.+....
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 999764322211 1123578999999999999999775543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=104.96 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+|++||||.|..+..+.+..|+.+++++|+++.+++.++++..... .++++++.+|+...+....++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-------VSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-------CCceEEEeccccccChhhcCCCC
Confidence 34578999999999999999998888999999999999999998764322 24689999998865544557999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.|+++... . ...++++.+.+.|+|||.+++++.
T Consensus 91 ~v~~~~~~-----~--~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSG-----G--LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcc-----h--hHHHHHHHHHHHcCCCCEEEEEec
Confidence 99986421 1 124899999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-13 Score=123.09 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
..+|++||+||+++|..+.++++..| +.+|+.+|+||+..+.|+++|...+ .+.+++++.+|+.+++.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag------~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG------LDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT------GGGGEEEEES-HHHHHHHHHHT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC------CCCcEEEEEeccHhhHHHHHhc
Confidence 35789999999999999999998766 6899999999999999999996543 256999999999998764
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..++||+||+|+....+ .++|+.+.++|+|||++++.
T Consensus 117 ~~~~~fD~VFiDa~K~~y-------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 GEEGQFDFVFIDADKRNY-------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTTSEEEEEEESTGGGH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCceeEEEEcccccch-------hhHHHHHhhhccCCeEEEEc
Confidence 13589999999855422 57899999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=120.01 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=87.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
..++++||+||+|+|+.+.++.+..+ +.+|+++|+||+.++.|++++...+. +.+++++.+|+.+.+..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl------~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV------DHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEccHHHHHHHHHhC
Confidence 35689999999999998888887644 68999999999999999999865432 46899999999998754
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..++||+|++|+..+.+ .++++.+.+.|+|||++++
T Consensus 140 ~~~~~fD~VfiDa~k~~y-------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 140 DPKPEFDFAFVDADKPNY-------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCCCEEEECCCHHHH-------HHHHHHHHHhcCCCeEEEE
Confidence 14689999999754322 3689999999999999886
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=121.39 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--- 213 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--- 213 (345)
..++++||+||+|+|..+.++....| +.+|+.+|+||+..+.|+++|...+. .++++++.||+.++|...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl------~~~I~li~GdA~e~L~~l~~~ 189 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV------SHKVNVKHGLAAESLKSMIQN 189 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEcCHHHHHHHHHhc
Confidence 35789999999999999999987654 67899999999999999999965442 468999999999988642
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+||+|+....+ .++|+.+.++|+|||+++++
T Consensus 190 ~~~~~FD~VFIDa~K~~Y-------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 190 GEGSSYDFAFVDADKRMY-------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ccCCCCCEEEECCCHHHH-------HHHHHHHHHhcCCCcEEEEe
Confidence 4689999999865432 57899999999999999874
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=106.30 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+..|+.+|+++|++|.+++.|+++..... -++++++.+|+...+ .++||
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-------~~~i~~~~~d~~~~~---~~~~D 99 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-------CGNIDIIPGEAPIEL---PGKAD 99 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEecCchhhc---CcCCC
Confidence 46689999999999999999988888999999999999999998774222 246899999985432 46899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++.... ...++++.+.+.|+|||.++++.....
T Consensus 100 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 100 AIFIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred EEEECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEecHh
Confidence 999864221 235789999999999999998765443
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=109.15 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=82.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+....|+.+|++||+++.+++.+++...... -++++++.+|+.++. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-------~~~i~~i~~d~~~~~--~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-------LNNVEIVNGRAEDFQ--HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-------CCCeEEEecchhhcc--ccCCccE
Confidence 4789999999999999998877788999999999999999988764222 246999999998862 3579999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+++... .-.++++.+.+.|+|||.+++-..
T Consensus 113 I~s~~~~--------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 113 ITSRALA--------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred EEehhhh--------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9987521 124688899999999999987643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=111.38 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=86.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~y 217 (345)
+..+||+||||+|..+..+.+..|+.++++||+++.+++.|++.+.... -++++++++|+.+.+. ..+++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-------LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-------CCCEEEEecCHHHHHHHHcCcccc
Confidence 4678999999999999999888888999999999999999998875332 2579999999933333 246789
Q ss_pred cEEEEcCCCCCCCC-C---CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVL-P---QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p-~---~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++....+.... . ......+++.+.+.|+|||++++...
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99998543322111 1 12347899999999999999987543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=110.86 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=119.8
Q ss_pred cccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 123 KWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 123 ~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..+.++.+...-.... .+..+||+-..|-|..+.+.+++ ...+|..||.||.|+++|+-+-.-.++ .+.+++
T Consensus 115 ~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l-----~~~~i~ 188 (287)
T COG2521 115 KGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSREL-----FEIAIK 188 (287)
T ss_pred cCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccc-----cccccE
Confidence 4455566655433322 35789999999999999988874 446999999999999999876544332 356899
Q ss_pred EEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 201 VHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 201 v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
++.||+.+++++ .++.||+||.|.+.- +...+||+.|||+++.+.|+|||.+.-.+..+... -.| .
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---yrG---------~ 255 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---YRG---------L 255 (287)
T ss_pred EecccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---ccc---------C
Confidence 999999999987 567899999997542 33458999999999999999999998777776642 122 2
Q ss_pred HHHHHHHHHHHHH-CCCCEE
Q 038076 280 WMHNSAIRALSEA-FPGKVS 298 (345)
Q Consensus 280 ~~~~~~~~~l~~~-F~~~v~ 298 (345)
.+.+.++..|+++ |. .|.
T Consensus 256 d~~~gVa~RLr~vGF~-~v~ 274 (287)
T COG2521 256 DLPKGVAERLRRVGFE-VVK 274 (287)
T ss_pred ChhHHHHHHHHhcCce-eee
Confidence 5788999999998 55 444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=110.61 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=110.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC-Ccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-GRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-~~y 217 (345)
...++||+||+|.|.++..+.++.+..+|++|||++++.+.|++...++.+ ..|++++++|.-+|.+... .+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l------~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL------EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc------hhceeEehhhHHHhhhccccccc
Confidence 457899999999999999999987889999999999999999999988764 6899999999999987644 459
Q ss_pred cEEEEcCCC--CCCC--C----------CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 218 AGIVVDLFS--EGKV--L----------PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 218 D~Ii~D~f~--~~~~--p----------~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
|+|++..+- .+.. + ..+.-.++++.+++.|+|||.+.+-.. .. -+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~e------------------rl~ 176 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--PE------------------RLA 176 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--HH------------------HHH
Confidence 999997522 1111 1 113346788899999999999965433 32 256
Q ss_pred HHHHHHHH-HCCCCEEEEEecC-CCCceEEEEeC
Q 038076 284 SAIRALSE-AFPGKVSWKRMPE-RNGENFLALTG 315 (345)
Q Consensus 284 ~~~~~l~~-~F~~~v~~~~~~~-~~~~n~v~~a~ 315 (345)
.++..|++ -|...-..+..|. ....|.+++..
T Consensus 177 ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~ 210 (248)
T COG4123 177 EIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEA 210 (248)
T ss_pred HHHHHHHhcCCCceEEEEecCCCCCcceEEEEEE
Confidence 77888887 4552222222232 23456666653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=106.42 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCCEEEEeecccHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLML-DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~y 217 (345)
+..+||++|||+|.++..+. +..|+.++++||+++++++.|++.+.-.. -++++++++|..+ +... +++|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-------~~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-------LDNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-------STTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-------ccccceEEeehhc-cccccCCCe
Confidence 46789999999999999999 55788999999999999999999764222 2379999999999 5421 2799
Q ss_pred cEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++.... .++. ..++++.+.+.|+++|++++....
T Consensus 75 D~I~~~~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVL-----HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTG-----GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCch-----hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999987433 1222 247899999999999999887765
|
... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=115.53 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCCEEEEeeccc-HHHHH-HHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGG-TAAHL-MLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G-~~~~~-l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+|++|++||||.| ..+.. +.+++|+.+++++|+||++++.||+++.- .+. .++++++.+|+.+... ..++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------~~rV~F~~~Da~~~~~-~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------SKRMFFHTADVMDVTE-SLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------cCCcEEEECchhhccc-ccCC
Confidence 7899999999966 33333 33567999999999999999999999842 332 5789999999998532 2478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH-HHHHHHHHHHCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH-NSAIRALSEAFPG 295 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~-~~~~~~l~~~F~~ 295 (345)
||+|++++--... .-.-.+.++.+.+.|+|||++++-...... .++ ..+...--+-|.
T Consensus 196 FDlVF~~ALi~~d---k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r-----------------~~LYp~v~~~~~~gf~- 254 (296)
T PLN03075 196 YDVVFLAALVGMD---KEEKVKVIEHLGKHMAPGALLMLRSAHGAR-----------------AFLYPVVDPCDLRGFE- 254 (296)
T ss_pred cCEEEEecccccc---cccHHHHHHHHHHhcCCCcEEEEecccchH-----------------hhcCCCCChhhCCCeE-
Confidence 9999998532211 113468999999999999999976632111 111 111111122444
Q ss_pred CEEEEEecCCCCceEEEEeCCCC
Q 038076 296 KVSWKRMPERNGENFLALTGLLP 318 (345)
Q Consensus 296 ~v~~~~~~~~~~~n~v~~a~~~p 318 (345)
++..--|.++-.|.++++.+..
T Consensus 255 -~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 255 -VLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred -EEEEECCCCCceeeEEEEEeec
Confidence 4444457767788888887754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=109.64 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=89.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~y 217 (345)
+..++|+||||+|.++..+++.+|+.++++||+++.+++.|++...... -++++++.+|+.+++.. .+..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-------l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-------LKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-------CCCEEEEccCHHHHHHhhCCCCce
Confidence 4568999999999999999998999999999999999999988764222 24799999999886533 24589
Q ss_pred cEEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|+++..+++.- ...+...++++.+.+.|+|||.+.+...
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999976554321 1224557899999999999999987653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=116.75 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=85.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.++||+||||+|.++..+.+.+|+.+|++||+++.+++.|++.+..... ....+++++.+|+.+.+ .+++||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~----~~~~~v~~~~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP----EALDRCEFMINNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc----ccCceEEEEEccccccC--CCCCEEEE
Confidence 4689999999999999999999999999999999999999988743211 01247899999997754 34689999
Q ss_pred EEcCCCC-CCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 221 VVDLFSE-GKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 221 i~D~f~~-~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+++.+-. ......-...+++..++++|+|||.+.+-.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9974322 111111134678999999999999987664
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-11 Score=113.34 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+..|+.+|+++|+|+.+++.|+++...... ..+++++.+|..+.+. +++||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~------~~~i~~~~~D~~~~~~--~~~fD~ 192 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL------EDRVTLIQSDLFAALP--GRKYDL 192 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhhccC--CCCccE
Confidence 45789999999999999999988889999999999999999998753321 3579999999987652 458999
Q ss_pred EEEcCCCCCC-----CCCC--------c--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGK-----VLPQ--------L--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~--------l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++|.+-... .+.. + ....+++.+.+.|+|||.+++.+..
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9998532110 1100 0 1256788889999999999988773
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=95.07 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=74.7
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcC
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDL 224 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~ 224 (345)
|+||||+|..+..+.++ +..+++++|+++++++.+++... ..+++++.+|+.++ .-.+++||+|++-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~----------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK----------NEGVSFRQGDAEDL-PFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT----------TSTEEEEESBTTSS-SS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc----------ccCchheeehHHhC-cccccccccccccc
Confidence 79999999999999987 78999999999999999999875 24567999999886 55689999998732
Q ss_pred CCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 225 FSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 225 f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.-. .. -.-.++++++++.|||||.+++
T Consensus 69 ~~~-~~---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLH-HL---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HGG-GS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cee-ec---cCHHHHHHHHHHHcCcCeEEeC
Confidence 111 11 1346799999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=112.67 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.+++.+.+..|+.+|+++|++|.+++.|++. +++++.+|+.++. ...+||
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~~--~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------------GVDARTGDVRDWK--PKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------------CCcEEEcChhhCC--CCCCce
Confidence 456899999999999999999888889999999999999999762 3678899998763 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++. ..++++++++.|+|||.++++++.
T Consensus 92 ~v~~~~~l~-~~~d---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 92 VVVSNAALQ-WVPE---HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred EEEEehhhh-hCCC---HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 999854322 2222 267899999999999999998754
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=115.03 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=89.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||.+.|..+.++.+.. ++.+|+.+|+||+..+.|+++|...+. ..+++++.||+.+.|...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~------~~~I~~~~G~a~e~L~~l~~~~ 151 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV------AHKIDFREGPALPVLDQMIEDG 151 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCceEEEeccHHHHHHHHHhcc
Confidence 478999999999999999888764 468999999999999999999965442 479999999999988652
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+||+|+....+ .++|+.+.++|+|||++++.
T Consensus 152 ~~~~~fD~iFiDadK~~Y-------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 152 KYHGTFDFIFVDADKDNY-------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccCCcccEEEecCCHHHh-------HHHHHHHHHhcCCCeEEEEc
Confidence 3689999999865432 57899999999999999873
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=108.03 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=94.0
Q ss_pred HhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc
Q 038076 132 FVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 132 ~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
+...+...++.+||++|||+|-++..+.+..+..+|+++|+++.|++.|++...-... ..++++++||.+ |.
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-------~~i~fv~~dAe~-LP 114 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-------QNVEFVVGDAEN-LP 114 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-------cceEEEEechhh-CC
Confidence 3334433478999999999999999999988889999999999999999998863321 229999999988 45
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-++.+||++.+. |.-..++ .-...+++++|.|+|||.+++.=.+...
T Consensus 115 f~D~sFD~vt~~-fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTIS-FGLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEee-ehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 789999999984 2222232 2357899999999999998877665554
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=108.74 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+.+|.+||||.|..+..|.+++|+..|+++|-||+|++.|++.. |++++..+|.++| ..+...|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------p~~~f~~aDl~~w--~p~~~~d 94 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------PDATFEEADLRTW--KPEQPTD 94 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------CCCceecccHhhc--CCCCccc
Confidence 4678999999999999999999999999999999999999998865 4688999999999 3567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|+..+--. .+|.| .+.|..+...|+|||++++++...-.
T Consensus 95 llfaNAvlq-WlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 95 LLFANAVLQ-WLPDH---PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhh-hcccc---HHHHHHHHHhhCCCceEEEECCCccC
Confidence 999866443 24555 47889999999999999999886654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-11 Score=109.36 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+..|+.+|++||+++.+++.|++.+ ++++++.+|+.++. ...+||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------------~~~~~~~~d~~~~~--~~~~fD 95 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------------PDCQFVEADIASWQ--PPQALD 95 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------------CCCeEEECchhccC--CCCCcc
Confidence 4568999999999999999998888899999999999999999875 24788999998874 346899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++ ....+++++.+.|+|||.+++.+..
T Consensus 96 ~v~~~~~l~-~~~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 96 LIFANASLQ-WLP---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEEEccChh-hCC---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999864332 222 2357999999999999999987643
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=101.67 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=91.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+...+++||||+|+++.++....|..+|+++|-|++.++..+++..-- .-++++++.|||-+.|.+.+ ++
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f-------g~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF-------GVDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh-------CCCcEEEEeccchHhhcCCC-CC
Confidence 35667899999999999999998889999999999999999988765311 14689999999999998655 89
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.||+..- . .-.+.++.+..+|+|||.+++|....+.
T Consensus 104 daiFIGGg--~------~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 104 DAIFIGGG--G------NIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CEEEECCC--C------CHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999532 1 2357899999999999999999997664
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=103.65 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=85.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+.+..|+.+|++||+||++++.+++++.... -++++++.+|+.+.+......+|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-------VKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCCeEEEECchHHHHhhCCCCCC
Confidence 45678999999999999998877788999999999999999998874221 24699999999775444345678
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.|++|... .-.++++.+.+.|+|||.++++....
T Consensus 112 ~v~~~~~~--------~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 112 RVCIEGGR--------PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred EEEEECCc--------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 88886421 12678999999999999999987643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=105.13 Aligned_cols=107 Identities=15% Similarity=0.029 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|.++..+++.. +..+|+++|+++.+++.|++.+..... ..+++++.+|+.+++.....+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~------~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV------LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCCeEEEEechhhhHhhcCCCC
Confidence 456789999999999999887653 568999999999999999987642211 2578999999988776555789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|+++.... .-.++++.+.+.|+|||.+++...
T Consensus 113 D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 9999854211 225789999999999999987655
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=104.25 Aligned_cols=103 Identities=20% Similarity=0.127 Sum_probs=80.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|..+..+.+..+ ..+|+++|++|++++.|++++.... ...+++++.+|+.+.+. ...+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~------~~~~v~~~~~d~~~~~~-~~~~f 143 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG------YWGVVEVYHGDGKRGLE-KHAPF 143 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEECCcccCCc-cCCCc
Confidence 4567999999999999988887654 5799999999999999998875322 13469999999988654 35689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++.... . +-+.+.+.|+|||.+++.+.
T Consensus 144 D~Ii~~~~~~-~---------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 144 DAIIVTAAAS-T---------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cEEEEccCcc-h---------hhHHHHHhcCcCcEEEEEEc
Confidence 9999975332 1 22457788999999998764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=110.94 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..+||+||||+|.++..+.+..|+.+|+++|+|+.+++.|++.+.... -..+++.+|+.+.+ +++||+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~--------l~~~~~~~D~~~~~---~~~fDlI 265 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG--------LEGEVFASNVFSDI---KGRFDMI 265 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CCCEEEEccccccc---CCCccEE
Confidence 468999999999999999998898999999999999999999876432 23577888887653 5789999
Q ss_pred EEcCCCCCCCCC-CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGKVLP-QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~~p~-~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++..-+..... .-...++++.+.++|+|||.+.+-..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 997533221111 11347899999999999999865443
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=105.06 Aligned_cols=108 Identities=8% Similarity=0.051 Sum_probs=83.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+.+.. |..+|+++|++|.+++.|++.+.... -++++++.+|+.++. ..+++|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~-~~~~~f 115 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-------LHNVELVHGNAMELP-FDDNSF 115 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEEechhcCC-CCCCCc
Confidence 456799999999999999998764 56899999999999999998874221 357999999998752 346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++..-. ..+ ...++++++.+.|+|||.+++--.
T Consensus 116 D~V~~~~~l~-~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLR-NVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccc-cCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999863221 222 235789999999999999886433
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=97.85 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=72.9
Q ss_pred EEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 144 IAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
||++|||+|..++.+.+.+ |..++++||+|+++++.+++++... ..+++++++|+.++ ....++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~--------~~~~~~~~~D~~~l-~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED--------GPKVRFVQADARDL-PFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT--------TTTSEEEESCTTCH-HHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc--------CCceEEEECCHhHC-cccCCCeeEE
Confidence 7999999999999999876 4589999999999999999988522 35799999999885 4457799999
Q ss_pred EE-cC-CCCCCCCCCcchHHHHHHHHhccCCCc
Q 038076 221 VV-DL-FSEGKVLPQLEEVATWLKLKDRLMPNG 251 (345)
Q Consensus 221 i~-D~-f~~~~~p~~l~t~ef~~~~~~~L~pgG 251 (345)
++ .. +. +. ..-....+++.+.++|+|||
T Consensus 72 ~~~~~~~~--~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLH--HL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGG--GS-SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccC--CC-CHHHHHHHHHHHHHHhCCCC
Confidence 98 22 11 11 11134678999999999998
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-11 Score=110.03 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=81.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+++. .|+.++++||++|.|++.|++.+.... ...+++++.+|+.+.. ...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~------~~~~v~~~~~d~~~~~---~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK------APTPVDVIEGDIRDIA---IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEeCChhhCC---CCC
Confidence 45678999999999999888773 578999999999999999999875322 1357999999988752 346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+|++..... .+++ -....+++++++.|+|||.+++.
T Consensus 126 ~D~vv~~~~l~-~l~~-~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 126 ASMVVLNFTLQ-FLEP-SERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCEEehhhHHH-hCCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 99988642111 1111 12357899999999999998875
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-11 Score=110.18 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=85.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+..+.+. +.+|+++|+++++++.|+++..... ..++++++.+|+.+.....+++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g------~~~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG------VSDNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC------CccceEEEEcCHHHHhhhcCCCCC
Confidence 35679999999999999999875 5799999999999999999875322 146799999999886434567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++...-. .+. ...++++.+.+.|+|||.+++-.++.
T Consensus 115 ~V~~~~vl~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 115 LILFHAVLE-WVA---DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EEEehhHHH-hhC---CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999743211 111 12478999999999999998765554
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=106.04 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=85.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|.++..+.+.. |..+|++||++++|++.|++....... ...++++++.+|+.+. .-.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----~~~~~i~~~~~d~~~l-p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----SCYKNIEWIEGDATDL-PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh----ccCCCeEEEEcccccC-CCCCCCE
Confidence 456799999999999998888764 567999999999999999876532110 1135799999999874 3356789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++...-. ..+ ...++++++.+.|+|||.+++--+..+
T Consensus 147 D~V~~~~~l~-~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 147 DAITMGYGLR-NVV---DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred eEEEEecccc-cCC---CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 9998742111 222 236799999999999999887666544
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=104.89 Aligned_cols=104 Identities=20% Similarity=0.151 Sum_probs=81.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..+..+||+||||+|..+..+.+..+ ..+|++||++|++++.|++++.... -.+++++.+|+.+... ...+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-------~~~v~~~~~d~~~~~~-~~~~ 146 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-------LDNVIVIVGDGTQGWE-PLAP 146 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-------CCCeEEEECCcccCCc-ccCC
Confidence 35678999999999999999888754 4689999999999999999885332 2479999999987643 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|+++.... . ..+.+.+.|+|||.+++.+..
T Consensus 147 fD~Ii~~~~~~-~---------~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 147 YDRIYVTAAGP-K---------IPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCEEEEcCCcc-c---------ccHHHHHhcCcCcEEEEEEcC
Confidence 99999975321 1 124567889999999988764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-11 Score=109.38 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||+|.++..+.+.. |..+|+++|+++.|++.|++...-.. ..+++++++|+.+. .-.+++|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-------~~~i~~v~~da~~l-p~~d~sf 117 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-------LQNIEFVQGDAEDL-PFPDNSF 117 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------SEEEEE-BTTB---S-TT-E
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-------CCCeeEEEcCHHHh-cCCCCce
Confidence 457899999999999999988764 56899999999999999998874222 24899999999884 4567999
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++-. .-..++ .-...++++.|.|+|||.+++--.+.+
T Consensus 118 D~v~~~f-glrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 118 DAVTCSF-GLRNFP---DRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp EEEEEES--GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred eEEEHHh-hHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 9999732 211222 235789999999999999876544444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=110.82 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||++|||+|.++..+.+.+|+.+|+++|+||.+++.|+++...... ..+++++.+|..+.+. +++||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l------~~~i~~~~~D~~~~l~--~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL------EDRVTLIESDLFAALP--GRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCcEEEEECchhhhCC--CCCccEEE
Confidence 689999999999999999888999999999999999999998753321 3579999999987653 45899999
Q ss_pred EcCCCCCC-----C-------CC-Cc--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 222 VDLFSEGK-----V-------LP-QL--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 222 ~D~f~~~~-----~-------p~-~l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++.+-... . |. .+ ....+++.+.+.|+|||.+++.+..
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 97522110 0 10 01 1256788899999999999987663
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=96.55 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||++|||+|.++..+.+..+ +|+++|++|++++.+++++... +.+++++.+|..+.. .++||
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~~---~~~fD 84 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN--------NVGLDVVMTDLFKGV---RGKFD 84 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc--------CCceEEEEccccccc---CCccc
Confidence 3467899999999999999887644 8999999999999999987532 236889999987753 45899
Q ss_pred EEEEcCCCCCCCC----C-------------CcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVL----P-------------QLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p----~-------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++..-..... . .....++++.+.+.|+|||.+++......
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 9998753311100 0 00135789999999999999988765444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=112.61 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+ ++.+|++||+++++++.|+++..... ...+++++++|+.++. ..+++||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~------~~~~i~~~~~dae~l~-~~~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDP------VTSTIEYLCTTAEKLA-DEGRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC------cccceeEEecCHHHhh-hccCCCCE
Confidence 346899999999999988875 46899999999999999999875332 1357999999987753 34678999
Q ss_pred EEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++- +.. +++ ...++++.+++.|+|||.+++......
T Consensus 202 Vi~~~vLe--Hv~---d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 202 VLSLEVIE--HVA---NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEEhhHHH--hcC---CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9972 111 122 235799999999999999998876543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-11 Score=108.48 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|.++..+++. +.+|+++|+++..++.|+.+-.... -.+.+......+.. ...++||+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g--------v~i~y~~~~~edl~-~~~~~FDv 127 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG--------VNIDYRQATVEDLA-SAGGQFDV 127 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc--------ccccchhhhHHHHH-hcCCCccE
Confidence 4689999999999999999875 5999999999999999999875332 12445555655543 34589999
Q ss_pred EEEcCCCCCCCCCCcch-HHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEE-VATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t-~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|- .+..|..+ ..|++.|.+++||||++++...+...
T Consensus 128 V~cm-----EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 128 VTCM-----EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred EEEh-----hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 9972 33344333 35899999999999999988877654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=103.37 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=80.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||+||||+|..+..+.+.. ++.+|++||++|++++.|++.+.... -.+++++.+|+..... ....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-------~~~v~~~~gd~~~~~~-~~~~ 145 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-------YDNVEVIVGDGTLGYE-ENAP 145 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCeEEEECCcccCCC-cCCC
Confidence 3567899999999999998888764 34799999999999999999885332 2479999999987543 3578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|+++.... . ..+.+.+.|+|||.+++....
T Consensus 146 fD~I~~~~~~~-~---------~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 146 YDRIYVTAAGP-D---------IPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred cCEEEECCCcc-c---------chHHHHHhhCCCcEEEEEEcC
Confidence 99999975332 1 123566789999999987653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=110.96 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||.|.++..+.+.+ +.+|++||+++.+++.|++...... ..++++++.+|+.+. ...+++||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g------~~~~v~~~~~D~~~~-~~~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG------LSDKVSFQVADALNQ-PFEDGQFD 188 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEEcCcccC-CCCCCCcc
Confidence 356789999999999999998876 6899999999999999998764322 135799999999874 33568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-... .+++ ...++++++.+.|+|||.+++..+.
T Consensus 189 ~V~s~~~~-~h~~---d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 189 LVWSMESG-EHMP---DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EEEECCch-hccC---CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99973211 1222 2357999999999999999886554
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=103.80 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=82.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+.+. .|+.+++++|+++.|++.|++++.... ...+++++++|+.++- .+.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~------~~~~v~~~~~d~~~~~---~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH------SEIPVEILCNDIRHVE---IKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECChhhCC---CCC
Confidence 35678999999999999988876 378999999999999999999874221 1357999999998862 346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+|++...-+ ..++ -...++++++++.|+|||.+++.-.
T Consensus 123 ~d~v~~~~~l~-~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQ-FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchh-hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 89887633211 1111 1235799999999999999987643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=99.30 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=94.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~~ 216 (345)
.+..+||++|||+|.++..+.+..+..+|+++|+++.|++.+.+.... .+++..+.+|+.... ....++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~---------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE---------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh---------cCCcEEEECCCCCcchhhhcccc
Confidence 456799999999999999999877667999999999999877665431 246889999987521 112456
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPG 295 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~ 295 (345)
||+|++|...+. ....+++++++.|+|||.+++.+.....+ |.. +.....+..++.++++ |.
T Consensus 142 ~D~i~~d~~~p~------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-------~~~---~~~~~~~~~~~~l~~aGF~- 204 (226)
T PRK04266 142 VDVIYQDVAQPN------QAEIAIDNAEFFLKDGGYLLLAIKARSID-------VTK---DPKEIFKEEIRKLEEGGFE- 204 (226)
T ss_pred CCEEEECCCChh------HHHHHHHHHHHhcCCCcEEEEEEeccccc-------CcC---CHHHHHHHHHHHHHHcCCe-
Confidence 999999854311 12346889999999999999865532210 000 0113345666777776 66
Q ss_pred CEEEEEe
Q 038076 296 KVSWKRM 302 (345)
Q Consensus 296 ~v~~~~~ 302 (345)
.+.+...
T Consensus 205 ~i~~~~l 211 (226)
T PRK04266 205 ILEVVDL 211 (226)
T ss_pred EEEEEcC
Confidence 4554444
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=104.48 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=100.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+|++.|.|+|.++.+|+.. .|..+|+.+|++++..+.|++++..... +.++++..+|.++... ++.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l------~d~v~~~~~Dv~~~~~--~~~ 163 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL------GDRVTLKLGDVREGID--EED 163 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc------ccceEEEecccccccc--ccc
Confidence 356789999999999999999975 5669999999999999999999854332 4569999999999864 349
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
||+|++|..+++ ++++.+++.|+|||.+++-+...+ ..+..+..|++. |-
T Consensus 164 vDav~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~ve-------------------Qv~kt~~~l~~~g~~ 214 (256)
T COG2519 164 VDAVFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPTVE-------------------QVEKTVEALRERGFV 214 (256)
T ss_pred cCEEEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCCHH-------------------HHHHHHHHHHhcCcc
Confidence 999999987764 689999999999999998777555 367788888887 55
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=101.08 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=85.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+..|..+++++|+++.+++.|++++... ...+++++.+|..+.+. .++||
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~-------~~~~i~~~~~d~~~~~~--~~~fD 177 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-------LGARVEFLQGDWFEPLP--GGRFD 177 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC-------CCCcEEEEEccccCcCC--CCcee
Confidence 4567899999999999999999888899999999999999999987611 14579999999866542 47899
Q ss_pred EEEEcCCCCCC-----CCCC---------cc--------hHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGK-----VLPQ---------LE--------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~-----~p~~---------l~--------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.+-... .... ++ -..+++.+.+.|+|||.+++.+.
T Consensus 178 ~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 178 LIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 99997532110 0000 11 14577788899999999998664
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=102.38 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=84.1
Q ss_pred hccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 134 SLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 134 ~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
.+..+.+..+||+||+|+|..+..+.+.- .+|..||+++++.+.|++++..-+ -.+++++++|+..-.. .
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg-------~~nV~v~~gDG~~G~~-~ 135 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG-------YENVTVRHGDGSKGWP-E 135 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC-------CCceEEEECCcccCCC-C
Confidence 44445678999999999999998888763 399999999999999999885333 3459999999998764 4
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
...||.|++.+-.+ .+|..| .+.|+|||++++-+.
T Consensus 136 ~aPyD~I~Vtaaa~-~vP~~L---------l~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAP-EVPEAL---------LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccC-CCCHHH---------HHhcccCCEEEEEEc
Confidence 68999999976443 455433 467999999999888
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-11 Score=98.26 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=59.5
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEc
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVD 223 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D 223 (345)
|+||||+|.++..+++.+|..+++++|++|.+++.|++.+.... ..+......+..+.... ..++||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG-------NDNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CcceeEEEeecCChhhcccccccceehhh
Confidence 79999999999999999999999999999999988888775322 12233333333333222 23699999973
Q ss_pred CCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
..-. .. -...++++.+++.|+|||++
T Consensus 74 ~vl~-~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLH-HL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHh-hh---hhHHHHHHHHHHHcCCCCCC
Confidence 2111 11 13458999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=96.90 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=91.2
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc---
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--- 210 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--- 210 (345)
...+.+..+||+||||+|.++..+.+.. +..+|+++|++|.+ . .++++++.+|..+.-
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------CCCceEEEeeCCChhHHH
Confidence 3444567899999999999999888765 55799999999964 1 135788888886531
Q ss_pred ---c-cCCCcccEEEEcCCCCC-CC--CCCcc----hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 211 ---E-DASGRYAGIVVDLFSEG-KV--LPQLE----EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 211 ---~-~~~~~yD~Ii~D~f~~~-~~--p~~l~----t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
+ ...++||+|++|...+. .. ..++. ..++++.+.+.|+|||.+++.......
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~----------------- 151 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE----------------- 151 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc-----------------
Confidence 0 13568999999863210 11 11111 257899999999999999987654332
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEec
Q 038076 280 WMHNSAIRALSEAFPGKVSWKRMP 303 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~v~~~~~~ 303 (345)
...++..+++.|. .+.+++..
T Consensus 152 --~~~~l~~l~~~~~-~~~~~~~~ 172 (188)
T TIGR00438 152 --IDEYLNELRKLFE-KVKVTKPQ 172 (188)
T ss_pred --HHHHHHHHHhhhc-eEEEeCCC
Confidence 4567788888886 55555443
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=102.76 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..+||++|||-|.++..+++..|..+++.||+|...++.||+....+.. .+..++..|..+-+ .++||.|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-------~~~~v~~s~~~~~v---~~kfd~I 228 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-------ENTEVWASNLYEPV---EGKFDLI 228 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC-------CccEEEEecccccc---cccccEE
Confidence 4599999999999999999999999999999999999999998865432 22278888887754 3499999
Q ss_pred EEcCCCCCCC-CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE
Q 038076 221 VVDLFSEGKV-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 221 i~D~f~~~~~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
++..+-+... ..+-...+++...+++|++||-+-+-..... .....|++.|. .+.
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l----------------------~y~~~L~~~Fg-~v~ 284 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL----------------------PYEKKLKELFG-NVE 284 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC----------------------ChHHHHHHhcC-CEE
Confidence 9965443221 1222345899999999999998654433222 23446899999 455
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=102.65 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=82.2
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
++||+||||.|..+..+.+.+|+.+++++|+++++++.|++.+.... ..++++++.+|..+.. .+++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g------l~~~i~~~~~d~~~~~--~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG------LQGRIRIFYRDSAKDP--FPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC------CCcceEEEecccccCC--CCCCCCEee
Confidence 47999999999999999988888999999999999999999875332 2468999999986542 246899998
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+..... .++ ...++++++++.|+|||.+++...
T Consensus 73 ~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 73 GFEVIH-HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hHHHHH-hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 632111 121 236899999999999999987654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-10 Score=101.62 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+.+||++|||+|..+..+.+..|..+++++|+++.+++.|++...... -++++++.+|+.+.+ ..++||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~--~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-------LDNVTFLQSDWFEPL--PGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEECchhccC--cCCceeE
Confidence 4568999999999999999998888999999999999999998875332 236999999998754 3578999
Q ss_pred EEEcCCCCCC-----CCCCcc-----------------hHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGK-----VLPQLE-----------------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~l~-----------------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+++..-... ...... -..+++.+.+.|+|||.+++...
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 9997532210 111100 13678899999999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=104.45 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=110.1
Q ss_pred CeEEEEEcCcCceEEEEecCCCc-ccchHH---HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHH
Q 038076 101 KSRMLLLDSTYNVHSIINKGIHK-WTGSYW---DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEIL 176 (345)
Q Consensus 101 ~~r~L~ld~~~~~~~~~~~~p~~-l~~~Y~---~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~v 176 (345)
....|.+|.....++.+++++.. +...=. +.......+.+..+||+||||-|.++.++.+.+ +.+|++|.++++.
T Consensus 29 ~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q 107 (283)
T COG2230 29 DFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQ 107 (283)
T ss_pred HHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHH
Confidence 35668899888778888888752 322111 222222334678999999999999999999988 7999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 177 IDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 177 i~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+++.+...++ ..+++++..|-+++ .++||-|+. ..|..-+ .-.-..||+.+++.|+|||.++.
T Consensus 108 ~~~~~~r~~~~gl------~~~v~v~l~d~rd~----~e~fDrIvSvgmfEhvg---~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 108 LAYAEKRIAARGL------EDNVEVRLQDYRDF----EEPFDRIVSVGMFEHVG---KENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred HHHHHHHHHHcCC------CcccEEEecccccc----ccccceeeehhhHHHhC---cccHHHHHHHHHhhcCCCceEEE
Confidence 9999997754442 35899999999886 455999985 3333211 11236899999999999999988
Q ss_pred EecCCCC
Q 038076 256 NCGGIDG 262 (345)
Q Consensus 256 n~~~~~~ 262 (345)
.......
T Consensus 175 h~I~~~~ 181 (283)
T COG2230 175 HSITGPD 181 (283)
T ss_pred EEecCCC
Confidence 8776554
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=105.92 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=78.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||-|.++.++.+.+ +++|++|.++++-.+.|++...-.++ ..++++..+|.+++ +.+|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl------~~~v~v~~~D~~~~----~~~f 128 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL------EDRVEVRLQDYRDL----PGKF 128 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS------SSTEEEEES-GGG-------S-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEeecccc----CCCC
Confidence 4577899999999999999999887 79999999999999999988854432 46899999998875 3499
Q ss_pred cEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|+. ..+.. +. +-.-..||+.+.+.|+|||.+++..+....
T Consensus 129 D~IvSi~~~Eh--vg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 129 DRIVSIEMFEH--VG-RKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp SEEEEESEGGG--TC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CEEEEEechhh--cC-hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99985 22221 11 113468999999999999999988765543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=99.10 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=90.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--c----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--E---- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~---- 211 (345)
.+..+||+||||+|..+..+.+.. +..+|++||++|. .+ .++++++++|+.+.- +
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-------CCCcEEEecCCCChHHHHHHHH
Confidence 456789999999999999998875 4579999999991 11 245899999998741 1
Q ss_pred -cCCCcccEEEEcCCCCC-CCCC--Cc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 212 -DASGRYAGIVVDLFSEG-KVLP--QL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 212 -~~~~~yD~Ii~D~f~~~-~~p~--~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
...++||+|++|..... ..+. .. ...++++.+.+.|+|||.+++-++..+. +.
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~-------------------~~ 172 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG-------------------FD 172 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC-------------------HH
Confidence 13678999999863211 1110 00 1246889999999999999998776554 55
Q ss_pred HHHHHHHHHCCCCEEEEE
Q 038076 284 SAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 284 ~~~~~l~~~F~~~v~~~~ 301 (345)
.++..+++.|. .+.+++
T Consensus 173 ~~l~~l~~~f~-~v~~~K 189 (209)
T PRK11188 173 EYLREIRSLFT-KVKVRK 189 (209)
T ss_pred HHHHHHHhCce-EEEEEC
Confidence 67788999999 666543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=102.59 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=83.9
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||.|..+..+.+.+ +.+|+++|++|.+++.|++.+.. .++++++.+|+.+. ...+++|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~---------~~~i~~~~~D~~~~-~~~~~~F 118 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD---------KNKIEFEANDILKK-DFPENTF 118 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc---------CCceEEEECCcccC-CCCCCCe
Confidence 3566899999999999998887654 57999999999999999998742 35799999998753 2246789
Q ss_pred cEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 218 AGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+|++ +.+.. .+. -....+++++++.|+|||.+++.-+..
T Consensus 119 D~V~s~~~l~h--~~~-~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 119 DMIYSRDAILH--LSY-ADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEEhhhHHh--CCH-HHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99997 43322 111 123579999999999999999875543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=100.50 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+..|..+++++|+++++++.+++.+. ++++++.+|..+.. ..+++||+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----------~~~~~~~~d~~~~~-~~~~~fD~ 101 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----------ENVQFICGDAEKLP-LEDSSFDL 101 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----------CCCeEEecchhhCC-CCCCceeE
Confidence 4578999999999999999998888899999999999999998764 36788999988753 24678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++..... ... ...++++.+++.|+|||.+++......
T Consensus 102 vi~~~~l~-~~~---~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 102 IVSNLALQ-WCD---DLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EEEhhhhh-hcc---CHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99864322 111 235789999999999999998876544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-10 Score=99.26 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=79.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||.|..+..+.+. +.+|+++|+++.+++.+++...... -.+++++.+|..++- .+++||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-------~~~v~~~~~d~~~~~--~~~~fD 97 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-------LDNLHTAVVDLNNLT--FDGEYD 97 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-------CCcceEEecChhhCC--cCCCcC
Confidence 35689999999999999999874 5799999999999999998764322 235888899987652 246799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE-EEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM-VNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv-vn~~ 258 (345)
+|++-..-. ..+. -....+++.+++.|+|||.++ +...
T Consensus 98 ~I~~~~~~~-~~~~-~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 98 FILSTVVLM-FLEA-KTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred EEEEecchh-hCCH-HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 999742211 1111 134679999999999999854 4443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=101.97 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
+.+||++|||+|.++..+.+..++.+|++||+||.+++.|+++.... +++++.+|..+++.. ..++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~----------~~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA----------GGTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCEEEEeechhhcchhcCCCEeE
Confidence 45899999999999999998888889999999999999999987522 247899999887643 2357999
Q ss_pred EEEcCCCCCC-----CCCC---------c--------chHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGK-----VLPQ---------L--------EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~---------l--------~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|.+-... .++. + .-.++++.+.+.|+|||.+++-..
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9998643210 1110 1 124677788899999999987655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=103.83 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=88.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+.+. +..+|+++|+||.+++.|++++..... ..++.++.+|.... .+++||
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~------~~~~~~~~~~~~~~---~~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQV------SDRLQVKLIYLEQP---IEGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC------CcceEEEecccccc---cCCCce
Confidence 35689999999999999887764 557999999999999999998864432 34677777763332 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
+|+++.... .-.+++..+.+.|+|||.+++.-.... ....+.+.+++.|.
T Consensus 228 lVvan~~~~-------~l~~ll~~~~~~LkpgG~li~sgi~~~-------------------~~~~v~~~~~~~f~ 277 (288)
T TIGR00406 228 VIVANILAE-------VIKELYPQFSRLVKPGGWLILSGILET-------------------QAQSVCDAYEQGFT 277 (288)
T ss_pred EEEEecCHH-------HHHHHHHHHHHHcCCCcEEEEEeCcHh-------------------HHHHHHHHHHccCc
Confidence 999865321 124788999999999999987654322 24566666776665
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=103.16 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||++|||+|.++..+.+..|+.+|+++|+++.+++.|+++...... ..+++++.+|..+.+. ..+||+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~------~~~v~~~~~d~~~~~~--~~~fDlIv 187 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL------EHRVEFIQSNLFEPLA--GQKIDIIV 187 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhccCc--CCCccEEE
Confidence 689999999999999999988889999999999999999998753221 3469999999887642 34899999
Q ss_pred EcCCCCCC-----CCCC--------c--------chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 222 VDLFSEGK-----VLPQ--------L--------EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 222 ~D~f~~~~-----~p~~--------l--------~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
++.+-... .+.. + .-..+++.+.+.|+|||.+++.+...
T Consensus 188 sNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 188 SNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred ECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 97422110 0000 0 23467788889999999999888743
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=91.36 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+++. +.+++++|++|++++.+++.+..... .+.+++++++|..+.+. +++||
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~d 92 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI-----RNNGVEVIRSDLFEPFR--GDKFD 92 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC-----CCcceEEEecccccccc--ccCce
Confidence 45678999999999999999876 68999999999999999888754321 12238899999877543 34899
Q ss_pred EEEEcCCCCCCCCC-----------------CcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLP-----------------QLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~-----------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|+++.......+. ......+++++.+.|+|||.+++.....
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 99986422110000 0113568999999999999988776543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=98.47 Aligned_cols=103 Identities=12% Similarity=0.025 Sum_probs=79.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. +.+++++|++|.+++.|++... ...++.+|+.+. ...+++||+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~------------~~~~~~~d~~~~-~~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA------------ADHYLAGDIESL-PLATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------------CCCEEEcCcccC-cCCCCcEEE
Confidence 4678999999999999888763 5799999999999999998753 135788898774 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++...-.. .+ ...+++.++.+.|+|||.+++......
T Consensus 107 V~s~~~l~~-~~---d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 107 AWSNLAVQW-CG---NLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEECchhhh-cC---CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 998543221 11 235789999999999999999876654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=97.63 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=81.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+.+. +..+++++|+|+.+++.++++.... +.+++++.+|..+.+ .+++||
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~--------~~~~~~~~~d~~~~~--~~~~fD 103 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA--------GVDVDVRRGDWARAV--EFRPFD 103 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh--------CCeeEEEECchhhhc--cCCCee
Confidence 34579999999999999988864 4459999999999999999887532 235889999998765 357899
Q ss_pred EEEEcCCCCCCCCC----------------C-cchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLP----------------Q-LEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~----------------~-l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|+++......... . ..-..+++.+.+.|+|||.+++-...
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99998522111000 0 01245788899999999998865443
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=101.33 Aligned_cols=129 Identities=23% Similarity=0.303 Sum_probs=96.0
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDA 213 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~ 213 (345)
.+.+..+|++-|.|+|+++.++.+. .|..+|...|++++..+.|++.|....+ ..+++++++|..+ |-...
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl------~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL------DDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC------CTTEEEEES-GGCG--STT-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC------CCCceeEecceecccccccc
Confidence 3467889999999999999999975 6789999999999999999999864432 4689999999864 32223
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
+..+|.||+|+.+++ +.+..+.+.| ++||.+++-+.+.+ .....+.+|++.
T Consensus 111 ~~~~DavfLDlp~Pw---------~~i~~~~~~L~~~gG~i~~fsP~ie-------------------Qv~~~~~~L~~~ 162 (247)
T PF08704_consen 111 ESDFDAVFLDLPDPW---------EAIPHAKRALKKPGGRICCFSPCIE-------------------QVQKTVEALREH 162 (247)
T ss_dssp TTSEEEEEEESSSGG---------GGHHHHHHHE-EEEEEEEEEESSHH-------------------HHHHHHHHHHHT
T ss_pred cCcccEEEEeCCCHH---------HHHHHHHHHHhcCCceEEEECCCHH-------------------HHHHHHHHHHHC
Confidence 578999999998864 3577888999 89999987766544 466778888874
Q ss_pred -CCCCEEEE
Q 038076 293 -FPGKVSWK 300 (345)
Q Consensus 293 -F~~~v~~~ 300 (345)
|. .+..+
T Consensus 163 gf~-~i~~~ 170 (247)
T PF08704_consen 163 GFT-DIETV 170 (247)
T ss_dssp TEE-EEEEE
T ss_pred CCe-eeEEE
Confidence 65 44433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=105.85 Aligned_cols=112 Identities=17% Similarity=0.054 Sum_probs=89.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
...+|+||||.|..+..+++..|+..+++||+++.+++.|.+.....+ -++++++.+|++.++.. .++.+|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-------L~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-------LKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEECCHHHhhhhCCCCceeE
Confidence 458999999999999999999999999999999999999988775332 24699999999876533 4688999
Q ss_pred EEEcCCCCCCCC--CCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVL--PQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++-..+++.-. ..+...+|++.+.+.|+|||.+.+..-.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 998654443211 2356689999999999999999776543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-09 Score=104.85 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+..|+.+++++|+||++++.|+++.... +.+++++.+|..+......++||+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~--------g~rV~fi~gDl~e~~l~~~~~FDL 322 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL--------GARVEFAHGSWFDTDMPSEGKWDI 322 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCcEEEEEcchhccccccCCCccE
Confidence 456899999999999999988888999999999999999999987522 237999999987642222457999
Q ss_pred EEEcCCCCCC----CCC---------Cc--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGK----VLP---------QL--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~----~p~---------~l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++.+-... ... .+ .-+++++.+.++|+|||.+++-...
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 9998633110 000 01 1235666777899999998866543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=102.37 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=81.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+.+|+.+++++|+ |.+++.++++..... ..+|++++.+|+.+. .-..+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g------l~~rv~~~~~d~~~~---~~~~~D 217 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG------VADRMRGIAVDIYKE---SYPEAD 217 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC------ccceEEEEecCccCC---CCCCCC
Confidence 3567999999999999999999999999999998 899999998775332 246899999998763 123479
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++.-.-... ..-...+.++++++.|+|||.+++.
T Consensus 218 ~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 218 AVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 98864322111 1112356899999999999998765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-09 Score=95.67 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||++|||+|..+..+.+..| ..+++++|+++.+++.+++.+.... .+++++++.+|+.+.. ...++||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~-~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG------LSGNVEFVQGDAEALP-FPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc------cccCeEEEecccccCC-CCCCCcc
Confidence 457999999999999999988776 6899999999999999999885321 1467899999998753 3457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++..... ..+ ...++++.+.+.|+|||.+++.-..
T Consensus 124 ~I~~~~~l~-~~~---~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 124 AVTIAFGLR-NVP---DIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred EEEEecccc-cCC---CHHHHHHHHHHhccCCcEEEEEEec
Confidence 998743221 111 2467899999999999998765443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-09 Score=95.42 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=83.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.++.+||++|||+|..+..+.+.+ |..+++++|+++.+++.|++.... ..++++++.+|+...- ..+++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--------~~~~~~~~~~d~~~~~-~~~~~ 87 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--------LGPNVEFVRGDADGLP-FPDGS 87 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--------CCCceEEEecccccCC-CCCCC
Confidence 3567899999999999999998876 678999999999999999987321 1467899999987642 24578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|++...-. ..+ ....+++.+.+.|+|||.+++..
T Consensus 88 ~D~v~~~~~~~-~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQ-HLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhh-ccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999853221 111 23578999999999999988754
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-09 Score=103.96 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||.|..+..+.+.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.....++|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-------~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-------LTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEeCCcccccchhcccC
Confidence 355789999999999999988765 56899999999999999998875322 1349999999988754334789
Q ss_pred cEEEEcCCCCCC-C----CCC--------c-----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQ--------L-----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~--------l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|+...+. . |.. + ...++++.+.+.|+|||.++....+...
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 999999864321 1 110 0 1356899999999999999876654443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=94.75 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=83.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||.|..+..+.+..|. .+++++|+++.+++.+++.+. . ..+++++.+|+.+.. ...++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-------~~~i~~~~~d~~~~~-~~~~~~ 107 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-------PLNIEFIQADAEALP-FEDNSF 107 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-------CCCceEEecchhcCC-CCCCcE
Confidence 35789999999999999999888775 799999999999999999875 1 357899999998864 345689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++..... ..+ ...++++.+++.|+|||.+++.-.
T Consensus 108 D~i~~~~~~~-~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 108 DAVTIAFGLR-NVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEeeeeC-Ccc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998743221 111 235789999999999999886443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=81.64 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=80.7
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+++++|||.|.....+.+ .+..+++++|+++..++.+++..... ...+++++.+|..++......+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL-------LADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc-------cccceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999998887 56789999999999999998532211 2467999999999986434678999999
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+...... .-....+++.+.+.|+|+|.+++.
T Consensus 73 ~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7543210 224567899999999999998864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=96.27 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+.++.+. +.+|+++|++|.+++.+++...... -+++....|...+ ..+++||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~--------~~v~~~~~d~~~~--~~~~~fD 96 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN--------LPLRTDAYDINAA--ALNEDYD 96 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC--------CCceeEeccchhc--cccCCCC
Confidence 35789999999999999999874 5799999999999999988764221 1366777776543 1246899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..-. ..+. -...++++.+++.|+|||.+++..
T Consensus 97 ~I~~~~~~~-~~~~-~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 97 FIFSTVVFM-FLQA-GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EEEEecccc-cCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 998743211 1111 133578999999999999855443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-09 Score=98.30 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+. +..+|+++|+||.+++.|++++..... ..++.+..+| .+||
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~------~~~~~~~~~~---------~~fD 181 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGV------ELNVYLPQGD---------LKAD 181 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEccCC---------CCcC
Confidence 46789999999999999887764 445799999999999999998864321 1234433332 2799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.... .-..++..+.+.|+|||.+++.-.
T Consensus 182 ~Vvani~~~-------~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 182 VIVANILAN-------PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EEEEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999864321 124678899999999999997644
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=103.64 Aligned_cols=102 Identities=11% Similarity=-0.091 Sum_probs=80.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|..+..+.+..++.+++++|+++++++.|++.+. .++++++.+|+.+. ...++.||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~----------~~~i~~i~gD~e~l-p~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIIEGDAEDL-PFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------ccCCeEEeccHHhC-CCCCCceeE
Confidence 4578999999999999888887777899999999999999999764 23578899999874 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|++...-. ..+ .....++++.+.|+|||.+++.
T Consensus 182 VIs~~~L~-~~~---d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIE-YWP---DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhh-hCC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 98742111 122 2246899999999999998764
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-09 Score=95.23 Aligned_cols=108 Identities=14% Similarity=-0.001 Sum_probs=81.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|+++..++... ..+|++||+|+..++.+++++.... -.+++++.+|+.+++....++||+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~-------~~~v~~~~~D~~~~l~~~~~~fDl 124 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK-------AGNARVVNTNALSFLAQPGTPHNV 124 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEEEchHHHHHhhcCCCceE
Confidence 45789999999999998766543 4799999999999999999875432 236999999999987544457999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhc--cCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDR--LMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~--L~pgGvlvvn~~~~ 260 (345)
|++|.+-.. -...+.++.+.+. |+|+|++++.+...
T Consensus 125 V~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 125 VFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 999864211 1234556655554 89999999887654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=105.16 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+||++|||+|.++..+++..|+.+|+++|+||.+++.|+++..... ...+++++.+|..+.+. .++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~------l~~~v~~~~~D~~~~~~--~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE------VTDRIQIIHSNWFENIE--KQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC------CccceeeeecchhhhCc--CCCccEE
Confidence 468999999999999999888889999999999999999999874322 13589999999877552 4689999
Q ss_pred EEcCCCCCC-----C--------CC-Ccc--------hHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGK-----V--------LP-QLE--------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~-----~--------p~-~l~--------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++.+--.. . |. .++ -..+++.+.+.|+|||.+++-+.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 997532110 0 00 011 13356677889999999988654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=8e-09 Score=104.85 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||.|..+..+.+.+ +.+|+++|+++.+++.|++.... ...+++++.+|..+.. -.+++||
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~--------~~~~v~~~~~d~~~~~-~~~~~fD 334 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG--------RKCSVEFEVADCTKKT-YPDNSFD 334 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc--------CCCceEEEEcCcccCC-CCCCCEE
Confidence 356789999999999999888765 67999999999999999987531 1357999999987642 2357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...- .+++ ....+++++++.|+|||.+++..+...
T Consensus 335 ~I~s~~~l-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 335 VIYSRDTI-LHIQ---DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEECCcc-cccC---CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 99983211 1121 235789999999999999998765443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=102.68 Aligned_cols=112 Identities=18% Similarity=0.043 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||++|||+|.++..++. .+..+|++||+|+.+++.|++++..... ...+++++.+|+.++++. ..+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl-----~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKL-----DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCcEEEEEccHHHHHHHHHhcCC
Confidence 3578999999999999876654 3456999999999999999999976542 124799999999999854 356
Q ss_pred cccEEEEcCCCCCCCCCCcc-----hHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLE-----EVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~-----t~ef~~~~~~~L~pgGvlvvn 256 (345)
+||+||+|.+.-..-...+. -.+++..+.++|+|||+++.-
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 89999999654211001111 124455678999999988753
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9e-09 Score=103.44 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=89.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+.++.+.. +..+|+++|+++.+++.+++++.-.+ -.+++++.+|+..+.....++|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-------~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-------LSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEECchhhhhhhhhccC
Confidence 456789999999999998888765 45899999999999999998874222 2358999999988643345789
Q ss_pred cEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. . |... ...+.+..+.+.|+|||.++....+...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 999999877432 1 1110 2366788999999999999887776654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=98.76 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=80.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|..+..+.+. .+..+|+++|+++.+++.|+++..... -++++++.+|..+. ...++.|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-------~~~v~~~~~d~~~l-~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-------YTNVEFRLGEIEAL-PVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-------CCCEEEEEcchhhC-CCCCCce
Confidence 45689999999999888776665 355789999999999999999764221 24789999998763 3345689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|+.+..-. ..+ ...+.++++.+.|+|||.+++.
T Consensus 148 D~Vi~~~v~~-~~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 148 DVIISNCVIN-LSP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eEEEEcCccc-CCC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 9999764221 111 2357899999999999999874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-09 Score=94.30 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=77.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|..+..+.+.. .+++++|+++++++.|++++.... -.+++++.+|+.+.+. ..++||
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~-~~~~fD 146 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-------LHNVSVRHGDGWKGWP-AYAPFD 146 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-------CCceEEEECCcccCCC-cCCCcC
Confidence 456899999999999998777653 489999999999999999885322 2358999999876543 347899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.... ...+.+.+.|+|||.+++...
T Consensus 147 ~I~~~~~~~----------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP----------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch----------hhhHHHHHhcCCCcEEEEEEc
Confidence 999975221 123456789999999999876
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-09 Score=96.64 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=97.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|+|.|..+..+.+..+ ...|+++|+++.+++.+++.+.... -.+++++.+|++.+.. ..++|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-------~~~v~~~~~D~~~~~~-~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-------VLNVAVTNFDGRVFGA-AVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-------CCcEEEecCCHHHhhh-hccCC
Confidence 3557899999999999998887654 4699999999999999999885332 2468999999987633 34569
Q ss_pred cEEEEcCCCCCC-C----CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 218 AGIVVDLFSEGK-V----LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
|.|++|+...+. . |.. -...+.++.+.+.|+|||.++....+...
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~----------------- 204 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP----------------- 204 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-----------------
Confidence 999999865432 1 111 02356888999999999999877655443
Q ss_pred HHHHHHHHHHHHHCCCC
Q 038076 280 WMHNSAIRALSEAFPGK 296 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~ 296 (345)
..-..+++.+.+.+++.
T Consensus 205 ~Ene~vv~~~l~~~~~~ 221 (264)
T TIGR00446 205 EENEAVVDYLLEKRPDV 221 (264)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 22356667777777743
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=113.49 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||++|||+|.++.++++. +..+|++||+++.+++.|++++..... ...+++++.+|+.++++..+++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~-----~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGL-----SGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CccceEEEEccHHHHHHHcCCCcCE
Confidence 5789999999999999998874 446799999999999999999975542 1258999999999998655678999
Q ss_pred EEEcCCCCCCC--CCCc-----chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKV--LPQL-----EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~--p~~l-----~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|.+.-... .... .-.+.+..+.++|+|||++++....
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99996432110 0000 1135677888899999998875543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=101.68 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||++|||+|..+..+.+..++.+|+++|+++.+++.+++++... +.+++++.+|+.+.... .+++|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--------g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--------GLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCeEEEEcCcccchhhcccCCC
Confidence 4567899999999999999998776689999999999999999987532 22478999999875321 35689
Q ss_pred cEEEEcCCCCC-CC----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-KV----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|.+..+ +. |... ...++++.+.+.|+|||.+++...+...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99999985432 11 1110 1236889999999999999987765544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=102.79 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+.+..+ ..+|+++|+++.+++.+++++.-.. -.+++++.+|+.++. .+++|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-------~~~v~~~~~Da~~~~--~~~~f 319 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-------ITIIETIEGDARSFS--PEEQP 319 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-------CCeEEEEeCcccccc--cCCCC
Confidence 3557899999999999888877543 4799999999999999998874322 136899999999875 34689
Q ss_pred cEEEEcCCCCCC-C----CCC---c----------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQ---L----------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~---l----------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. . |.. + ...+++..+.+.|+|||++++...+...
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999999865432 1 111 1 1246899999999999999998877665
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.8e-09 Score=99.93 Aligned_cols=122 Identities=14% Similarity=-0.019 Sum_probs=88.1
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.|..+....+..+||++|||+|+++..+.. .+.+++++|+|+.+++.|++++.... .++++++.+|+.+.
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g-------~~~i~~~~~D~~~l 242 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYG-------IEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhC-------CCCCeEEecchhcC
Confidence 3343333334567899999999999887665 36899999999999999998774322 12388999999884
Q ss_pred cccCCCcccEEEEcCCCCCCC--CCC---cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKV--LPQ---LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~--p~~---l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
....++||+|++|.+-+... ..+ -.-.++++.+++.|+|||.+++-+....
T Consensus 243 -~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 243 -PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred -CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 33467899999996543211 111 1236789999999999999988776543
|
This family is found exclusively in the Archaea. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=102.22 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+.+.+ +.+|+++|+++++++.|++... +..+++..+|.++. +++||
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~----------~l~v~~~~~D~~~l----~~~fD 230 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA----------GLPVEIRLQDYRDL----NGQFD 230 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc----------cCeEEEEECchhhc----CCCCC
Confidence 456799999999999999988764 5799999999999999998763 22488888998764 46899
Q ss_pred EEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.|++- .+. .++. -.-.++++.+.+.|+|||.+++......
T Consensus 231 ~Ivs~~~~e--hvg~-~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 231 RIVSVGMFE--HVGP-KNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EEEEeCchh--hCCh-HHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99862 111 1111 1225789999999999999998766544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-09 Score=96.94 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=82.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...+||++|||+|.++..+.++.+..+|++||+||.+++.|++.+ ++++++.+|++++.. .++||+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------------~~v~~v~~D~~e~~~--~~kFDl 129 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------------PEAEWITSDVFEFES--NEKFDV 129 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------cCCEEEECchhhhcc--cCCCcE
Confidence 357999999999999988887766789999999999999999864 257899999999853 468999
Q ss_pred EEEcCCCCCCCCC---C--cc-----------hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLP---Q--LE-----------EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~---~--l~-----------t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+++..-....+. . -+ -.+++......|+|+|.+.+-+.+..
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 9997533211000 0 11 25788888999999997766654433
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=99.17 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS---LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~---~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+..+||++|||+|..+..+.+..+. .+++++|+++.+++.|++.+ +++++.++|+.+. .-.+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------~~~~~~~~d~~~l-p~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------PQVTFCVASSHRL-PFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------CCCeEEEeecccC-CCcCCc
Confidence 4467999999999999998877653 47999999999999998754 3478899998874 335678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||+|+.- +. ..+++++++.|+|||.+++-..+.
T Consensus 152 fD~I~~~-~~----------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 152 LDAIIRI-YA----------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eeEEEEe-cC----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9999862 22 123577889999999998765543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=94.12 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=81.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+||+||+|+|.++..+++..|..+|+++||+|..+++|+++..... -.++.++.+|..+- ..++||+|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-------l~~~~~~~~dlf~~---~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-------LVRVLVVQSDLFEP---LRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-------CccEEEEeeecccc---cCCceeEEEe
Confidence 8999999999999999999999999999999999999999875332 14566666665544 4459999998
Q ss_pred cCCCCCCCCCC----------------c--------chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 223 DLFSEGKVLPQ----------------L--------EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 223 D~f~~~~~p~~----------------l--------~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+. +++|.. + ....++..+.+.|+|||++++-.....
T Consensus 183 NP---PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 183 NP---PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred CC---CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 54 222211 0 245677889999999999998776433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=101.10 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=87.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~y 217 (345)
.+..+||++|||.|..+..+.+..+..+|+++|+++.+++.+++...-... ..+++++.+|+..... ...++|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEecccccccccccccccc
Confidence 356789999999999999999877778999999999999999988753221 1234457777765321 135689
Q ss_pred cEEEEcCCCCC-CC----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-KV----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|+...+ +. |.-. ...+++..+.+.|+|||.+++...+...
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999986543 21 2111 1367899999999999999988776664
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-09 Score=98.52 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=79.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|..+..+.+. +.+|+++|+++.+++.+++..... +-++++...|....- .+++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~--------~l~v~~~~~D~~~~~--~~~~fD 186 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE--------NLNIRTGLYDINSAS--IQEEYD 186 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc--------CCceEEEEechhccc--ccCCcc
Confidence 35679999999999999998874 579999999999999999876432 236888888886642 367899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..-. .++. -....+++.+.+.|+|||.+++..
T Consensus 187 ~I~~~~vl~-~l~~-~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLM-FLNR-ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEEEcchhh-hCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999753221 1111 133578999999999999966543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=108.15 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD 218 (345)
++.+||+||||+|..+..+.+.+|+.+++++|+++.|++.|++..... +.+++++.+|+.+.-. -.+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~--------g~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE--------GRSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc--------CCCeEEEEcchHhCccccCCCCEE
Confidence 578999999999999998888889999999999999999999875321 3568889999987421 2467899
Q ss_pred EEEEcCCCCC---CCCC------CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEG---KVLP------QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~---~~p~------~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++...-+. .+|. .-....+++++.+.|+|||.+++.-.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9987431110 1110 11346789999999999999988643
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=97.07 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=77.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||+||+|+|..+..+.+.. +..+|++||++|.+.+.|++.+.... ..+++++++|+..-.. ....
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-------~~nv~~~~gdg~~g~~-~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-------IDNVEVVVGDGSEGWP-EEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-------THSEEEEES-GGGTTG-GG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-------cCceeEEEcchhhccc-cCCC
Confidence 5677899999999999998888764 34689999999999999999985322 3489999999988654 3568
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||.|++..... .+| ..+.+.|++||++++-+..
T Consensus 142 fD~I~v~~a~~-~ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 142 FDRIIVTAAVP-EIP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEEEESSBBS-S-----------HHHHHTEEEEEEEEEEESS
T ss_pred cCEEEEeeccc-hHH---------HHHHHhcCCCcEEEEEEcc
Confidence 99999975332 222 2345679999999998875
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=93.26 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC-----CCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK-----PTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~-----~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+||++|||.|..+.+|+++ +.+|++||++|..++.+.+..+...... ..+...+++++++|..++-....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4579999999999999999874 7899999999999998655433321000 01124679999999998743234
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||.|+--.+-. .+|+. ....+++.+.+.|+|||.+++-+.
T Consensus 112 ~~fD~i~D~~~~~-~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALI-ALPEE-MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhc-cCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 6799997432221 33332 345689999999999997555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-09 Score=91.83 Aligned_cols=148 Identities=15% Similarity=0.054 Sum_probs=96.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-.+++++|||.|.++..|..+. .+++++|+++..++.|++...- -+++++++.|..++. ++++||+|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~---------~~~V~~~~~dvp~~~--P~~~FDLI 110 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG---------LPHVEWIQADVPEFW--PEGRFDLI 110 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT----------SSEEEEES-TTT-----SS-EEEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC---------CCCeEEEECcCCCCC--CCCCeeEE
Confidence 3689999999999999998764 5899999999999999998862 368999999998874 67899999
Q ss_pred EEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEE
Q 038076 221 VVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW 299 (345)
Q Consensus 221 i~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~ 299 (345)
++--. .++.... .-..+.+.+.+.|+|||.+++--+.... . ..|... .--+.+...+++.|- .|..
T Consensus 111 V~SEV--lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~--c---~~wgh~-----~ga~tv~~~~~~~~~-~~~~ 177 (201)
T PF05401_consen 111 VLSEV--LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN--C---RRWGHA-----AGAETVLEMLQEHLT-EVER 177 (201)
T ss_dssp EEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH--H---HHTT-S-------HHHHHHHHHHHSE-EEEE
T ss_pred EEehH--hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc--c---cccCcc-----cchHHHHHHHHHHhh-heeE
Confidence 98311 1221111 1234778899999999999985553211 0 112111 124677888898888 6654
Q ss_pred EEec-CCCCceEEEEe
Q 038076 300 KRMP-ERNGENFLALT 314 (345)
Q Consensus 300 ~~~~-~~~~~n~v~~a 314 (345)
.... +..+.+.++..
T Consensus 178 ~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 178 VECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEE-SSTTSEEEEEE
T ss_pred EEEcCCCCCCceEeee
Confidence 4443 34566766543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=97.27 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||++|||+|.++...++. ...++.++||||..++.|+++..++.. .+..+.-..+..... ..++||
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v------~~~~~~~~~~~~~~~--~~~~~D 231 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV------ELLVQAKGFLLLEVP--ENGPFD 231 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC------chhhhcccccchhhc--ccCccc
Confidence 47899999999999999988864 668899999999999999999876542 112222222333322 247999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHH-HHHCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRAL-SEAFP 294 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l-~~~F~ 294 (345)
+|+..+-.. .-.++...++++|+|||.+++.=.-.+ ..+.+..++ ++-|.
T Consensus 232 vIVANILA~-------vl~~La~~~~~~lkpgg~lIlSGIl~~-------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 232 VIVANILAE-------VLVELAPDIKRLLKPGGRLILSGILED-------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred EEEehhhHH-------HHHHHHHHHHHHcCCCceEEEEeehHh-------------------HHHHHHHHHHhCCCe
Confidence 999866332 124788899999999999987654333 255677777 44566
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=91.11 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=76.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.+||+||||+|..+..+.+..|+.++++||++|++++.|++++. +++++.+|+.+. ..+++|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------~~~~~~~d~~~~--~~~~sf 106 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------NINIIQGSLFDP--FKDNFF 106 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------CCcEEEeeccCC--CCCCCE
Confidence 356789999999999999999887788999999999999999998642 366888998873 356799
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++...-. ++++ -.-.++++++.+.++ +-+++.....
T Consensus 107 D~V~~~~vL~-hl~p-~~~~~~l~el~r~~~-~~v~i~e~~~ 145 (204)
T TIGR03587 107 DLVLTKGVLI-HINP-DNLPTAYRELYRCSN-RYILIAEYYN 145 (204)
T ss_pred EEEEECChhh-hCCH-HHHHHHHHHHHhhcC-cEEEEEEeeC
Confidence 9999743221 1221 123567888888763 2344445443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=92.23 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC------CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS------LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~------~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
+..++|+++||+|-++--++++-+. .+|+++||+|+|++.+++.-...++ ..++++.++.+||.+ |.-+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l----~~~~~~~w~~~dAE~-LpFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL----KASSRVEWVEGDAED-LPFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC----CcCCceEEEeCCccc-CCCC
Confidence 4579999999999999888887555 8999999999999999987721111 236789999999998 4567
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+..||...+ +|.-.+.+ .-...+++++|.|||||++.+
T Consensus 175 d~s~D~yTi-afGIRN~t---h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTI-AFGIRNVT---HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CCcceeEEE-ecceecCC---CHHHHHHHHHHhcCCCcEEEE
Confidence 889999887 33332222 225689999999999999874
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=97.01 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=77.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|.++..+.+..+. .+|++||++|++++.|++...... -.+++++.+|+.+.... .+.|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-------~~nV~~i~gD~~~~~~~-~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-------IENVIFVCGDGYYGVPE-FAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEeCChhhcccc-cCCc
Confidence 45679999999999999999887653 579999999999999998764322 24689999999876543 3579
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++.... +....+.+.|+|||.+++...
T Consensus 151 D~Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 151 DVIFVTVGVD----------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred cEEEECCchH----------HhHHHHHHhcCCCCEEEEEeC
Confidence 9999874221 122345678999999887653
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=97.30 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.++||++|||||.+...|.+. +.+|+++|+.+++++.|+++-...+..+ ..-.-|+++.+.|+... .++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~-~~~~y~l~~~~~~~E~~----~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLE-GAIAYRLEYEDTDVEGL----TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhc-cccceeeehhhcchhhc----cccccee
Confidence 367999999999999999875 5899999999999999999965443210 00111566777776553 4569999
Q ss_pred EEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|- .+..|. .-.||++.+.++|+|||.+.+...+...
T Consensus 163 vcs-----evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 163 VCS-----EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eeH-----HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 972 122221 2368999999999999999988776654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=99.06 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---cCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---DAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~~~ 214 (345)
.+..+||++|||.|..+..+.+..+ ..+|+++|+++.+++.+++++.-.+ -.+++++.+|+.++.. ...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-------~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-------LKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-------CCeEEEEeCChhhccccccccc
Confidence 3567899999999999998887643 4799999999999999998874322 1359999999988642 124
Q ss_pred CcccEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++||.|++|++..+. . |... ...+.++.+.+.|+|||.++....+...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 689999999875431 1 2111 1367899999999999999877655443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-08 Score=91.32 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=90.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~ 215 (345)
.+..+||+||||+|+.+..+.+... ..+|++||+++.+.+...+... . .+++..+++|++.-. ....+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~-------r~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--K-------RPNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--h-------cCCCEEEECCccChhhhhcccC
Confidence 4557899999999999999998753 4699999999975533333221 0 246889999997521 11245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
.+|+|++|... |. ....+..++++.|+|||.+++-+-....+. + .+....+.+.++.|++. |.
T Consensus 202 ~vDvV~~Dva~----pd--q~~il~~na~r~LKpGG~~vI~ika~~id~----g------~~pe~~f~~ev~~L~~~GF~ 265 (293)
T PTZ00146 202 MVDVIFADVAQ----PD--QARIVALNAQYFLKNGGHFIISIKANCIDS----T------AKPEVVFASEVQKLKKEGLK 265 (293)
T ss_pred CCCEEEEeCCC----cc--hHHHHHHHHHHhccCCCEEEEEEecccccc----C------CCHHHHHHHHHHHHHHcCCc
Confidence 79999999842 22 223456688999999999998433222210 0 00012234446888887 87
Q ss_pred CCEEEEEec
Q 038076 295 GKVSWKRMP 303 (345)
Q Consensus 295 ~~v~~~~~~ 303 (345)
.+....++
T Consensus 266 -~~e~v~L~ 273 (293)
T PTZ00146 266 -PKEQLTLE 273 (293)
T ss_pred -eEEEEecC
Confidence 55544554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=86.12 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+++. ..++++||+|+.+++.+++.+.. .++++++.+|+.++.. .+.+||
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---------~~~v~ii~~D~~~~~~-~~~~~d 79 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA---------ADNLTVIHGDALKFDL-PKLQPY 79 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---------CCCEEEEECchhcCCc-cccCCC
Confidence 34568999999999999999986 57999999999999999998742 3589999999998743 334699
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhc--cCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDR--LMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~--L~pgGvlvvn~~~~ 260 (345)
.|+.+. |.+. +.+.+..+.+. +.++|++++.....
T Consensus 80 ~vi~n~------Py~~-~~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 80 KVVGNL------PYNI-STPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred EEEECC------Cccc-HHHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 999853 3333 34555555443 45889998876533
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=91.19 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=82.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++.+... +.+++++.+|..++.....++||+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES--------GLKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc--------CCceEEEecCHHHhhhhcCCCccE
Confidence 5678999999999999888764 578999999999999999887532 235788889988876445679999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++...-. ..+ ...++++.+.+.|+|||.+++....
T Consensus 118 Ii~~~~l~-~~~---~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 118 VTCMEMLE-HVP---DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEEhhHhh-ccC---CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99843211 111 2357899999999999999887654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=96.34 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC---
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG--- 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~--- 215 (345)
++.+||++|||+|..++.+++..+ +.++++||++++|++.|++.+.-.. ..-++..+++|..+.+.-...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~------p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY------PQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC------CCceEEEEEEcccchhhhhccccc
Confidence 457899999999999999998766 5899999999999999988764210 023466789999875432221
Q ss_pred -cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCcc----chHHHHHHHHHHH
Q 038076 216 -RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMN----DVWMHNSAIRALS 290 (345)
Q Consensus 216 -~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d----~~~~~~~~~~~l~ 290 (345)
...+++++.... ..+ .-....+++.+++.|+|||.+++.+...... ... . ....| ...+..+++..++
T Consensus 137 ~~~~~~~~gs~~~-~~~-~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~-~~~-~---~aY~d~~g~t~~F~~N~L~~~n 209 (301)
T TIGR03438 137 GRRLGFFPGSTIG-NFT-PEEAVAFLRRIRQLLGPGGGLLIGVDLVKDP-AVL-E---AAYNDAAGVTAAFNLNLLRRLN 209 (301)
T ss_pred CCeEEEEeccccc-CCC-HHHHHHHHHHHHHhcCCCCEEEEeccCCCCH-HHH-H---HhhcCchhhHHHHHHHHHHHHH
Confidence 222333332221 121 2234578999999999999999766544431 000 0 00011 1135666777777
Q ss_pred HHCCC
Q 038076 291 EAFPG 295 (345)
Q Consensus 291 ~~F~~ 295 (345)
+.+.+
T Consensus 210 ~~l~~ 214 (301)
T TIGR03438 210 RELGG 214 (301)
T ss_pred HHhcc
Confidence 77654
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=90.87 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE-EEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ-VHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~-v~~gDa~~~l~~~~~~yD~ 219 (345)
...||++|||+|..-.+.- .-|+.+||.+|.+|.|-+++.+.+.... .+++. ++++|+.+..+-.+.+||.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k-------~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK-------PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred ccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc-------CcceEEEEeechhcCcccccCCeee
Confidence 4568999999999877643 2378999999999999999999885332 45676 9999999975457899999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++-+.- -.+-...+.++++++.|+|||++++-=+...+
T Consensus 149 VV~TlvL----CSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 149 VVCTLVL----CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EEEEEEE----eccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 9974311 11123468899999999999999876555443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-08 Score=89.43 Aligned_cols=108 Identities=12% Similarity=-0.056 Sum_probs=74.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.++.+||+||||+|.++..+.+. .++.+|+++|++|++++.|++... .+++++...|+... ...+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~----------~~~~~~~~~~~~~l-~~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR----------RPGVTFRQAVSDEL-VAEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc----------cCCCeEEEEecccc-cccC
Confidence 35678999999999998887753 345799999999999999998754 23455666655443 2256
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
++||+|++...-. +.++. ...++++++.+.++ |.++++-....
T Consensus 128 ~~fD~V~~~~~lh-h~~d~-~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLH-HLDDA-EVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeee-cCChH-HHHHHHHHHHHhcC--eeEEEeccccC
Confidence 7999999843221 22221 13578999999887 55556654443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-08 Score=106.60 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=88.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC---------CCCCCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK---------PTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---------~~~~~~rv~v~~gDa~~~l~ 211 (345)
+.+||+||||+|.++..+.+.+|..+|+++||+|++++.|+++......+. ......|++++++|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999998888899999999999999998875432110 00112579999999998774
Q ss_pred cCCCcccEEEEcCCCCC-----CC--------C----------CCcch-----------HHHHHHHHhccCCCcEEEEEe
Q 038076 212 DASGRYAGIVVDLFSEG-----KV--------L----------PQLEE-----------VATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~-----~~--------p----------~~l~t-----------~ef~~~~~~~L~pgGvlvvn~ 257 (345)
....+||+|+...+--. .+ | ..|.. +..+..+.++|+|||.+++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 33347999998653210 00 1 11222 456677788999999999999
Q ss_pred cCCC
Q 038076 258 GGID 261 (345)
Q Consensus 258 ~~~~ 261 (345)
+...
T Consensus 279 G~~q 282 (1082)
T PLN02672 279 GGRP 282 (1082)
T ss_pred CccH
Confidence 8544
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=91.03 Aligned_cols=99 Identities=8% Similarity=-0.040 Sum_probs=72.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
...+||++|||+|.++..+.+.. +..+|++||||+.+++.|++.. ++++++.+|...+. .+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------------~~~~~~~~D~~~~~--~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------------PEATWINADALTTE--FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------------cCCEEEEcchhccc--ccCC
Confidence 36799999999999999888753 3579999999999999999764 24789999998753 3568
Q ss_pred ccEEEEcCCCCC-CCC-------CCcchHHHHHHHHhccCCCcE
Q 038076 217 YAGIVVDLFSEG-KVL-------PQLEEVATWLKLKDRLMPNGR 252 (345)
Q Consensus 217 yD~Ii~D~f~~~-~~p-------~~l~t~ef~~~~~~~L~pgGv 252 (345)
||+||++.+-.. ... ..+....+++.+.+++++|+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999753321 111 113345678888875555554
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=91.35 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=93.3
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~I 220 (345)
-+|+||||.|.....++..+|+..+.+||+....+..|.+...... -+++.++.+||..++.. .+++.|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-------l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-------LKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-------TSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-------ccceEEEEccHHHHHhhcccCCchheE
Confidence 6899999999999999999999999999999999998876664322 46899999999998765 46899999
Q ss_pred EEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 221 VVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 221 i~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
.+-.++++. .-..+.+.+|++.+.+.|+|||.+-+-.-. ......++..+.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-------------------~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV-------------------EEYAEWMLEQFEES 149 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES--------------------HHHHHHHHHHHHHH
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC-------------------HHHHHHHHHHHHhc
Confidence 997777642 124488999999999999999988543321 14566777777765
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-08 Score=93.56 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHH---HHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKV---RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A---~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.++||+||||+|.+...+....+ ..|++||+++.++..+ +++.. .++++++...|..+.- ...
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~---------~~~~v~~~~~~ie~lp--~~~ 187 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD---------NDKRAILEPLGIEQLH--ELY 187 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc---------cCCCeEEEECCHHHCC--CCC
Confidence 3568999999999999888876543 5899999999998643 34432 1357888888876642 235
Q ss_pred cccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++-. +..|. .-.++++++++.|+|||.+++...
T Consensus 188 ~FD~V~s~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 188 AFDTVFSMG-----VLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CcCEEEEcc-----hhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 899999732 11122 124799999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=95.15 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHH---HhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR---DYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~---~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.++||+||||+|..+..+++..+ ..|+++|+++.++..++ ++.+ .+++++++.+|+.+. .. +++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~---------~~~~i~~~~~d~e~l-p~-~~~ 189 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG---------NDQRAHLLPLGIEQL-PA-LKA 189 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC---------CCCCeEEEeCCHHHC-CC-cCC
Confidence 468999999999999998887644 46999999999886533 2222 145799999998775 32 678
Q ss_pred ccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+|++-. ...|. ...++++++++.|+|||.+++...
T Consensus 190 FD~V~s~~-----vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 190 FDTVFSMG-----VLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cCEEEECC-----hhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999721 11111 235789999999999999998754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=96.17 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++...++. +..+|+++||||..++.|+++..++.. ..++++. ...+. ..++||
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~------~~~~~v~--~~~~~---~~~~~d 227 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV------EDRIEVS--LSEDL---VEGKFD 227 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-------TTCEEES--CTSCT---CCS-EE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC------CeeEEEE--Eeccc---ccccCC
Confidence 45689999999999999988874 567999999999999999999876653 3466653 22222 348999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+.++... .-.+....+.++|+|||.+++.=.
T Consensus 228 lvvANI~~~-------vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 228 LVVANILAD-------VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EEEEES-HH-------HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEECCCHH-------HHHHHHHHHHHhhCCCCEEEEccc
Confidence 999876442 124577788899999999987544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=87.33 Aligned_cols=90 Identities=4% Similarity=-0.063 Sum_probs=69.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+.. +.+|+++|++++|++.|++.. ..+++|+.+. .-.+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~---------------~~~~~d~~~l-p~~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD---------------DKVVGSFEAL-PFRDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc---------------ceEEechhhC-CCCCCCEEE
Confidence 46899999999999999998875 579999999999999998631 1357888763 446789999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPN 250 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg 250 (345)
|++-. .-...+ ...+.++++++.|+|.
T Consensus 114 v~~~~-~l~~~~---d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 114 VMSSF-ALHASD---NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEecC-hhhccC---CHHHHHHHHHHHhcCc
Confidence 99832 211221 2357899999999994
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=88.63 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+.+||++|||+|.++..+.+. +.+++++|+++.+++.+++.+.... ..++++..+|+.++....+.+||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-------LLKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEeCCHHHhhcCCCCCccE
Confidence 4679999999999999888764 4579999999999999999875322 125888999998876544578999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|++...-. ... ...++++.+++.|+|||.+++.....
T Consensus 116 i~~~~~l~-~~~---~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 116 VTCMEVLE-HVP---DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EEehhHHH-hCC---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99742111 111 23578999999999999988766543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=88.32 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.++|+||||.|..+.+|++. +..|++||+++.-++.+++..... +-.++....|..++- .++.||
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~--------~l~i~~~~~Dl~~~~--~~~~yD 96 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE--------GLDIRTRVADLNDFD--FPEEYD 96 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT--------T-TEEEEE-BGCCBS---TTTEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc--------CceeEEEEecchhcc--ccCCcC
Confidence 36889999999999999999985 789999999999998877654322 223888999987763 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+...... ..+.. .-...++.+++.++|||.+++.+.
T Consensus 97 ~I~st~v~~-fL~~~-~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 97 FIVSTVVFM-FLQRE-LRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEESSGG-GS-GG-GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEEec-cCCHH-HHHHHHHHHHhhcCCcEEEEEEEe
Confidence 999753221 22222 336789999999999999887543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=89.52 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=79.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-----CCCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-----KPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-----~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+||++|||.|..+.+|+++ +.+|++||++|..++.+.+.-++.... ...+...+++++++|..++-....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 4579999999999999999874 789999999999999875433332100 011235789999999999754334
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..||.|+--..-. .+|++ ...++++.+.+.|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~-~l~~~-~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALI-ALPEE-MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHh-hCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 6899988422111 23322 356789999999999986433
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=93.03 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCCEEEEeecccH----HHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhcCC-------CC---------CCCC--
Q 038076 140 PNGPIAIYGLGGGT----AAHLMLDLWP-----SLKLEGWEIDEILIDKVRDYFGL-------SD---------LEKP-- 192 (345)
Q Consensus 140 ~p~~VLiIG~G~G~----~~~~l~~~~p-----~~~v~~VEidp~vi~~A~~~f~~-------~~---------~~~~-- 192 (345)
++.+|+++|||+|. ++..+.+..+ +.+|+++|||+.+++.|++...- ++ ..+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999994 6666666543 47999999999999999974310 00 0000
Q ss_pred --CCCCCcEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 193 --TATGGVLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 193 --~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..-..++++..+|..+.- ...++||+|++- ++. +++ .-...++++.+.+.|+|||.+++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~--yf~-~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLI--YFD-EPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHH--hCC-HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 001246888888988742 236789999982 111 111 113457999999999999999863
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-08 Score=86.69 Aligned_cols=109 Identities=12% Similarity=-0.119 Sum_probs=81.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---SG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~~ 215 (345)
.+..++|+++||+|+++.+++.+. ..+|+.||+|+..++.++++...... ..+++++.+|+.+++... ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~------~~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS------GEQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------cccEEEEehhHHHHHHHhhccCC
Confidence 356889999999999999999863 46899999999999999998754431 347999999998887532 23
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~ 259 (345)
.||+|++|.+-... ...+.++.+. ..|+++|++++-...
T Consensus 121 ~~dvv~~DPPy~~~-----~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 121 FDNVIYLDPPFFNG-----ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CceEEEECcCCCCC-----cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 58999998644321 2344555543 358999999876554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=91.34 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=79.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+ ++.+|++||+++.+++.|++...... -++++++.+|+.++.....++||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~-------l~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELG-------LTNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEcCHHHHHHhcCCCCeE
Confidence 468899999999999999987 35799999999999999998875332 247999999999886544467999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++|.+..+ ...+..+.+ ..++|++++.+.|....
T Consensus 244 Vv~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 244 VLVNPPRRG------IGKELCDYL-SQMAPRFILYSSCNAQT 278 (315)
T ss_pred EEECCCCCC------ccHHHHHHH-HHcCCCeEEEEECCccc
Confidence 999854221 223333333 44788888877776443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-08 Score=95.68 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=88.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
..++||.+=|=||..+.+.+.. +..+||.||++...++.|++++.++.. ...+++++++|+.+|++. .+++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~-----~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGL-----DGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCC-----CccceeeehhhHHHHHHHHHhcCCc
Confidence 3789999999999999887752 335999999999999999999988764 367899999999999976 3569
Q ss_pred ccEEEEcCCCCCCCCCCcc--h---HHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE--E---VATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~--t---~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+||+|.++=..-+.... . .+....+.+.|+|||++++-.....
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999755321121111 1 2456678899999999876444333
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=8e-08 Score=87.56 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+|+++|++|++++.|++.+.... ...+++++++|+.+. +++||
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~----~~~fD 121 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD------VAGNVEFEVNDLLSL----CGEFD 121 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEECChhhC----CCCcC
Confidence 35789999999999999999874 5699999999999999999875322 124799999998764 27899
Q ss_pred EEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|++ ++.. ..+.. .-.++++.+.+.+++++++.+
T Consensus 122 ~ii~~~~l~--~~~~~-~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 122 IVVCMDVLI--HYPAS-DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEEhhHHH--hCCHH-HHHHHHHHHHHHhCCCEEEEE
Confidence 9986 3322 11111 124578888888887766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6e-08 Score=98.48 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-cccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~~~~~~yD 218 (345)
+.++||+||||+|.++..+.+. ..+|++||+++.+++.+++..+. .++++++.+|+... +...+++||
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~---------~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH---------YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc---------CCceEEEEecccccccCCCCCCEE
Confidence 4568999999999999999876 35899999999999988774431 35789999999742 233467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++...-. .++.. ...++++.+++.|+|||.+++.
T Consensus 106 ~I~~~~~l~-~l~~~-~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 106 LIFSNWLLM-YLSDK-EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEehhhhHH-hCCHH-HHHHHHHHHHHhcCCCeEEEEE
Confidence 999854221 11111 1357899999999999999874
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-08 Score=81.78 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+.++||+||||.|.++..+.+. +.+++++|+++.+++. ... ........ . ....+++|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~~-------------~~~~~~~~--~-~~~~~~~f 79 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RNV-------------VFDNFDAQ--D-PPFPDGSF 79 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TTS-------------EEEEEECH--T-HHCHSSSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hhh-------------hhhhhhhh--h-hhccccch
Confidence 467889999999999999999664 3499999999999998 110 11111111 1 12256899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++-..- .+++ .-.++++.+.+.|+|||.+++......
T Consensus 80 D~i~~~~~l-~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 80 DLIICNDVL-EHLP---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEEEESSG-GGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhHhhHHHH-hhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999984211 1222 246899999999999999999888654
|
... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-08 Score=88.14 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=91.4
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~ 219 (345)
.-+|+||||.|.....+++..|+..+.+||+...++..|-+.....+ -++++++.+||...+.. .+.+.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-------l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-------LKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-------CCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 46899999999999999999999999999999999999888775433 23899999999998876 3449999
Q ss_pred EEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++.-.+++.= --.+...+|++.+.+.|+|||.+-+-.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 99987776531 134889999999999999999996543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.8e-08 Score=88.55 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=76.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++|++||+|.|..+..+++.+|+.++++.|+ |+|++.+++ . +|++++.+|..+ ..+. +|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~---------~rv~~~~gd~f~---~~P~-~D 160 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A---------DRVEFVPGDFFD---PLPV-AD 160 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T---------TTEEEEES-TTT---CCSS-ES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c---------cccccccccHHh---hhcc-cc
Confidence 4567899999999999999999999999999999 999999998 1 589999999874 3345 99
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCC--cEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN--GRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg--Gvlvvn~ 257 (345)
+|++--.-+.. + .-.....++++++.|+|| |.+++.=
T Consensus 161 ~~~l~~vLh~~-~-d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 161 VYLLRHVLHDW-S-DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ceeeehhhhhc-c-hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99984322211 1 123467899999999999 9877753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=93.69 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||++|||+|.++..+.+. ..+|++||+++.+++.|++++.... -.+++++.+|+.+++.. ...
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~-------~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG-------IANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC-------CCceEEEeCCHHHHHHHHHhcCC
Confidence 34578999999999999998875 3589999999999999999886433 24799999999887643 245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++|....+ ...++++.+. .++|++++.+.|.
T Consensus 362 ~~D~vi~dPPr~G------~~~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 362 IPDVLLLDPPRKG------CAAEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred CCCEEEECcCCCC------CCHHHHHHHH-hcCCCEEEEEcCC
Confidence 7999999865432 2356777665 4899998766554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=94.33 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||++|||+|.++..+++.. .+|+++|+++.+++.|+++..... -.+++++.+|+.+++.. .++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG-------LDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEeChHHhhhhhhhhcC
Confidence 345789999999999999988763 699999999999999999875432 23699999999887642 246
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|++|..-.+ ..+.++.+.+ ++|++++.+.|..
T Consensus 367 ~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 367 GFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred CCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEeCh
Confidence 7999999854321 1355555544 7999998888753
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.2e-08 Score=87.60 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC-------------------------
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT------------------------- 193 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~------------------------- 193 (345)
..++.+|+|||-.|.++..+++.+....|.+|||||..|+.|+++...+......
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999999998899999999999999999987654311000
Q ss_pred ----------CCCCcEEEEEcccccccccCCCcccEEEEcCCCCC-CCCCC-cchHHHHHHHHhccCCCcEEEEE
Q 038076 194 ----------ATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG-KVLPQ-LEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 194 ----------~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~-~~p~~-l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+...+..+ +--+||......||+|+|=.-+.+ +.-.+ ---.+||+.+.++|.|||++++-
T Consensus 137 ~t~~~p~n~~f~~~n~vl---e~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVL---ESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEE---ecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00111111 111233335688999987332221 11111 12368999999999999999863
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=91.05 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=80.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|.++..+.. ++.+|++||+||..++.|+++..... -.+++++.+|+.+++....++||+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~-------~~~~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLG-------LDNLSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEECCHHHHHHhcCCCCCE
Confidence 457899999999999998885 35799999999999999999875433 237999999999887543456999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|.+.. -...++++.+. .++|++++.+.|.
T Consensus 304 vi~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 304 VLVNPPRR------GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred EEECCCCC------CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 99985432 13356666664 4899999887775
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=86.70 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred hccccCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc
Q 038076 134 SLPAIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 134 ~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~ 212 (345)
++.....++++++||.=+|..+...+...| +.+|+++|+|++-.+++.++-.... -+..++++++++.+-|.+
T Consensus 67 ~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag------v~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 67 MLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG------VDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc------ccceeeeeecchhhhHHH
Confidence 333345789999999988876666555544 6999999999999999987766554 367899999999988754
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -----ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -----~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
....||.+|+|++...+ . .+++.+.+.+++||+++++
T Consensus 141 l~~~~~~~tfDfaFvDadK~nY------~-~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDADKDNY------S-NYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHhcCCCCceeEEEEccchHHH------H-HHHHHHHhhcccccEEEEe
Confidence 46889999999877543 2 7899999999999999985
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=93.88 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=82.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||+++||+|..+..+....+..+|+++|+||..++.++++..... -.+++++.+|+..++.. .++||+|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-------~~~~~v~~~Da~~~l~~-~~~fD~V~ 130 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-------LENEKVFNKDANALLHE-ERKFDVVD 130 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCceEEEhhhHHHHHhh-cCCCCEEE
Confidence 58999999999999998776565699999999999999999886543 23467999999998754 56799999
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|.|.. ..+|++.+.+.++++|++.+.
T Consensus 131 lDP~Gs--------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 131 IDPFGS--------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ECCCCC--------cHHHHHHHHHHhcCCCEEEEE
Confidence 997621 247888878889999999887
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=80.59 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred hHH-HHHhhccccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 127 SYW-DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 127 ~Y~-~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
+|+ +.|+..........||++|.|+|.+++.++++ .+...++.+|.|++.+..-.+.|. .++++.|
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------------~~~ii~g 101 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------------GVNIING 101 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------------Ccccccc
Confidence 344 44544433345668999999999999999986 456899999999999999888763 3569999
Q ss_pred cccccc---c-cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 205 DVFSPS---E-DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 205 Da~~~l---~-~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+.+.- . .....||.||+.+.-- .+|.+ .+.+.++.+..+|..||.++.-..++
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll-~~P~~-~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLL-NFPMH-RRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccc-cCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 998742 1 2567899999866443 23333 57789999999999999998765553
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=84.30 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=70.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++.+.... ...+++++.+|. . ...+.||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~-~---~~~~~fD 129 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG------LAGNITFEVGDL-E---SLLGRFD 129 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC------CccCcEEEEcCc-h---hccCCcC
Confidence 35678999999999999998875 3579999999999999999885332 125789999993 2 2457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
+|++...-. ..+.. .....++.+.+.+++++++
T Consensus 130 ~v~~~~~l~-~~~~~-~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 130 TVVCLDVLI-HYPQE-DAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EEEEcchhh-cCCHH-HHHHHHHHHHhhcCCeEEE
Confidence 998732110 11111 2245667777766544443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-07 Score=82.83 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=73.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..|||+||||.|.+..+|.+. .+.+..+||||++-+..|.+. .+.++++|.-+-|.. .+++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r--------------Gv~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR--------------GVSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc--------------CCCEEECCHHHhHhhCCCCCc
Confidence 45689999999999999998875 589999999999988888764 367999999998864 78999
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|.||+. ..+..-....+.++ +.|+=|...++.+.+
T Consensus 77 D~VIls----qtLQ~~~~P~~vL~---EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 77 DYVILS----QTLQAVRRPDEVLE---EMLRVGRRAIVSFPN 111 (193)
T ss_pred cEEehH----hHHHhHhHHHHHHH---HHHHhcCeEEEEecC
Confidence 999983 12111112234444 445556666666654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-07 Score=78.90 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.+.|+++|||+|.++...+- +...+|.+||+||+.+++++++..- + ..++.++++|..++ ..++|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~--l------~g~v~f~~~dv~~~----~~~~dt 111 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE--L------LGDVEFVVADVSDF----RGKFDT 111 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh--h------CCceEEEEcchhhc----CCccce
Confidence 567899999999999987764 4668999999999999999998753 1 56899999999987 678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhcc
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRL 247 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L 247 (345)
++++.+-+.. -.+ .+.+|++.+.+.-
T Consensus 112 vimNPPFG~~-~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 112 VIMNPPFGSQ-RRH-ADRPFLLKALEIS 137 (198)
T ss_pred EEECCCCccc-ccc-CCHHHHHHHHHhh
Confidence 9987644322 223 6778888776654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-07 Score=84.06 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..++|++-+|+|+++.+.+.+ ...+|+.||.|+..++..+++...-.. ..+.+++.+|+..++.. ..+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~------~~~~~v~~~d~~~~l~~~~~~~~ 113 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGL------EDKIRVIKGDAFKFLLKLAKKGE 113 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-------GGGEEEEESSHHHHHHHHHHCTS
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCC------CcceeeeccCHHHHHHhhcccCC
Confidence 45789999999999999998875 568999999999999999988753221 34799999999988854 478
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~~~ 261 (345)
+||+|++|.+-.. ...-.+.++.+. ..|+++|++++-.....
T Consensus 114 ~fDiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 114 KFDIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLIIIEHSKKE 157 (183)
T ss_dssp -EEEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred CceEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 9999999853221 111256777766 77999999999887654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.4e-07 Score=85.67 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. +.+|+++|+++.|++.|++........ .....++++..+|..+. +++||+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~f~~~Dl~~l----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAA--LPPEVLPKFEANDLESL----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccc--cccccceEEEEcchhhc----CCCcCE
Confidence 4579999999999999999874 579999999999999999886421100 00134678888887543 578999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++ |... ++|.. .-.++++.++ .+.++|+++
T Consensus 216 Vv~~~vL~--H~p~~-~~~~ll~~l~-~l~~g~liI 247 (315)
T PLN02585 216 VTCLDVLI--HYPQD-KADGMIAHLA-SLAEKRLII 247 (315)
T ss_pred EEEcCEEE--ecCHH-HHHHHHHHHH-hhcCCEEEE
Confidence 986 2221 12221 1234566665 456776655
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=84.49 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=76.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+...|+++-||-|.++..++++.+...|.++|++|..++..++...+... +.++.++.+|+++++. ...+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv------~~~i~~~~~D~~~~~~--~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV------ENRIEVINGDAREFLP--EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-------TTTEEEEES-GGG-----TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC------CCeEEEEcCCHHHhcC--cccc
Confidence 3567899999999999999998876778999999999999999998876653 5689999999999986 7899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|-|+++.+. .+.+|+..+.+.+++||++-
T Consensus 171 drvim~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 999996533 34579999999999999873
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=83.92 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=73.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||.|.++..+++. ..+++++|+|+.+++.+++.+.... ..++++++.+|+.++ ....|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~------~~~~v~ii~~Dal~~---~~~~~ 102 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP------LASKLEVIEGDALKT---EFPYF 102 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC------CCCcEEEEECCHhhh---ccccc
Confidence 345678999999999999999875 4689999999999999999875321 146899999999875 23578
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn 256 (345)
|.|+.++ |....+...++.+...- -...+++++
T Consensus 103 d~VvaNl------PY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 103 DVCVANV------PYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CEEEecC------CcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 9988643 44445556666654322 224455553
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=80.24 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE----EcccccccccCCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH----IGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~----~gDa~~~l~~~~~ 215 (345)
.+..+|++|||+|.++..+++..|..++++||.++..+.+|.++.....+ ..++.++ .+|...-.+...+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l------~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL------SGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh------cCceEEEecccccccccccccccC
Confidence 45579999999999999999999999999999999999999987753332 4677777 4455444333568
Q ss_pred cccEEEEcCCCC---CC----------CC-CCc--------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSE---GK----------VL-PQL--------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~---~~----------~p-~~l--------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++|+|+++..-- +. .| ..| .-..++..+.++|.|||.+.+++.....
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 999999864221 00 00 000 1234677889999999999999986654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-08 Score=90.77 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD~ 219 (345)
-+++|+||||+|-.+..+... ..++++|||+..|++.|.+.-.+. ++.++|+..|++ .++++||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD------------~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYD------------TLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchH------------HHHHHHHHHHhhhccCCcccc
Confidence 478999999999999988865 468999999999999999865433 467789999997 57899999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.. |+.. + ...| ..+|..+...|+|||.+++.+-..+.
T Consensus 192 i~AaDVl~--Y-lG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 192 IVAADVLP--Y-LGAL--EGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred hhhhhHHH--h-hcch--hhHHHHHHHhcCCCceEEEEecccCC
Confidence 985 3322 1 1111 34788899999999999998876554
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=91.74 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.|+++|+|.|.+....++.. ...+|.+||-+|..+...++.....+ -+.+++++.+|.+++ ..+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~------w~~~V~vi~~d~r~v--~lpek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG------WGDKVTVIHGDMREV--ELPEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT------TTTTEEEEES-TTTS--CHSS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC------CCCeEEEEeCcccCC--CCCCc
Confidence 3569999999999987766532 34899999999987766544321112 146899999999998 35779
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.|+||...-.. ....-...|.+....+.|+|||+++
T Consensus 259 vDIIVSElLGs--fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGS--FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BT--TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCC--ccccccCHHHHHHHHhhcCCCCEEe
Confidence 99999866542 2222256788988999999999986
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=86.37 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=89.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++++|.|.=+.+++.... ...|+++|+++.-++..++++.--. -.++.+...|++.+....++.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-------~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-------VSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEeCchhhhhhhchhhc
Confidence 4568899999999998888887654 3799999999999999887764222 2468899999998654456789
Q ss_pred cEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. + |... ...+.+..+.+.|+|||+++....+...
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999999987643 1 1111 2367888999999999999877666554
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-07 Score=88.36 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=85.3
Q ss_pred CCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-+||++.+|+|..+..+++..+ ..+|+++|+||..++.++++..+.. -.+++++.+|+..++....++||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-------~~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-------VENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEchhHHHHHHHhCCCCCEE
Confidence 4799999999999999887643 4799999999999999999886543 2368999999999987666789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
++|.|.. ..+|++.+.+.++++|++.+.+
T Consensus 119 dlDPfGs--------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 119 DIDPFGT--------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EeCCCCC--------cHHHHHHHHHhcccCCEEEEEe
Confidence 9998642 1369999999999999998874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-07 Score=80.15 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=87.4
Q ss_pred HHHHHhhcc-ccCCCCCEEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCC---CCCCCCCcEEE
Q 038076 128 YWDEFVSLP-AIVPNGPIAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLE---KPTATGGVLQV 201 (345)
Q Consensus 128 Y~~~~~~l~-~~~~p~~VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~---~~~~~~~rv~v 201 (345)
|..+|..|- .+.+..+.|++|.|+|.++..+...- ++...++||.-|++++.++++....-.+ -.-++.+++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 444444442 34567899999999999998887653 3455699999999999999877532210 11245789999
Q ss_pred EEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 202 HIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 202 ~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||+|.- .....+||.|.+-+-.+ +.-+.+...|++||.+++-+.
T Consensus 149 vvGDgr~g-~~e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 149 VVGDGRKG-YAEQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EeCCcccc-CCccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEeec
Confidence 99999985 34678999999965332 234566778999999988766
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=79.28 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=84.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-----CCCCCCCCCcEEEEEcccccccc--c
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-----LEKPTATGGVLQVHIGDVFSPSE--D 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----~~~~~~~~~rv~v~~gDa~~~l~--~ 212 (345)
+..+||+.|||.|.-+.+|++. +.+|++||++|..++.+.+-.++.. .....+...+++++++|..++-. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4579999999999999999874 6789999999999999876443321 00112335689999999999732 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
...+||+|+--.+- ..+|++ ....+.+.+.+.|+|||.++.-+...+
T Consensus 121 ~~~~fD~VyDra~~-~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 121 NLPVFDIWYDRGAY-IALPND-LRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ccCCcCeeeeehhH-hcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 23689998742222 134443 456789999999999998776554333
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=86.14 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=76.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-------
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA------- 213 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~------- 213 (345)
+.+||++|||+|+++..+.+.. .+|++||+++++++.|+++..... -.+++++.+|+.+++...
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-------IDNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEEcCHHHHHHHHhhccccc
Confidence 3579999999999999888764 489999999999999999886443 236999999999987531
Q ss_pred --C------CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 214 --S------GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 214 --~------~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
. .+||+|++|.+..+ ...++++.+.+ |++++.+.|..
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR~G------~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPRAG------LDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred cccccccccCCCCEEEECCCCCC------CcHHHHHHHHc---CCcEEEEEcCH
Confidence 1 24899999975432 23456666544 78888877763
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-06 Score=79.43 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=100.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEE-cccccccc---cCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHI-GDVFSPSE---DAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~-gDa~~~l~---~~~ 214 (345)
+..++|+||||+|.+...+....++.+++++||||..++.|++..... .+ ..+++++. .|...... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l------~~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL------NGAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC------cCcEEEEEccchhhhhhcccccC
Confidence 457899999999988877777777899999999999999999988654 22 45788865 34333322 246
Q ss_pred CcccEEEEcCCCCCCCCC-CcchHHHHH----------------HHHhccCCCcEEEEEecCCCCCCc-cccCCCCCCCc
Q 038076 215 GRYAGIVVDLFSEGKVLP-QLEEVATWL----------------KLKDRLMPNGRFMVNCGGIDGVSD-MTYGAARPKSM 276 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~-~l~t~ef~~----------------~~~~~L~pgGvlvvn~~~~~~~~~-~~~g~~~~~~~ 276 (345)
++||+|++..+-..+... ...+..-.+ ...+++.+||.+.+-......... .....|+.++-
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEe
Confidence 789999996422111000 000111122 233456677775432221111000 11223444432
Q ss_pred cchHHHHHHHHHHHHHCCCCEEEEEecCCC-CceEEEEeC-CCCCchhhhh
Q 038076 277 NDVWMHNSAIRALSEAFPGKVSWKRMPERN-GENFLALTG-LLPDLSSWSA 325 (345)
Q Consensus 277 d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~-~~n~v~~a~-~~p~~~~~~~ 325 (345)
-+..-++.+++.|++.=-..+.+.++..+. ...+++.+- +.+....|..
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~~~~~~ 318 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQRRRWVN 318 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHhHHHHH
Confidence 222347788888887633355555655432 233344432 2233445543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.4e-07 Score=84.39 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=80.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+.++||.+=+=+|+++.+.+. .+..+|+.||++...++.|++++.++.. ...+++++.+|+.+|++. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~-----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGL-----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT------CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEEecCHHHHHHHHhcCCC
Confidence 3578999999999999988775 2446899999999999999999987653 246899999999999864 4579
Q ss_pred ccEEEEcCCCCCCCCCCcc--hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE--EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~--t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+||+|.++-..-...+. -.+.+..+.+.|+|||.+++...+..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 9999999754211011111 12456678888999999875544433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=86.22 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=76.8
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-------- 213 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-------- 213 (345)
.++|+++||+|+++..+.+.. .+|++||+++.+++.|+++..... -.+++++.+|+.++++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-------IDNVQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEEECCHHHHHHHHhhcccccc
Confidence 579999999999999887753 589999999999999999875443 237999999999987531
Q ss_pred -------CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 214 -------SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 214 -------~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..+||+|++|.+..+ ...+.++.+.+ |++++.+.|..
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G------~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAG------LDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cccccccCCCCCEEEECCCCCC------CcHHHHHHHHc---cCCEEEEEeCH
Confidence 225999999965421 33556666654 78888877764
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.8e-06 Score=76.19 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.=||+||||+|..+..+.. ++-...+|||+|.|+++|.+.- +. -.++.+|.-+-+...++.||.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e-~e-----------gdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERE-LE-----------GDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhh-hh-----------cCeeeeecCCCCCCCCCccceE
Confidence 56699999999999988765 5689999999999999998721 11 3477788888787789999988
Q ss_pred EE--------cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 221 VV--------DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 221 i~--------D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
|+ .+....+.| ..--..||..+...|++|+..++++...... +.-.-+-++++.-
T Consensus 117 ISISAvQWLcnA~~s~~~P-~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~----------------q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVP-KKRLLRFFGTLYSCLKRGARAVLQFYPENEA----------------QIDMIMQQAMKAG 179 (270)
T ss_pred EEeeeeeeecccCccccCh-HHHHHHHhhhhhhhhccCceeEEEecccchH----------------HHHHHHHHHHhhc
Confidence 74 222222222 2223468999999999999999998855541 2333455677888
Q ss_pred CCCCEE
Q 038076 293 FPGKVS 298 (345)
Q Consensus 293 F~~~v~ 298 (345)
|.+-+.
T Consensus 180 F~GGlv 185 (270)
T KOG1541|consen 180 FGGGLV 185 (270)
T ss_pred cCCcee
Confidence 987654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.41 E-value=8e-07 Score=81.49 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-CCC----CCCCCCcEEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-LEK----PTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~----~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
.++.+||+.|||.|.-..+|.+. +.+|++||++|..++.+.+.-+..+ ... ..+...+++++.+|..++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 44679999999999999999985 6799999999999999854333211 000 1134678999999999964444
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
.++||+|+=-.+- ..+|+. ...++.+.+++.|+|||.+
T Consensus 114 ~g~fD~iyDr~~l-~Alpp~-~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 VGKFDLIYDRTFL-CALPPE-MRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHSEEEEEECSST-TTS-GG-GHHHHHHHHHHCEEEEEEE
T ss_pred cCCceEEEEeccc-ccCCHH-HHHHHHHHHHHHhCCCCcE
Confidence 4589999842222 234443 5678899999999999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-07 Score=81.11 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++|+.|+|-|.+++.++-.. -.+|+.||..+..++.|+++++-.. ..-.+++..-..+|-. .+.+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-------~~v~~~~~~gLQ~f~P-~~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-------PRVGEFYCVGLQDFTP-EEGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-------CCEEEEEES-GGG-----TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-------CCcceEEecCHhhccC-CCCcEeE
Confidence 35789999999999999876432 3799999999999999999987411 2335556565556632 3579999
Q ss_pred EEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEE--EecCCC
Q 038076 220 IVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMV--NCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvv--n~~~~~ 261 (345)
|.+- -...||.+ .+|++.|++.|+|||++++ |+....
T Consensus 126 IW~Q-----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 126 IWIQ-----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp EEEE-----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred EEeh-----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 9983 22344544 4689999999999999998 776544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-06 Score=78.55 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=63.2
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.+.......+..+||+||||.|.++..+.+. ..++++||+|+.+++.+++.+.. .++++++++|+.++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---------~~~v~ii~~D~~~~ 87 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---------AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---------CCCEEEEEeccccC
Confidence 33333333345689999999999999999986 46899999999999999998742 35899999999875
Q ss_pred cccCCCcccEEEEcC
Q 038076 210 SEDASGRYAGIVVDL 224 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~ 224 (345)
- -..||.|+..+
T Consensus 88 ~---~~~~d~Vv~Nl 99 (258)
T PRK14896 88 D---LPEFNKVVSNL 99 (258)
T ss_pred C---chhceEEEEcC
Confidence 2 24589998754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=79.98 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=57.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+++..+ +|+++|+|+.+++.+++.+. +++++++++|+.++- -.+..+|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~----------~~~v~~i~~D~~~~~-~~~~~~~ 107 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA----------EDNLTIIEGDALKVD-LSELQPL 107 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc----------cCceEEEEChhhcCC-HHHcCcc
Confidence 4567899999999999999998753 89999999999999998763 257999999999862 1111157
Q ss_pred EEEEc
Q 038076 219 GIVVD 223 (345)
Q Consensus 219 ~Ii~D 223 (345)
.|+..
T Consensus 108 ~vv~N 112 (272)
T PRK00274 108 KVVAN 112 (272)
T ss_pred eEEEe
Confidence 77763
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=76.28 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=86.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR-- 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~-- 216 (345)
.+..++|++=+|+|+++.+.+.+ ...+++.||.|.....+.+++...-+ ...+.+++.+|+..+|+....+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~------~~~~~~~~~~da~~~L~~~~~~~~ 114 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG------LEGEARVLRNDALRALKQLGTREP 114 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC------CccceEEEeecHHHHHHhcCCCCc
Confidence 45789999999999999999975 46899999999999999999875332 2478999999999998776655
Q ss_pred ccEEEEcCCCCCCCCCCcch-HHHHHH--HHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEE-VATWLK--LKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t-~ef~~~--~~~~L~pgGvlvvn~~~~~ 261 (345)
||+|++|.+-.. .+.. ...+.. -...|+|+|.+++-.....
T Consensus 115 FDlVflDPPy~~----~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 115 FDLVFLDPPYAK----GLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred ccEEEeCCCCcc----chhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 999999964332 2221 223333 3456999999998776543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=80.86 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=80.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
+.++++|||.|-.++.+..++ .+|+++|+++.|+++|++++.... .+-..++...|...++. .+++.|+|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y------~~t~~~ms~~~~v~L~g-~e~SVDlI~ 105 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY------CHTPSTMSSDEMVDLLG-GEESVDLIT 105 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc------ccCCccccccccccccC-CCcceeeeh
Confidence 378999999998888888764 589999999999999999986442 34456666677777653 488999999
Q ss_pred EcCCCCCCCCCC-cchHHHHHHHHhccCCCc-EEEEEecCCC
Q 038076 222 VDLFSEGKVLPQ-LEEVATWLKLKDRLMPNG-RFMVNCGGID 261 (345)
Q Consensus 222 ~D~f~~~~~p~~-l~t~ef~~~~~~~L~pgG-vlvvn~~~~~ 261 (345)
+-= ..| +.-.+||+.+++.|+++| ++++++...+
T Consensus 106 ~Aq------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 106 AAQ------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred hhh------hHHhhchHHHHHHHHHHcCCCCCEEEEEEccCC
Confidence 721 122 234689999999998766 8988887643
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.4e-06 Score=76.67 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC--c
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG--R 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~--~ 216 (345)
.+..+|++||.|.|.++..|++. ..+|++||||+.+++.-++.+.. .++++++++|+.++ +-++ .
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~---------~~n~~vi~~DaLk~--d~~~l~~ 95 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP---------YDNLTVINGDALKF--DFPSLAQ 95 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc---------ccceEEEeCchhcC--cchhhcC
Confidence 34678999999999999999986 46799999999999999998862 46899999999986 2222 6
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC-CcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP-NGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p-gGvlvv 255 (345)
++.|+.. +|....|.=.+..+.....+ ..++++
T Consensus 96 ~~~vVaN------lPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVAN------LPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEc------CCCcccHHHHHHHHhccCccceEEEEe
Confidence 7888864 35555555566666666665 444444
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-06 Score=75.84 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||+||||-|.+...|++.--...+++||.++..+++|+.--.-.+ ....+++.+.|..+- ....++||+|.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~------~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG------FSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC------CCcceeEEEeeccCC-cccccceeEEe
Confidence 49999999999999999875223569999999999999986553222 133488989898774 34577888886
Q ss_pred E----cCCCC--CCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 222 V----DLFSE--GKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 222 ~----D~f~~--~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
- |+-+- ..+-..+ .-++..+.+.|+|||++++.-.+-.
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecCcc
Confidence 2 33221 1111111 3467788899999999987655444
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.3e-06 Score=76.59 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=64.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+++..+ +++++|+|+.+++.+++.+.. .++++++++|+.++- ...||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~---------~~~v~v~~~D~~~~~---~~~~d 93 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL---------YERLEVIEGDALKVD---LPDFP 93 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc---------CCcEEEEECchhcCC---hhHcC
Confidence 4567899999999999999998754 699999999999999988742 367999999998753 22566
Q ss_pred ---EEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 219 ---GIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 219 ---~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
.|+.. +|.+ .+.+.+..+.+
T Consensus 94 ~~~~vvsN------lPy~-i~~~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSN------LPYN-ISSPLIFKLLE 116 (253)
T ss_pred CcceEEEc------CChh-hHHHHHHHHhc
Confidence 66653 3433 34455555554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-05 Score=69.05 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=94.9
Q ss_pred CCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++=+++||||+|....+|.+. -|+....+.||||...+..++-.... +-++.++..|..+-++. ++.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n--------~~~~~~V~tdl~~~l~~--~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN--------RVHIDVVRTDLLSGLRN--ESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc--------CCccceeehhHHhhhcc--CCccE
Confidence 667999999999999998875 46788999999999999877655432 45688999999988865 99999
Q ss_pred EEEcCCCCCCCCCC---c-----------------chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 220 IVVDLFSEGKVLPQ---L-----------------EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 220 Ii~D~f~~~~~p~~---l-----------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
++.. ++++|.. . .+..++..+...|+|.|++.++......
T Consensus 114 LvfN---PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~----------------- 173 (209)
T KOG3191|consen 114 LVFN---PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK----------------- 173 (209)
T ss_pred EEEC---CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC-----------------
Confidence 9864 3333211 1 1456777888999999999988876654
Q ss_pred HHHHHHHHHHHHH-CCCCEEEEE
Q 038076 280 WMHNSAIRALSEA-FPGKVSWKR 301 (345)
Q Consensus 280 ~~~~~~~~~l~~~-F~~~v~~~~ 301 (345)
.+++++.+++- |...+.+.+
T Consensus 174 --p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 --PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --HHHHHHHHhhcccceeEEEEE
Confidence 46777766544 554444433
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-06 Score=74.83 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~y 217 (345)
.+..+||+||||+|.++..+.+. ...+++++|+++++++.|++. +++++.+|+.+.+. ..+++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~--------------~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR--------------GVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc--------------CCeEEEEEhhhcccccCCCCc
Confidence 35679999999999999888764 456889999999999998651 25688888876543 346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP 249 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p 249 (345)
|+|++...-. +++ ...++++++.+.+++
T Consensus 77 D~Vi~~~~l~-~~~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQ-ATR---NPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhH-cCc---CHHHHHHHHHHhCCe
Confidence 9999843111 111 234677777766553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-06 Score=72.74 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--c-cCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--E-DAS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~-~~~ 214 (345)
..++++||+||+|+|..+..+.+..+..+|+.-|.++ +++..+.+...... ...+++++..-|=-+-+ . ..+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~----~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS----LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc----cccccccCcEEEecCccccccccc
Confidence 3567899999999999998888765678999999999 99988887754320 12456777665422211 0 135
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.+||+|+. |+.-. +-.-..+++.+.+.|+++|.+++.....
T Consensus 118 ~~~D~IlasDv~Y~-----~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 118 HSFDVILASDVLYD-----EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SSBSEEEEES--S------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCCEEEEecccch-----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 68999986 54221 1244678899999999999866665544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-05 Score=74.26 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHH---HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILID---KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~---~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..++||+||||.|...-.+++. ....|.++|.++...- .++++.+. +.++ .....+.+.+.. .+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~---------~~~~-~~lplgvE~Lp~-~~~ 182 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ---------DPPV-FELPLGVEDLPN-LGA 182 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC---------CccE-EEcCcchhhccc-cCC
Confidence 5789999999999999877765 4478999999888765 34555542 2222 233456666665 788
Q ss_pred ccEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+||+= ++..|.. -.+.+.++++.|+|||.+++.....+.
T Consensus 183 FDtVF~M-----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 183 FDTVFSM-----GVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred cCEEEEe-----eehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 9999972 2333322 247899999999999999987554443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.4e-07 Score=71.13 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=47.1
Q ss_pred EEEeecccHHHHHHHHhCCC---CEEEEEECCHH---HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC-Ccc
Q 038076 145 AIYGLGGGTAAHLMLDLWPS---LKLEGWEIDEI---LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-GRY 217 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~---~~v~~VEidp~---vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-~~y 217 (345)
|+||...|..+..+++..+. .++++||..+. .-+..++ .+ ...+++++.+|..+++..-. +++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~---------~~~~~~~~~g~s~~~l~~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG---------LSDRVEFIQGDSPDFLPSLPDGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GG---------G-BTEEEEES-THHHHHHHHH--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC---------CCCeEEEEEcCcHHHHHHcCCCCE
Confidence 57998888888777765443 37999999995 3333333 11 24579999999999887644 899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|++|+.... -.....++.+.++|+|||+++++
T Consensus 71 dli~iDg~H~~-----~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDGDHSY-----EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES---H-----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEECCCCCH-----HHHHHHHHHHHHHcCCCeEEEEe
Confidence 99999974321 14456789999999999999875
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.7e-06 Score=87.53 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred CCCEEEEeecccHHHHHHHHhC-------C-----CCEEEEEECCHH---HHH-----------HHHHhcC-CCCCC---
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW-------P-----SLKLEGWEIDEI---LID-----------KVRDYFG-LSDLE--- 190 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~-------p-----~~~v~~VEidp~---vi~-----------~A~~~f~-~~~~~--- 190 (345)
.-+|+++|.|+|.......+.+ | ..++..+|.+|. -+. ++++... .+...
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3579999999998655555333 3 369999998762 221 1111110 01100
Q ss_pred -CCCCCCC--cEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 191 -KPTATGG--VLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 191 -~~~~~~~--rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+..+.+. +++++.||+++.+.....++|+|++|.|++.. .+++.+.++|..++++++|||+++.-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0011222 56789999999988777789999999999754 46789999999999999999999854
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=75.92 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCCEEEEeecccHHHHHHHH--hCCCCEEEEEECCHHHHHHHHHhcC-CCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLD--LWPSLKLEGWEIDEILIDKVRDYFG-LSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~--~~p~~~v~~VEidp~vi~~A~~~f~-~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.|++|+.||+|.=-++..+.. +.++..|+++|+||+.++.|++-.. ..+ -+.+++++.+|+.+.- ..-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~------L~~~m~f~~~d~~~~~-~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG------LSKRMSFITADVLDVT-YDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H------H-SSEEEEES-GGGG--GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc------ccCCeEEEecchhccc-ccccc
Confidence 467999999997755554443 3467899999999999999998765 222 2578999999998752 23478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHH--HHHHHCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIR--ALSEAFP 294 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~--~l~~~F~ 294 (345)
||+|++-+.-+. ..-...+.++.+.++++||..+++=....-. .++..... .++ -|.
T Consensus 193 ~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR-----------------~~LYp~vd~~~l~-gf~ 251 (276)
T PF03059_consen 193 YDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAHGLR-----------------SFLYPVVDPEDLR-GFE 251 (276)
T ss_dssp -SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--GGG-----------------GGSS----TGGGT-TEE
T ss_pred CCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecchhhH-----------------HHcCCCCChHHCC-CeE
Confidence 999998654431 1224578999999999999999875322211 11111111 112 333
Q ss_pred CCEEEEEecCCCCceEEEEeCCCCC
Q 038076 295 GKVSWKRMPERNGENFLALTGLLPD 319 (345)
Q Consensus 295 ~~v~~~~~~~~~~~n~v~~a~~~p~ 319 (345)
+...--|...-.|.++++.+.+.
T Consensus 252 --~~~~~hP~~~ViNSvv~~rk~~~ 274 (276)
T PF03059_consen 252 --VLAVVHPTDEVINSVVFARKKQV 274 (276)
T ss_dssp --EEEEE---TT---EEEEE-----
T ss_pred --EEEEECCCCCceeEEEEEEeccc
Confidence 43334466667789999887653
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=82.56 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=86.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
...-+|+||||.|.....+++.+|+..+.+||+....+..+-+.....+ -.++.++.+|+..+... .+.+.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-------l~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-------ITNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-------CCeEEEEcCCHHHHHHhcCccccc
Confidence 3456999999999999999999999999999999998877665542222 34788999987654333 457899
Q ss_pred EEEEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|++-.++++. .--.+.+.+|++.+.+.|+|||.+-+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 99998777752 22448899999999999999999853
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=71.63 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||.+|.|-|.+...+.++.|. +=..+|-+|+|.+.-|++-... ..+|.+..|-=.+.+.+ .++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e--------k~nViil~g~WeDvl~~L~d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE--------KENVIILEGRWEDVLNTLPDKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc--------ccceEEEecchHhhhccccccCc
Confidence 57899999999999999999887664 4566999999999998876432 45677776633333333 45679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE-EecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV-NCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv-n~~~~~ 261 (345)
|-|+-|.|++.+ -.+.+|++.+-+.|||+|++.. |..+.+
T Consensus 171 DGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 171 DGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred ceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 999999887532 2467899999999999999863 444333
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=77.41 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=64.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-- 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-- 215 (345)
.+...+++.+||.|..+..+++..| ..+|+++|+||++++.|++.+.- ..|++++++|..++....++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---------CCcEEEEeCCHHHHHHHHHcCC
Confidence 3456899999999999999998875 68999999999999999987631 25899999999998644333
Q ss_pred -cccEEEEcC
Q 038076 216 -RYAGIVVDL 224 (345)
Q Consensus 216 -~yD~Ii~D~ 224 (345)
++|.|++|+
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 799999987
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=67.33 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=61.5
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc
Q 038076 168 EGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL 247 (345)
Q Consensus 168 ~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L 247 (345)
++||++++|++.|++....... ...++++++++|+.+. ...+++||+|++.. .-..++ ...++++++++.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~----~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~-~l~~~~---d~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR----SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGY-GLRNVV---DRLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc----cCCCceEEEEechhhC-CCCCCCeeEEEecc-hhhcCC---CHHHHHHHHHHHc
Confidence 5899999999999876542210 0135799999999885 44677899999742 211222 3468999999999
Q ss_pred CCCcEEEEEecCCC
Q 038076 248 MPNGRFMVNCGGID 261 (345)
Q Consensus 248 ~pgGvlvvn~~~~~ 261 (345)
+|||.+++--+...
T Consensus 72 kpGG~l~i~d~~~~ 85 (160)
T PLN02232 72 KPGSRVSILDFNKS 85 (160)
T ss_pred CcCeEEEEEECCCC
Confidence 99999987666543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.3e-06 Score=78.97 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-CCCCCCC--CCCCCCcEEEEEcccccc-----c
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-GLSDLEK--PTATGGVLQVHIGDVFSP-----S 210 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~~--~~~~~~rv~v~~gDa~~~-----l 210 (345)
+..+||+|||| ||-+.++... ....+.++||+++.++.|++.. .+....+ .....-...++.+|...- +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56889999999 7778888664 4579999999999999998766 1110000 000123466788887642 1
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.....+||+|-|-.--+-..-.+-..+.+++++.++|+|||+++..+...+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 112369999987432211111222345699999999999999998877544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.9e-05 Score=68.87 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=91.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDE----ILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp----~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~- 212 (345)
.+..+||-||..+|+...++...- +...|.+||.+| +++++|++. +++--+.+||+..-+.
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-------------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-------------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-------------TTEEEEES-TTSGGGGT
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-------------CceeeeeccCCChHHhh
Confidence 456799999999999999999874 478999999999 566777773 5788899999975433
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
.-+..|+|+.|+-.++ ..+-+..++..-|++||.+++-+-...-++. .+....+++.++.|++
T Consensus 139 ~lv~~VDvI~~DVaQp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t----------~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQPD------QARIAALNARHFLKPGGHLIISIKARSIDST----------ADPEEVFAEEVKKLKE 202 (229)
T ss_dssp TTS--EEEEEEE-SSTT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS----------SSHHHHHHHHHHHHHC
T ss_pred cccccccEEEecCCChH------HHHHHHHHHHhhccCCcEEEEEEecCcccCc----------CCHHHHHHHHHHHHHH
Confidence 3469999999985432 3445677888899999987765432111000 1123678889999997
Q ss_pred H-CCCCEEEEEec
Q 038076 292 A-FPGKVSWKRMP 303 (345)
Q Consensus 292 ~-F~~~v~~~~~~ 303 (345)
. |. -.....+.
T Consensus 203 ~~~~-~~e~i~Le 214 (229)
T PF01269_consen 203 EGFK-PLEQITLE 214 (229)
T ss_dssp TTCE-EEEEEE-T
T ss_pred cCCC-hheEeccC
Confidence 4 65 33433443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.8e-05 Score=67.47 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=85.1
Q ss_pred ccchHHHHHhhccccCCCC-CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH---HHHhcCCCCCCCCCCCCCcE
Q 038076 124 WTGSYWDEFVSLPAIVPNG-PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK---VRDYFGLSDLEKPTATGGVL 199 (345)
Q Consensus 124 l~~~Y~~~~~~l~~~~~p~-~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~---A~~~f~~~~~~~~~~~~~rv 199 (345)
+..++.|.+..++.+.... +++|||.|+|--+.-+.-.+|+.+++.||-...=+.. +.+.+++ +++
T Consensus 31 ~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----------~nv 100 (184)
T PF02527_consen 31 WERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----------SNV 100 (184)
T ss_dssp HHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----------SSE
T ss_pred HHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----------CCE
Confidence 3446667777777765444 8999999999776666666799999999999876654 4455554 369
Q ss_pred EEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 200 QVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 200 ~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++++++.+ .....+||+|+.=++.+ -..+++.+...|++||.++.--+
T Consensus 101 ~v~~~R~E~--~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 101 EVINGRAEE--PEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp EEEES-HHH--TTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred EEEEeeecc--cccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 999999988 34678999999977663 13688889999999999886655
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.3e-05 Score=68.61 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=77.8
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCE---------EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLK---------LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~---------v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..|..+....+...+++--||+|++..+.....++.. +.++|+|+.+++.|++++.... ....+.
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag------~~~~i~ 91 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG------VEDYID 91 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-------CGGEE
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc------cCCceE
Confidence 3444443344567899999999999998876655555 9999999999999999885332 145689
Q ss_pred EEEcccccccccCCCcccEEEEcCCCCCCCCCC----cchHHHHHHHHhccCCCcEEE
Q 038076 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ----LEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 201 v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~----l~t~ef~~~~~~~L~pgGvlv 254 (345)
+...|+.++- ...+.+|.|+.|.+-+...... -.-.++++.+++.|++..+++
T Consensus 92 ~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 92 FIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999964 3467999999998665332211 112457778888899943443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=70.56 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=76.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
...+.++|.|+|.++....++ ..+|.++|.||...+.|+++...+. +.++.++.|||++| .-+..|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-------~~n~evv~gDA~~y---~fe~ADvv 100 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-------DVNWEVVVGDARDY---DFENADVV 100 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-------CcceEEEecccccc---ccccccee
Confidence 367899999999999777664 6899999999999999999987765 67899999999998 33789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+|..-+..-+-. .....+..+.+-|+.+|.++
T Consensus 101 icEmlDTaLi~E--~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEE--KQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcc--cccHHHHHHHHHhhcCCccc
Confidence 986544211111 12345666677788888765
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8e-05 Score=69.66 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=62.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.-||++|.|+|.++..+++. +.+|.++|+||.|+..-.+.+.-.+ ...++++++||... ..-..|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp------~~~kLqV~~gD~lK---~d~P~f 124 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP------KSGKLQVLHGDFLK---TDLPRF 124 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC------ccceeeEEeccccc---CCCccc
Confidence 356778999999999999999985 7899999999999998887774322 25789999999765 355889
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|.+|..+
T Consensus 125 d~cVsNl 131 (315)
T KOG0820|consen 125 DGCVSNL 131 (315)
T ss_pred ceeeccC
Confidence 9999755
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=4e-06 Score=74.10 Aligned_cols=126 Identities=15% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--------- 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--------- 209 (345)
++.+||+||++.|..+..++++. +..+|.+||+.+. .+ .+.+..+.+|..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~-------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP-------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc-------ccceeeeecccchhhHHHhhhhh
Confidence 45899999999999999999875 4689999999887 11 13355555554432
Q ss_pred cccCCCcccEEEEcCCCC-CCC--CCCc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 210 SEDASGRYAGIVVDLFSE-GKV--LPQL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~-~~~--p~~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
+....+++|+|++|.-.. ... ..+. .....+..+.+.|+|||.+++-+..... .
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~------------------~- 145 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE------------------I- 145 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT------------------S-
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc------------------H-
Confidence 211237999999998221 111 1111 1223455666789999999988886543 2
Q ss_pred HHHHHHHHHHCCCCEEEEEec
Q 038076 283 NSAIRALSEAFPGKVSWKRMP 303 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~~~~~~ 303 (345)
..++..+++.|. .|.+++-+
T Consensus 146 ~~~~~~l~~~F~-~v~~~Kp~ 165 (181)
T PF01728_consen 146 EELIYLLKRCFS-KVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHH-HEEEEE-T
T ss_pred HHHHHHHHhCCe-EEEEEECc
Confidence 378888888998 77766544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.8e-05 Score=69.55 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++|+||.|.|.++..+...+. +|++-|+++.|...-++. +.+++..|- | .+.+.+||+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k--------------g~~vl~~~~--w-~~~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK--------------GFTVLDIDD--W-QQTDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC--------------CCeEEehhh--h-hccCCceEE
Confidence 357899999999999999987664 699999999997654442 233443332 3 345678999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|.| .+-+-.. .-...++.+++.|+|+|++++-+
T Consensus 155 IscLNvLDRc~-----~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 155 ISCLNVLDRCD-----RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred EeehhhhhccC-----CHHHHHHHHHHHhCCCCEEEEEE
Confidence 986 2222111 12457999999999999988754
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.6e-05 Score=69.56 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=54.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC--CcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS--GRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~--~~yD~I 220 (345)
.|+++.||.|..+.++++.+ .+|++||+||.-++.|+.+...-+ -..+++++++|..+.+++.. ..+|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG------v~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG------VADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-------GGGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEeCCHHHHHhhccccccccEE
Confidence 58999999999999999874 589999999999999998875332 15689999999999876532 228999
Q ss_pred EEcCC
Q 038076 221 VVDLF 225 (345)
Q Consensus 221 i~D~f 225 (345)
++|.+
T Consensus 74 FlSPP 78 (163)
T PF09445_consen 74 FLSPP 78 (163)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99763
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=68.95 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=88.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+...|+++=+|-|.++.-++++ ...+|.++||||..++..+++..++.. ..++..+.||++.+.... ..+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v------~~~v~~i~gD~rev~~~~-~~aD 258 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKV------EGRVEPILGDAREVAPEL-GVAD 258 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCc------cceeeEEeccHHHhhhcc-ccCC
Confidence 45789999999999999888875 334599999999999999999988764 466999999999987543 7899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-|++..+. .+.+|+..+.+.++++|++-+.....+.
T Consensus 259 rIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLPK--------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 99985433 4578999999999999999877665554
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=66.22 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=92.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~~~ 215 (345)
.+...|++=|.|+|++..++.+. -|..++...|.+..-.+.|++.|..... +.++++.+.|.-. |.. ...
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi------~~~vt~~hrDVc~~GF~~-ks~ 176 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI------GDNVTVTHRDVCGSGFLI-KSL 176 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC------CcceEEEEeecccCCccc-ccc
Confidence 56678999999999999999986 4678999999999999999999965442 6789999998765 222 367
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH-HCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE-AFP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~-~F~ 294 (345)
.+|.|++|+..++...+ .+.++|+.+|.-++++. +.- +..+..+.+|++ -|-
T Consensus 177 ~aDaVFLDlPaPw~AiP---------ha~~~lk~~g~r~csFS-PCI-----------------EQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAIP---------HAAKILKDEGGRLCSFS-PCI-----------------EQVQRTCEALRSLGFI 229 (314)
T ss_pred ccceEEEcCCChhhhhh---------hhHHHhhhcCceEEecc-HHH-----------------HHHHHHHHHHHhCCCc
Confidence 89999999988754222 23458999887666654 332 456677888877 465
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3e-05 Score=71.35 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=76.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-ccc--CCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SED--ASG 215 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~~--~~~ 215 (345)
+.+||+||||.|.+.--+++..|+ ..|.++|-+|..+++.+++-+..+ .++.-.+-|.-.- +.. ..+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--------~~~~afv~Dlt~~~~~~~~~~~ 143 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--------SRVEAFVWDLTSPSLKEPPEEG 143 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--------hhhcccceeccchhccCCCCcC
Confidence 448999999999999888888777 999999999999999999877553 3444444444321 111 467
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..|+|++ +|--..+++. .-...+.++.+.|+|||.+++-
T Consensus 144 svD~it~-IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 144 SVDIITL-IFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ccceEEE-EEEEeccChH-HHHHHHHHHHHHhCCCcEEEEe
Confidence 8998875 2222233322 2245789999999999999864
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.4e-05 Score=66.95 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=47.6
Q ss_pred CCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 196 GGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+-+++++.||+++.++....++|+|+.|.|++.. .+++.+.|+|+.++++++|||+++.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-CcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4568899999999998888999999999999754 4669999999999999999999863
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.4e-05 Score=72.58 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=75.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-------CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-------WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
.+..+|++-.||+|++...+.++ .+..++.++|+|+..+.+|+-.+.+... ......+..+|...--.
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-----~~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-----DNSNINIIQGDSLENDK 119 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-----HCBGCEEEES-TTTSHS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-----ccccccccccccccccc
Confidence 34567999999999998887764 3678999999999999999876543321 12345689999765433
Q ss_pred cC-CCcccEEEEcCCCCCC------C-----------CCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 DA-SGRYAGIVVDLFSEGK------V-----------LPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 ~~-~~~yD~Ii~D~f~~~~------~-----------p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.. .++||+|+...+-... . +..-....|++.+.+.|++||.+++-+..
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 22 5799999987533221 0 00112235889999999999998776653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=69.49 Aligned_cols=124 Identities=13% Similarity=-0.012 Sum_probs=90.9
Q ss_pred cchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 125 TGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
...+.++|.-+....+...||+==||||++..++.- -++++.+.|||..|++-|+.++..-. -+...++..
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~-------i~~~~~~~~ 252 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYG-------IEDYPVLKV 252 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhC-------cCceeEEEe
Confidence 334567776666656677999999999999988764 37999999999999999998885321 134545555
Q ss_pred -ccccccccCCCcccEEEEcCCCCCC--CCCC---cchHHHHHHHHhccCCCcEEEEEec
Q 038076 205 -DVFSPSEDASGRYAGIVVDLFSEGK--VLPQ---LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 205 -Da~~~l~~~~~~yD~Ii~D~f~~~~--~p~~---l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+... .-.+.++|.|++|.+-+-. .... -.-.++++.+.+.|++||.+++...
T Consensus 253 ~Da~~l-pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 253 LDATNL-PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccC-CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 88774 3334579999999866532 1111 1235789999999999999987776
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=72.40 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCCCEEEEeecccHHHHHHHHh----CC--------------------------------------CCEEEEEECCHHHH
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL----WP--------------------------------------SLKLEGWEIDEILI 177 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~----~p--------------------------------------~~~v~~VEidp~vi 177 (345)
+...+++-+||+|+++.+.+.. .| ..+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999877542 11 23699999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccC---CCcEE
Q 038076 178 DKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM---PNGRF 253 (345)
Q Consensus 178 ~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~---pgGvl 253 (345)
+.|+++....+. ..++++..+|+.+.... ..++||+|+++.+-+......-...++|..+-+.|+ +|+.+
T Consensus 270 ~~A~~N~~~~g~------~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 270 QAARKNARRAGV------AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHcCC------CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 999998865442 45799999999886432 235799999986543322222222345554444443 66665
Q ss_pred EE
Q 038076 254 MV 255 (345)
Q Consensus 254 vv 255 (345)
++
T Consensus 344 ~l 345 (702)
T PRK11783 344 AL 345 (702)
T ss_pred EE
Confidence 44
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=70.12 Aligned_cols=118 Identities=18% Similarity=0.096 Sum_probs=81.1
Q ss_pred cccchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 123 KWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 123 ~l~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
.-+..|-.++..-..+-+.+.||++|||+|.+..+.++. +..+|.+||-+... +.|++-+...+. +..++++
T Consensus 43 VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~------~~ii~vi 114 (346)
T KOG1499|consen 43 VRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGL------EDVITVI 114 (346)
T ss_pred hhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCc------cceEEEe
Confidence 345567665554445567899999999999999998876 46899999986554 888887754442 5679999
Q ss_pred EcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHH----HhccCCCcEEE
Q 038076 203 IGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKL----KDRLMPNGRFM 254 (345)
Q Consensus 203 ~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~----~~~L~pgGvlv 254 (345)
.|...+. .=+.++.|+|+..- +-.-|+-...+..+ -+.|+|||++.
T Consensus 115 ~gkvEdi-~LP~eKVDiIvSEW-----MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 115 KGKVEDI-ELPVEKVDIIVSEW-----MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecceEEE-ecCccceeEEeehh-----hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 9988886 22359999999742 11112222222221 24599999875
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=72.25 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~y 217 (345)
+..+++++=||.|+++..+.+ ...+|++||++|+.++.|+++..... -.+++++.+|+.++.... ...+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~-------i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANG-------IDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcC-------CCcEEEEeCCHHHHhhhccccCCC
Confidence 457899999999999999985 46899999999999999999886554 344999999999998764 3678
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|.|++|.+-.+ ...++++.+. .++|..++-+.|..
T Consensus 364 d~VvvDPPR~G------~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 364 DVVVVDPPRAG------ADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CEEEECCCCCC------CCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 99999975543 3356666554 57888888777763
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00052 Score=62.72 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=82.7
Q ss_pred cchHHHHHhhccccCC-CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH---HHHhcCCCCCCCCCCCCCcEE
Q 038076 125 TGSYWDEFVSLPAIVP-NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK---VRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~-p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~---A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..+.++.....+.... +.+++|||.|+|--+.-++=.+|+.++|-+|-...=+.. +.+-+++ ++++
T Consensus 51 ~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----------~nv~ 120 (215)
T COG0357 51 QRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----------ENVE 120 (215)
T ss_pred HHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----------CCeE
Confidence 3344455555555544 799999999999666655545799999999998876554 4454553 4699
Q ss_pred EEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 201 v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
++++.+.++-..... ||+|.+-++..- ..+.+-|...+++||.+++-.+...
T Consensus 121 i~~~RaE~~~~~~~~-~D~vtsRAva~L--------~~l~e~~~pllk~~g~~~~~k~~~~ 172 (215)
T COG0357 121 IVHGRAEEFGQEKKQ-YDVVTSRAVASL--------NVLLELCLPLLKVGGGFLAYKGLAG 172 (215)
T ss_pred EehhhHhhccccccc-CcEEEeehccch--------HHHHHHHHHhcccCCcchhhhHHhh
Confidence 999999998432222 999998776642 2466778888999998765544433
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=64.42 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=85.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-- 214 (345)
.+..+||++..+.|.=+.++.....+ ..|+++|+|+.-++..+++..=-+ -.++.++..|++.+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-------~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-------VRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-------CCceEEEeccccccccccccc
Confidence 35689999999988777777766543 567999999999888877663111 2348899999988754432
Q ss_pred CcccEEEEcCCCCCC--C---CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEGK--V---LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~--~---p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++||.|++|++..+. + |.- -...+++..+.+.|+|||+++...-+...
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 369999999987643 1 211 12567888999999999999987766655
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=66.64 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
..+-||++|+|+|.+.-+.... +..+|.+||- .+|.+.|++...-+. ...|+.+|.|...+. ..+++.|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA~~Lv~~N~------~~~rItVI~GKiEdi--eLPEk~Dv 246 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYARKLVASNN------LADRITVIPGKIEDI--ELPEKVDV 246 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHHHHHHhcCC------ccceEEEccCccccc--cCchhccE
Confidence 4567999999999998776653 5689999998 578888998765332 367999999987664 36899999
Q ss_pred EEEcCCCCCCCCCCcchH---HHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEV---ATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~---ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||...-. + -|+.+ |-|-.+++.|+|+|.+.=.++
T Consensus 247 iISEPMG--~---mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 247 IISEPMG--Y---MLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred EEeccch--h---hhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 9974211 1 13333 455567899999998754433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00014 Score=68.34 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~y 217 (345)
+...|++||.|.|.+++.|++.. .++++||+|+.+++.-++.+.. +++++++.+|+.++-... ..+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~---------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS---------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT---------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh---------cccceeeecchhccccHHhhcCCc
Confidence 56889999999999999999874 8999999999999999998861 579999999999973221 2344
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
..|+.. +|.. .+..++..+..
T Consensus 99 ~~vv~N------lPy~-is~~il~~ll~ 119 (262)
T PF00398_consen 99 LLVVGN------LPYN-ISSPILRKLLE 119 (262)
T ss_dssp EEEEEE------ETGT-GHHHHHHHHHH
T ss_pred eEEEEE------eccc-chHHHHHHHhh
Confidence 566653 3432 44556666555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=68.54 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCCEEEEeeccc----HHHHHHHHhCC----CCEEEEEECCHHHHHHHHHh------------------cCCCCCCC-C-
Q 038076 141 NGPIAIYGLGGG----TAAHLMLDLWP----SLKLEGWEIDEILIDKVRDY------------------FGLSDLEK-P- 192 (345)
Q Consensus 141 p~~VLiIG~G~G----~~~~~l~~~~p----~~~v~~VEidp~vi~~A~~~------------------f~~~~~~~-~- 192 (345)
+-+|...||++| +++..+.+..+ ..+|++.|||+.+++.|++- |.-..... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 468999999999 56666666432 37899999999999998753 21000000 0
Q ss_pred ----CCCCCcEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 193 ----TATGGVLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 193 ----~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..-..++++...|..+.--...++||+|+|- ++- +. ..-.....++.+.+.|+|||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli--yF-~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI--YF-DKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh--cC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0012455666666654211124789999982 211 11 112456789999999999999864
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=59.83 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCCCEEEEeecccH-HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGT-AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~-~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+++++++||+|.|. ++..|.+. +.+|+++|+||..++.+++.. ++++.+|..+---..-+.+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~--------------~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG--------------LNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC--------------CeEEECcCCCCCHHHHhcCC
Confidence 45789999999995 88777753 689999999999999887752 56888888764222347788
Q ss_pred EEEE
Q 038076 219 GIVV 222 (345)
Q Consensus 219 ~Ii~ 222 (345)
+|..
T Consensus 80 liys 83 (134)
T PRK04148 80 LIYS 83 (134)
T ss_pred EEEE
Confidence 9884
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00033 Score=72.26 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP--------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS- 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p--------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l- 210 (345)
...+|++.|||+|.+...+.+..+ ...++++|||+..++.|+..+..-. ....+++.+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-------~~~~~i~~~d~l~~~~ 103 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-------LLEINVINFNSLSYVL 103 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-------CCCceeeecccccccc
Confidence 356899999999999988876543 2689999999999999998764221 123566766655431
Q ss_pred ---ccCCCcccEEEEcC
Q 038076 211 ---EDASGRYAGIVVDL 224 (345)
Q Consensus 211 ---~~~~~~yD~Ii~D~ 224 (345)
....++||+||...
T Consensus 104 ~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 104 LNIESYLDLFDIVITNP 120 (524)
T ss_pred cccccccCcccEEEeCC
Confidence 11236899999865
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=67.79 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=68.8
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-...+++|+|.|.+++.++.++|. |.++|.|..-+..++.+++ + .++-+.||+.+- -.+-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~----------gV~~v~gdmfq~----~P~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P----------GVEHVAGDMFQD----TPKGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C----------Ccceeccccccc----CCCcCeE
Confidence 367899999999999999998885 7777777776666666664 3 277888998774 3445699
Q ss_pred EEcCCCCCCCCCCcc---hHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLE---EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~---t~ef~~~~~~~L~pgGvlvv 255 (345)
++-- +.-++. -.+|+++|++.|+|||.+++
T Consensus 241 ~mkW-----iLhdwtDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 241 WMKW-----ILHDWTDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EEEe-----ecccCChHHHHHHHHHHHHhCCCCCEEEE
Confidence 8732 112222 25789999999999998776
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00026 Score=67.72 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-CCCCCCCCCCCCcEEEEEcccccc-----cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-LSDLEKPTATGGVLQVHIGDVFSP-----SE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-~~~~~~~~~~~~rv~v~~gDa~~~-----l~ 211 (345)
.+...+++|||| ||-+.++-.. ....+.++||.+.-++-|++... +....+ ..-=.+.++.+|-..- ++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~--~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFK--KFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhh--cccceeEEEEeccchhHHHHhcc
Confidence 456789999999 5555555433 35789999999999999986542 110000 0011356777776542 12
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
..+.+||+|-|-..-+-..-..-..+-++.++.++|+|||+++-.+...+
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 23455999976432221111122334578999999999999987776544
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00055 Score=61.97 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCCC-EEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc---CCCCCCCCCCCCCcEEEEEccc-ccccc--
Q 038076 139 VPNGP-IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF---GLSDLEKPTATGGVLQVHIGDV-FSPSE-- 211 (345)
Q Consensus 139 ~~p~~-VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f---~~~~~~~~~~~~~rv~v~~gDa-~~~l~-- 211 (345)
.+..+ ||+||+|+|-.+.++.+.+|+.+-.--|+|+....--+.|. +++.. .+-+.+-..+. ..+..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv------~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV------RPPLALDVSAPPWPWELPA 96 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc------CCCeEeecCCCCCcccccc
Confidence 34454 99999999999999999999999999999999965444433 33321 12233322222 22211
Q ss_pred -cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 212 -DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 212 -~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
...+.||+|++--. -++.+.-.+..+|+.+.+.|++||.+++.
T Consensus 97 ~~~~~~~D~i~~~N~--lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 97 PLSPESFDAIFCINM--LHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccCCCCcceeeehhH--HHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 13578999997211 12333345678999999999999999863
|
The function of this family is unknown. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00087 Score=61.91 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=58.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEE-EEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQ-VHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~-v~~gDa~~~l~~~~~~y 217 (345)
+.+.+|++|||+|.++..+++. +..+|++||+++.++.. .++ ++++. +-..|.+ ++...+-..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~-------------~~~v~~~~~~ni~-~~~~~~~~~ 139 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQ-------------DERVKVLERTNIR-YVTPADIFP 139 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhc-------------CCCeeEeecCCcc-cCCHhHcCC
Confidence 5678999999999999999975 55799999999977764 222 34443 2233444 221111112
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++.+|+--. + . .-.+..+.+.|+| |.++.-+
T Consensus 140 d~~~~Dvsfi-S-----~-~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFI-S-----L-ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEe-e-----h-HhHHHHHHHHhCc-CeEEEEc
Confidence 4444443110 0 0 1257788999999 8766544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.002 Score=61.18 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~ 214 (345)
..|-+|++|.||.|.-....+...|. .+|...|.+|.-++..++...-..+ ..-+++..+|+.+. ++...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCCHhHhhccC
Confidence 46789999999999887777777776 8999999999999998877643332 34469999999986 44456
Q ss_pred CcccEEEEcC-CCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 215 GRYAGIVVDL-FSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 215 ~~yD~Ii~D~-f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.+.+++++.. |. .+++.-.-.+.+.-+.+.+.|||.++..-
T Consensus 208 p~P~l~iVsGL~E--lF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYE--LFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchh--hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 7789988732 21 12222223456788999999999998654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00053 Score=58.63 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=68.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.+++++||||.|.+.... ..+....|.++||||+.+++++++..--+ -++.+...|..+. ......||
T Consensus 47 iEgkkl~DLgcgcGmLs~a~-sm~~~e~vlGfDIdpeALEIf~rNaeEfE--------vqidlLqcdildl-e~~~g~fD 116 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF-SMPKNESVLGFDIDPEALEIFTRNAEEFE--------VQIDLLQCDILDL-ELKGGIFD 116 (185)
T ss_pred ccCcchhhhcCchhhhHHHh-hcCCCceEEeeecCHHHHHHHhhchHHhh--------hhhheeeeeccch-hccCCeEe
Confidence 36899999999999998443 34556899999999999999998764222 2346666666553 23468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLM 248 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~ 248 (345)
..++|..-+... . -.+.+|.+...+.-+
T Consensus 117 taviNppFGTk~-~-~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 117 TAVINPPFGTKK-K-GADMEFVSAALKVAS 144 (185)
T ss_pred eEEecCCCCccc-c-cccHHHHHHHHHHHH
Confidence 999986554221 1 245677776665544
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.003 Score=57.20 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc------c
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS------E 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l------~ 211 (345)
.+...|++||+-.|+..+.+.+... ..+|.+|||+|. .+ .+++..+.+|.+.-- .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~-------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KP-------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------cc-------CCCceEEeeeccCccHHHHHHH
Confidence 4568999999999999998887644 467999999873 11 356889999887631 0
Q ss_pred c-CCCcccEEEEcCCCCCC---CCCCcc----hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 212 D-ASGRYAGIVVDLFSEGK---VLPQLE----EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 212 ~-~~~~yD~Ii~D~f~~~~---~p~~l~----t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
. ...+.|+|++|.....+ ...+.. ..-.++.+.+.|+|||.+++-+..... ..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~-------------------~~ 166 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED-------------------FE 166 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC-------------------HH
Confidence 1 24557999999755321 112222 223455677789999999988775553 56
Q ss_pred HHHHHHHHHCCCCEEEEEe
Q 038076 284 SAIRALSEAFPGKVSWKRM 302 (345)
Q Consensus 284 ~~~~~l~~~F~~~v~~~~~ 302 (345)
..+..+++.|. .|...+-
T Consensus 167 ~~l~~~~~~F~-~v~~~KP 184 (205)
T COG0293 167 DLLKALRRLFR-KVKIFKP 184 (205)
T ss_pred HHHHHHHHhhc-eeEEecC
Confidence 78889999999 6765443
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00047 Score=62.21 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCCCEEEEeeccc----HHHHHHHHhC----C-CCEEEEEECCHHHHHHHHH------------------hc-CCCCCCC
Q 038076 140 PNGPIAIYGLGGG----TAAHLMLDLW----P-SLKLEGWEIDEILIDKVRD------------------YF-GLSDLEK 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G----~~~~~l~~~~----p-~~~v~~VEidp~vi~~A~~------------------~f-~~~~~~~ 191 (345)
++-+|...||++| +++..+.+.. + ..+|.+.|||+.+++.|++ || ...+...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 5666655521 2 3799999999999999874 33 1110000
Q ss_pred --CCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 192 --PTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 192 --~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...-..++++...|..+ .....++||+|+|----- +. ..-...+.++.+.+.|+|||.|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlI-YF-~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLI-YF-DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGG-GS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEE-Ee-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 00113467777777777 223568999999831000 11 112446789999999999999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00034 Score=66.66 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..+||++.+|.|+=+.++..... ...|+++|+++.-++..+++..--+ ..++.+...|++.+... ....|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-------~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-------VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--------SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-------CceEEEEeecccccccccccccc
Confidence 557899999999988888887755 5899999999999998877663221 34688888999997543 34469
Q ss_pred cEEEEcCCCCCC-----CCCC-------------cchHHHHHHHHhcc----CCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-----VLPQ-------------LEEVATWLKLKDRL----MPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-----~p~~-------------l~t~ef~~~~~~~L----~pgGvlvvn~~~~~~ 262 (345)
|.|++|+...+. -|.- -...+.++.+.+.+ +|||.++...-+...
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 999999977643 1110 12567788999999 999999987665554
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0043 Score=55.29 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccc-----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSE----- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~----- 211 (345)
.+..+||++|+..|+......+. .|...|.+|||- ++.-+ +.++++.+ |..+-..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~---------~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP---------EGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC---------CCcccccccccCCHHHHHHHH
Confidence 45678999999999999877766 488999999983 23211 23555555 4443211
Q ss_pred --cCCCcccEEEEcCCCCCC---CCCCcchHHH----HHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 212 --DASGRYAGIVVDLFSEGK---VLPQLEEVAT----WLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 212 --~~~~~yD~Ii~D~f~~~~---~p~~l~t~ef----~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
-++.+.|+|+.|.....+ +-.|....|. +.-....+.|+|.+++-+|..+. .
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e-------------------~ 190 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE-------------------E 190 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc-------------------h
Confidence 156889999999755322 2344333332 23344568899999999998775 2
Q ss_pred HHHHHHHHHHCCCCEE
Q 038076 283 NSAIRALSEAFPGKVS 298 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~ 298 (345)
..+.+.|+++|. .|.
T Consensus 191 ~~l~r~l~~~f~-~Vk 205 (232)
T KOG4589|consen 191 ALLQRRLQAVFT-NVK 205 (232)
T ss_pred HHHHHHHHHHhh-hcE
Confidence 355667888888 555
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.007 Score=48.26 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred EEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCC-CcccEE
Q 038076 144 IAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDAS-GRYAGI 220 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~-~~yD~I 220 (345)
++++|||.|... .+....+. ..++++|+++.+++.++....... ...+.+..+|... .+.... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-------LGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-------CCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999876 43433333 488889999999998655442111 1116788888776 233333 589999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
......... . ....+..+.+.|+|+|.+++.......
T Consensus 124 -~~~~~~~~~-~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 124 -ISLLVLHLL-P---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred -eeeeehhcC-C---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 422111111 1 477899999999999999887766543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.013 Score=52.82 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=89.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+..+||=||..+|+...++....+...|.+||-+|.+.+---. +.. +.+++--+.+||+.--+. --+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~---~a~------~R~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD---VAE------KRPNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH---HHH------hCCCceeeecccCCcHHhhhhccc
Confidence 46789999999999999999988788899999999987653221 111 246788899999874221 2467
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCc--EEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNG--RFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG--vlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
.|+|+.|+-.++ .+.=+..++..-|+++| ++++-.-+.+.. .|-...++..+..|.+.+
T Consensus 146 VDviy~DVAQp~------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT------------~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 146 VDVIYQDVAQPN------QAEILADNAEFFLKKGGYVVIAIKARSIDVT------------ADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccEEEEecCCch------HHHHHHHHHHHhcccCCeEEEEEEeeccccc------------CCHHHHHHHHHHHHHhcC
Confidence 999999985542 33446677888899999 455544444431 122356777777777664
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=60.81 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCC-CCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTA-TGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~-~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+||++=+|.|..+..+... +++|+.||-+|.+..+.++.+.-. ....... -..|++++++|+.+||+.....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999998875 677999999999999988766421 0000000 12579999999999998877789999
Q ss_pred EEcCCC
Q 038076 221 VVDLFS 226 (345)
Q Consensus 221 i~D~f~ 226 (345)
++|..-
T Consensus 169 YlDPMf 174 (250)
T PRK10742 169 YLDPMF 174 (250)
T ss_pred EECCCC
Confidence 999643
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=64.23 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--------- 212 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--------- 212 (345)
.++|++-||.|+++..+.+. ..+|++||+++..++.|+++..... -.+++++.+|+-++...
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-------i~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-------IDNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT---------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-------CCcceEEEeeccchhHHHHhhHHHHh
Confidence 47999999999999998864 4699999999999999999987654 35799999887665321
Q ss_pred ------CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 213 ------ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 213 ------~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
...++|+|++|.+-.+ ...++.+.+.+
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G------~~~~~~~~~~~ 301 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAG------LDEKVIELIKK 301 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-------SCHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEcCCCCC------chHHHHHHHhc
Confidence 1236899999975543 23456665543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=65.80 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=77.4
Q ss_pred CCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+-++|+-=+|+|.=+...... ....+|++-|+||+.+++.+++..+.+.. +.++++.++||...+....++||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----DERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----GCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----CceEEEehhhHHHHhhhccccCCE
Confidence 447888778888766554544 34489999999999999999998766532 238999999999998767899999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|=+|.|... ..|++.+.+.++.||++.+...
T Consensus 125 IDlDPfGSp--------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 125 IDLDPFGSP--------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEE--SS----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEeCCCCCc--------cHhHHHHHHHhhcCCEEEEecc
Confidence 999998853 4699999999999999998754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=59.38 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCEEEEeeccc----HHHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhcCC-CCC-CCC----------CCCCC--
Q 038076 141 NGPIAIYGLGGG----TAAHLMLDLWP-----SLKLEGWEIDEILIDKVRDYFGL-SDL-EKP----------TATGG-- 197 (345)
Q Consensus 141 p~~VLiIG~G~G----~~~~~l~~~~p-----~~~v~~VEidp~vi~~A~~~f~~-~~~-~~~----------~~~~~-- 197 (345)
+-+|...||++| +++..+.+..| ..+|++.|||..+++.|+.-..- ... .+. ...++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 568999999999 68888887765 48999999999999998753311 000 000 00011
Q ss_pred --------cEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 198 --------VLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 198 --------rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|++...|..+--. ..+.||+|+|= +-- + -..-...+.+......|+|||.|.+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLI--Y-Fd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLI--Y-FDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEE--e-eCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 12222222211100 24679999982 100 1 1223567889999999999999974
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=61.04 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~ 185 (345)
.|++|||+|+|.|+....+...++. .++++||.++.+++++++-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 6889999999999998888887774 789999999999999998764
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0035 Score=61.01 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=73.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..++++||+++|..+..+.++ +.+|++||..|.--.+ . .+++++.+.+|+..|... .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L-------~-------~~~~V~h~~~d~fr~~p~-~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSL-------M-------DTGQVEHLRADGFKFRPP-RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhh-------h-------CCCCEEEEeccCcccCCC-CCCCC
Confidence 45678999999999999999975 5699999966522111 1 278999999999999643 67899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCC--cEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN--GRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg--Gvlvvn~~~~~~ 262 (345)
++++|.-.. | ....+.+.+.|..| .-.++|+--+..
T Consensus 273 wvVcDmve~---P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 273 WLVCDMVEK---P-----ARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred EEEEecccC---H-----HHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 999998543 2 24566677777665 457778765544
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=58.05 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--------------------------------C-------EEEEEECCHHHHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--------------------------------L-------KLEGWEIDEILIDK 179 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--------------------------------~-------~v~~VEidp~vi~~ 179 (345)
.+...+++==||+|+++.+.+-..++ . .+.++|||+.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 34468899999999999987755432 1 37799999999999
Q ss_pred HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCC-----cchHHHHHHHHhccCCCcEEE
Q 038076 180 VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ-----LEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 180 A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~-----l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+.+....+ -...+++..+|+..+-. ..+.+|+||++.+-+.-+..+ || .+|-+.+++.++--+.++
T Consensus 270 Ak~NA~~AG------v~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAG------VGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcC------CCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEE
Confidence 998875443 25679999999998632 227999999987665433333 33 356667777777777776
Q ss_pred EE
Q 038076 255 VN 256 (345)
Q Consensus 255 vn 256 (345)
+.
T Consensus 342 ~t 343 (381)
T COG0116 342 FT 343 (381)
T ss_pred EE
Confidence 54
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=54.28 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=46.1
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.++++|+|.|..+..+.+..|..+++++|.+|.+.+.+++.+.... -++++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-------~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-------LPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-------CCcEEEEEeee
Confidence 3799999999999999988888899999999999999999875432 13466665543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0015 Score=66.26 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred CCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..|+++|+|-|-+....++. ....++.+||-+|..+-.-+.. .... -+.+|+++.+|.|+|-+ +.++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~------W~~~Vtii~~DMR~w~a-p~eq~ 440 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC------WDNRVTIISSDMRKWNA-PREQA 440 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh------hcCeeEEEeccccccCC-chhhc
Confidence 45788999999888776653 3458999999999988765442 1122 26899999999999952 24899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|+..+-.. +-..-.+.|.+.-+.+.|+|+|+-+
T Consensus 441 DI~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 441 DIIVSELLGS--FGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cchHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEc
Confidence 9998765332 2233357899999999999999875
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0057 Score=57.62 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCEEEEeec--ccHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---ccc--
Q 038076 141 NGPIAIYGLG--GGTAAHLML-DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SED-- 212 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~-- 212 (345)
-+..|+||+| +-...+++. +..|+.+|..||.||.++..++..+.-.+ +.+..++.+|.++- |..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------RGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------TSEEEEEE--TT-HHHHHCSHH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------CccEEEEeCCCCCHHHHhcCHH
Confidence 3679999999 223445554 34799999999999999999999875321 23599999999873 221
Q ss_pred ------CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 ------ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 ------~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..+..-++++.+.. .++..-.-.+.++.+++.|.||..|++.-...+.
T Consensus 142 ~~~~lD~~rPVavll~~vLh--~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLH--FVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp HHCC--TTS--EEEECT-GG--GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred HHhcCCCCCCeeeeeeeeec--cCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 23444456554422 2233334468999999999999999998776654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0036 Score=61.12 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=85.8
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+|++-=+|+|.=+...+..-+..+++.-||+|..+++.+++..++. .....++.+|+-.++......||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-------~~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-------GEDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-------cccceeecchHHHHHHhcCCCccEE
Confidence 678999888999776655555565699999999999999999987652 3445666699999998878999999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
=+|.|... ..|++.+.+..+.||++.+......
T Consensus 126 DiDPFGSP--------aPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 126 DIDPFGSP--------APFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred ecCCCCCC--------chHHHHHHHHhhcCCEEEEEecccc
Confidence 99998853 2488888899999999998765543
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=53.97 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=59.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
..++||+||=..-+.....+. .+..+|+++|||+.+++.-++...-- +-.++.++.|.|.-|.. -.++||
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~--------gl~i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEE--------GLPIEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHH--------T--EEEE---TTS---TTTSS-BS
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHc--------CCceEEEEecccccCCHHHhcCCC
Confidence 578999999776644433333 34589999999999999877654311 22499999999998865 468999
Q ss_pred EEEEcCCCCCCCCCCcch-HHHHHHHHhccCCCc-EEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEE-VATWLKLKDRLMPNG-RFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t-~ef~~~~~~~L~pgG-vlvvn~~~~~ 261 (345)
+++.|..- .... .-|+....+.|+..| ...+.+...+
T Consensus 115 ~f~TDPPy------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 115 VFFTDPPY------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEEE---S------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEEeCCCC------CHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 99998422 1111 236777888898877 5555555544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.006 Score=58.69 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=63.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----~~ 214 (345)
.+...+++.=+|.|..+..+++..|+.+|.++|.||.+++.|++.+. + ...|+++++++..++.+. ..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~--~------~~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS--D------FEGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh--h------cCCcEEEEeCCHHHHHHHHHhcCC
Confidence 34567888889999999999988777999999999999999998763 1 146899999998886432 23
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
.++|.|+.|+
T Consensus 91 ~~vDgIl~DL 100 (305)
T TIGR00006 91 TKIDGILVDL 100 (305)
T ss_pred CcccEEEEec
Confidence 5799999987
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0033 Score=57.75 Aligned_cols=107 Identities=18% Similarity=0.068 Sum_probs=80.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-+.+++||||-|.+.+.+... .-.+++.+|.+-.|++-+++.-. + .-.+...++|- ++|.-.+.++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p--------~i~~~~~v~DE-E~Ldf~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-P--------SIETSYFVGDE-EFLDFKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-C--------ceEEEEEecch-hcccccccchhhh
Confidence 467999999999999999875 35799999999999999987432 2 12345566664 4456678899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+..+..++. ++| ...+.+|+..|||+|.++-.+.+.+.
T Consensus 142 isSlslHW~--NdL--Pg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 142 ISSLSLHWT--NDL--PGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhhhhhhhh--ccC--chHHHHHHHhcCCCccchhHHhcccc
Confidence 976544432 112 35688999999999999988776665
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=54.90 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=80.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCC------------C---------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLE------------K--------------- 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~------------~--------------- 191 (345)
.+.+||+=|+|-|.++.++.+. +..+.+.|.+--|+=..+--+.. ...+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999986 78999999999987543322221 0000 0
Q ss_pred -----CCCCCCcEEEEEcccccccccC--CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 192 -----PTATGGVLQVHIGDVFSPSEDA--SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 192 -----~~~~~~rv~v~~gDa~~~l~~~--~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
......++.+..||..++-... .++||+|+.--|-. ..+ --.++++.+.+.|||||+. +|++.--.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~---Ni~~Yi~tI~~lLkpgG~W-IN~GPLly 206 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAE---NIIEYIETIEHLLKPGGYW-INFGPLLY 206 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chH---HHHHHHHHHHHHhccCCEE-EecCCccc
Confidence 0123568999999999975543 57999998653332 211 1257899999999999965 58775444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=55.69 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE--EEccccc---cc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV--HIGDVFS---PS 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v--~~gDa~~---~l 210 (345)
+...++++|||.|.=++.|++.. ...+...|||+.+.++.+.+.+.... -|.+++ +.+|-.+ ++
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-------~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-------FSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-------CCCeEEEEEEecHHHHHhhc
Confidence 45579999999999888777653 24789999999999999988775221 356666 6776544 44
Q ss_pred cc--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEecC
Q 038076 211 ED--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNCGG 259 (345)
Q Consensus 211 ~~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~~~ 259 (345)
.. ......+|+.=..+-+.. .+-....|++.+++ .|+|||.+++-+-.
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred ccccccCCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 32 123456766533222222 22345679999999 99999999886643
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0042 Score=58.00 Aligned_cols=113 Identities=16% Similarity=0.028 Sum_probs=79.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCC------------CEEEEEECCHHHHHHHHHhcCCCCC-------------C-----
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPS------------LKLEGWEIDEILIDKVRDYFGLSDL-------------E----- 190 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~------------~~v~~VEidp~vi~~A~~~f~~~~~-------------~----- 190 (345)
.-.|+++|.|+|.....+.+.++. ..++.+|.+|....-.+..--.+++ .
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 346888999999877766654332 4678899887544322211000110 0
Q ss_pred CCCC-CCCcEEEEEcccccccccCCC---cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 191 KPTA-TGGVLQVHIGDVFSPSEDASG---RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 191 ~~~~-~~~rv~v~~gDa~~~l~~~~~---~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.... ..-.+++++||+++.+...++ ++|+.++|.|++..-| .+++.|++..++++..|||.++
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~ 205 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLA 205 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCcee
Confidence 0011 245688999999999877666 8999999999975444 8899999999999999999995
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=52.42 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCH----HHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDE----ILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp----~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~- 212 (345)
.+..+||-||.+.|+...++... -|+.-|.+||-++ +++.+|++ .+++--|++||+.--+.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------------RtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------------RTNIIPIIEDARHPAKYR 221 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------------cCCceeeeccCCCchhee
Confidence 46689999999999998888775 4678999999986 45555555 45678899999974222
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-.-.|+||.|+..+. .++-..-++.--|+++|-+++.+-....
T Consensus 222 mlVgmVDvIFaDvaqpd------q~RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPD------QARIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred eeeeeEEEEeccCCCch------hhhhhhhhhhhhhccCCeEEEEEecccc
Confidence 2347799998875432 2233334556679999999887655443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.014 Score=53.09 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=57.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH----------hcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD----------YFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~----------~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
+.+....++||+|.|....+..-..+-.+..+||+.|...+.|++ .++. ...+++++.+|..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~--------~~~~v~l~~gdfl 111 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK--------RPGKVELIHGDFL 111 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----------EEEEECS-TT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc--------ccccceeeccCcc
Confidence 345667899999999988777655555669999999999988864 2222 2467899999866
Q ss_pred cc--cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 208 SP--SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 208 ~~--l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+. ....-..-|+|+++.+. ..+ ...+.+......|++|-.++
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~---F~~--~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC---FDP--DLNLALAELLLELKPGARII 155 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT---T-H--HHHHHHHHHHTTS-TT-EEE
T ss_pred ccHhHhhhhcCCCEEEEeccc---cCH--HHHHHHHHHHhcCCCCCEEE
Confidence 42 11112457999985432 011 11223444556677776655
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=55.64 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCCEEEEeecccHH-HHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEEccccc----ccccCC
Q 038076 141 NGPIAIYGLGGGTA-AHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHIGDVFS----PSEDAS 214 (345)
Q Consensus 141 p~~VLiIG~G~G~~-~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~gDa~~----~l~~~~ 214 (345)
.-++|+||+|+..+ +....+.+ +.++++.|||+..++.|++..... .+ ..+++++...-.. -+....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L------~~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL------ESRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-------TTTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc------ccceEEEEcCCccccchhhhccc
Confidence 34789999997754 43333443 799999999999999999987544 32 5788888663322 233346
Q ss_pred CcccEEEEc
Q 038076 215 GRYAGIVVD 223 (345)
Q Consensus 215 ~~yD~Ii~D 223 (345)
+.||+.+|.
T Consensus 176 e~~dftmCN 184 (299)
T PF05971_consen 176 ERFDFTMCN 184 (299)
T ss_dssp S-EEEEEE-
T ss_pred ceeeEEecC
Confidence 799999994
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.029 Score=47.86 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=60.2
Q ss_pred EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC-cccEEEEcC-CCCCC----CCCCcchHHH
Q 038076 166 KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-RYAGIVVDL-FSEGK----VLPQLEEVAT 239 (345)
Q Consensus 166 ~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-~yD~Ii~D~-f~~~~----~p~~l~t~ef 239 (345)
+|.+.||.++.++.+++.+.-... ..|++++++.=.+..+..++ +.|+++-.+ |-+++ ....-.|.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~------~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL------EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-------GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC------CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999998853321 34899998765554333444 899998764 22221 1122467889
Q ss_pred HHHHHhccCCCcEEEEEecCCCC
Q 038076 240 WLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 240 ~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++.+.++|+|||++++-+.....
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHhhccCCEEEEEEeCCCC
Confidence 99999999999999988876665
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0099 Score=53.41 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=73.4
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.|.....++||++|.|+|..+....+. ....|...|++|..+...+-+-... +-.+.+.+.|..- .+
T Consensus 74 ~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an--------gv~i~~~~~d~~g----~~ 140 (218)
T COG3897 74 HPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN--------GVSILFTHADLIG----SP 140 (218)
T ss_pred CccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc--------cceeEEeeccccC----CC
Confidence 344456799999999999988876653 5689999999999888776655432 3467778777654 57
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+. |+|-... .....+. ++++|...|..++
T Consensus 141 ~~~Dl~LagDlfy~~~-----~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 141 PAFDLLLAGDLFYNHT-----EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cceeEEEeeceecCch-----HHHHHHH-HHHHHHhCCCEEE
Confidence 89999986 6655322 1122333 7888999998766
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=61.20 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=69.5
Q ss_pred CEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhc-CCCCCCC-CCCCCCcEEEEEcccccccccC---
Q 038076 143 PIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYF-GLSDLEK-PTATGGVLQVHIGDVFSPSEDA--- 213 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f-~~~~~~~-~~~~~~rv~v~~gDa~~~l~~~--- 213 (345)
.|+++|+|=|-+....++.. -..+|.+||-||..+...+... ....+.+ ....+.+|+++..|+|+|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 48999999998877666532 2479999999966333333222 1122211 1223678999999999983211
Q ss_pred -------CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC----CcE
Q 038076 214 -------SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP----NGR 252 (345)
Q Consensus 214 -------~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p----gGv 252 (345)
-++.|+||..+-.. +-..-.+.|.+.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 13799999755221 11223567888888888887 887
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.02 Score=52.37 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=81.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++.+|||--+.++.++.+..+...++++|+++.-++.|.+++.-..+ .+++++..+|+..-++ .+...|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l------~~~i~vr~~dgl~~l~-~~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL------SERIDVRLGDGLAVLE-LEDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC------cceEEEeccCCccccC-ccCCcCE
Confidence 34569999999999999999998999999999999999999999975543 6899999999987764 4668999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++-.-.+ ..-.+++++-++.|+--=.++
T Consensus 89 ivIAGMGG------~lI~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 89 IVIAGMGG------TLIREILEEGKEKLKGVERLI 117 (226)
T ss_pred EEEeCCcH------HHHHHHHHHhhhhhcCcceEE
Confidence 98843222 233578888888887543444
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0091 Score=54.54 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=52.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---cCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---DASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~~~~~ 216 (345)
.+..|++--||+|..+.+...++ ..|.++||||.=+..|+.+...-+. ..|+++++||..+... .....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI------~~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV------PDRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC------CceeEEEechHHHHHHHHhhhhhe
Confidence 45667775555444444444333 4799999999999999998865432 3499999999877543 34556
Q ss_pred ccEEEEc
Q 038076 217 YAGIVVD 223 (345)
Q Consensus 217 yD~Ii~D 223 (345)
||+++.-
T Consensus 166 ~~~vf~s 172 (263)
T KOG2730|consen 166 YDCVFLS 172 (263)
T ss_pred eeeeecC
Confidence 7888763
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.025 Score=54.04 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=62.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----~ 213 (345)
.+..-.++.=.|+|..++.+++.+|. .+++++|-||..++.|++.+.- .++|++++++...++-.. .
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~--------~~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE--------FDGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc--------cCCcEEEEeCcHHHHHHHHHhcC
Confidence 34567778888999999999998875 5699999999999999998742 257999999987665332 2
Q ss_pred CCcccEEEEcC
Q 038076 214 SGRYAGIVVDL 224 (345)
Q Consensus 214 ~~~yD~Ii~D~ 224 (345)
.+++|.|+.|+
T Consensus 94 i~~vDGiL~DL 104 (314)
T COG0275 94 IGKVDGILLDL 104 (314)
T ss_pred CCceeEEEEec
Confidence 46899999987
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.042 Score=52.34 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|+++|+| ||++++.+.+......|++.|.+..-.+.+.+ ++... ... + +.........|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d--------~~~-----~--~~~~~~~~~aD 66 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVID--------ELT-----V--AGLAEAAAEAD 66 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCccc--------ccc-----c--chhhhhcccCC
Confidence 3579999999 89999999987666778889988888887654 33321 000 0 11112346689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~ 295 (345)
+||+-+ |. -.+.++++++...|++|-+++ .+.+.. ...++++++..++
T Consensus 67 ~Vivav------Pi-~~~~~~l~~l~~~l~~g~iv~-Dv~S~K---------------------~~v~~a~~~~~~~ 114 (279)
T COG0287 67 LVIVAV------PI-EATEEVLKELAPHLKKGAIVT-DVGSVK---------------------SSVVEAMEKYLPG 114 (279)
T ss_pred EEEEec------cH-HHHHHHHHHhcccCCCCCEEE-eccccc---------------------HHHHHHHHHhccC
Confidence 999843 22 256788998888888877663 544333 3677778888865
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.021 Score=55.01 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=56.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---c--C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---D--A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~--~ 213 (345)
.+....++.=+|+|..+..+++..|+.++.++|.||++++.|++.+.- .++|+++++++..++-. . .
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~--------~~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK--------FDDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC--------CCTTEEEEES-GGGHHHHHHHTTT
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh--------ccceEEEEeccHHHHHHHHHHccC
Confidence 345667888889999999999988889999999999999999987752 26799999998777532 1 2
Q ss_pred CCcccEEEEcC
Q 038076 214 SGRYAGIVVDL 224 (345)
Q Consensus 214 ~~~yD~Ii~D~ 224 (345)
..++|.|+.|+
T Consensus 91 ~~~~dgiL~DL 101 (310)
T PF01795_consen 91 INKVDGILFDL 101 (310)
T ss_dssp TS-EEEEEEE-
T ss_pred CCccCEEEEcc
Confidence 46899999997
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=51.88 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=70.8
Q ss_pred EEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEc
Q 038076 144 IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVD 223 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D 223 (345)
|.+|||--|.++.+|.+.....++.++||++.-++.|++......+ ..+++++.+||.+-+.. .+..|.|++-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l------~~~i~~rlgdGL~~l~~-~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL------EDRIEVRLGDGLEVLKP-GEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-------TTTEEEEE-SGGGG--G-GG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------cccEEEEECCcccccCC-CCCCCEEEEe
Confidence 6899999999999999976667999999999999999987753332 46899999999998753 3447999874
Q ss_pred CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.-.+ ....++++.....++..-.+++.-.
T Consensus 74 GMGG------~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 74 GMGG------ELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp EE-H------HHHHHHHHHTGGGGTT--EEEEEES
T ss_pred cCCH------HHHHHHHHhhHHHhccCCeEEEeCC
Confidence 3221 2456778877777776667776433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.014 Score=49.61 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.++.+|+++|+|-|.+++.+... .++.+|++||.++..++.+.++-.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 45788999999999999999872 267999999999999999887653
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0075 Score=60.83 Aligned_cols=106 Identities=10% Similarity=0.083 Sum_probs=83.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---CC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---SG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~~ 215 (345)
++-+||+-=+++|.-+....+..|+ .+|++-|.|+..++..+++-.+.. .+..+..+++|+...+-.. .+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~------v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG------VEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC------chhhcccccchHHHHHHhcccccc
Confidence 4567888767778666655555565 799999999999998888776553 2567999999999876543 48
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|=+|.|... ..|++.+-+.++.||++.+.+..
T Consensus 183 ~FDvIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ccceEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEecc
Confidence 9999999988853 36899999999999999987654
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.013 Score=54.56 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+|++||||-.-++.-.....|+..+.+.|||..+++....++..- +++.++.+.|...- ..+...|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l--------~~~~~~~v~Dl~~~--~~~~~~D 173 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL--------GVPHDARVRDLLSD--PPKEPAD 173 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT--------T-CEEEEEE-TTTS--HTTSEES
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh--------CCCcceeEeeeecc--CCCCCcc
Confidence 4589999999999988887666667899999999999999999988643 46788888887653 2567899
Q ss_pred EEEE
Q 038076 219 GIVV 222 (345)
Q Consensus 219 ~Ii~ 222 (345)
+.++
T Consensus 174 laLl 177 (251)
T PF07091_consen 174 LALL 177 (251)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 9986
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.028 Score=55.03 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=69.1
Q ss_pred CCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccC-CCcc
Q 038076 141 NGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDA-SGRY 217 (345)
Q Consensus 141 p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~-~~~y 217 (345)
..+|+++|+| -|.++..+++..+..+|.++|++++-+++|+++++..... ++.-+ |...-+ +.+ ...+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----~~~~~----~~~~~~~~~t~g~g~ 239 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----NPSED----DAGAEILELTGGRGA 239 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----cCccc----cHHHHHHHHhCCCCC
Confidence 3479999999 6777778888888899999999999999999988643110 11111 222212 112 3479
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|--.- +...++.+.+.++++|.+++.-.
T Consensus 240 D~vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 240 DVVIEAVG----------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CEEEECCC----------CHHHHHHHHHHhcCCCEEEEEec
Confidence 99985321 24588999999999999876543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.043 Score=49.88 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=51.6
Q ss_pred CCCCCEEEEeecccHHHHHHH---HhC-CCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccc----
Q 038076 139 VPNGPIAIYGLGGGTAAHLML---DLW-PSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---- 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~---~~~-p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---- 209 (345)
.+|..|+++|.--|..+.+.+ +.. +..+|.+||||..-.. .+.+.-.+ .+|+++++||..+-
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~---------~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM---------SPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------------TTEEEEES-SSSTHHHH
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc---------cCceEEEECCCCCHHHHH
Confidence 478999999975444444333 344 6789999999754332 22222111 47999999998752
Q ss_pred -ccc--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 210 -SED--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 210 -l~~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++. ......+||.|..... . ....-++.....+++|+.+++
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~~---~--hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHTH---E--HVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp TSGSS----SSEEEEESS-------S--SHHHHHHHHHHT--TT-EEEE
T ss_pred HHHHhhccCCceEEEECCCccH---H--HHHHHHHHhCccCCCCCEEEE
Confidence 111 2345668888874321 1 223446668899999999886
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=50.97 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=92.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..|||++.+-.|.=+.+++... ....|.+-|-+..-++.-+..+.--. -.+..+...|+++|-+. -..+|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-------v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-------VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-------CCceEEEccCcccccccccCccc
Confidence 56899999987665555555443 34789999999988887776553111 24577889999988533 23489
Q ss_pred cEEEEcCCCCCC-C---CC--------------CcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 218 AGIVVDLFSEGK-V---LP--------------QLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 218 D~Ii~D~f~~~~-~---p~--------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
|-|++|++..+. + +. .-+.++.+..+.+.+++||+++...-+...
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~----------------- 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV----------------- 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch-----------------
Confidence 999999988652 1 11 123567788888999999999987666554
Q ss_pred HHHHHHHHHHHHHCCCCEE
Q 038076 280 WMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~v~ 298 (345)
.--..+++..-+-|| .+.
T Consensus 377 ~ENE~vV~yaL~K~p-~~k 394 (460)
T KOG1122|consen 377 EENEAVVDYALKKRP-EVK 394 (460)
T ss_pred hhhHHHHHHHHHhCC-ceE
Confidence 123456666666777 444
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.14 Score=52.16 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS---- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~---- 214 (345)
...+-++++-||+|+++..+.+ +-.+|.+||++|+-++-|++.-..++ -.+.++|.|-+.+-+....
T Consensus 382 ~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ng-------isNa~Fi~gqaE~~~~sl~~~~~ 452 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQING-------ISNATFIVGQAEDLFPSLLTPCC 452 (534)
T ss_pred CCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcC-------ccceeeeecchhhccchhcccCC
Confidence 3457799999999999999886 46799999999999999999876655 3578999996665543321
Q ss_pred Cccc-EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYA-GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD-~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
..=+ +.|+|....+ ....+++.+++.=++.=.+.+.|.
T Consensus 453 ~~~~~v~iiDPpR~G------lh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 453 DSETLVAIIDPPRKG------LHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCCceEEEECCCccc------ccHHHHHHHHhccCccceEEEEcC
Confidence 2335 5667754432 334567777766667766665554
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.33 Score=47.65 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHhhcccc----CCCCCEEEEeecccHHHHHHHHh-CC---CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 131 EFVSLPAI----VPNGPIAIYGLGGGTAAHLMLDL-WP---SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 131 ~~~~l~~~----~~p~~VLiIG~G~G~~~~~l~~~-~p---~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
+..++|.+ .+..+||++.+..|+=+..+++. ++ ...|.+-|.|+.-...-+.-...-+ .+.+.+.
T Consensus 142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-------~~~~~v~ 214 (375)
T KOG2198|consen 142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-------SPNLLVT 214 (375)
T ss_pred hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-------Ccceeee
Confidence 34456532 46789999999988777666654 22 2389999999988876655443221 4555566
Q ss_pred Ecccccccc--------cCCCcccEEEEcCCCCCC-----CC--------------CCcchHHHHHHHHhccCCCcEEEE
Q 038076 203 IGDVFSPSE--------DASGRYAGIVVDLFSEGK-----VL--------------PQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 203 ~gDa~~~l~--------~~~~~yD~Ii~D~f~~~~-----~p--------------~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..|+-.+-. .....||=|++|+...+. .+ -+......+....+.|++||.+|.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 556554421 134689999999976432 01 011234567788899999999998
Q ss_pred EecCCCC
Q 038076 256 NCGGIDG 262 (345)
Q Consensus 256 n~~~~~~ 262 (345)
..-+-.+
T Consensus 295 STCSLnp 301 (375)
T KOG2198|consen 295 STCSLNP 301 (375)
T ss_pred eccCCCc
Confidence 7665554
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.13 Score=52.94 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=62.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-CCCCCCC----cEEEEEccc----cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-KPTATGG----VLQVHIGDV----FS 208 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~~~~~~~----rv~v~~gDa----~~ 208 (345)
.++.+|+++|+| .|..+...++... .+|.++|++++..+.+++. +..... +....+. ..+-..+|. ++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 368999999999 5666666666654 5899999999999999984 422000 0000000 000000010 00
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+.-+.+|+||.-+..+....+.+. .+++.+.++|||+++.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~li----t~~~v~~mkpGgvIVd 283 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLI----TAEMVASMKPGSVIVD 283 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchH----HHHHHHhcCCCCEEEE
Confidence 011112469999975544332112222 3667788899999763
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.12 Score=50.48 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++|+++|+| -|.++.++++... .+|++++++++-.+.|++.-. . .++..---+.++...+.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-d------------~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-D------------HVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-c------------EEEEcCCchhhHHhHhhCc
Confidence 56889999976 4577777777654 999999999999999998642 1 2332111122233334599
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|+.-+. ...+....+.|+++|.+++.=
T Consensus 232 ~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 232 AIIDTVG-----------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEEECCC-----------hhhHHHHHHHHhcCCEEEEEC
Confidence 9996432 235777788999999988653
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.044 Score=49.58 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=77.9
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~ 219 (345)
-...+||||=|.+...|.-.+|+.-|.+.||.-.|.+..++....-........-+++.+....+..|+.+ ...+-+=
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 45899999999999999999999999999999999988776542111000011256788999999999876 2333333
Q ss_pred EEEcCCCCC----CCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEG----KVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~----~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.-..++. .-.....+...+....-.|++||++..
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 333222221 112335566678888889999999853
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.043 Score=50.84 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC----CCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG----LSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~----~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+||+.=+|-|.-+..+... +.+|+++|-+|.+..+.++-+. -++. ....-.|++++++|+.+||+....+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~--~~~~~~ri~l~~~d~~~~L~~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPEL--LAEAMRRIQLIHGDALEYLRQPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTT--HHHHHHHEEEEES-CCCHCCCHSS--
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHh--HHHHHhCCEEEcCCHHHHHhhcCCCC
Confidence 48999888888777666643 6799999999999887663221 1110 00012489999999999999667899
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|+|.+|.
T Consensus 153 DVVY~DP 159 (234)
T PF04445_consen 153 DVVYFDP 159 (234)
T ss_dssp SEEEE--
T ss_pred CEEEECC
Confidence 9999985
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=50.09 Aligned_cols=107 Identities=9% Similarity=0.024 Sum_probs=69.1
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
...+||++|+| .|..+...++.+...+|.++|+++.-+++|++ ||.....+ ..+-. ..++.++-++. ....
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~----~~~~~-~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDP----SSHKS-SPQELAELVEKALGKKQ 242 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEee----ccccc-cHHHHHHHHHhhccccC
Confidence 45789999999 67777777777888999999999999999999 87543110 00000 12233333322 2355
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|+.|--. . ..-.++.....++.+|.+++--++.+.
T Consensus 243 ~d~~~dCs-G---------~~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCS-G---------AEVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEcc-C---------chHHHHHHHHHhccCCEEEEeccCCCc
Confidence 88877321 1 123466677889999996665555443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.14 Score=46.72 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
...|.++|||.+.++..+. ...+|...|+-. . +++ |+..|..+. .-.++..|++
T Consensus 73 ~~viaD~GCGdA~la~~~~---~~~~V~SfDLva-------------~-------n~~--Vtacdia~v-PL~~~svDv~ 126 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP---NKHKVHSFDLVA-------------P-------NPR--VTACDIANV-PLEDESVDVA 126 (219)
T ss_dssp TS-EEEES-TT-HHHHH-----S---EEEEESS--------------S-------STT--EEES-TTS--S--TT-EEEE
T ss_pred CEEEEECCCchHHHHHhcc---cCceEEEeeccC-------------C-------CCC--EEEecCccC-cCCCCceeEE
Confidence 3579999999999996653 235788888621 1 234 666888653 3357899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+..+---++ --.+|+.++.|.|+|||.+.+-
T Consensus 127 VfcLSLMGT-----n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 127 VFCLSLMGT-----NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEhhhhCC-----CcHHHHHHHHheeccCcEEEEE
Confidence 886643221 2368999999999999998764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.47 Score=44.93 Aligned_cols=122 Identities=11% Similarity=-0.040 Sum_probs=80.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIV 221 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii 221 (345)
+++++-||.|.+...+.+. .-..+.++|+|+..++..++++.. .++.+|..++.... ...+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------------CCccCccccCchhhcCCCCCEEE
Confidence 6899999999998887764 345688899999999999988741 15678888875433 46799999
Q ss_pred EcCCCCCC--------CCCC--cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 222 VDLFSEGK--------VLPQ--LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 222 ~D~f~~~~--------~p~~--l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
.+....+. .-.. -.-.++++ +.+.++|.=+++=|+..-... ++...++.+++.|++
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~g~~~~-------------~~~~~~~~i~~~l~~ 133 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPKYFLLENVKGLLTH-------------DNGNTLKVILNTLEE 133 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCCEEEEEcCcchhcc-------------CchHHHHHHHHHHHh
Confidence 87655321 0000 01224443 444568987777788765431 011456677777765
Q ss_pred H
Q 038076 292 A 292 (345)
Q Consensus 292 ~ 292 (345)
.
T Consensus 134 ~ 134 (275)
T cd00315 134 L 134 (275)
T ss_pred C
Confidence 3
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.38 Score=44.62 Aligned_cols=100 Identities=11% Similarity=-0.047 Sum_probs=69.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
..+.+.+|+||.-+|.++..+++. ...+|.+||.--.-+.. . ...+||+.++..-=..++.. ..+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~--------k----LR~d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHW--------K----LRNDPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCH--------h----HhcCCcEEEEecCChhhCCHHHccc
Confidence 357789999999999999999974 56899999973222211 1 12488999888744444432 345
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..|+|++|+.-- .-...+-.+...|+|+|.++.=+
T Consensus 144 ~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 144 KPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 789999997331 12346777888889988876543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.24 Score=50.28 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=72.6
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+++.+|||---+...+.+ .....|+.+|+++.+++.....-. . ..+..++...|...- .-.++.||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~-~-------~~~~~~~~~~d~~~l-~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNA-K-------ERPEMQMVEMDMDQL-VFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhccc-c-------CCcceEEEEecchhc-cCCCcceeEEEe
Confidence 899999998877666554 244789999999999998776543 2 246688888888774 346899999985
Q ss_pred ----cCCCCCCCCCCc---chHHHHHHHHhccCCCcEEEEE
Q 038076 223 ----DLFSEGKVLPQL---EEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 223 ----D~f~~~~~p~~l---~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|....+. ...+ .-...+.++.+.|+++|.++.-
T Consensus 121 kGtlDal~~de-~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 121 KGTLDALFEDE-DALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred cCccccccCCc-hhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 3322221 1112 2335678899999999996543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.57 Score=44.28 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=59.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| ||+++..+.+. +.+|.++|.+++..+.+.+..... ....|. + .-+..|+|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~-------------~~~~~~-~----~~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVD-------------EASTDL-S----LLKDCDLV 61 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcc-------------cccCCH-h----HhcCCCEE
Confidence 68999999 67888888764 568999999999888776532110 011111 1 12467999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+-+.. . ...+.++.+...++++ .+++++.+..
T Consensus 62 ilavp~------~-~~~~~~~~l~~~l~~~-~ii~d~~Svk 94 (279)
T PRK07417 62 ILALPI------G-LLLPPSEQLIPALPPE-AIVTDVGSVK 94 (279)
T ss_pred EEcCCH------H-HHHHHHHHHHHhCCCC-cEEEeCcchH
Confidence 985422 1 3456788888888776 5556665443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.24 Score=47.86 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=59.0
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++|+++|+| .|..+.++++.....+|.+++.+++-.+.+++ ++.... +.....|..+.... ...+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa~~v---------i~~~~~~~~~~~~~-~g~~D 237 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGADKL---------VNPQNDDLDHYKAE-KGYFD 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCCcEE---------ecCCcccHHHHhcc-CCCCC
Confidence 46789999865 44555566665544479999999999999988 443210 00011122222222 23589
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|| |.... .+.++.+.+.|+++|.++.-
T Consensus 238 ~vi-d~~G~---------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSF-EVSGH---------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEE-ECCCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 887 33221 24577788899999998743
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.037 Score=53.93 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.|+++|++|.|.|+...++...+|+ ..++.+|.+|.+-++...--.-... +..+-|..-+..|-..+ . ..+.|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~l-p-~ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---EKTDWRASDVTEDRLSL-P-AADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---ccCCCCCCccchhccCC-C-ccceee
Confidence 5889999999999999888888997 6889999999988876542211100 01122333333342222 1 356799
Q ss_pred EEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+ |---+...+.++ ...++.+...++|||.+++--.+..
T Consensus 188 l~i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEeCCCc
Confidence 8875 211111111222 2267888889999999876544444
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.074 Score=50.58 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=44.4
Q ss_pred CCcEEEEEccccccccc-CCCcccEEEEcCCCCC--C---CCCCc-------chHHHHHHHHhccCCCcEEEEEec
Q 038076 196 GGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEG--K---VLPQL-------EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~--~---~p~~l-------~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
....+++++|..++++. .++++|+|++|.+-.. . ..... ...+++.++.+.|+|||.+++++.
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 34568999999998765 4678999999964211 0 00111 124688999999999999998644
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.14 Score=48.02 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCCCEEEEeecc--cHHH--HHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGG--GTAA--HLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~--G~~~--~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
+...||+.+|.|+ |..+ .-|++.+| +.-+.-.||++ |-. |. -..+.+|-+.+. .
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS----------Da-~~~~~~Dc~t~~--~ 118 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS----------DA-DQSIVGDCRTYM--P 118 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-----------SS-SEEEES-GGGEE--E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc----------cc-CCceeccccccC--C
Confidence 4578999999983 2222 24455576 46777788743 321 12 246788988884 5
Q ss_pred CCcccEEEEcCCCCCC-------CCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 214 SGRYAGIVVDLFSEGK-------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~-------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+.++|+||.|.|++.. ....-+..-+..-++++|+-||-+++-+...
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 7999999999996432 1112222334556789999999999887643
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.43 Score=49.05 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP----SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--- 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--- 212 (345)
+..+|.+--||+|++.....++.. ...+.+.|+++....+|+-++.+.+.+ . .+.+.++|...-...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~-----~-~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE-----G-DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC-----c-cccccccccccCCccccc
Confidence 445899999999987776665432 378999999999999999988766531 1 456777776654322
Q ss_pred -CCCcccEEEEcCCCC-C------------------C-CCCCcch-HHHHHHHHhccCCCcEEEEEecC
Q 038076 213 -ASGRYAGIVVDLFSE-G------------------K-VLPQLEE-VATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~-~------------------~-~p~~l~t-~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..++||.|+...+.. . . +++.-.. ..|++.+..+|+|||..++-+..
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 347799988754321 0 0 1111222 67899999999999965554443
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.27 Score=47.44 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++.+|.+||+| .|+.+.-++-. -+..|+..|+|.+-++.-...|+ .|++........+ +..-.++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~-----------~rv~~~~st~~~i-ee~v~~aD 233 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG-----------GRVHTLYSTPSNI-EEAVKKAD 233 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC-----------ceeEEEEcCHHHH-HHHhhhcc
Confidence 57899999988 56655555432 36899999999999988877774 4677776666654 33457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
++|.-+--++.-.+.|.++|. .+.++||++++
T Consensus 234 lvIgaVLIpgakaPkLvt~e~----vk~MkpGsViv 265 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREM----VKQMKPGSVIV 265 (371)
T ss_pred EEEEEEEecCCCCceehhHHH----HHhcCCCcEEE
Confidence 998755444443456766654 45788999876
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.39 Score=47.56 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++.+|+++|+| .|..+...++.. +.+|+++|.+++-.+.+.+.++.. +.....+. +.+.+.-+.+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~-----------v~~~~~~~-~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGR-----------IHTRYSNA-YEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCce-----------eEeccCCH-HHHHHHHccCC
Confidence 56789999987 444444545444 468999999998877666555421 11111111 11222235789
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||.-..-+....+.+.+.+.++ .++|++++ +++....
T Consensus 233 vVI~a~~~~g~~~p~lit~~~l~----~mk~g~vI-vDva~d~ 270 (370)
T TIGR00518 233 LLIGAVLIPGAKAPKLVSNSLVA----QMKPGAVI-VDVAIDQ 270 (370)
T ss_pred EEEEccccCCCCCCcCcCHHHHh----cCCCCCEE-EEEecCC
Confidence 99975432222123466666664 46777664 4655433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=1 Score=43.15 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |++++..+.+.....+|+++|.+++-.+.+++. +.. .. ...+..+. -+..|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~~-----------~~-~~~~~~~~----~~~aDv 69 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GLG-----------DR-VTTSAAEA----VKGADL 69 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CCC-----------ce-ecCCHHHH----hcCCCE
Confidence 579999998 456777766542225899999999988877653 211 01 11122122 246899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+-+.. . ...++++.+...++++.++ +++.
T Consensus 70 Viiavp~------~-~~~~v~~~l~~~l~~~~iv-~dvg 100 (307)
T PRK07502 70 VILCVPV------G-ASGAVAAEIAPHLKPGAIV-TDVG 100 (307)
T ss_pred EEECCCH------H-HHHHHHHHHHhhCCCCCEE-EeCc
Confidence 9985422 1 2356777787888888755 4553
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.1 Score=47.95 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
...-|..||-|.|.+++.++.. ...++++||+|+..+.--+-.-... +.++.+|++|+..|
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EAa--------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEAA--------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhcC--------CcceEEecccccee
Confidence 4566899999999999999974 4579999999998887544322222 46899999999876
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.12 Score=49.09 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=65.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC---CCCCCCCCC-------CCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL---SDLEKPTAT-------GGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~---~~~~~~~~~-------~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..+.+. +.+|+++|.|++.++.+.++... ......... ..+++.. .|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH-
Confidence 579999998 56676666653 57899999999999987654210 000000000 0122211 22211
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-+.-|+||.-++. .+ ...++++.+.+.++|+.++++|..+.+.
T Consensus 78 ---~~~~aD~Vi~avpe------~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~ 122 (288)
T PRK09260 78 ---AVADADLVIEAVPE------KLELKKAVFETADAHAPAECYIATNTSTMSP 122 (288)
T ss_pred ---hhcCCCEEEEeccC------CHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 23567999975543 22 2457788888899998888888876553
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.9 Score=42.30 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| ||++++.+.+.. ..+.+++.|+.-.+.++.. +..- ..-...| +...-+..|+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~-~~~~----------~~~~~~~----~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARAL-GFGV----------IDELAAD----LQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHh-cCCC----------CcccccC----HHHHhcCCCE
Confidence 468999999 788888887653 3555666666555444321 1110 0000111 1122356899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~~~~~ 261 (345)
||+-+ |+. ...+.++.+.. .++|+ .++.++.+..
T Consensus 64 Vilav------P~~-~~~~vl~~l~~~~l~~~-~ivtDv~SvK 98 (359)
T PRK06545 64 IVLAV------PVD-ATAALLAELADLELKPG-VIVTDVGSVK 98 (359)
T ss_pred EEEeC------CHH-HHHHHHHHHhhcCCCCC-cEEEeCcccc
Confidence 99844 322 35678888887 47776 5555665444
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.32 Score=45.71 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=57.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.-|.++|||-+-++.. . --.|+..|+- ..+=+|+..|.++ +.-.+++.|+++
T Consensus 182 ~vIaD~GCGEakiA~~--~---~~kV~SfDL~----------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS--E---RHKVHSFDLV----------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred eEEEecccchhhhhhc--c---ccceeeeeee----------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4578899999888751 1 2356666651 1223467789888 455789999998
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..+.--++ .-.+|+.++.+.|++||.+-+-=
T Consensus 234 ~CLSLMgt-----n~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLMGT-----NLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhhcc-----cHHHHHHHHHHHhccCceEEEEe
Confidence 76533221 22579999999999999986643
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.13 Score=45.11 Aligned_cols=106 Identities=17% Similarity=0.068 Sum_probs=64.7
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE---EcccccccccCCC
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH---IGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~---~gDa~~~l~~~~~ 215 (345)
..++||++|+| +|-.+..++.+-|...|..-|=+++-++-.++--..... ....++.+. .--++. .....
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~----s~~tsc~vlrw~~~~aqs--q~eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA----SSLTSCCVLRWLIWGAQS--QQEQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc----cccceehhhHHHHhhhHH--HHhhC
Confidence 45789999999 444444555566789999999999999877764432210 111222221 111111 12356
Q ss_pred cccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+||+|++ |. .-..-+.....+.++.+|+|.|..++-
T Consensus 103 tFDiIlaADC-----lFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 103 TFDIILAADC-----LFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred cccEEEeccc-----hhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 8999997 32 101113456788899999999995543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.55 Score=46.26 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc-ccccccc--CC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD-VFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD-a~~~l~~--~~ 214 (345)
.+..+||++|+|+ |..+..+++..+..++.+++.+++..+.++++++.. -+.....| ..+-+.. .+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~----------vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE----------TINFEEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE----------EEcCCcchHHHHHHHHHcCC
Confidence 3567899999876 777778887765457999999999999999975421 11111111 1121211 23
Q ss_pred CcccEEEEcCCCCCCC------------CCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 215 GRYAGIVVDLFSEGKV------------LPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~------------p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+.+|+|+- ...+... -++-.+...++.+.+.|+++|.++.-
T Consensus 253 ~~~D~vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 253 RGPDVCID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCEEEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 46998874 3221100 00011245678888999999998643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.74 Score=43.87 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++||++|+| -|.++.++++..+...|.++|.+++-.+.|+.+.-. ++. .+ ....+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i---------~~~-----~~-------~~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL---------DPE-----KD-------PRRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc---------Chh-----hc-------cCCCCC
Confidence 45789999865 566666777766555688889999888777653211 110 00 134689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|| |.... ...++.+.+.|+++|.+++
T Consensus 203 vvi-d~~G~---------~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 203 AIY-DASGD---------PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EEE-ECCCC---------HHHHHHHHHhhhcCcEEEE
Confidence 887 43221 2356778889999999874
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.72 Score=47.61 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-----CCCCCCCcEEEEEccccc----c
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-----KPTATGGVLQVHIGDVFS----P 209 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-----~~~~~~~rv~v~~gDa~~----~ 209 (345)
++.+|+++|+| .|..+..+++.. +..|+++|.+++..+.+++ ++..... .....+...+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 57899999998 445555555554 4679999999999999887 4422100 000000111111111110 0
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+.+.-+.+|+||.-+--++...+.+.+.+. .+.+|||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~em----v~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEM----VDSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHH----HhhCCCCCEEE
Confidence 111236799998755333333345776665 45677887754
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.92 Score=45.59 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE----EcccccccccCCC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH----IGDVFSPSEDASG 215 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~----~gDa~~~l~~~~~ 215 (345)
++|.+||+| |+.++..|.+. +.+|+++|+|++.++..++- ..+. .++.+.-. ...++.......+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g-~~~~------~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG-EIHI------VEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC-CCCc------CCCCHHHHHHHHhhcCceeeecccc
Confidence 579999999 66777777654 57899999999999864321 1111 01111100 0001100011224
Q ss_pred cccEEEEcCCCCCC--CCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGK--VLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~--~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-|+||+.+..+.. -.+.+ .-.+..+.+.+.|++|-+ +++..+.+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~i-VI~~STv~p 123 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDL-VILESTSPV 123 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCE-EEEeCCCCC
Confidence 68999987766421 11122 334456778888877555 455555443
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.24 Score=43.48 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=71.6
Q ss_pred EEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc---CCCcccE
Q 038076 145 AIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED---ASGRYAG 219 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~---~~~~yD~ 219 (345)
|.+|=|.-+.+..|.+.++ ..+|++--.|.+ -++.++|-.... +-......+++++++ ||.+.-+. ...+||.
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~-nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEE-NLEELRELGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHH-HHHHHhhcCCccccCCCCCcccccccccCCcCCE
Confidence 6789999999999998876 555555544444 222333321000 000112455666665 77764332 3588999
Q ss_pred EEEcCCCCCC--------C-CCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGK--------V-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~--------~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+-..+..+. + ...-.-..||+.+++.|+++|.+.+.+-...+
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 9986655431 0 01123367999999999999999888776654
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.5 Score=35.08 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=57.8
Q ss_pred EEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCccc
Q 038076 144 IAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRYA 218 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~yD 218 (345)
|+++|+| .+++.+.+.. .+.+++++|.|++.++.+++.. +.++.||+.+. +++ .-++.|
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------------~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------------VEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------------SEEEES-TTSHHHHHHTTGGCES
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------------cccccccchhhhHHhhcCccccC
Confidence 4667765 4444444321 3468999999999999888743 56899999874 332 347899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.|++...+. ...-......+.+.|+..+++-+..
T Consensus 65 ~vv~~~~~d-------~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 65 AVVILTDDD-------EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EEEEESSSH-------HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EEEEccCCH-------HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 998854331 1111233445667888887766653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.52 Score=44.48 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCCC-----CCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPTA-----TGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~~-----~~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..+++. +.+|+++|++++.++.+++... +.+...... .-.++++. .|. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~-~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL-D- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H-
Confidence 479999999 77787777654 5689999999999975543211 000000000 00133322 221 1
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.-+..|+||.-+ |+.+ ...++++.+.+.++|+.+++.|..+..
T Consensus 79 ---~~~~aDlVi~av------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~ 122 (282)
T PRK05808 79 ---DLKDADLVIEAA------TENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122 (282)
T ss_pred ---HhccCCeeeecc------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 125579998743 3322 346899999999999999877776644
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.89 Score=43.95 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=56.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+..+||++|+| .|.++..+++. ....+|+++|.+++-.+.+++ ++.. ....+ . . ....+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-------------~~~~~---~-~-~~~g~ 223 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-------------YLIDD---I-P-EDLAV 223 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-------------eehhh---h-h-hccCC
Confidence 45789999975 34444455554 556789999999998888876 3311 01111 1 1 11248
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|| |...+. .+...++...+.|+++|.+++
T Consensus 224 d~vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 224 DHAF-ECVGGR------GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred cEEE-ECCCCC------ccHHHHHHHHHhCcCCcEEEE
Confidence 9887 443321 124568888899999999874
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.85 Score=42.62 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=68.2
Q ss_pred EeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCcccEEEEc
Q 038076 147 YGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIVVD 223 (345)
Q Consensus 147 IG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii~D 223 (345)
.=.|+=.++..+++ +.-+....|+.|.-.+.-+++|.- +.++++++.||.+-+.. +.++=-+|++|
T Consensus 64 ~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~---------~~~v~v~~~DG~~~l~allPP~~rRglVLID 132 (245)
T PF04378_consen 64 FYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRR---------DRRVRVHHRDGYEGLKALLPPPERRGLVLID 132 (245)
T ss_dssp EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--T---------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-
T ss_pred cCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhcc---------CCccEEEeCchhhhhhhhCCCCCCCeEEEEC
Confidence 33455555555554 678999999999999998888752 57999999999997654 45678899998
Q ss_pred CCCCCCCCCCcchHHHHHHHHhcc--CCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRL--MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L--~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
..-. .... + ....+.+.+.+ =+.|+++++....+. ...+.+.+.|++.-...+.
T Consensus 133 PpYE--~~~d-y-~~v~~~l~~a~kR~~~G~~~iWYPi~~~-----------------~~~~~~~~~l~~~~~~~~l 188 (245)
T PF04378_consen 133 PPYE--QKDD-Y-QRVVDALAKALKRWPTGVYAIWYPIKDR-----------------ERVDRFLRALKALGIKKVL 188 (245)
T ss_dssp ------STTH-H-HHHHHHHHHHHHH-TTSEEEEEEEESSH-----------------HHHHHHHHHHHHH-SSE-E
T ss_pred CCCC--CchH-H-HHHHHHHHHHHHhcCCcEEEEEeecccH-----------------HHHHHHHHHHHhcCCCCeE
Confidence 5221 1111 1 12223333333 368999999887654 3467788888876432443
|
; PDB: 2OO3_A. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.4 Score=38.69 Aligned_cols=125 Identities=18% Similarity=0.079 Sum_probs=87.9
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCcccEEE
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIV 221 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii 221 (345)
|-.=+|+=-+++.+++ ++-++...|+.|.=..+-++.|.- +.|+++..+|+..-+.. +.++=-+|+
T Consensus 93 l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~---------d~~vrv~~~DG~~~l~a~LPP~erRglVL 161 (279)
T COG2961 93 LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG---------DRRVRVLRGDGFLALKAHLPPKERRGLVL 161 (279)
T ss_pred cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC---------CcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence 5556677778888775 578999999999999999999962 68999999999987754 456788999
Q ss_pred EcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE
Q 038076 222 VDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK 300 (345)
Q Consensus 222 ~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~ 300 (345)
+|..-.. ..+. -..+.+++..++- ++|+++++....+. ...+.+.+.|++.=...+...
T Consensus 162 IDPPfE~--~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~r-----------------~~~~~f~~~L~~~~i~kiL~i 221 (279)
T COG2961 162 IDPPFEL--KDEYQRVVEALAEAYKRF-ATGTYAIWYPIKDR-----------------RQIRRFLRALEALGIRKILQI 221 (279)
T ss_pred eCCCccc--ccHHHHHHHHHHHHHHhh-cCceEEEEEeecch-----------------HHHHHHHHHHhhcCccceeee
Confidence 9853321 1111 1223344443332 58999999887665 567888888887744344433
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.89 Score=41.71 Aligned_cols=127 Identities=17% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCC--------------
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEK-------------- 191 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~-------------- 191 (345)
|.+.|..++. ..|-++-+=.||+|.+.-.+.-.++. ..|.+-|||++++++|++++.+-..+.
T Consensus 40 ~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 40 FQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 4444444433 35667888899999887655433333 799999999999999999987642110
Q ss_pred --C-------------------CCCCCcEEEEEcccccccc----cCCCcccEEEEcCCCCCCCC-----CCcchHHHHH
Q 038076 192 --P-------------------TATGGVLQVHIGDVFSPSE----DASGRYAGIVVDLFSEGKVL-----PQLEEVATWL 241 (345)
Q Consensus 192 --~-------------------~~~~~rv~v~~gDa~~~l~----~~~~~yD~Ii~D~f~~~~~p-----~~l~t~ef~~ 241 (345)
. .....-..+...|..+.-. ......|+|+-|++-+.-.- ..--...++.
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 0 1123336788888777421 13455799999997653211 1123467899
Q ss_pred HHHhccCCCcEEEE
Q 038076 242 KLKDRLMPNGRFMV 255 (345)
Q Consensus 242 ~~~~~L~pgGvlvv 255 (345)
.+...|.+++++++
T Consensus 199 ~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 199 SLAPVLPERSVVAV 212 (246)
T ss_dssp HHHCCS-TT-EEEE
T ss_pred HHHhhCCCCcEEEE
Confidence 99999977788877
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.17 Score=44.13 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=60.0
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-----
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----- 212 (345)
.+|.+|+++|.| .|.-+..+++.. +.++++.|..++..+..+..+...-.........+-. -|-..|-+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYE 93 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhH
Confidence 468999999988 566666666665 5899999999998887776553110000000000000 111111111
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 213 -----ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 213 -----~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.-..+|+||+.+--++.-.+.+.|.+.++.++ .|.+++.+...
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~-----~gsvIvDis~D 141 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMK-----PGSVIVDISCD 141 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSS-----TTEEEEETTGG
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccC-----CCceEEEEEec
Confidence 12578999975544444457788888766544 55556666543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.23 Score=45.83 Aligned_cols=60 Identities=8% Similarity=-0.052 Sum_probs=42.3
Q ss_pred EEEEEccccccccc-CCCcccEEEEcCCCCCC--------CCCC---cchHHHHHHHHhccCCCcEEEEEec
Q 038076 199 LQVHIGDVFSPSED-ASGRYAGIVVDLFSEGK--------VLPQ---LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 199 v~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~--------~p~~---l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.++++||+.+.++. ++++.|+||.|.+-... .... -+..+++.++++.|+|||.+++.+.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 36889999998866 57899999999633210 0000 1234678899999999999886543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.13 Score=45.94 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-CCCCCC--C---CCCCCCcEEEEEcccccccccC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-GLSDLE--K---PTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~--~---~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
++|.++|+| |..++..+.+ .+.+|+++|+|++.++..++-- .+.+.. . ......|+++. .|... .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~----a 73 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE----A 73 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH----H
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh----h
Confidence 368999999 4455556555 3689999999999999866522 111100 0 00012333322 22222 1
Q ss_pred CCcccEEEEcCCCCCC---CCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 214 SGRYAGIVVDLFSEGK---VLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~---~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
-+..|++|+.+..+.. .++.-+-.+..+.+.+.|+++-++++-...+.
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 2568999987655421 22223445678888888999666554433333
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.11 Score=52.79 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=80.6
Q ss_pred eEEEEeeCCCCcEEEEEeCCeEEEEEcCcC-ce---EEEEecCCCcccchHHHHHh-hcccc---CCCCCEEEEeecccH
Q 038076 82 QVVTAVRSKYNDIVIVDTPKSRMLLLDSTY-NV---HSIINKGIHKWTGSYWDEFV-SLPAI---VPNGPIAIYGLGGGT 153 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~-~~---~~~~~~~p~~l~~~Y~~~~~-~l~~~---~~p~~VLiIG~G~G~ 153 (345)
..++...-+|..+.... +.++++...+.. .. .+++.. -...|.+.+. ++|.. ..-+.+|++|||.|+
T Consensus 56 d~iW~~Nvph~~L~~~K-~~qnWv~~~gd~~~FPgggt~F~~----Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aS 130 (506)
T PF03141_consen 56 DYIWYANVPHTKLAEEK-ADQNWVRVEGDKFRFPGGGTMFPH----GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVAS 130 (506)
T ss_pred ceeeecccCchHHhhhc-ccccceeecCCEEEeCCCCccccC----CHHHHHHHHHHHhhccccCCceEEEEeccceeeh
Confidence 36677777777755433 334444443321 00 112211 2456887665 44442 233679999999999
Q ss_pred HHHHHHHhCCCCEEEE---EECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCC
Q 038076 154 AAHLMLDLWPSLKLEG---WEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKV 230 (345)
Q Consensus 154 ~~~~l~~~~p~~~v~~---VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~ 230 (345)
++.+|+++ ++.+.. -|-.+.-++.|-+. |++.. +.+ . +.+=|......||+|=|--.. +
T Consensus 131 F~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~---------~~~-~--~s~rLPfp~~~fDmvHcsrc~---i 192 (506)
T PF03141_consen 131 FGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAM---------IGV-L--GSQRLPFPSNAFDMVHCSRCL---I 192 (506)
T ss_pred hHHHHhhC--CceEEEcccccCCchhhhhhhhc-Ccchh---------hhh-h--ccccccCCccchhhhhccccc---c
Confidence 99999875 322222 24444555555443 12210 111 1 112234467889998552211 1
Q ss_pred CCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 231 LPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 231 p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+.+-..--++-++-|.|+|||.++..-
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecC
Confidence 111111225667889999999987543
|
; GO: 0008168 methyltransferase activity |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.4 Score=39.62 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCC
Q 038076 154 AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ 233 (345)
Q Consensus 154 ~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~ 233 (345)
+++.|.+..+..+|.++|.++...+.|++. +... -...+ .+.+ +.+|+||+-+ |.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~------------~~~~~-~~~~----~~~Dlvvlav------P~- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID------------EASTD-IEAV----EDADLVVLAV------PV- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS------------EEESH-HHHG----GCCSEEEE-S-------H-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee------------eccCC-HhHh----cCCCEEEEcC------CH-
Confidence 467788877789999999999999998764 3221 11122 2222 4569999843 22
Q ss_pred cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCC---EEEEEecCC-----
Q 038076 234 LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGK---VSWKRMPER----- 305 (345)
Q Consensus 234 l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~---v~~~~~~~~----- 305 (345)
-...++++++...+++|+++ +.+.+... .+++.+++..+.. +...++-+.
T Consensus 56 ~~~~~~l~~~~~~~~~~~iv-~Dv~SvK~---------------------~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~ 113 (258)
T PF02153_consen 56 SAIEDVLEEIAPYLKPGAIV-TDVGSVKA---------------------PIVEAMERLLPEGVRFVGGHPMAGPEKSGP 113 (258)
T ss_dssp HHHHHHHHHHHCGS-TTSEE-EE--S-CH---------------------HHHHHHHHHHTSSGEEEEEEESCSTSSSSG
T ss_pred HHHHHHHHHhhhhcCCCcEE-EEeCCCCH---------------------HHHHHHHHhcCcccceeecCCCCCCccccc
Confidence 24678899999988887655 45554332 4555556655523 333445443
Q ss_pred --------CCceEEEEeCCCCC
Q 038076 306 --------NGENFLALTGLLPD 319 (345)
Q Consensus 306 --------~~~n~v~~a~~~p~ 319 (345)
.+.++++......+
T Consensus 114 ~~a~~~lf~g~~~il~p~~~~~ 135 (258)
T PF02153_consen 114 EAADADLFEGRNWILCPGEDTD 135 (258)
T ss_dssp GG-TTTTTTTSEEEEEECTTS-
T ss_pred hhhcccccCCCeEEEeCCCCCh
Confidence 46777777665544
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.1 Score=41.41 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCCEEEEeecccHHHHHHHHh-C---C-C-C---EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL-W---P-S-L---KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~-~---p-~-~---~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l 210 (345)
.-+||++|....|+....+.+. + + . . .|.+||+.|. .+ -+.+.-+.+|..+--
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aP-------I~GV~qlq~DIT~~s 102 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------AP-------IEGVIQLQGDITSAS 102 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Cc-------cCceEEeecccCCHh
Confidence 3579999999999988877764 2 2 1 2 3999999653 22 356788888876531
Q ss_pred c------c-CCCcccEEEEcCCCC-CCC--CCCcchH----HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCc
Q 038076 211 E------D-ASGRYAGIVVDLFSE-GKV--LPQLEEV----ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSM 276 (345)
Q Consensus 211 ~------~-~~~~yD~Ii~D~f~~-~~~--p~~l~t~----ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~ 276 (345)
. . .+++.|+|++|.--. .++ ..+.... ..+......|+|||.++.-......
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~-------------- 168 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD-------------- 168 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc--------------
Confidence 1 1 468999999986332 111 1222222 2344556679999999877664443
Q ss_pred cchHHHHHHHHHHHHHCCCCEEEEE
Q 038076 277 NDVWMHNSAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 277 d~~~~~~~~~~~l~~~F~~~v~~~~ 301 (345)
..-++..|+..|. .|.+++
T Consensus 169 -----tslLysql~~ff~-kv~~~K 187 (294)
T KOG1099|consen 169 -----TSLLYSQLRKFFK-KVTCAK 187 (294)
T ss_pred -----hHHHHHHHHHHhh-ceeeec
Confidence 2346667888898 565544
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.2 Score=39.08 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCCCEEEEeeccc----HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCC
Q 038076 140 PNGPIAIYGLGGG----TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G----~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~ 214 (345)
+.+-+++..+++| +++.....+..+.++.+|-.|++-....++..+-... .+.++++++|..+ .+. .-
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~------~~~vEfvvg~~~e~~~~-~~ 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL------SDVVEFVVGEAPEEVMP-GL 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc------cccceEEecCCHHHHHh-hc
Confidence 4566888876654 4445555566788999999999888777777743221 2456888998654 443 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE--EecC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV--NCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv--n~~~ 259 (345)
+..|.+++|.-..+ +..++|+.++ ++|.|.+++ |...
T Consensus 114 ~~iDF~vVDc~~~d------~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 114 KGIDFVVVDCKRED------FAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred cCCCEEEEeCCchh------HHHHHHHHhc--cCCCceEEEEecccc
Confidence 68999999975422 2235555543 778887665 5443
|
The function of this family is unknown. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.063 Score=48.81 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=65.5
Q ss_pred ccc-CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 136 PAI-VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 136 ~~~-~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
|.. .+|.++|+||.|.|-++..+.-.+ .+|.+-|++..|...-++.- .+++ -..+|++ ++
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~--------------ynVl--~~~ew~~-t~ 167 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN--------------YNVL--TEIEWLQ-TD 167 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC--------------Ccee--eehhhhh-cC
Confidence 544 468899999999999988766433 56889999999988655421 1222 2234543 57
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCC-CcEEEEEe
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMP-NGRFMVNC 257 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~p-gGvlvvn~ 257 (345)
-+||+|.| .+-+. ....-..++.+...|.| +|.+++.+
T Consensus 168 ~k~dli~clNlLDR-----c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDR-----CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHh-----hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 78999975 11111 11223578899999999 88877643
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.8 Score=39.18 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~ 216 (345)
.+..+||+.|+|+ |.....+.+.. +.+|.+++.+++-.+.+++.. ... -+.....+...-+ ....+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g-~~~---------~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG-ADH---------VIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC-Cce---------eccCCcCCHHHHHHHhcCCC
Confidence 4568999999885 54555555544 489999999999888887643 111 0000001111100 123567
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|+|+.-... ...+..+.+.|+++|.++..-
T Consensus 202 ~d~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9999853211 145677788999999987543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.3 Score=36.11 Aligned_cols=86 Identities=14% Similarity=-0.000 Sum_probs=59.1
Q ss_pred cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc---cccccc-C-CCcccEEEEcC
Q 038076 150 GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV---FSPSED-A-SGRYAGIVVDL 224 (345)
Q Consensus 150 G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa---~~~l~~-~-~~~yD~Ii~D~ 224 (345)
|-|..+..+++... .+|.++|.++.-.+.++++. .. .++..+- .+.+++ . +..+|+||--.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G-a~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG-AD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-ES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc-cc------------ccccccccccccccccccccccceEEEEec
Confidence 45778888888876 99999999999999999854 21 1222222 223322 2 35899998532
Q ss_pred CCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 225 FSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 225 f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
- +.+.++.+.+.|+++|.+++--..
T Consensus 67 g----------~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 67 G----------SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp S----------SHHHHHHHHHHEEEEEEEEEESST
T ss_pred C----------cHHHHHHHHHHhccCCEEEEEEcc
Confidence 1 246788999999999998754433
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.5 Score=41.62 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCC-CCCCC-------CCcEEEEEccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLE-KPTAT-------GGVLQVHIGDV 206 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~-~~~~~-------~~rv~v~~gDa 206 (345)
++|.+||+| |+.++..+++. +.+|+++|.+++.++.+++... +.... +.... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 579999999 66666666653 5689999999999987654321 10000 00000 0122221 121
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+ .-+..|+||.-+ |+.+ ...++++++.+.++|+-+++.|..+
T Consensus 81 -~----~~~~aDlVieav------~e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 81 -E----SLSDADFIVEAV------PEKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred -H----HhCCCCEEEEcC------cCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 1 124579998744 3332 3577889999889998888755443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.4 Score=42.49 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~ 216 (345)
.+..+||+.|+| .|..+..+++......|.+++.+++-.+.+++ ++... -+.....+.....+. ....
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAMQ---------TFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCce---------EecCcccCHHHHHHHhcCCC
Confidence 356799999864 33444455555543358999999999998876 44221 011111111111111 2346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|.+++|.... ...+....+.|+++|.+++
T Consensus 229 ~d~~v~d~~G~---------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 229 FDQLILETAGV---------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CCeEEEECCCC---------HHHHHHHHHHhhcCCEEEE
Confidence 88666675432 2467778899999999764
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.61 Score=39.34 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred cchHHHHHhh-cccc-CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 125 TGSYWDEFVS-LPAI-VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 125 ~~~Y~~~~~~-l~~~-~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
.-.|++.+.. ...+ ...++|++||++-|..+.+++.. ...+|.++|.+|...+..++........ |..+-.
T Consensus 11 ~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~-----DK~v~~- 83 (156)
T PHA01634 11 ECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNIC-----DKAVMK- 83 (156)
T ss_pred cchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheee-----eceeec-
Confidence 4456654421 1112 46799999999999999988753 5689999999999999998865432110 111100
Q ss_pred EcccccccccCCCcccEEEEcCCC
Q 038076 203 IGDVFSPSEDASGRYAGIVVDLFS 226 (345)
Q Consensus 203 ~gDa~~~l~~~~~~yD~Ii~D~f~ 226 (345)
+ +| ...-+.+|+..+|.-.
T Consensus 84 -~---eW-~~~Y~~~Di~~iDCeG 102 (156)
T PHA01634 84 -G---EW-NGEYEDVDIFVMDCEG 102 (156)
T ss_pred -c---cc-cccCCCcceEEEEccc
Confidence 0 22 2245789999998744
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.4 Score=42.18 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----cCCCCCCCCC-CCCCcEEEEEcccccccccCC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY----FGLSDLEKPT-ATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~----f~~~~~~~~~-~~~~rv~v~~gDa~~~l~~~~ 214 (345)
++|.+||+| |+.++..+.+ .+.+|+++|.+++.++.+++. .+........ ....+++. ..|..+ .-
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~----~~ 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAA----AV 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHH----Hh
Confidence 679999999 6677777665 357899999999998877653 2211000000 00011221 122211 12
Q ss_pred CcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+..|+||.-+ |+.. ...+++..+...++++-+++.|..+
T Consensus 78 ~~aDlVi~av------~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 78 SGADLVIEAV------PEKLELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred ccCCEEEEec------cCcHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 4679999744 3332 3457788888777776666656554
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.97 Score=44.16 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~ 216 (345)
.+..+||++|+| .|.++.++++.....+|.+++.+++-.+.++++ +... -+.....|..+.+.. .+..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCce---------EeCCCchhHHHHHHHHhCCC
Confidence 345789998865 344555566655433799999999999999763 4321 011111122222221 2336
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+- .... .+.++.+.+.|+++|.++.
T Consensus 260 ~d~vid-~~G~---------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 260 VDYAFE-MAGS---------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCEEEE-CCCC---------hHHHHHHHHHHhcCCEEEE
Confidence 898883 2211 2457777889999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.7 Score=40.14 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred HHHHHhhcccc--CCCCCEEEEeecccHHHH--HHHHhCCCCEEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE
Q 038076 128 YWDEFVSLPAI--VPNGPIAIYGLGGGTAAH--LMLDLWPSLKLEGW--EIDEILIDKVRDYFGLSDLEKPTATGGVLQV 201 (345)
Q Consensus 128 Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~--~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v 201 (345)
|-+.+-.+|.. .+.++||++|+|.-..-+ .|++ -+.+|++| |++|++.++++ .+++++
T Consensus 10 ~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~--------------~~~i~~ 73 (223)
T PRK05562 10 YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK--------------YGNLKL 73 (223)
T ss_pred hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh--------------CCCEEE
Confidence 33334445533 357899999988655443 3333 24667766 88899887653 245777
Q ss_pred EEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 202 HIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 202 ~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+..+.. ...-..+++||.-..+ .+.=+.+.+.-+..|+++.++..
T Consensus 74 ~~r~~~---~~dl~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 74 IKGNYD---KEFIKDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EeCCCC---hHHhCCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 764432 2223568888874322 23333444444455777654443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.1 Score=45.37 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=50.2
Q ss_pred CCCEEEEeec-ccH-HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLG-GGT-AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G-~G~-~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
..+|+++|+| .|. +++.+.+ .+.+++++|.||+.++.++++ + .+++.||+.+- ++. .-+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-------------~~v~~GDat~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF-G-------------MKVFYGDATRMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc-C-------------CeEEEEeCCCHHHHHhcCCC
Confidence 3689999988 343 4445544 357899999999999998773 2 46899999874 332 346
Q ss_pred cccEEEEcCCC
Q 038076 216 RYAGIVVDLFS 226 (345)
Q Consensus 216 ~yD~Ii~D~f~ 226 (345)
+.|++++-..+
T Consensus 464 ~A~~vvv~~~d 474 (621)
T PRK03562 464 KAEVLINAIDD 474 (621)
T ss_pred cCCEEEEEeCC
Confidence 89998875533
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.1 Score=42.43 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCCEEEEee-c--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 141 NGPIAIYGL-G--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 141 p~~VLiIG~-G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+|.+||+ | ||++++.+.+.. +.+|+++|.+ .+ . ..|..+ .-+..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~-------------d~--------~-----~~~~~~----~v~~a 52 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA-------------DP--------G-----SLDPAT----LLQRA 52 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC-------------cc--------c-----cCCHHH----HhcCC
Confidence 468999999 8 899999998763 7889999974 00 0 001111 23568
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhc---cCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDR---LMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~---L~pgGvlvvn~~~~~~ 262 (345)
|+||+-.+- -.+.+.++++... |+| |.+++.+.+...
T Consensus 53 DlVilavPv-------~~~~~~l~~l~~~~~~l~~-~~iVtDVgSvK~ 92 (370)
T PRK08818 53 DVLIFSAPI-------RHTAALIEEYVALAGGRAA-GQLWLDVTSIKQ 92 (370)
T ss_pred CEEEEeCCH-------HHHHHHHHHHhhhhcCCCC-CeEEEECCCCcH
Confidence 999984322 2567788888775 556 566667775543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.2 Score=36.78 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|-+||+| |..+++.|.+ .+.+|.+.|.+++-.+...+.- . ....+..+..+ ..|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~g--------------~-~~~~s~~e~~~----~~dv 60 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSPEKAEALAEAG--------------A-EVADSPAEAAE----QADV 60 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSHHHHHHHHHTT--------------E-EEESSHHHHHH----HBSE
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccchhhhhhhHHhh--------------h-hhhhhhhhHhh----cccc
Confidence 478899998 4556666654 3678999999998887665531 2 23345455443 3499
Q ss_pred EEEcCCCCCCCCCCcchHHHHHH--HHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLK--LKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~--~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++-+.+. -...+.+.. +...|++|-++ +++.+.++
T Consensus 61 vi~~v~~~------~~v~~v~~~~~i~~~l~~g~ii-id~sT~~p 98 (163)
T PF03446_consen 61 VILCVPDD------DAVEAVLFGENILAGLRPGKII-IDMSTISP 98 (163)
T ss_dssp EEE-SSSH------HHHHHHHHCTTHGGGS-TTEEE-EE-SS--H
T ss_pred eEeecccc------hhhhhhhhhhHHhhccccceEE-EecCCcch
Confidence 99865442 133556666 77777666555 57776665
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.4 Score=42.21 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=56.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|+++|+| ||.++..|.+. +..|+.|+-.++-++.-++.-++.-.. .+....+.. ........+.||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~----~g~~~~~~~---~~~~~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVE----QGQASLYAI---PAETADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEee----CCcceeecc---CCCCcccccccCE
Confidence 479999998 56677676653 568999998865555444422211000 011111110 0001112358999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
||+-.=. ..+.+.++.++..+.++..++.
T Consensus 74 viv~vK~-------~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 74 LLLACKA-------YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEECCH-------HhHHHHHHHHHhhCCCCCEEEE
Confidence 9984321 2467889999999999987654
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.87 Score=41.02 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++++||++|.= +|.....++.. ..+|+++||+|.+-.+ ++ +++++. ..+...++.|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~------lp---------~~v~Fr-----~~~~~~~G~~ 100 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGF------LP---------NNVKFR-----NLLKFIRGEV 100 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhc------CC---------CCccHh-----hhcCCCCCce
Confidence 578999999974 66666666643 6899999999986432 33 234333 3344467899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|+ |+..-+++ +.|++ +.++|+-.++
T Consensus 101 Dliv-DlTGlGG~-----~Pe~L----~~fnp~vfiV 127 (254)
T COG4017 101 DLIV-DLTGLGGI-----EPEFL----AKFNPKVFIV 127 (254)
T ss_pred eEEE-eccccCCC-----CHHHH----hccCCceEEE
Confidence 9987 66554443 23443 4677765554
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.25 Score=46.85 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=75.7
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..-++++|||-|-... ..|...+.+.|+.-.++..|++--+ ..+..+|+... ...+..||.+
T Consensus 46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~-------------~~~~~ad~l~~-p~~~~s~d~~ 107 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG-------------DNVCRADALKL-PFREESFDAA 107 (293)
T ss_pred cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC-------------ceeehhhhhcC-CCCCCccccc
Confidence 4568999999885432 2477899999999888888776321 15777888884 3467899998
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGV 263 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~ 263 (345)
+.-++-+ +.....-....++++.+.|+|||-..+.+|+...+
T Consensus 108 lsiavih-hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~ 149 (293)
T KOG1331|consen 108 LSIAVIH-HLSTRERRERALEELLRVLRPGGNALVYVWALEQH 149 (293)
T ss_pred hhhhhhh-hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhcc
Confidence 8643332 22223344568999999999999999999988763
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.6 Score=42.38 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+.....|..+.+.. ...
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGATH---------TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCce---------EEcCCCcCHHHHHHHHhCCC
Confidence 356789999864 34455556665543469999999999999976 34221 011111222222222 234
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |.... .+.++...+.|+++|.+++
T Consensus 245 g~d~vi-d~~g~---------~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 245 GADVVI-DAVGR---------PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCEEE-ECCCC---------HHHHHHHHHHhccCCEEEE
Confidence 689887 43221 2456777788999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=89.38 E-value=1 Score=43.41 Aligned_cols=110 Identities=23% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCEEEEeecccHHHHHHHHhC--------------------CCCEEEEEECCH--HHHHHHHHhcCCC-CCCC-------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLW--------------------PSLKLEGWEIDE--ILIDKVRDYFGLS-DLEK------- 191 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~--------------------p~~~v~~VEidp--~vi~~A~~~f~~~-~~~~------- 191 (345)
.+||+||+|+|+-...+...+ +...|+.|||-+ .|++.-.....-+ ...+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999986555554433 125899999975 4554444444322 1100
Q ss_pred --CCCCCCcEEEEEcccccccccC------CCcccEEEE-----cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 192 --PTATGGVLQVHIGDVFSPSEDA------SGRYAGIVV-----DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 192 --~~~~~~rv~v~~gDa~~~l~~~------~~~yD~Ii~-----D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.....=++++.+.|..+.-... .+..|+|.+ .+|+.. .-.|..|+..+-+.++||-.+.|
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s----~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS----ISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC----hHHHHHHHHHHHhhcCCCcEEEE
Confidence 0112336788888887753321 124566643 122221 12477899999999999988664
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.31 E-value=2.1 Score=41.49 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEI---DEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEi---dp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
+..+|+++|+| .|.++.++++.. +.+|++++. ++.-.+.+++ ++... +.....|..+ .. ...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~-~Ga~~----------v~~~~~~~~~-~~-~~~ 237 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE-LGATY----------VNSSKTPVAE-VK-LVG 237 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH-cCCEE----------ecCCccchhh-hh-hcC
Confidence 56789999976 356666677665 458999986 7888888876 34221 1000111111 11 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+||- ... ....+....+.|+++|.+++
T Consensus 238 ~~d~vid-~~g---------~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 238 EFDLIIE-ATG---------VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CCCEEEE-CcC---------CHHHHHHHHHHccCCcEEEE
Confidence 6898874 221 12367788899999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.9 Score=41.44 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|++||+| |+.++..|.+. +..|+.+.-++. +..++. ++.-. ..+.+.++..-.+....+ ..+.+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~-g~~~~----~~~~~~~~~~~~~~~~~~-~~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVREN-GLQVD----SVHGDFHLPPVQAYRSAE-DMPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhC-CeEEE----eCCCCeeecCceEEcchh-hcCCCC
Confidence 4689999998 66677676653 578888888762 322221 21100 001111111000111111 236799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+||+-.-.. .+.+.++.++..+++++.++
T Consensus 75 ~vilavK~~-------~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 75 WVLVGLKTT-------ANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred EEEEEecCC-------ChHhHHHHHhhhcCCCCEEE
Confidence 999854321 34678888999999998765
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.69 Score=45.73 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+...++++|||-|...+++.. +....++++++++.-+..+........ .+.+..+..+|..+-. ..+..||.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~------l~~k~~~~~~~~~~~~-fedn~fd~ 181 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAY------LDNKCNFVVADFGKMP-FEDNTFDG 181 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHH------hhhhcceehhhhhcCC-CCccccCc
Confidence 445799999999999988775 567899999999998888776553221 1344455667766532 35788998
Q ss_pred EE-EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IV-VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii-~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+- +|+-. +.| .....|+++.+.++|||++++--+
T Consensus 182 v~~ld~~~--~~~---~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 182 VRFLEVVC--HAP---DLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEEeecc--cCC---cHHHHHHHHhcccCCCceEEeHHH
Confidence 84 45433 223 236789999999999999987433
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.9 Score=41.28 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=58.1
Q ss_pred CCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 142 GPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
.+||+.|+ |.|..+.++++.....+|.+++-+++-.+.+++.++... -+.....|..+.+.. .++.+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~---------vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA---------AINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE---------EEECCCCCHHHHHHHHCCCCce
Confidence 68999986 456666677776532379999999998888877666421 111111122222221 235799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+ |.... ..+..+.+.|+++|.++.
T Consensus 227 ~vi-d~~g~----------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYF-DNVGG----------EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEE-ECCCc----------HHHHHHHHHhccCCEEEE
Confidence 888 43221 124677789999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.93 E-value=2.7 Score=43.02 Aligned_cols=107 Identities=14% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCEEEEeecc--cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc--c--cccccc---
Q 038076 142 GPIAIYGLGG--GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD--V--FSPSED--- 212 (345)
Q Consensus 142 ~~VLiIG~G~--G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD--a--~~~l~~--- 212 (345)
.+|.+||+|- ..++..+.+.-.+.+|+++|+|++.++.-++-. .+ .. ++.+.-...+ + ..+-.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~-~~-~~-----e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ-LP-IY-----EPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC-Cc-cC-----CCCHHHHHHHhhcCCEEEEcCHHH
Confidence 4699999993 344444544333688999999999999866532 11 00 1111100000 1 111111
Q ss_pred CCCcccEEEEcCCCCCC--------CCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGK--------VLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~--------~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.-+.-|+||+.+..+.. .+.--+-.+..+.+.+.|+++-++++
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~ 125 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12457899886654321 12222345667778888877554443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.9 Score=41.18 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+..+||++|+| -|..+.++++.. +.+ |++++.+++-.+.+++ ++... -+.....| .+-+.. ..
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~-~ga~~---------~i~~~~~~-~~~~~~~~~~ 229 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA-LGADF---------VINSGQDD-VQEIRELTSG 229 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hCCCE---------EEcCCcch-HHHHHHHhCC
Confidence 356799999764 233444555554 455 9999999999999876 44321 01111112 111111 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+--. . ....+....+.|+++|.+++
T Consensus 230 ~~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 230 AGADVAIECS-G---------NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCCEEEECC-C---------CHHHHHHHHHHhhcCCEEEE
Confidence 4799988422 1 12345667788999999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.5 Score=36.58 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=39.7
Q ss_pred hcccc--CCCCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 134 SLPAI--VPNGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+|.+ ...++|+++|+|.= ..++.|++ .+.+|++| +|+..+..++. . ++++. .+.|
T Consensus 4 ~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VI--sp~~~~~l~~l---~----------~i~~~---~~~~ 63 (157)
T PRK06719 4 MYPLMFNLHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVV--SPEICKEMKEL---P----------YITWK---QKTF 63 (157)
T ss_pred ccceEEEcCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEE--cCccCHHHHhc---c----------CcEEE---eccc
Confidence 45543 46789999998832 33445554 36788888 45554433321 1 23332 2334
Q ss_pred cccCCCcccEEEEc
Q 038076 210 SEDASGRYAGIVVD 223 (345)
Q Consensus 210 l~~~~~~yD~Ii~D 223 (345)
-+..-+.+|+|+.-
T Consensus 64 ~~~dl~~a~lViaa 77 (157)
T PRK06719 64 SNDDIKDAHLIYAA 77 (157)
T ss_pred ChhcCCCceEEEEC
Confidence 33344678998874
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.71 E-value=2 Score=40.25 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+..+||++|+| -|.++..+++.....+|.++|.+++-.+.++++ +.... .++ .+..+.+.. ....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~~-----i~~------~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GATAL-----AEP------EVLAERQGGLQNGRG 187 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCcEe-----cCc------hhhHHHHHHHhCCCC
Confidence 45789999865 344455566655434599999999999998884 32210 011 010111111 2346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+|+- ... ..+.++.+.+.|+++|.+++-
T Consensus 188 ~d~vid-~~G---------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALE-FSG---------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEE-CCC---------ChHHHHHHHHHhcCCCEEEEe
Confidence 998873 321 124677788899999998753
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.71 E-value=6.3 Score=37.52 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.++..+.+ .+.+|++++.+++.++..++..............++++. ..|..+ ..+..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE----ALADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH----HHhCCCEE
Confidence 69999988 5566666665 356899999999888866654211100000000012221 122221 12467999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+-+.+ ....+.++.+...++++.+++
T Consensus 76 i~~v~~-------~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 76 LVAVPS-------QALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred EEeCCH-------HHHHHHHHHHHhhcCCCCEEE
Confidence 985433 145677788888888766544
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.1 Score=40.19 Aligned_cols=89 Identities=24% Similarity=0.326 Sum_probs=55.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |++++..+.+.....+|.++|.+++-.+.+++. +... . ..+..+ + . ..|+|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~~---------~----~~~~~~-~---~-~aD~V 62 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLVD---------E----IVSFEE-L---K-KCDVI 62 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCCc---------c----cCCHHH-H---h-cCCEE
Confidence 58899998 677888877642235899999999988877542 2210 0 012111 1 2 27999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+-+.. . ...+.+..+.. ++++.++ +.+.+
T Consensus 63 ilavp~------~-~~~~~~~~l~~-l~~~~iv-~d~gs 92 (275)
T PRK08507 63 FLAIPV------D-AIIEILPKLLD-IKENTTI-IDLGS 92 (275)
T ss_pred EEeCcH------H-HHHHHHHHHhc-cCCCCEE-EECcc
Confidence 985422 2 34567777877 8777644 45443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=88.47 E-value=4.6 Score=38.50 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=59.7
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|.+.|.+++-++..++. +... ..+..+..+ .-+.-|+|
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~-g~~~--------------~~s~~~~~~-~~~~~dvI 63 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKED-RTTG--------------VANLRELSQ-RLSAPRVV 63 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc-CCcc--------------cCCHHHHHh-hcCCCCEE
Confidence 58899998 4556666665 357899999999988876653 2111 012222211 12456999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+ |.. ...+.++.+...|++| .+++++.+...
T Consensus 64 i~~v------p~~-~~~~v~~~l~~~l~~g-~ivid~st~~~ 97 (298)
T TIGR00872 64 WVMV------PHG-IVDAVLEELAPTLEKG-DIVIDGGNSYY 97 (298)
T ss_pred EEEc------Cch-HHHHHHHHHHhhCCCC-CEEEECCCCCc
Confidence 8854 333 4567788888888776 56678776654
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.6 Score=42.47 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----C--CCCCCCCCCCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----L--SDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~--~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
.++|.+||+| |..++..++. .+.+|+.+|++|+..+.++++.. + ..... .....++++. .| ++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~-~~----l~ 78 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAP-GASPARLRFV-AT----IE 78 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCh-hhHHhhceec-CC----HH
Confidence 3689999998 5556555554 47999999999998876554321 0 00000 0001233322 12 11
Q ss_pred cCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
..-+.-|+|+-- +|+.+ ...+.|+.+-+.++|+-++..|..+.
T Consensus 79 ~av~~aDlViEa------vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 79 ACVADADFIQES------APEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred HHhcCCCEEEEC------CcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 122567888863 34333 45678999999999999888877744
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=3.1 Score=43.90 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=62.6
Q ss_pred CCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
.+|+++|+| -| .+++.+.+ .+.+++++|.||+.++.++++ + .+++.||+.+- +++ .-++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-------------~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-G-------------YKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-C-------------CeEEEeeCCCHHHHHhcCCcc
Confidence 579999887 33 34444443 357899999999999988763 2 46899999873 332 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.|++++-..+.. .+.... ...+.+.|+..+++-..+.
T Consensus 465 A~~vv~~~~d~~------~n~~i~-~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 465 AEAIVITCNEPE------DTMKIV-ELCQQHFPHLHILARARGR 501 (601)
T ss_pred CCEEEEEeCCHH------HHHHHH-HHHHHHCCCCeEEEEeCCH
Confidence 898887543321 122222 3345578888887765543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=88.14 E-value=0.4 Score=43.89 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=64.1
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-cc-cCCCccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SE-DASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~-~~~~~yD 218 (345)
+-++|+||+=..... +. ..+-..|+.+|++|.-- .|...|..+. +. ...++||
T Consensus 52 ~lrlLEVGals~~N~--~s-~~~~fdvt~IDLns~~~----------------------~I~qqDFm~rplp~~~~e~Fd 106 (219)
T PF11968_consen 52 KLRLLEVGALSTDNA--CS-TSGWFDVTRIDLNSQHP----------------------GILQQDFMERPLPKNESEKFD 106 (219)
T ss_pred cceEEeecccCCCCc--cc-ccCceeeEEeecCCCCC----------------------CceeeccccCCCCCCccccee
Confidence 468999996533322 22 23556799999976211 1445565553 21 2468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcE-----EEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGR-----FMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv-----lvvn~~~~~ 261 (345)
+|.+.+.- .++|.+-..-+++..+.+.|+|+|. +.+-+..+.
T Consensus 107 vIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 107 VISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99987655 3567777778999999999999999 766555443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.41 Score=44.56 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHhcCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP--------SLKLEGWEIDEILIDKVRDYFGL 186 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p--------~~~v~~VEidp~vi~~A~~~f~~ 186 (345)
+-+|+++|.|.|+++..+++... ..+++.||++|.+.+.-++.+.-
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999999887532 26999999999999998888753
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.4 Score=38.98 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~ 216 (345)
.+..+||+.|+| .|..+.++++.. +.+|++++.+++..+.+++ ++... -+.....+....+ ...++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~-~g~~~---------~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE-LGADE---------VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH-hCCCE---------EEcCCCcCHHHHHHHhcCCC
Confidence 456789997755 355666666654 5789999999999998866 44321 0111111111111 123567
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+++. ... ..+.++.+.+.|+++|.++.-
T Consensus 233 ~D~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 233 FDVIFD-FVG---------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ceEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 998773 211 134678888999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.07 E-value=2 Score=40.81 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=64.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCCC-----CCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPTA-----TGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~~-----~~~rv~v~~gDa~~ 208 (345)
-++|.+||+| |..++..++.. +.+|+++|.+++.++.+++... +........ .-.+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999998 66677666653 6899999999999876554321 000000000 001122 22222 1
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
- -+.-|+||.-+.... -...++|+++.+.++|+.+++.|+.+..
T Consensus 80 ~----~~~aD~Vieav~e~~-----~~k~~v~~~l~~~~~~~~il~s~tS~i~ 123 (295)
T PLN02545 80 E----LRDADFIIEAIVESE-----DLKKKLFSELDRICKPSAILASNTSSIS 123 (295)
T ss_pred H----hCCCCEEEEcCccCH-----HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 1 245799997554321 1345678888888999988887877654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.71 E-value=2 Score=39.40 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=50.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
++++++|+| |+++++.|.+. +-.|+.+|.|++.++....- ....+++++|+.+- |++ .-..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~------------~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLAD------------ELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhh------------hcceEEEEecCCCHHHHHhcCCCc
Confidence 468999999 66777777763 56899999999998763220 12378899998863 333 3578
Q ss_pred ccEEEEcCCC
Q 038076 217 YAGIVVDLFS 226 (345)
Q Consensus 217 yD~Ii~D~f~ 226 (345)
+|+++....+
T Consensus 67 aD~vva~t~~ 76 (225)
T COG0569 67 ADAVVAATGN 76 (225)
T ss_pred CCEEEEeeCC
Confidence 9999975433
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.2 Score=39.21 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=59.6
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~ 215 (345)
.+..+||+.|+ |.|..+..+++.. +.+|.++.-+++-.+.+++ ++... -+.....|..+.+.. .++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~Ga~~---------vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-LGFDA---------VFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCE---------EEeCCCccHHHHHHHHCCC
Confidence 45678999984 4556666677664 5789999999999999888 55321 011111122221211 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |... .+.++...+.|+++|.++.
T Consensus 211 gvd~vl-d~~g----------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYF-DNVG----------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEE-ECCC----------HHHHHHHHHhhccCCEEEE
Confidence 699887 4322 1456778889999999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.4 Score=43.02 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
.+++++|+| |-.+++.+.+ .+.+++++|.|++.++.++++ + .++++||+.+- +++ .-++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~~-g-------------~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRER-G-------------IRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHC-C-------------CeEEEcCCCCHHHHHhcCccc
Confidence 689999987 3344555544 257899999999999988763 2 56899999874 222 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.|.+++...+.. .+.. .-.+.+.++|+-.++.-+
T Consensus 482 a~~viv~~~~~~------~~~~-iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 482 ARWLLLTIPNGY------EAGE-IVASAREKRPDIEIIARA 515 (558)
T ss_pred cCEEEEEcCChH------HHHH-HHHHHHHHCCCCeEEEEE
Confidence 998877543321 1122 333345567777666544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=87.39 E-value=2.8 Score=36.01 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=57.4
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+|.+||+|.+..+....-...+.+|+....|++.++.-++.-.....-......+++++ ..|..+.+ +..|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----CcccEEEe
Confidence 47899999665444322222357999999999888766653321110000011224443 45554443 45799998
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
-+ |. ..-+++++.++..|+++ ..++++..
T Consensus 76 av------Ps-~~~~~~~~~l~~~l~~~-~~ii~~~K 104 (157)
T PF01210_consen 76 AV------PS-QAHREVLEQLAPYLKKG-QIIISATK 104 (157)
T ss_dssp -S-------G-GGHHHHHHHHTTTSHTT--EEEETS-
T ss_pred cc------cH-HHHHHHHHHHhhccCCC-CEEEEecC
Confidence 43 32 24578999999999555 44445543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.06 E-value=2 Score=38.03 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=59.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCCCC-----CCCCcEEEEEccccccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--S---DLEKPT-----ATGGVLQVHIGDVFSPS 210 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~---~~~~~~-----~~~~rv~v~~gDa~~~l 210 (345)
+|.+||+| |..++..++. .+.+|+.+|.|++.++.++++... . ...+.. ..-.++++ ..|.-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 47889987 2234444443 379999999999999888766531 0 000000 00123442 233222
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.. ..|+||= .+|+.+ ...++|+++.+.+.|+-+++.|..+..
T Consensus 76 --~~-~adlViE------ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 76 --AV-DADLVIE------AIPEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --GC-TESEEEE-------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --Hh-hhheehh------hccccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 22 7888884 234333 457899999999999999999977655
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.6 Score=42.78 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred CEEEEeecccHHHHHHHH----h---CCCCEEEEEECCHHHHHH----HHHhcC
Q 038076 143 PIAIYGLGGGTAAHLMLD----L---WPSLKLEGWEIDEILIDK----VRDYFG 185 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~----~---~p~~~v~~VEidp~vi~~----A~~~f~ 185 (345)
+|.+||+|+. .+..+.+ . .+..+|.-+|||++-++. +++++.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6899999986 4433332 2 455899999999976654 666654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.8 Score=41.21 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC--CCC-CCCCC-------CCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--SDL-EKPTA-------TGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~~~-~~~~~-------~~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..++. .+.+|+.+|.+|+.++.+++...- ... .+... .-.|+++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999998 6666666654 378999999999999876544210 000 00000 0112322 1222 11
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEEecCCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVNCGGIDG 262 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn~~~~~~ 262 (345)
-+..|+||--++... -...+.|..+.+.+ +|+-+++.|..+.+.
T Consensus 82 ----~~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 82 ----FADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred ----hCCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 255788886443321 24567888888888 788888887776553
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=86.75 E-value=7.4 Score=36.94 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|. |.|..+.++++.. +.++.++.-+++-.+.+++ ++... -+..... +..+.++. .+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~-lGa~~---------vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK-LGFDV---------AFNYKTVKSLEETLKKASP 205 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCE---------EEeccccccHHHHHHHhCC
Confidence 35678999984 4566666777654 5789999999998888876 45321 0111110 11111211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+ |... .+.+....+.|+++|.++.
T Consensus 206 ~gvdvv~-d~~G----------~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 206 DGYDCYF-DNVG----------GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCeEEEE-ECCC----------HHHHHHHHHHhCcCcEEEE
Confidence 5699888 4322 1245777889999999984
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.61 E-value=6.9 Score=36.80 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|++||+| |+.++..|.+. +.+|+.++.+++.++..++. ++.- .+....... ....-... .+.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~-g~~~------~~~~~~~~~-~~~~~~~~-~~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNEN-GLRL------EDGEITVPV-LAADDPAE-LGPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHc-CCcc------cCCceeecc-cCCCChhH-cCCCCEE
Confidence 68999988 44556555542 56899999988877665543 3210 011111000 00000111 2689999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++-... ....+.++.++..+.++..++.
T Consensus 71 ila~k~-------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 71 ILAVKA-------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEeccc-------ccHHHHHHHHhhhcCCCCEEEE
Confidence 985432 2357788889888988766653
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.53 E-value=8.5 Score=37.04 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...+|.+||+| ||++++.+.+. +.+|.+++.++. .+.+++ ++. .. ..|..+.+ ....
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~-~~~a~~-~gv-------------~~-~~~~~e~~---~~~a 93 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDY-SDIAAE-LGV-------------SF-FRDPDDFC---EEHP 93 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccH-HHHHHH-cCC-------------ee-eCCHHHHh---hCCC
Confidence 45689999998 67777777653 468999999974 344443 221 11 22322222 2357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHH-HhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKL-KDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~-~~~L~pgGvlvvn~~~ 259 (345)
|+|++-+ |+. ...+.+..+ ...++++. +++++.+
T Consensus 94 DvVilav------p~~-~~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 94 DVVLLCT------SIL-STEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred CEEEEec------CHH-HHHHHHHhhhhhccCCCC-EEEecCC
Confidence 9999843 222 456777777 55677765 5567765
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.5 Score=40.91 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=66.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC----------------------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK---------------------------- 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---------------------------- 191 (345)
.+-+||+=|||.|.++..|....+.++ +-|.+--|+=...--+..-..++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~q--GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQ--GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccccc--ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 356799999999999999988755444 33766555432111000000000
Q ss_pred --CC---CCCCcEEEEEcccccccccC--CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 192 --PT---ATGGVLQVHIGDVFSPSEDA--SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 192 --~~---~~~~rv~v~~gDa~~~l~~~--~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.. .....+.+--||..++-..+ .+.||+|+..-|-... ---.|+++.+...|+|||+.+ |++.-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa----~NileYi~tI~~iLk~GGvWi-NlGPL 298 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA----HNILEYIDTIYKILKPGGVWI-NLGPL 298 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech----HHHHHHHHHHHHhccCCcEEE-eccce
Confidence 00 11123444557766654332 3579999865433211 123589999999999999985 77643
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=14 Score=37.42 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=52.7
Q ss_pred CEEEEe-ec--ccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYG-LG--GGTAAHLMLDLWPSLKLEGWEIDEILI-DKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG-~G--~G~~~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+|| +| |+++++.+.+. +.+|++++.+++.. +.+.+ .+. . ...|..+. -+..|
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~-~gv-------------~-~~~~~~e~----~~~aD 60 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE-LGV-------------E-YANDNIDA----AKDAD 60 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH-cCC-------------e-eccCHHHH----hccCC
Confidence 688998 45 34566666542 46899999998775 44443 221 1 11222222 24579
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+-+ |.. ...+.++.+...++++. +++++.+
T Consensus 61 vVIlav------p~~-~~~~vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 61 IVIISV------PIN-VTEDVIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred EEEEec------CHH-HHHHHHHHHHhhCCCCC-EEEEccc
Confidence 999844 222 34577888888888766 4556654
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=4.2 Score=39.43 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=60.2
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|+ |.|..+.++++.. +.+|.+++.+++-.+.+++.++... -+..... |..+.+.. .+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~---------vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDE---------AFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCE---------EEECCCcccHHHHHHHHCC
Confidence 35678999997 3566777777764 5789999999998888875555321 0111111 22222221 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+ |... .+.+..+.+.|+++|.+++
T Consensus 227 ~gvD~v~-d~vG----------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 227 EGIDIYF-DNVG----------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCCEEEE
Confidence 4689887 4322 1356778889999999874
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.86 E-value=4.9 Score=38.03 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc----------C-CCCCCCCCCCCCcEEEEEcccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF----------G-LSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f----------~-~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
-++|.+||+| |..++..+++ .+.+|+++|.+++.++.+.+.. + ++... ....-.++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~-~~~- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA-RAAALARISTA-TDL- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEee-CCH-
Confidence 3679999998 5556666654 3678999999999988754321 1 00000 00000223332 222
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+- -+..|+||.-++... -...++++.+...++|+.+++.|+.+..
T Consensus 79 ~~----~~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 123 (292)
T PRK07530 79 ED----LADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSSIS 123 (292)
T ss_pred HH----hcCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 21 246799997543321 1345788889999999988877776554
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.79 E-value=3.9 Score=39.28 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=57.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+.++||+.|+| .|..+.++++......+.+++.+++-.+++++ ++... -+.....|..+-+.. ..+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~---------~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGATD---------IVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCce---------EecCCCCCHHHHHHHHhCCC
Confidence 356789999754 34444455555544479999999999999887 44321 111111121111111 245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+--. . ..+.+..+.+.|+++|.++.
T Consensus 235 ~~d~vld~~-g---------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-G---------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-C---------CHHHHHHHHHHhhcCCEEEE
Confidence 699888421 1 12467888899999998873
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.66 E-value=8.8 Score=36.55 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|++.|.+++..+.+++ .+. + ...+..+.++. .+..|+|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~-~g~-------------~-~~~s~~~~~~~-~~~advV 63 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE--DGHEVVGYDVNQEAVDVAGK-LGI-------------T-ARHSLEELVSK-LEAPRTI 63 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHH-CCC-------------e-ecCCHHHHHHh-CCCCCEE
Confidence 57889888 4566666665 35789999999988776644 221 1 11232232221 1236888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+.+. -...+.+..+...|++| .+++++.+...
T Consensus 64 i~~vp~~------~~~~~v~~~i~~~l~~g-~ivid~st~~~ 98 (299)
T PRK12490 64 WVMVPAG------EVTESVIKDLYPLLSPG-DIVVDGGNSRY 98 (299)
T ss_pred EEEecCc------hHHHHHHHHHhccCCCC-CEEEECCCCCc
Confidence 8755432 13355667777777665 56678866554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=85.62 E-value=3 Score=41.84 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=48.3
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cc-cCC
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SE-DAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~-~~~ 214 (345)
..++++++|+| |-.+++.|.+ .+..++++|.||+.++..++.+ +.+.++.||+.+. +. ..-
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~~~~~~~~~~~------------~~~~~i~gd~~~~~~L~~~~~ 295 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDPERAEELAEEL------------PNTLVLHGDGTDQELLEEEGI 295 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHC------------CCCeEEECCCCCHHHHHhcCC
Confidence 46789999986 2233444333 3578999999999988777643 1356899999753 22 234
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
+++|.|++-.
T Consensus 296 ~~a~~vi~~~ 305 (453)
T PRK09496 296 DEADAFIALT 305 (453)
T ss_pred ccCCEEEECC
Confidence 6899988743
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.7 Score=39.67 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-- 212 (345)
.+..+|+++|+|+ |..+..+++.. +.+|.+++.+++-.+.+++ ++... -+.... .|..+.+..
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG-FGADL---------TLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-hCCce---------EecCccccHHHHHHHHHhhc
Confidence 3567899999853 55555666655 4689999999999999976 45321 011111 122221211
Q ss_pred CCCcccE---EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAG---IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~---Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|. +++|.... ...++.+.+.|+++|.+++
T Consensus 234 ~~~g~d~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGS---------KPGQESALSLLSHGGTLVV 270 (349)
T ss_pred ccCCCCCCcCEEEECCCC---------hHHHHHHHHHHhcCCeEEE
Confidence 1234551 34454321 2356667788999999864
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.8 Score=43.71 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
.||+||.|+|-+.....+. ..-.++++|.=.-|.+.|++-....+. ..++++|..---+.-.....+-|+++-
T Consensus 69 ~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~------SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGM------SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCC------ccceeeeccccceeeecCcchhhhhhH
Confidence 4789999999998877765 356799999999999999987654432 456777765443332222356788876
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcE
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGR 252 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv 252 (345)
..|+..-+-.. ...-|+.+.++|-..|+
T Consensus 142 e~fdtEligeG--alps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 142 EDFDTELIGEG--ALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhhhccc--cchhHHHHHHHhcccCC
Confidence 66653211110 01235666666644443
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=85.43 E-value=8.1 Score=37.12 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=54.6
Q ss_pred CEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+|. | +++..+.......++..+|++++..+ .+.+.-.... .. +...+..+|-. .-+..|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-----~~-~~~~i~~~d~~-----~l~~aDi 70 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-----FV-KPVRIYAGDYA-----DCKGADV 70 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-----cc-CCeEEeeCCHH-----HhCCCCE
Confidence 589999983 3 44444443322368999999987665 3333322111 11 22344444422 2367899
Q ss_pred EEEcCCCCCCCCCCc-----chHHHHHHHHhc---cCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQL-----EEVATWLKLKDR---LMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l-----~t~ef~~~~~~~---L~pgGvlvvn 256 (345)
|++-+..+....... .+.+.++.+.+. ..|+|++++-
T Consensus 71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 998665443221111 134445544433 5688886643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=5.4 Score=37.63 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=52.6
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|++||+| |+.++..|.+. +.+|+.++. ++-++..++. ++.-. ..+....+ ......-.....+.+|+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~-g~~~~----~~~~~~~~-~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRER-GLVIR----SDHGDAVV-PGPVITDPEELTGPFDLV 72 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhC-CeEEE----eCCCeEEe-cceeecCHHHccCCCCEE
Confidence 68999988 44455555543 567999998 6666655542 21100 00111111 000001011123679999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+-.... ...+.++.++..++++.+++
T Consensus 73 ilavk~~-------~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 73 ILAVKAY-------QLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred EEEeccc-------CHHHHHHHHHhhcCCCCEEE
Confidence 9854321 34678888888888876654
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=85.39 E-value=7.5 Score=37.14 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| .|..+.++++..+..++.+++.++.-.+.++++ +... -+.....|....+.. ...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~---------~v~~~~~~~~~~i~~~~~~~ 234 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GATH---------TVNSAKGDAIEQVLELTDGR 234 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCc---------eeccccccHHHHHHHHhCCC
Confidence 456788887643 222333445555437899999999888888764 3221 111111222111111 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |... ....++.+.+.|+++|.++.
T Consensus 235 ~~d~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVI-EAVG---------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEE-ECCC---------CHHHHHHHHHhccCCcEEEE
Confidence 699887 3321 12356777899999999863
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=85.34 E-value=3.7 Score=39.33 Aligned_cols=93 Identities=11% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE-EcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH-IGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~-~gDa~~~l~~~~~~y 217 (345)
.+++|++||.|. |......++.. +.+|++++.++.-.+.++.. +. +.+ ..+..+. -..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~-G~-------------~~~~~~~l~~~----l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM-GL-------------SPFHLSELAEE----VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CC-------------eeecHHHHHHH----hCCC
Confidence 578999999873 33333333444 47999999999877666552 21 111 1222222 2469
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+||.-. |..+.+.+ ..+.++|+++ ++++.....
T Consensus 212 DiVI~t~------p~~~i~~~----~l~~~~~g~v-IIDla~~pg 245 (296)
T PRK08306 212 DIIFNTI------PALVLTKE----VLSKMPPEAL-IIDLASKPG 245 (296)
T ss_pred CEEEECC------ChhhhhHH----HHHcCCCCcE-EEEEccCCC
Confidence 9999732 33334444 3456777654 567765554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.30 E-value=5.4 Score=38.17 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD 182 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~ 182 (345)
++|.+||+| |+.++..+++. +.+|+++|.+++.++.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHH
Confidence 479999988 55677666653 5789999999998886653
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.24 E-value=6.5 Score=37.74 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+.|+| .|..+.++++.. +.+|++++.+++-.+.+++. +... ++. ..+ ...+.+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-Ga~~------------vi~--~~~---~~~~~~ 224 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-GAAS------------AGG--AYD---TPPEPL 224 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-CCce------------ecc--ccc---cCcccc
Confidence 356789999964 344555566554 56899999999999999884 3221 111 001 112458
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+++... . . .+.+....+.|+++|.+++
T Consensus 225 d~~i~~~--~--~------~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 225 DAAILFA--P--A------GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred eEEEECC--C--c------HHHHHHHHHhhCCCcEEEE
Confidence 8765421 1 1 1367788889999999864
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.14 E-value=11 Score=35.81 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|.++|.+++..+.+.+. + +++ ..+..+..+. -+.-|+|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-------------~~~-~~~~~e~~~~-~~~~dvv 63 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR--GGHEVVGYDRNPEAVEALAEE-G-------------ATG-ADSLEELVAK-LPAPRVV 63 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHC-C-------------Cee-cCCHHHHHhh-cCCCCEE
Confidence 58889988 4556666665 357899999999888766542 2 111 1233333221 1235888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+.+. -...+.+..+...|++| .+++++.+...
T Consensus 64 i~~v~~~------~~~~~v~~~l~~~l~~g-~ivid~st~~~ 98 (301)
T PRK09599 64 WLMVPAG------EITDATIDELAPLLSPG-DIVIDGGNSYY 98 (301)
T ss_pred EEEecCC------cHHHHHHHHHHhhCCCC-CEEEeCCCCCh
Confidence 8754332 13355667777888776 55567765554
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.90 E-value=3 Score=43.07 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCC-----CCCCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKP-----TATGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~-----~~~~~rv~v~~gDa~~ 208 (345)
-++|.+||+| |+.++..++. .+..|+++|.+++.++.++++.. +....+. ...-.|++.. .|...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~ 83 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD 83 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 4789999998 5556666654 37899999999999988644331 0000000 0001123332 22211
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-..-|+||--++.... ....+|..+.+.++|+.+++.|+.+.+.
T Consensus 84 -----~~~aDlViEav~E~~~-----vK~~vf~~l~~~~~~~ailasntStl~i 127 (507)
T PRK08268 84 -----LADCDLVVEAIVERLD-----VKQALFAQLEAIVSPDCILATNTSSLSI 127 (507)
T ss_pred -----hCCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1368999975544321 3456788888888899888888877654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.4 Score=41.67 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-----------CCCCCCCCCCCCCcEEEEEccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-----------GLSDLEKPTATGGVLQVHIGDVFS 208 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-----------~~~~~~~~~~~~~rv~v~~gDa~~ 208 (345)
++|.+||+| |..++..+.+ .+.+|+.+|.+++.++.+++.. .+...........++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence 579999998 4555555554 3578999999999888776542 110000000001233322 23222
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.-+.-|+||.-++. .+ ...+.++++...++++-+++.|..+.
T Consensus 81 ----a~~~aDlVieavpe------~~~~k~~~~~~l~~~~~~~~ii~sntSt~ 123 (287)
T PRK08293 81 ----AVKDADLVIEAVPE------DPEIKGDFYEELAKVAPEKTIFATNSSTL 123 (287)
T ss_pred ----HhcCCCEEEEeccC------CHHHHHHHHHHHHhhCCCCCEEEECcccC
Confidence 12567999975432 22 35678888888888888776665543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=7.9 Score=39.67 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=62.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.+++.|.+. +.+|++.+.+++.++...+..... +..++ ...|..++++.. ++.|+|
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~~--------g~~i~-~~~s~~e~v~~l-~~~d~I 70 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKEG--------NTRVK-GYHTLEELVNSL-KKPRKV 70 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhhc--------CCcce-ecCCHHHHHhcC-CCCCEE
Confidence 68899999 66777777753 568999999999988665532110 11111 223444444321 246877
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+..+ -...+.++.+...|++|- +++++.+...
T Consensus 71 il~v~~~------~~v~~vi~~l~~~L~~g~-iIID~gn~~~ 105 (470)
T PTZ00142 71 ILLIKAG------EAVDETIDNLLPLLEKGD-IIIDGGNEWY 105 (470)
T ss_pred EEEeCCh------HHHHHHHHHHHhhCCCCC-EEEECCCCCH
Confidence 7644332 244667788888888664 5577776654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.71 E-value=9.2 Score=40.95 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+.+|.+||+| |+.+++.+.+. +.+|.+++.++.. +.|+++ + +.. ..|..+.+ .+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~~-G-------------v~~-~~d~~e~~---~~~a 109 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARSL-G-------------VSF-FLDPHDLC---ERHP 109 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHHc-C-------------CEE-eCCHHHHh---hcCC
Confidence 45789999998 67788777754 4689999998553 444432 2 111 22333321 2347
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHH-hccCCCcEEEEEecCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLK-DRLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~-~~L~pgGvlvvn~~~~ 260 (345)
|+|++-+ |.. .+.+++..+. ..+++|. +++++.+.
T Consensus 110 DvViLav------P~~-~~~~vl~~l~~~~l~~g~-iVvDv~Sv 145 (667)
T PLN02712 110 DVILLCT------SII-STENVLKSLPLQRLKRNT-LFVDVLSV 145 (667)
T ss_pred CEEEEcC------CHH-HHHHHHHhhhhhcCCCCe-EEEECCCC
Confidence 9999843 221 4566777765 4566655 77788633
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.60 E-value=5.7 Score=38.54 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+.++||+.|+ |-|+++.+|++.... ++.++=-+++=.+.+++... +.-+.+...|..+-+++ .+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA----------d~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA----------DHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC----------CEEEcCCcccHHHHHHHHcCC
Confidence 35688999995 466888899988755 44444445555557777553 12233334443333322 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+.+|+|+-- ...+.+....+.|+++|.++..-.
T Consensus 210 ~gvDvv~D~-----------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDT-----------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEEC-----------CCHHHHHHHHHHhccCCEEEEEec
Confidence 579999842 123567778899999999886444
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=4.6 Score=41.08 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=43.3
Q ss_pred hcccc--CCCCCEEEEeecccHHHH--HHHHhCCCCEEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 134 SLPAI--VPNGPIAIYGLGGGTAAH--LMLDLWPSLKLEGW--EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G~~~~--~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+|.+ ...++||++|+|.=..-+ .+++ -+.+|++| |+++++-+++. ..+++++..+
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~--~ga~v~visp~~~~~~~~l~~--------------~~~i~~~~~~-- 64 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLD--AGARLTVNALAFIPQFTAWAD--------------AGMLTLVEGP-- 64 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHh--------------CCCEEEEeCC--
Confidence 45543 467999999988544433 3333 35677777 77888766543 2457776644
Q ss_pred cccccCCCcccEEEEcC
Q 038076 208 SPSEDASGRYAGIVVDL 224 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~ 224 (345)
|....-+.+|+||...
T Consensus 65 -~~~~dl~~~~lv~~at 80 (457)
T PRK10637 65 -FDESLLDTCWLAIAAT 80 (457)
T ss_pred -CChHHhCCCEEEEECC
Confidence 3222235678888643
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=84.17 E-value=3.4 Score=37.17 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEid 173 (345)
...+|+++|+|+ |+ ++..|. ..+-.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCC
Confidence 467999999983 44 444444 4455699999988
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=84.13 E-value=4.7 Score=38.42 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=54.9
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+..+||+.|+| .|..+..+++......+.+++.++...+.++++ +.. .-+.....+..+.+.. .++.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~~---------~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GAT---------DIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CCc---------EEEcCCcchHHHHHHHHcCCCC
Confidence 45678885543 244444555555434788889999888887764 211 1111111222222221 2357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+- .... .+.++.+.+.|+++|.++.
T Consensus 237 ~d~vld-~~g~---------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 237 VDCVIE-AVGF---------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CcEEEE-ccCC---------HHHHHHHHHHhhcCCEEEE
Confidence 998873 2111 2467888899999998763
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.96 E-value=17 Score=34.34 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC----CEEEEEECCHHHHHH-----HHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS----LKLEGWEIDEILIDK-----VRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~----~~v~~VEidp~vi~~-----A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
..+....++|.|..+=++.+++.+.. .+..-+|++..+++. .++|.+++ +.-+.+|-..-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-----------v~~l~~~~~~~ 145 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-----------VNALCGDYELA 145 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-----------EeehhhhHHHH
Confidence 35678999999999989888876544 789999999999874 34554432 55566776666
Q ss_pred cccCCCcccEEEEcCCC-CCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCC--CccccCCCCCCCccchHHHHHHH
Q 038076 210 SEDASGRYAGIVVDLFS-EGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGV--SDMTYGAARPKSMNDVWMHNSAI 286 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~-~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~--~~~~~g~~~~~~~d~~~~~~~~~ 286 (345)
|...++.=--+++=+-+ -+.. .+-...-|+..++..|+||-.+.+-+-...+. .+...++-+.+ ...+..+++
T Consensus 146 La~~~~~~~Rl~~flGStlGN~-tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gV---Ta~FnlNvL 221 (321)
T COG4301 146 LAELPRGGRRLFVFLGSTLGNL-TPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGV---TAEFNLNVL 221 (321)
T ss_pred HhcccCCCeEEEEEecccccCC-ChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccch---HHHHHHHHH
Confidence 65544222222221111 1111 11133569999999999999988765433320 00000000001 125677888
Q ss_pred HHHHHHCCCC
Q 038076 287 RALSEAFPGK 296 (345)
Q Consensus 287 ~~l~~~F~~~ 296 (345)
+.++.+|.+.
T Consensus 222 a~lNr~f~~n 231 (321)
T COG4301 222 AHLNRVFGGN 231 (321)
T ss_pred HHHHHHhccC
Confidence 8888888754
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=8.2 Score=41.53 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| |+.+++.+.+.....+|.++|.+++-.+.++++ +... . ...|..+. -+..|+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~~--------~----~~~~~~~~----~~~aDv 66 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVID--------R----GEEDLAEA----VSGADV 66 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCCC--------c----ccCCHHHH----hcCCCE
Confidence 679999988 566777766542125799999999988877653 2110 0 01121121 246799
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+ |+. ...+.++.++..++++ .+++++.+..
T Consensus 67 Vilav------p~~-~~~~vl~~l~~~~~~~-~ii~d~~svk 100 (735)
T PRK14806 67 IVLAV------PVL-AMEKVLADLKPLLSEH-AIVTDVGSTK 100 (735)
T ss_pred EEECC------CHH-HHHHHHHHHHHhcCCC-cEEEEcCCCc
Confidence 99743 222 3567788888888765 5666666544
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=83.82 E-value=5.5 Score=37.30 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCCCEEEEeecccHHHHH---HHHhC--CCCEEEEEECCH--------------------------HHHHHHHHhcCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHL---MLDLW--PSLKLEGWEIDE--------------------------ILIDKVRDYFGLS 187 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~---l~~~~--p~~~v~~VEidp--------------------------~vi~~A~~~f~~~ 187 (345)
.-|..+++.|+=-|..+.. +++.+ ++-++.+.|-=. .-.+..+++|.--
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3578999999866654433 33322 345677666311 1234445555322
Q ss_pred CCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 188 DLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 188 ~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
. ..+++++++.|+..+.+.. +.+++-++-+|+.- + -.|.+.++.++.+|.|||++++.=+..
T Consensus 153 g-----l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--Y----esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 153 G-----LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--Y----ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp T-----TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--H----HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred C-----CCcccEEEECCcchhhhccCCCccEEEEEEeccc--h----HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1 2357999999999888865 45677777777522 1 136789999999999999999865544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.39 E-value=5.3 Score=39.21 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||++|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+.... .|..+.+.. ..
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~---------~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGITD---------FINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCCcE---------EEecccccchHHHHHHHHhC
Confidence 356789999865 34444555665543479999999999999977 34321 111111 011122221 22
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .... .+.++...+.++++ |.+++
T Consensus 267 ~g~dvvid-~~G~---------~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFE-CAGN---------VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEE-CCCC---------hHHHHHHHHhhhcCCCEEEE
Confidence 36998873 2221 24567777788886 88654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.28 E-value=4.2 Score=34.13 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=52.8
Q ss_pred EEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-cCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 144 IAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDY-FGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 144 VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~-f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
|+++|+| -| .++..|.+ .+.+|+.+.-.+ -.+.-++. +.+.. .+.+-.+.............+.||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITG------PDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEE------TTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEe------cccceecccccccCcchhccCCCcEE
Confidence 6788887 33 34444433 678999999988 44433322 21111 01011111111111001235789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+-. ......+.++.++..++++..+++
T Consensus 72 iv~v-------Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAV-------KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-S-------SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEe-------cccchHHHHHHHhhccCCCcEEEE
Confidence 9843 223567889999999999976653
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=83.14 E-value=4.9 Score=35.25 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..++|.+||+| .|......++.+ +.+|.+++..+.-.+.+... + + ...+..+.+ ++.|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-~-------------~--~~~~l~ell----~~aD 93 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-G-------------V--EYVSLDELL----AQAD 93 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-T-------------E--EESSHHHHH----HH-S
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-c-------------c--eeeehhhhc----chhh
Confidence 57899999987 343333444444 58999999999876622221 1 1 111333333 4689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
+|++-+..... ..++.+.++|+ .+++ |.+++|+....- + -...++++|++
T Consensus 94 iv~~~~plt~~-T~~li~~~~l~----~mk~-ga~lvN~aRG~~----v-------------de~aL~~aL~~ 143 (178)
T PF02826_consen 94 IVSLHLPLTPE-TRGLINAEFLA----KMKP-GAVLVNVARGEL----V-------------DEDALLDALES 143 (178)
T ss_dssp EEEE-SSSSTT-TTTSBSHHHHH----TSTT-TEEEEESSSGGG----B--------------HHHHHHHHHT
T ss_pred hhhhhhccccc-cceeeeeeeee----cccc-ceEEEeccchhh----h-------------hhhHHHHHHhh
Confidence 99986644221 35677888776 4454 556679875543 1 24577778874
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=82.97 E-value=2.9 Score=33.55 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=44.8
Q ss_pred CEEEEeecccHHH--HHHHHhCCCCEEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGGGTAA--HLMLDLWPSLKLE-GWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~G~~~--~~l~~~~p~~~v~-~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+|...-. ..+.+..++.++. ++|.+++-.+.+.+.++. . ...|..+.+.. ...|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-------------~-~~~~~~~ll~~--~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-------------P-VYTDLEELLAD--EDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-------------E-EESSHHHHHHH--TTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-------------c-chhHHHHHHHh--hcCCE
Confidence 6889999754322 2344444666665 789999998887777653 2 55676666643 47999
Q ss_pred EEEcC
Q 038076 220 IVVDL 224 (345)
Q Consensus 220 Ii~D~ 224 (345)
|++-.
T Consensus 66 V~I~t 70 (120)
T PF01408_consen 66 VIIAT 70 (120)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99854
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=82.90 E-value=12 Score=38.47 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...++|+++|+| -|......++.+ +.+|.++|+||.-...|... +. .+. +..+.+ +..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~-G~-------------~vv--~leEal----~~A 310 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME-GY-------------QVL--TLEDVV----SEA 310 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc-CC-------------eec--cHHHHH----hhC
Confidence 357899999998 333333333444 57999999999765444332 11 111 111222 357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|+... + . .++. .....+.|++||+++ |+...+
T Consensus 311 DVVI~tT--G-t--~~vI----~~e~L~~MK~GAiLi-NvGr~~ 344 (477)
T PLN02494 311 DIFVTTT--G-N--KDII----MVDHMRKMKNNAIVC-NIGHFD 344 (477)
T ss_pred CEEEECC--C-C--ccch----HHHHHhcCCCCCEEE-EcCCCC
Confidence 9988621 1 1 1222 244556788888875 887654
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.89 E-value=7 Score=37.19 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||+.|+|+ |..+..+++..+..++.+++.++...+.++++ +... -+.....+..... .....+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~~---------vi~~~~~~~~~~~-~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GADE---------TVNLARDPLAAYA-ADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCCE---------EEcCCchhhhhhh-ccCCCcc
Confidence 567899977654 45555566654323799999999998887774 3211 0100011111221 1234589
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+--. .. ...++.+.+.|+++|.++.
T Consensus 234 ~vld~~-g~---------~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 234 VVFEAS-GA---------PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEEECC-CC---------HHHHHHHHHHHhcCCEEEE
Confidence 987421 11 2357788899999999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=82.75 E-value=11 Score=33.12 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCCCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
...++++++|-| .| ..++.++. -+.+|+++|+||.-.-.|. .. ..++. + +++.-+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DPi~alqA~--~d------------Gf~v~--~----~~~a~~~ 78 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDPIRALQAA--MD------------GFEVM--T----LEEALRD 78 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSHHHHHHHH--HT------------T-EEE-------HHHHTTT
T ss_pred eCCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECChHHHHHhh--hc------------CcEec--C----HHHHHhh
Confidence 457899999988 33 44455544 3689999999995443332 21 12222 1 2223356
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.|+|+.--- .....+.|.|+. -++|.++.|+.+.+.
T Consensus 79 adi~vtaTG-----~~~vi~~e~~~~-----mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 79 ADIFVTATG-----NKDVITGEHFRQ-----MKDGAILANAGHFDV 114 (162)
T ss_dssp -SEEEE-SS-----SSSSB-HHHHHH-----S-TTEEEEESSSSTT
T ss_pred CCEEEECCC-----CccccCHHHHHH-----hcCCeEEeccCcCce
Confidence 798886311 223345666654 346788889998775
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=5.3 Score=39.83 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=56.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC---CCCCcEEEEEc-ccccccccCCCc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT---ATGGVLQVHIG-DVFSPSEDASGR 216 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~---~~~~rv~v~~g-Da~~~l~~~~~~ 216 (345)
+|.+||+| |..++..+ .. +.+|+++|+|++.++..++....-. +... ....+.++... |.. ...+.
T Consensus 2 kI~VIGlGyvGl~~A~~l-A~--G~~VigvD~d~~kv~~l~~g~~~~~-e~~l~~~l~~~~~~l~~t~~~~----~~~~~ 73 (388)
T PRK15057 2 KITISGTGYVGLSNGLLI-AQ--NHEVVALDILPSRVAMLNDRISPIV-DKEIQQFLQSDKIHFNATLDKN----EAYRD 73 (388)
T ss_pred EEEEECCCHHHHHHHHHH-Hh--CCcEEEEECCHHHHHHHHcCCCCCC-CcCHHHHHHhCCCcEEEecchh----hhhcC
Confidence 58899998 33455333 32 5789999999999998876432110 0000 00011111111 000 11256
Q ss_pred ccEEEEcCCCCCCCC---CCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVL---PQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p---~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-|+||+.+..+.... ..+ +-.+.++.+.+ +++| .++++..+...
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g-~lVV~~STv~p 121 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPY-AVMVIKSTVPV 121 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCC-CEEEEeeecCC
Confidence 799998776642211 111 22345566666 6665 45555554444
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.74 E-value=1.9 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR 181 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~ 181 (345)
....+|..||.||..+.-++.+. | .+|++|||+|.-+.+.+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~ 102 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHH
Confidence 34678999999998777777653 4 79999999999988755
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=6.1 Score=37.52 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
.+..+||+.|+| -|..+..+++...+.+|+++.-+++-.+.+++ ++.... +.... .+..+.+....+.
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~v---------~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADLT---------INSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcEE---------ecccccccHHHHHHHhcCC
Confidence 456789999953 23344444454336789999999999999965 453210 11000 1111222222235
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|.++.+... .+.++.+.+.|+++|.++.
T Consensus 231 ~d~vi~~~~~----------~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAVA----------KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCCC----------HHHHHHHHHhccCCCEEEE
Confidence 8877665322 3567888899999999874
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=82.45 E-value=4.1 Score=31.41 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=51.0
Q ss_pred CEEEEeec--ccHHHHHHHHhC-CCCEEEEE-ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLW-PSLKLEGW-EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~-p~~~v~~V-Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+||+| +..+++.+.+.. +..+|..+ +.+|+-.+...+.++ +.+...|..+.+ +..|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~----~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAA----QEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHH----HHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhh----ccCC
Confidence 46778766 344555554431 23788855 999998887777664 223322433333 3689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+||+-+ ++. .-.+.+..+ ..+.++.+++
T Consensus 64 vvilav------~p~-~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 64 VVILAV------KPQ-QLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EEEE-S-------GG-GHHHHHHHH-HHHHTTSEEE
T ss_pred EEEEEE------CHH-HHHHHHHHH-hhccCCCEEE
Confidence 999843 222 335677777 6666666654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=82.41 E-value=9.4 Score=36.46 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=59.9
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|+ |-|..+.++++.. +.+|.++..+++-.+.+++.++... -+..... |..+.+.. .+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~---------vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDD---------AFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCce---------eEEcCCcccHHHHHHHhCC
Confidence 45678999986 4556666667654 5789999999999888887555321 0110011 22121211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+ |... ...+..+.+.|+++|.++.
T Consensus 220 ~gvd~v~-d~~g----------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 220 NGIDIYF-DNVG----------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCcEEEE
Confidence 5789887 4322 1356778899999999874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.12 E-value=22 Score=29.64 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=42.7
Q ss_pred CCCCCEEEEeecc--cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGG--GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~--G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.++++++++|+|. ..+++.+.+. ...+|++++.+++-.+...+.++.. .+.....|..+ .-+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~~ 81 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL----------GIAIAYLDLEE----LLAE 81 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc----------ccceeecchhh----cccc
Confidence 3468899999862 3444444432 2468999999988766544444311 01111122222 1367
Q ss_pred ccEEEEcCCCC
Q 038076 217 YAGIVVDLFSE 227 (345)
Q Consensus 217 yD~Ii~D~f~~ 227 (345)
.|+|++-....
T Consensus 82 ~Dvvi~~~~~~ 92 (155)
T cd01065 82 ADLIINTTPVG 92 (155)
T ss_pred CCEEEeCcCCC
Confidence 99999866554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.09 E-value=11 Score=37.67 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=47.7
Q ss_pred CCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCCCccc
Q 038076 142 GPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~~~yD 218 (345)
++||+||+| -|+.+.+.+....+.+|++.|-+++-.+.+....+ ++++.+.=|+.+. +...=+.+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------GKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------ccceeEEecccChHHHHHHHhcCC
Confidence 589999996 34444444444455899999999888887766542 3677777777664 112224559
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
++|.-+
T Consensus 71 ~VIn~~ 76 (389)
T COG1748 71 LVINAA 76 (389)
T ss_pred EEEEeC
Confidence 888643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.93 E-value=9.3 Score=35.62 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=53.8
Q ss_pred hHHHHHhhccc-----cC-CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 127 SYWDEFVSLPA-----IV-PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 127 ~Y~~~~~~l~~-----~~-~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
.|.+.+.-+.. .. +.-++|+||.|+..+=-.+-.+-=+.+.++-|||+.-++.|+-.....+. ....++
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~-----l~~~I~ 133 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG-----LERAIR 133 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc-----hhhhee
Confidence 46665543332 11 34568888888765422222221147999999999999999877643320 123344
Q ss_pred EEEc-ccccccc---cCCCcccEEEEcC
Q 038076 201 VHIG-DVFSPSE---DASGRYAGIVVDL 224 (345)
Q Consensus 201 v~~g-Da~~~l~---~~~~~yD~Ii~D~ 224 (345)
+... |-...+. ...++||..+|..
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred EEeccCccccccccccccceeeeEecCC
Confidence 4433 2222222 2478999999853
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.80 E-value=14 Score=34.76 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |+.++..+.+ .+.+|.++|.+++.++.+.+. + +. ...|..+. -+..|+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~~~-g-------------~~-~~~~~~e~----~~~~d~ 61 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVYDRNPEAVAEVIAA-G-------------AE-TASTAKAV----AEQCDV 61 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHHC-C-------------Ce-ecCCHHHH----HhcCCE
Confidence 369999998 3566777665 357899999999887765442 1 11 11222222 246799
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+-+.... ...+.+ +.+...+++ |.+++|+.+...
T Consensus 62 vi~~vp~~~------~~~~v~~~~~~~~~~~~~-g~iiid~st~~~ 100 (296)
T PRK11559 62 IITMLPNSP------HVKEVALGENGIIEGAKP-GTVVIDMSSIAP 100 (296)
T ss_pred EEEeCCCHH------HHHHHHcCcchHhhcCCC-CcEEEECCCCCH
Confidence 998654321 122222 235556655 555568876654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=81.74 E-value=5.6 Score=39.07 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||+.|+| -|.++.++++......|.+++.+++-.+.|+++ +... -+.... .|..+.+.. ..
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~~---------~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVTD---------FINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCcE---------EEcccccchHHHHHHHHHhC
Confidence 456789999864 334444555555434689999999999998764 4321 011111 122222221 22
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .-.. ...+..+.+.|+++ |.+++
T Consensus 262 ~g~d~vid-~~G~---------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSFE-CVGD---------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEEE-CCCC---------hHHHHHHHHhhccCCCEEEE
Confidence 36898873 2221 23566777889998 99875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=81.66 E-value=11 Score=37.75 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.0
Q ss_pred CEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCcc
Q 038076 143 PIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRY 217 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~y 217 (345)
+|+++|+| .+++.+.+. ..+.+++++|.|++-++.+++.+ .++++.+|+.+. +.. .-+.+
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------------DVRTVVGNGSSPDVLREAGAEDA 66 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------------CEEEEEeCCCCHHHHHHcCCCcC
Confidence 68888875 444444432 13578999999999888766533 267888998753 222 24679
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|.|++-.
T Consensus 67 ~~vi~~~ 73 (453)
T PRK09496 67 DLLIAVT 73 (453)
T ss_pred CEEEEec
Confidence 9888744
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=4.9 Score=39.32 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=23.6
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECCH
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEidp 174 (345)
...+|+++|+|+ |+ ++..|.+ ..-.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 467899999983 43 4444443 3446999999885
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.21 E-value=11 Score=35.22 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---cccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~~~~~ 216 (345)
.+.+||++|.|+|..+.... .....++..-|+-..+..+... -.... .........+.+.. +++... ......
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~-~~~~~-~~l~~~g~~v~v~~L~Wg~~~~~-~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFN-RDKNN-IALNQLGGSVIVAILVWGNALDV-SFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHh-hhhhh-hhhhhcCCceeEEEEecCCcccH-hhccCC
Confidence 46689999999995554444 4456777777775555444322 11000 00000011222211 222221 122233
Q ss_pred -ccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 -YAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 -yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+. |.+-....+. .....++..|..+|++.+
T Consensus 162 ~~DlilasDvvy~~~~~e-----~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFE-----GLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcch-----hHHHHHHHHHhcCCeEEE
Confidence 999985 5543333222 245567777888884433
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=80.65 E-value=18 Score=37.10 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=60.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.|-+||+| |+.+++.+++. +.+|.+.+.+++.++...+.... +..+.. ..+..++.+. -++.|+|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~---------g~~~~~-~~s~~e~v~~-l~~~dvI 67 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK---------GKKIVG-AYSIEEFVQS-LERPRKI 67 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC---------CCCcee-cCCHHHHHhh-cCCCCEE
Confidence 36788988 66777777653 57899999999998876653210 001111 1233333221 2456888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+..+ -...+.++.+...|++|- +++++.+...
T Consensus 68 il~v~~~------~~v~~Vi~~l~~~L~~g~-iIID~gns~~ 102 (467)
T TIGR00873 68 MLMVKAG------APVDAVINQLLPLLEKGD-IIIDGGNSHY 102 (467)
T ss_pred EEECCCc------HHHHHHHHHHHhhCCCCC-EEEECCCcCH
Confidence 8754332 234567778888887764 5567776553
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.5 Score=44.09 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=55.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCc-EEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV-LQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~r-v~v~~gDa~~~l~~~ 213 (345)
.++.-|.++-||.|-.+.-+... +++|++-|++|++++.-+...++... ++. ++++..||..|+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv------~~~~iei~Nmda~~Flr~e 315 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV------DPSAIEIFNMDAKDFLRQE 315 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc------chhheeeecccHHHHhhcC
Confidence 56677888999999887766653 59999999999999999998887653 455 999999999999643
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=80.34 E-value=9.8 Score=37.78 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCCCEEEEee--cccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE----cccccccc
Q 038076 140 PNGPIAIYGL--GGGTAAHLMLDLWP--SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI----GDVFSPSE 211 (345)
Q Consensus 140 ~p~~VLiIG~--G~G~~~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~----gDa~~~l~ 211 (345)
+..+|+++|+ |-|..+.++++... ..+|.++|.+++-.+.+++.++..... .+....++. .|..+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~----~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS----RGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc----cCceEEEECCCccccHHHHHH
Confidence 4468999984 35566666666542 247999999999999999975421000 000111221 12222222
Q ss_pred c--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 212 D--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 212 ~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
. ....+|+|+..... ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEEE
Confidence 1 23469988863211 24677778899988866543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.26 E-value=2.2 Score=40.59 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
..++|+++|=-.=+.....+...| .+|.+||||+.+++.-.+...--. -.+++.+.=|.|+-+.. ..++||
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g-------~~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELG-------YNNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhC-------ccchhheeehhcccChHHHHhhCC
Confidence 467899999443322222232333 799999999999987666543111 23577788898887644 468999
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
+++-|.
T Consensus 224 vfiTDP 229 (354)
T COG1568 224 VFITDP 229 (354)
T ss_pred eeecCc
Confidence 999873
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=13 Score=35.76 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-hcCCCCCCCC--CCCCCcEEEEEcccccccccCCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD-YFGLSDLEKP--TATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~-~f~~~~~~~~--~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+|.+||+| |+.++..+.+. +.+|++++.++.. +..++ .+........ .....+++. ..|. ...+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~ 73 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAF-STDP-----AALAT 73 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEe-ccCh-----hhccC
Confidence 479999999 55666666653 5689999987754 33333 1111110000 000001111 1111 12357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+|+|++-+... ...+.++.+...++++-+++
T Consensus 74 ~D~vil~vk~~-------~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 74 ADLVLVTVKSA-------ATADAAAALAGHARPGAVVV 104 (341)
T ss_pred CCEEEEEecCc-------chHHHHHHHHhhCCCCCEEE
Confidence 99999855321 23577888888887776543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=5.2 Score=36.36 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEid 173 (345)
...+|+++|+|+ |+ ++..|. ..+-.+++.+|-|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 468999999983 44 444444 4455689999998
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.22 E-value=9.6 Score=37.13 Aligned_cols=91 Identities=22% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILI-DKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
+..+||+.|+| -|..+.++++.. +.++.+++.+++-. +.+++ ++... ++. .+. +-+......
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~-~Ga~~------------vi~~~~~-~~~~~~~~~ 247 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR-LGADS------------FLVSTDP-EKMKAAIGT 247 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh-CCCcE------------EEcCCCH-HHHHhhcCC
Confidence 45688887764 344555555554 56788888776543 34333 44321 110 010 011111125
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+ |... ....++.+.+.|+++|.++.
T Consensus 248 ~D~vi-d~~g---------~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 248 MDYII-DTVS---------AVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHHhcCCcEEEE
Confidence 89887 4322 12357778889999999874
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.19 E-value=14 Score=37.47 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..++|+++|+|. |......++.. +.+|+++|+||.-...+... +. ++. +..+. -+..|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~-G~-------------~v~--~l~ea----l~~aD 269 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD-GF-------------RVM--TMEEA----AELGD 269 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc-CC-------------Eec--CHHHH----HhCCC
Confidence 578899999983 33333333433 56999999999776554432 21 111 11122 23689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHH-HHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWL-KLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~-~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||.-. . +...+. ...+.+++|+++ +|....+.
T Consensus 270 VVI~aT-G---------~~~vI~~~~~~~mK~Gail-iNvG~~d~ 303 (425)
T PRK05476 270 IFVTAT-G---------NKDVITAEHMEAMKDGAIL-ANIGHFDN 303 (425)
T ss_pred EEEECC-C---------CHHHHHHHHHhcCCCCCEE-EEcCCCCC
Confidence 887521 1 123444 455677887765 57776654
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.16 E-value=8 Score=35.15 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHH----------HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEI----------LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~----------vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+...|.++=-|+|..++.+..+. |...|+.+-.++. +-.++++-. ..+++++-.+-.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----------~aN~e~~~~~~~ 115 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----------YANVEVIGKPLV 115 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----------hhhhhhhCCccc
Confidence 456789999999999999888653 4456766654332 111111111 123344433333
Q ss_pred cccccCCCcccEEEEcCCCCC---CCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEG---KVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~---~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.+. ..+..|++....+... .....-+...++..+.+.|||||++.+--+....
T Consensus 116 A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 116 ALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 332 4566676664222211 1111234567899999999999999887655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 3e-18
Identities = 37/240 (15%), Positives = 70/240 (29%), Gaps = 37/240 (15%)
Query: 83 VVTAVRSKYNDIVIV---DTPKSRMLLLDSTYNVHSIINKGI--------HKWTGSYWDE 131
+ +Y+ I + T ++ ++ S I G +W +
Sbjct: 23 IAGTYEGEYSVIELEADSYTTDGWLISINGV--PSSHIVLGQPQALEFEYMRWIATGARA 80
Query: 132 FVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK 191
F+ I G G T A D++P + E+D L R++F + +
Sbjct: 81 FIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPR 140
Query: 192 PTATGGVLQVHIGD-VFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN 250
+++ + D I+ D+F+ V + L P
Sbjct: 141 -------VKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG 193
Query: 251 GRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENF 310
G ++ NCG D+ S + + E F P G +
Sbjct: 194 GLYVANCGDHS----------------DLRGAKSELAGMMEVFEHVAVIADPPMLKGRRY 237
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 39/195 (20%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEF------VS 134
+V+ + ++ + D + ++ ++L+LD + DE+ V
Sbjct: 23 RVIASGKTPFQDYFLFESKGFGKVLILD-------------KDVQSTERDEYIYHETLVH 69
Query: 135 LPAIVPNGP--IAIYGLGGGTAAHLMLDLWPSL-KLEGWEIDEILIDKVRDYFGLSDLEK 191
+ P + I G G G +L P++ K +ID L++ + +
Sbjct: 70 PAMLTHPEPKRVLIVGGGEGATLREVLK-HPTVEKAVMVDIDGELVEVAKRHM------- 121
Query: 192 PTATGGVL-----QVHIGDVFSPSEDASGRYAGIVVDL---FSEGKVLPQLEEVATWLKL 243
P G + I D + E RY +++DL E L V + +
Sbjct: 122 PEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLV 181
Query: 244 KDRLMPNGRFMVNCG 258
K L P G + G
Sbjct: 182 KAHLNPGGVMGMQTG 196
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 100.0 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.97 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.96 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.95 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.95 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.94 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.94 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.93 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.93 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.92 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.92 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.91 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.91 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.89 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.51 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.5 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.49 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.48 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.47 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.46 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.45 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.44 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.44 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.42 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.41 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.41 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.38 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.38 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.38 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.36 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.36 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.36 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.36 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.35 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.35 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.34 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.33 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.33 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.33 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.33 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.33 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.33 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.33 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.32 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.32 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.32 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.31 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.31 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.31 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.3 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.3 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.28 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.28 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.28 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.28 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.28 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.27 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.27 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.26 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.26 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.26 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.26 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.26 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.26 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.26 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.26 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.25 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.25 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.25 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.24 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.24 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.24 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.23 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.23 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.23 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.23 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.22 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.22 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.22 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.22 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.22 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.22 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.21 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.21 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.2 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.2 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.2 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.2 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.2 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.2 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.2 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.2 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.19 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.19 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.19 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.19 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.19 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.19 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.19 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.19 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.18 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.18 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.18 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.18 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.18 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.18 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.17 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.17 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.17 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.17 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.16 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.16 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.16 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.16 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.16 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.15 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.15 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.14 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.14 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.14 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.14 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.14 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.14 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.13 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.13 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.13 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.13 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.13 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.13 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.13 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.13 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.12 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.12 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.12 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.12 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.12 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.12 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.11 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.11 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.11 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.11 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.1 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.1 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.09 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.09 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.09 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.09 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.09 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.08 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.08 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.08 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.07 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.07 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.06 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.06 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.06 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.06 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.06 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.05 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.05 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.04 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.04 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.04 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.04 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.03 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.03 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.03 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.03 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.02 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.02 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.02 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.02 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.02 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.02 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.0 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.0 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.0 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.99 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.99 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.98 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.98 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.98 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.97 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.97 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.97 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.97 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.96 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.96 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.96 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.96 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.95 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.95 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.95 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.95 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.94 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.94 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.93 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.93 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.93 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.92 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.91 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.91 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.89 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.88 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.87 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.87 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.86 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.85 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.84 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.82 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.82 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.79 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.79 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.77 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.76 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.76 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.75 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.75 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.74 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.72 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.7 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.7 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.7 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.67 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.67 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.66 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.65 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.64 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.63 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.61 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.6 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.6 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.59 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.59 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.57 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.55 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.53 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.53 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.52 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.5 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.42 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.41 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.41 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.4 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.37 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.36 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.31 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.31 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.3 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.3 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.24 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.22 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.22 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.19 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.16 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.14 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.1 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.05 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.05 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.99 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.99 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.93 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.89 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.88 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.67 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.58 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.49 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.47 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.37 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.35 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.06 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.04 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.77 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.36 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.96 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.93 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.92 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 95.82 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.75 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.69 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.67 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.56 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.51 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.38 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.31 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.19 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.17 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.99 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.98 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.92 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.91 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.74 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.55 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.49 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.46 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.29 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.22 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.12 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.11 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.08 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.07 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.04 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.02 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.02 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.94 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.86 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.83 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.83 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.81 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.81 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.79 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.68 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.68 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.67 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.67 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.58 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.38 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.36 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.03 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.02 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 92.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.98 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.95 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.93 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 92.82 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.74 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.73 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.69 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 92.65 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 92.62 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.59 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.59 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 92.45 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.45 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.36 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.25 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.18 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.18 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 92.1 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.09 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 91.92 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.9 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.46 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.41 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.36 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.14 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.07 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 91.05 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.94 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 90.87 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 90.81 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 90.77 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 90.74 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.66 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.58 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 90.5 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 90.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.4 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 90.2 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 90.18 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.12 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 89.87 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.76 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.73 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.72 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 89.67 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.51 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 89.5 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.44 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 89.39 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 89.2 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 89.04 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.85 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.82 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 88.7 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 88.63 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 88.49 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 88.41 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 88.37 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 88.3 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 88.23 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.23 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.14 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 88.09 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 88.09 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 87.97 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 87.93 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.71 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 87.67 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.53 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.37 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 87.33 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.17 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.08 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.05 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 86.88 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 86.59 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 86.4 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 86.36 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 86.34 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 86.33 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 86.31 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 86.14 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.96 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 85.7 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 85.64 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 85.55 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 85.19 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 85.18 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 85.16 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.14 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 84.74 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 84.68 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 84.63 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 84.63 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 84.29 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 84.12 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 83.95 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 83.8 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 83.4 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 83.33 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.21 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 83.17 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 83.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 82.71 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 82.62 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 82.61 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 82.59 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 82.56 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 82.53 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 82.52 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 82.47 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 82.39 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 82.06 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 81.98 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 81.91 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 81.83 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 81.67 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 81.54 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 81.46 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 81.32 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 81.14 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 80.7 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 80.58 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 80.44 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 80.43 |
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=265.21 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=172.3
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|.|+|+.. +|.|.+||.. |. . + .-++.|++.|++.|.. ++|++||+||+|+|.++++
T Consensus 28 ~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~-q~-t---e--~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~re 100 (294)
T 3o4f_A 28 DNVLYHEKTDHQDLIIFENAAFGRVMALDGVV-QT-T---E--RDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLRE 100 (294)
T ss_dssp SEEEEEEC---CCEEEEEETTTEEEEEETTEE-EE-E---T--TTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHH
T ss_pred eeEEEeccCCCceEEEEEcCCcceEEEECCch-hh-c---c--ccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHH
Confidence 379999999999999999976 7999999864 22 1 1 2246798887776643 6789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++|||||+|+++|++||.. ......++||++++++||+.|++...++||+||+|++++.+++..|+|.
T Consensus 101 vlk~~~v~~v~~VEID~~Vv~~a~~~lp~--~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~ 178 (294)
T 3o4f_A 101 VTRHKNVESITMVEIDAGVVSFCRQYLPN--HNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTS 178 (294)
T ss_dssp HHTCTTCCEEEEEESCHHHHHHHHHHCHH--HHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCC
T ss_pred HHHcCCcceEEEEcCCHHHHHHHHhcCcc--ccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCH
Confidence 99987789999999999999999999842 1112356899999999999999999999999999999988878889999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCC-CceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERN-GENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~-~~n~v~~a 314 (345)
|||+.|+++|+|||+++++..++..+ ......++++++++|+ .|..+. +|.-. +...++++
T Consensus 179 eFy~~~~~~L~p~Gv~v~q~~sp~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vPty~~g~w~f~~a 242 (294)
T 3o4f_A 179 AFYEGCKRCLNPGGIFVAQNGVCFLQ---------------QEEAIDSHRKLSHYFS-DVGFYQAAIPTYYGGIMTFAWA 242 (294)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEESSSC---------------CHHHHHHHHHHHHHCS-EEEEEEECCTTSSSSCEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEecCCcccC---------------hHHHHHHHHHHHhhCC-ceeeeeeeeccCCCcceeheeE
Confidence 99999999999999999998766542 1467889999999999 565443 45433 44557777
Q ss_pred CCCCC
Q 038076 315 GLLPD 319 (345)
Q Consensus 315 ~~~p~ 319 (345)
++.++
T Consensus 243 s~~~~ 247 (294)
T 3o4f_A 243 TDNDA 247 (294)
T ss_dssp ESCTT
T ss_pred ECCCc
Confidence 76643
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=247.49 Aligned_cols=209 Identities=17% Similarity=0.226 Sum_probs=176.2
Q ss_pred eeCCCCcEEEEEeC---CeEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc-----CCCC--CEEEEeecccHHHH
Q 038076 87 VRSKYNDIVIVDTP---KSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI-----VPNG--PIAIYGLGGGTAAH 156 (345)
Q Consensus 87 ~~s~yg~I~V~e~~---~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~-----~~p~--~VLiIG~G~G~~~~ 156 (345)
....|+..+++.+. ..|.|++|+.. |+++...+|..+++.|++.|++.+.. .+++ +||+||||+|.+++
T Consensus 27 ~~~~~~~~~~~~d~~~~~g~~L~lDG~~-Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~ 105 (317)
T 3gjy_A 27 YEGEYSVIELEADSYTTDGWLISINGVP-SSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMAR 105 (317)
T ss_dssp EECSSSEEEEEECSSSTTEEEEEETTEE-EEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHH
T ss_pred ccceeeeEEEEecCCCCceEEEEECCEe-EEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHH
Confidence 34667778888763 68999999874 78888899999999999998876643 4455 99999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLE 235 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~ 235 (345)
++++++|+.+|++|||||+|+++|+++|+... ++|++++++|+++|++.. +++||+||+|++++...+.+++
T Consensus 106 ~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-------~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~ 178 (317)
T 3gjy_A 106 YFADVYPQSRNTVVELDAELARLSREWFDIPR-------APRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFT 178 (317)
T ss_dssp HHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-------TTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGS
T ss_pred HHHHHCCCcEEEEEECCHHHHHHHHHhccccC-------CCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhh
Confidence 99998899999999999999999999998653 689999999999998653 5799999999999877778899
Q ss_pred hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEec----CCCCceEE
Q 038076 236 EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMP----ERNGENFL 311 (345)
Q Consensus 236 t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~----~~~~~n~v 311 (345)
+.+||+.++++|+|||++++|+.+... ...+++++++|+++|+ .+.++..+ ++..+|+|
T Consensus 179 t~efl~~~~r~LkpgGvlv~~~~~~~~----------------~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~V 241 (317)
T 3gjy_A 179 TVEFFEHCHRGLAPGGLYVANCGDHSD----------------LRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNII 241 (317)
T ss_dssp BHHHHHHHHHHEEEEEEEEEEEEECTT----------------CHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCcc----------------hHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEE
Confidence 999999999999999999999985432 1468899999999999 56655543 34678999
Q ss_pred EEeCCCCCc
Q 038076 312 ALTGLLPDL 320 (345)
Q Consensus 312 ~~a~~~p~~ 320 (345)
+++++.|..
T Consensus 242 l~As~~plp 250 (317)
T 3gjy_A 242 LMGSDTEFF 250 (317)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999877743
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=241.46 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=162.2
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc-CCCCCEEEEeecccHHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI-VPNGPIAIYGLGGGTAAHLML 159 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~-~~p~~VLiIG~G~G~~~~~l~ 159 (345)
++|++.+|+||+|.|+|+.. .|.|.+|+.. |.+ +.+ +.|++.|++.+.+ .+|++||+||+|+|.++++++
T Consensus 153 ~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~-Q~t----e~D---~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revl 224 (381)
T 3c6k_A 153 EVVYDEDSPYQNIKILHSKQFGNILILSGDV-NLA----ESD---LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIV 224 (381)
T ss_dssp EEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEE----TTC---HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHH
T ss_pred EEEEeCCCCCceEEEEEcCCcceEEEECCce-eee----CCh---HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHH
Confidence 69999999999999999976 7999999864 322 111 4698888766654 567999999999999999999
Q ss_pred HhCCCCEEEEEECCHHHHHHHHHhcCCCC-CCCCCCCCCcEEEEEccccccccc---CCCcccEEEEcCCCCCC------
Q 038076 160 DLWPSLKLEGWEIDEILIDKVRDYFGLSD-LEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIVVDLFSEGK------ 229 (345)
Q Consensus 160 ~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii~D~f~~~~------ 229 (345)
++ |..+|++|||||+|+++|++||.... .......++|++++++||+.|+++ ..++||+||+|++++..
T Consensus 225 kh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g 303 (381)
T 3c6k_A 225 KL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 303 (381)
T ss_dssp TT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC---
T ss_pred hc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccC
Confidence 86 45899999999999999999985321 000112457799999999999974 45789999999987532
Q ss_pred CCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE----EecCC
Q 038076 230 VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK----RMPER 305 (345)
Q Consensus 230 ~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~----~~~~~ 305 (345)
....|+++|||+.|+++|+|||+++++..+.... .....+.++++++|+ .+.+. .+|.-
T Consensus 304 ~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~----------------~~~~~i~~tl~~vF~-~v~~~~~~~~VPSy 366 (381)
T 3c6k_A 304 DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT----------------EALSLYEEQLGRLYC-PVEFSKEIVCVPSY 366 (381)
T ss_dssp -CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH----------------HHHHHHHHHHTTSSS-CEEEEEEEECCGGG
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEEecCCCcch----------------hHHHHHHHHHHHhCC-cceEeeEEEEecCC
Confidence 1235899999999999999999999886654431 356788999999999 55432 35654
Q ss_pred CCceEEEEeCCCCC
Q 038076 306 NGENFLALTGLLPD 319 (345)
Q Consensus 306 ~~~n~v~~a~~~p~ 319 (345)
.+...+.++++..+
T Consensus 367 ~~~W~F~~aSK~~~ 380 (381)
T 3c6k_A 367 LELWVFYTVWKKAK 380 (381)
T ss_dssp SSCEEEEEEEECCC
T ss_pred CCceeeeEEECCCC
Confidence 45566777776543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=221.19 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=165.0
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|+|+++.. .|.|.+|+. .|++. ...+.|.+.|..++.. .++++||+||||+|.++++
T Consensus 20 ~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~-~q~~~------~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~ 92 (275)
T 1iy9_A 20 NKTLHTEQTEFQHLEMVETEEFGNMLFLDGM-VMTSE------KDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIRE 92 (275)
T ss_dssp EEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEET------TTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHH
T ss_pred eeEEEEEECCCceEEEEEcCCCCEEEEECCE-Eeecc------cchhHHHHHHHHHHHhhCCCCCEEEEECCchHHHHHH
Confidence 469999999999999999865 699999975 23321 1245688776655432 4678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++|||||+++++|+++|..... ...++|++++++|+++++...+++||+|++|.+++...+.++++.
T Consensus 93 l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~---~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~ 169 (275)
T 1iy9_A 93 ILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG---KLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTK 169 (275)
T ss_dssp HTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT---TTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTT
T ss_pred HHhCCCCceEEEEECCHHHHHHHHHHhHhhcc---ccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHH
Confidence 99876778999999999999999999831000 013689999999999998776789999999998866666788999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCC-CCceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPER-NGENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~-~~~n~v~~a 314 (345)
+|++.++++|+|||++++|..++..+ ....+.+.++++++|+ .+..+. +|.- .+.+.++++
T Consensus 170 ~~~~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vp~~~~g~w~~~~a 233 (275)
T 1iy9_A 170 GFYAGIAKALKEDGIFVAQTDNPWFT---------------PELITNVQRDVKEIFP-ITKLYTANIPTYPSGLWTFTIG 233 (275)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHTTCS-EEEEEEECCTTSGGGCEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEcCCcccc---------------HHHHHHHHHHHHHhCC-CeEEEEEecCcccCcceEEEEe
Confidence 99999999999999999997654321 1568899999999999 565444 4442 244556677
Q ss_pred CCC
Q 038076 315 GLL 317 (345)
Q Consensus 315 ~~~ 317 (345)
++.
T Consensus 234 sk~ 236 (275)
T 1iy9_A 234 SKK 236 (275)
T ss_dssp ESS
T ss_pred eCC
Confidence 654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=210.83 Aligned_cols=209 Identities=18% Similarity=0.134 Sum_probs=160.4
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||.|.|+++.. .|.|.+|+.. |++ . ...+.|.+.+...+. ..++++||+||||+|.+++
T Consensus 19 ~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~-q~~----~--~d~~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~ 91 (281)
T 1mjf_A 19 IKKKIYEKLSKYQKIEVYETEGFGRLLALDGTV-QLV----T--LGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVR 91 (281)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCEEEEETTEE-EEE----T--TTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred eccEEEEeeCCCccEEEEECCCccEEEEECCEe-eec----c--ccchHHHHHHHHHHHhhCCCCCeEEEEcCCcCHHHH
Confidence 3469999999999999999864 5999999742 332 1 124568777664432 2567899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCC-------CCCcEEEEEcccccccccCCCcccEEEEcCCCCCC
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTA-------TGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK 229 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~-------~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~ 229 (345)
+++++ +..+|++||+||.+++.|++++.... .. .+++++++.+|+++++.. +++||+|++|.+++..
T Consensus 92 ~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~----~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~ 165 (281)
T 1mjf_A 92 EVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDN----GLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVG 165 (281)
T ss_dssp HHTTS-CCSEEEEEESCHHHHHHHHHHTCTTT----THHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-
T ss_pred HHHhC-CCCEEEEEECCHHHHHHHHHHHhhcc----ccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCC
Confidence 99987 88899999999999999999983210 01 268999999999999876 7889999999987655
Q ss_pred CCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCC
Q 038076 230 VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNG 307 (345)
Q Consensus 230 ~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~ 307 (345)
.+.++++.+|++.++++|+|||+++++..+...+ ....+.+.++++++|+ .+..+. +|...+
T Consensus 166 ~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~f~-~v~~~~~~vP~~~g 229 (281)
T 1mjf_A 166 PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLF---------------TDELISAYKEMKKVFD-RVYYYSFPVIGYAS 229 (281)
T ss_dssp ----TTSHHHHHHHHHHEEEEEEEEEEEEETTTS---------------HHHHHHHHHHHHHHCS-EEEEEEECCTTSSS
T ss_pred cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC---------------HHHHHHHHHHHHHHCC-ceEEEEEecCCCCc
Confidence 5567788999999999999999999997654321 1568889999999999 565544 455545
Q ss_pred ceEEEEeCCC
Q 038076 308 ENFLALTGLL 317 (345)
Q Consensus 308 ~n~v~~a~~~ 317 (345)
.+.++++++.
T Consensus 230 ~~~~~~as~~ 239 (281)
T 1mjf_A 230 PWAFLVGVKG 239 (281)
T ss_dssp SEEEEEEEES
T ss_pred eEEEEEeeCC
Confidence 6667777654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=209.23 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=162.6
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|++++. .|.|.+|+.. |++ . .....|.+.+..++.+ .++++||+||||+|.++++
T Consensus 23 ~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~-q~~----~--~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~ 95 (283)
T 2i7c_A 23 KKILYETKSKYQNVLVFESTTYGKVLVLDGVI-QLT----E--KDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRE 95 (283)
T ss_dssp EEEEEEEECSSSEEEEEEESSSCEEEEETTEE-EEE----T--TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHH
T ss_pred ccEEEEEECCCccEEEEEcCCCCEEEEECCEe-eec----c--cchhhHHHHHHHHHHhcCCCCCeEEEEeCCcCHHHHH
Confidence 469999999999999999875 5899999753 222 2 2245687655555432 4678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.|..+|++||+||.+++.|++++.... ....++|++++++|+++++...+++||+|++|.+++......+++.
T Consensus 96 l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~---~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~ 172 (283)
T 2i7c_A 96 LCKYKSVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQ 172 (283)
T ss_dssp HTTCTTCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSH
T ss_pred HHHcCCCCEEEEEECCHHHHHHHHHHhHHhc---cccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHH
Confidence 9987778999999999999999999985321 0123689999999999998766789999999998765545678889
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCCCce-EEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERNGEN-FLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~~~n-~v~~a 314 (345)
+|++.++++|+|||+++++..+...+ ....+.+.++++++|+ .+..+ .+|.-.+++ .++++
T Consensus 173 ~~l~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vP~y~~g~~g~~~~ 236 (283)
T 2i7c_A 173 NFYEKIYNALKPNGYCVAQCESLWIH---------------VGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCC 236 (283)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHTTCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEECCCcccC---------------HHHHHHHHHHHHHHCC-ceEEEEEEcCCcCCCcEEEEEE
Confidence 99999999999999999997654331 1457889999999999 56544 355544455 34555
Q ss_pred CC
Q 038076 315 GL 316 (345)
Q Consensus 315 ~~ 316 (345)
++
T Consensus 237 s~ 238 (283)
T 2i7c_A 237 SK 238 (283)
T ss_dssp ES
T ss_pred eC
Confidence 43
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=213.96 Aligned_cols=212 Identities=18% Similarity=0.149 Sum_probs=164.8
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|++++. .|.|.+|+.. |++. ...+.|.+.+..++. ..++++||+||||+|.+++
T Consensus 21 ~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~-q~~~------~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~ 93 (314)
T 1uir_A 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDV-QSTE------RDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLR 93 (314)
T ss_dssp CSEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEET------TTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred cceEEEEEECCCCCEEEEEcCCCcEEEEECCEE-eeee------cchhHHHHHHHHHHHhcCCCCCeEEEEcCCcCHHHH
Confidence 4579999999999999999865 5889998743 3332 124578887765553 2567899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCC---CCCC
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG---KVLP 232 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~---~~p~ 232 (345)
+++++.+..+|++||+||.+++.|++++.. +. ....+++++++++|+++++...+++||+|++|.+.+. ..+.
T Consensus 94 ~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~---~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~ 170 (314)
T 1uir_A 94 EVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ---GAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPAR 170 (314)
T ss_dssp HHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT---TGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGG
T ss_pred HHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc---ccccCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcch
Confidence 999877788999999999999999999842 10 0012689999999999998766789999999998765 4456
Q ss_pred CcchHHHHHHHHhccCCCcEEEEEecCCC-CCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCCCce
Q 038076 233 QLEEVATWLKLKDRLMPNGRFMVNCGGID-GVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERNGEN 309 (345)
Q Consensus 233 ~l~t~ef~~~~~~~L~pgGvlvvn~~~~~-~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~~~n 309 (345)
.+++.+|++.++++|+|||++++|..+.. .+ ....+.+.++++++|+ .+..+ .+|...+.+
T Consensus 171 ~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vP~~~g~~ 234 (314)
T 1uir_A 171 LLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH---------------HRVHPVVHRTVREAFR-YVRSYKNHIPGFFLNF 234 (314)
T ss_dssp GGSSHHHHHHHHHTEEEEEEEEEEEEEECC------------------CHHHHHHHHHHTTCS-EEEEEEEEEGGGTEEE
T ss_pred hccHHHHHHHHHHhcCCCcEEEEEccCccccC---------------HHHHHHHHHHHHHHCC-ceEEEEEecCCCCCeE
Confidence 67889999999999999999999976543 21 1357889999999999 55543 356554556
Q ss_pred EEEEeCCC
Q 038076 310 FLALTGLL 317 (345)
Q Consensus 310 ~v~~a~~~ 317 (345)
.++++++.
T Consensus 235 ~~~~as~~ 242 (314)
T 1uir_A 235 GFLLASDA 242 (314)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 67777765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=209.52 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=152.7
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|++++. .|.|.+|+.. |.+ . ...+.|.+.+..++. ..++++||+||||+|.++++
T Consensus 53 ~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~-q~~----~--~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~~~~~ 125 (314)
T 2b2c_A 53 KKVLFHEKSKYQDVLVFESTTYGNVLVLDGIV-QAT----E--RDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILRE 125 (314)
T ss_dssp EEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEE----S--SSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHH
T ss_pred ccEEEEEECCCCCEEEEEcCCCCEEEEECCEe-ecC----C--cchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHH
Confidence 469999999999999999865 6899999753 221 2 124568776555443 25678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.|..+|++|||||.+++.|++++..... ...++|++++++|+++++...+++||+|++|.+++...+..+++.
T Consensus 126 l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~---~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~ 202 (314)
T 2b2c_A 126 VLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC---GFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQ 202 (314)
T ss_dssp HTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG---GGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC------------
T ss_pred HHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc---ccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHH
Confidence 99877789999999999999999999853200 013689999999999998766789999999998764445568889
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCce-EEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGEN-FLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n-~v~~a 314 (345)
+|++.++++|+|||+++++..+.-.+ ....+.+.++++++|+ .+.++. +|....++ .++++
T Consensus 203 ~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~vF~-~v~~~~~~iP~~~~g~~g~~~a 266 (314)
T 2b2c_A 203 SYYELLRDALKEDGILSSQGESVWLH---------------LPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLIC 266 (314)
T ss_dssp -HHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred HHHHHHHhhcCCCeEEEEECCCcccC---------------HHHHHHHHHHHHHHCC-cceEEEEEecCcCCCceEEEEE
Confidence 99999999999999999987543321 1457889999999999 555443 55433344 35555
Q ss_pred CCC
Q 038076 315 GLL 317 (345)
Q Consensus 315 ~~~ 317 (345)
++.
T Consensus 267 sk~ 269 (314)
T 2b2c_A 267 AKN 269 (314)
T ss_dssp ESS
T ss_pred eCC
Confidence 544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=206.09 Aligned_cols=213 Identities=16% Similarity=0.118 Sum_probs=157.4
Q ss_pred cCceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHH
Q 038076 79 ENFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAA 155 (345)
Q Consensus 79 ~~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~ 155 (345)
...+++++.+|+||+|.|+++.. .|.|.+|+.. |++ .+ ..+.|.+.+..++. ..++++||+||||+|.++
T Consensus 33 ~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~-~~~----~~--de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~ 105 (296)
T 1inl_A 33 KMNRVIYSGQSDIQRIDIFENPDLGVVFALDGIT-MTT----EK--DEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTL 105 (296)
T ss_dssp ECSEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEE----TT--THHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHH
T ss_pred ecccEEEEEECCCccEEEEEcCCCcEEEEECCEE-eec----cc--chhHHHHHHhHHHHhcCCCCCEEEEEcCCcCHHH
Confidence 34579999999999999999864 6999999752 221 21 23568776654443 246789999999999999
Q ss_pred HHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCC-CCCCCCc
Q 038076 156 HLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSE-GKVLPQL 234 (345)
Q Consensus 156 ~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~-~~~p~~l 234 (345)
+.++++.+..+|++||+||.+++.|++++..-. ....+++++++++|+++++...+++||+|++|.+++ ...+..+
T Consensus 106 ~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~---~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l 182 (296)
T 1inl_A 106 REVLKHDSVEKAILCEVDGLVIEAARKYLKQTS---CGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHL 182 (296)
T ss_dssp HHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH---GGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------C
T ss_pred HHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc---cccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhh
Confidence 999987678999999999999999999983100 001257999999999999876678899999998876 4445668
Q ss_pred chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCC-CCceEE
Q 038076 235 EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPER-NGENFL 311 (345)
Q Consensus 235 ~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~-~~~n~v 311 (345)
++.++++.++++|+|||+++++..+...+ ....+.+.++++++|+ .+..+. +|.- .+.+.+
T Consensus 183 ~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vp~~p~g~~~f 246 (296)
T 1inl_A 183 FTEEFYQACYDALKEDGVFSAETEDPFYD---------------IGWFKLAYRRISKVFP-ITRVYLGFMTTYPSGMWSY 246 (296)
T ss_dssp CSHHHHHHHHHHEEEEEEEEEECCCTTTT---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSTTSEEEE
T ss_pred hHHHHHHHHHHhcCCCcEEEEEccCcccC---------------HHHHHHHHHHHHHHCC-ceEEEEeecCccCCCceEE
Confidence 88999999999999999999997654321 1467889999999999 565544 4432 344556
Q ss_pred EEeCCC
Q 038076 312 ALTGLL 317 (345)
Q Consensus 312 ~~a~~~ 317 (345)
+++++.
T Consensus 247 ~~as~~ 252 (296)
T 1inl_A 247 TFASKG 252 (296)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 667654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=208.98 Aligned_cols=213 Identities=18% Similarity=0.217 Sum_probs=162.7
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|+++.. .|.|.+|+.. + ...++ ++.|.+.+..++. ..++++||+||||+|.+++
T Consensus 60 ~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~-~----~~~~d--e~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~ 132 (321)
T 2pt6_A 60 IKKILYETKSKYQNVLVFESTTYGKVLVLDGVI-Q----LTEKD--EFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIR 132 (321)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCEEEEETTEE-E----EETTT--HHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHH
T ss_pred cccEEEEEECCCceEEEEEcCCCcEEEEECCEe-e----eCccc--chHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHH
Confidence 3469999999999999998754 6899999853 2 12222 3567776554442 2467899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcch
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
.++++.|..+|++||+||++++.|++++.... ....+++++++++|+.+++...+++||+|++|.+++...+..+++
T Consensus 133 ~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~---~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~ 209 (321)
T 2pt6_A 133 ELCKYKSVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFN 209 (321)
T ss_dssp HHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSS
T ss_pred HHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc---cccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhH
Confidence 99987678999999999999999999986310 012368999999999999866678999999998765444456778
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceE-EEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENF-LAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~-v~~ 313 (345)
.++++.+++.|+|||+++++..+...+ ....+.+.++++++|+ .+..+. +|...++++ +++
T Consensus 210 ~~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 210 QNFYEKIYNALKPNGYCVAQCESLWIH---------------VGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECCTTTC---------------HHHHHHHHHHHHTTCS-EEEEEEEECTTSGGGEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCcccC---------------HHHHHHHHHHHHHHCC-CeEEEEEEeccccCceEEEEE
Confidence 999999999999999999987654331 1467889999999999 565443 454444455 566
Q ss_pred eCCCC
Q 038076 314 TGLLP 318 (345)
Q Consensus 314 a~~~p 318 (345)
+++.+
T Consensus 274 as~~~ 278 (321)
T 2pt6_A 274 CSKTD 278 (321)
T ss_dssp EESST
T ss_pred eeCCC
Confidence 76653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=205.37 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=152.7
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|+++.. .|.|.+|+.. |.+ + ..+..|.+.+..++. ..++++||+||||+|.++++
T Consensus 40 ~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~-~~~----~--~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~ 112 (304)
T 2o07_A 40 EQLLHHRRSRYQDILVFRSKTYGNVLVLDGVI-QCT----E--RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLRE 112 (304)
T ss_dssp EEEEEEEECSSSEEEEEEESSSCEEEEETTEE-EEE----T--TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHH
T ss_pred ccEEEEEECCCcEEEEEEcCCCceEEEECCEE-Eee----c--ccchHHHHHHHHHHHhhCCCCCEEEEECCCchHHHHH
Confidence 369999999999999999864 5999999742 222 2 224567665555443 24678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++||+||++++.|++++..... ...+++++++++|+++++...+++||+|++|.+.+...+.++++.
T Consensus 113 l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~---~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~ 189 (304)
T 2o07_A 113 VVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI---GYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKE 189 (304)
T ss_dssp HTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG---GGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------C
T ss_pred HHHcCCCCEEEEEECCHHHHHHHHHHhHHhhc---ccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHH
Confidence 99877779999999999999999999842100 012689999999999998776789999999998765444567889
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCC-CceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERN-GENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~-~~n~v~~a 314 (345)
+|++.++++|+|||+++++..+.-.+ ....+.+.++++++|+ .+.++ .+|.-. +...++++
T Consensus 190 ~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~f~-~v~~~~~~vP~~~~g~~g~~~a 253 (304)
T 2o07_A 190 SYYQLMKTALKEDGVLCCQGECQWLH---------------LDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC 253 (304)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECTTTC---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred HHHHHHHhccCCCeEEEEecCCcccc---------------hHHHHHHHHHHHHhCC-CceeEEEEeccccCcceEEEEE
Confidence 99999999999999999987554321 1457888999999999 55544 355432 23334566
Q ss_pred CCC
Q 038076 315 GLL 317 (345)
Q Consensus 315 ~~~ 317 (345)
++.
T Consensus 254 s~~ 256 (304)
T 2o07_A 254 SKN 256 (304)
T ss_dssp ESS
T ss_pred eCC
Confidence 544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=198.33 Aligned_cols=211 Identities=16% Similarity=0.138 Sum_probs=154.7
Q ss_pred CceEEEEeeCCCCcEEEEEeC---C-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTP---K-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGT 153 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~---~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~ 153 (345)
..+++++.+|+||+|.|+++. . .|.|.+|+.. |++ . .....|.+.+..++. ..++++||+||||+|.
T Consensus 36 ~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~-~~~----~--~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~ 108 (304)
T 3bwc_A 36 VEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCI-QVT----D--YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGG 108 (304)
T ss_dssp EEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEE-EEE----T--TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSH
T ss_pred cccEEEEeECCCCCEEEEEecCCCccceEEEECCee-eee----c--ccchHHHHHHhhhhhhcCCCCCeEEEEcCCCCH
Confidence 346999999999999999987 4 5899999742 222 1 123457776655443 2567899999999999
Q ss_pred HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCC
Q 038076 154 AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVL 231 (345)
Q Consensus 154 ~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p 231 (345)
+++.++++.+..+|++||+||.+++.|++++.. .. ...++|++++++|+.+++.. .+++||+|++|.+.+....
T Consensus 109 ~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~ 184 (304)
T 3bwc_A 109 VLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR----SLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPA 184 (304)
T ss_dssp HHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG----GGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC------
T ss_pred HHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc----ccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccc
Confidence 999999876778999999999999999998821 00 02368999999999999865 5789999999988765555
Q ss_pred CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCCCEEEEEe--cCCC-C
Q 038076 232 PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPGKVSWKRM--PERN-G 307 (345)
Q Consensus 232 ~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~~v~~~~~--~~~~-~ 307 (345)
..+++.+|++.+++.|+|||+++++..+...+ ....+.+.++++++ |+ .+..+.. |.-. +
T Consensus 185 ~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~GF~-~v~~~~~~vP~yp~g 248 (304)
T 3bwc_A 185 SKLFGEAFYKDVLRILKPDGICCNQGESIWLD---------------LELIEKMSRFIRETGFA-SVQYALMHVPTYPCG 248 (304)
T ss_dssp ---CCHHHHHHHHHHEEEEEEEEEEECCTTTC---------------HHHHHHHHHHHHHHTCS-EEEEEECCCTTSTTS
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEecCCcccc---------------hHHHHHHHHHHHhCCCC-cEEEEEeecccccCc
Confidence 67889999999999999999999997654321 14578899999999 99 5665543 4332 3
Q ss_pred ceEEEEeCCC
Q 038076 308 ENFLALTGLL 317 (345)
Q Consensus 308 ~n~v~~a~~~ 317 (345)
...++++++.
T Consensus 249 ~w~f~~as~~ 258 (304)
T 3bwc_A 249 SIGTLVCSKK 258 (304)
T ss_dssp CCEEEEEESS
T ss_pred ceEEEEEeCC
Confidence 3345566654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=196.33 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=150.2
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|++++. .|.|.+|+. |++. ...+.|.+.+...+.. ..+++||+||||+|.+++
T Consensus 17 ~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~--q~~~------~d~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~ 88 (262)
T 2cmg_A 17 IEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ--LLFK------NFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAH 88 (262)
T ss_dssp CSEEEEEEECSSCEEEEEEETTTEEEEEETTE--EEEG------GGTHHHHHHHHHHHHTTSSCCCEEEEESSCCHHHHH
T ss_pred EeeEEEeeECCCceEEEEECCCccEEEEEcCc--cccc------chHHHHHHHHHHHhhhcCCCCCEEEEEeCCcCHHHH
Confidence 3579999999999999999876 599999985 4431 1234677666555432 467899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcch
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
+++++ + .+|++||+||+|++.|+++|.... ....++|++++++|+++++ ++||+|++|..++
T Consensus 89 ~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~---~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~dp--------- 150 (262)
T 2cmg_A 89 QLFKY-D-THIDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEPD--------- 150 (262)
T ss_dssp HHTTS-S-CEEEEECSCHHHHGGGTTTSTTHH---HHHTCTTEEEESSGGGSCC----CCEEEEEESSCCC---------
T ss_pred HHHhC-C-CEEEEEECCHHHHHHHHHHHHhhc---cccCCCeEEEEechHHHHH----hhCCEEEECCCCh---------
Confidence 99987 7 999999999999999999885310 0013689999999999987 7899999996432
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEEEEe
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFLALT 314 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v~~a 314 (345)
..|++.+++.|+|||+++++..+...+ ....+.+.++++++|+ .+..+. +|. .+.+.++++
T Consensus 151 ~~~~~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~-~~~~~~~~vP~-~g~~~~~~a 213 (262)
T 2cmg_A 151 IHRIDGLKRMLKEDGVFISVAKHPLLE---------------HVSMQNALKNMGGVFS-VAMPFVAPLRI-LSNKGYIYA 213 (262)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEECTTTC---------------HHHHHHHHHHHHTTCS-EEEEECCTTCT-TCCEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCcccC---------------HHHHHHHHHHHHHhCC-ceEEEEEccCC-CcccEEEEe
Confidence 239999999999999999987654321 1457889999999999 555443 344 455656677
Q ss_pred CCCC
Q 038076 315 GLLP 318 (345)
Q Consensus 315 ~~~p 318 (345)
++.+
T Consensus 214 s~~~ 217 (262)
T 2cmg_A 214 SFKT 217 (262)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 7653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=194.51 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=159.2
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|.++.. .|.|.+|+.. + ... ...+.|.+.+..++.. .++++||+||||+|.+++.
T Consensus 65 ~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~-~----~~~--~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~ 137 (334)
T 1xj5_A 65 EKVLFQGKSDYQDVIVFQSATYGKVLVLDGVI-Q----LTE--RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE 137 (334)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCEEEEETTEE-E----EET--TTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHH
T ss_pred eeEEEEeecCCeEEEEEEcCCCCeEEEECCEe-e----cCc--CcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHH
Confidence 469999999999999998854 6899999853 1 112 2245687766655532 4678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCCCCcch
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
++++.|..+|++||+||.+++.|++++..... ...+++++++++|+.+++.. .+++||+|++|.+++...+..+++
T Consensus 138 la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~---gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~ 214 (334)
T 1xj5_A 138 VARHASIEQIDMCEIDKMVVDVSKQFFPDVAI---GYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFE 214 (334)
T ss_dssp HTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG---GGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGS
T ss_pred HHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc---ccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhH
Confidence 99877788999999999999999998842000 01257999999999998764 357899999998875544455778
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEE--EEecCCC-CceEEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW--KRMPERN-GENFLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~--~~~~~~~-~~n~v~~ 313 (345)
.++++.+++.|+|||+++++..+.-.+ ....+.+.++++++|++.+.. ..+|.-. +...+++
T Consensus 215 ~~~l~~~~~~LkpgG~lv~~~~~~~~~---------------~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~ 279 (334)
T 1xj5_A 215 KPFFQSVARALRPGGVVCTQAESLWLH---------------MDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML 279 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCcccc---------------HHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEE
Confidence 999999999999999999986544331 145678889999999965543 2455433 3344666
Q ss_pred eCCC
Q 038076 314 TGLL 317 (345)
Q Consensus 314 a~~~ 317 (345)
+++.
T Consensus 280 as~~ 283 (334)
T 1xj5_A 280 CSTE 283 (334)
T ss_dssp EECS
T ss_pred cccC
Confidence 6653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=131.06 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=93.3
Q ss_pred cchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 125 TGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
...|.+.+.... ..+..+||+||||+|..+.++.++.| .++++||++|.|++.|++++... ..+++++.+
T Consensus 46 e~~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~--------~~~~~~~~~ 115 (236)
T 3orh_A 46 ETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ--------THKVIPLKG 115 (236)
T ss_dssp GHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC--------SSEEEEEES
T ss_pred HHHHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC--------CCceEEEee
Confidence 344555443221 24568999999999999999987655 68999999999999999988532 468999999
Q ss_pred cccccccc-CCCcccEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEE
Q 038076 205 DVFSPSED-ASGRYAGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 205 Da~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvv 255 (345)
|+...+.. .+++||.|+.|.+.......+.. ...+++++++.|||||+|++
T Consensus 116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred hHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 99887644 56789999999876544333433 45688999999999999976
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=129.57 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=86.0
Q ss_pred CEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~I 220 (345)
+||+||||+|..+.++++..| +.+|++||+|+++++.|++++..... .+++++++.+|+.+++... +++||+|
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 899999999999999998764 79999999999999999999854321 1268999999999988664 6899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
++|.... ...++++.+.+.|+|||+++++
T Consensus 134 ~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 134 FGQVSPM-------DLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred EEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence 9986432 2357999999999999999984
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=134.67 Aligned_cols=146 Identities=11% Similarity=0.014 Sum_probs=102.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.+||+||||+|.++..++...++.+|++||+||++++.|++++.... -.+++++.+|+.++ .+++|
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g-------l~~v~~v~gDa~~l---~d~~F 189 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG-------VDGVNVITGDETVI---DGLEF 189 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT-------CCSEEEEESCGGGG---GGCCC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC-------CCCeEEEECchhhC---CCCCc
Confidence 467899999999988666555555678999999999999999999874221 15899999999986 26889
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKV 297 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v 297 (345)
|+|+++... + ...++++++.+.|+|||+++++....... .+...+.....+.|. +
T Consensus 190 DvV~~~a~~----~---d~~~~l~el~r~LkPGG~Lvv~~~~~~r~----------------~l~~~v~~~~~~gf~--~ 244 (298)
T 3fpf_A 190 DVLMVAALA----E---PKRRVFRNIHRYVDTETRIIYRTYTGMRA----------------ILYAPVSDDDITGFR--R 244 (298)
T ss_dssp SEEEECTTC----S---CHHHHHHHHHHHCCTTCEEEEEECCGGGG----------------GSSCCCCTGGGTTEE--E
T ss_pred CEEEECCCc----c---CHHHHHHHHHHHcCCCcEEEEEcCcchhh----------------hccccCChhhhhhhh--h
Confidence 999986532 1 34689999999999999999887543210 000111112334565 2
Q ss_pred EEEEecCCCCceEEEEeCCCC
Q 038076 298 SWKRMPERNGENFLALTGLLP 318 (345)
Q Consensus 298 ~~~~~~~~~~~n~v~~a~~~p 318 (345)
.....|.....|.++++.+.+
T Consensus 245 ~~~~~p~~~v~N~vv~a~k~~ 265 (298)
T 3fpf_A 245 AGVVLPSGKVNNTSVLVFKCP 265 (298)
T ss_dssp EEEECCCTTCCCEEEEEEECC
T ss_pred eeEECCCCCcCcEEEEEEccC
Confidence 333456665678787875543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=125.43 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=89.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~y 217 (345)
.++++||+||||+|..+..+++..|+.+|++||++|.+++.|++++..... .++++++.+|+.+++. ..+++|
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~f 143 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF------ENQVRIIEGNALEQFENVNDKVY 143 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC------TTTEEEEESCGGGCHHHHTTSCE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECCHHHHHHhhccCCc
Confidence 367899999999999999999877889999999999999999998853321 3589999999999876 557899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|++|.... ...++++.+.+.|+|||+++++
T Consensus 144 D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 144 DMIFIDAAKA-------QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEEEETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEcCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence 9999985322 2467999999999999999884
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=128.44 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=88.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||||+|..+..+++..| +.+|+++|+++.+++.|++++.... .+++++++.+|+.+++...
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------~~~~i~~~~gda~~~l~~l~~~~ 151 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG------VDHKIDFREGPALPVLDEMIKDE 151 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT------CGGGEEEEESCHHHHHHHHHHSG
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCCeEEEECCHHHHHHHHHhcc
Confidence 4678999999999999999998877 7899999999999999999885332 1468999999999876542
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 152 ~~~~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 152 KNHGSYDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp GGTTCBSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEE
T ss_pred CCCCCEEEEEEcCchH-------HHHHHHHHHHHhCCCCeEEEEe
Confidence 57899999986422 2367999999999999999875
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=125.33 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC--C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS--G 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~--~ 215 (345)
.++++||+||||+|..+..+++..| +.+|++||++|.+++.|++++..... .++++++.+|+.+++.... +
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~------~~~v~~~~~d~~~~l~~~~~~~ 135 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV------DQRVTLREGPALQSLESLGECP 135 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC------TTTEEEEESCHHHHHHTCCSCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEcCHHHHHHhcCCCC
Confidence 3678999999999999999998877 79999999999999999998843321 3589999999999776543 4
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++|.... ...++++.+.+.|+|||+++++-.
T Consensus 136 ~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 136 AFDLIFIDADKP-------NNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CeEEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEeCC
Confidence 899999986321 235799999999999999988633
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-13 Score=113.50 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=87.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+.+|+.+|+++|+++.+++.|++.+..... ..++ ++.+|+.+.+....++||
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~-~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV------SDRI-AVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC------TTSE-EEECCTTGGGGGCCSCCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC------CCCE-EEecchHhhhhccCCCCC
Confidence 456799999999999999999888889999999999999999998753321 3478 888999877765558999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++.... + .++++.+.+.|+|||.++++....+
T Consensus 97 ~i~~~~~~~-----~---~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 97 VIFIGGGLT-----A---PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp EEEECC-TT-----C---TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred EEEECCccc-----H---HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 999854221 1 5789999999999999998876543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=126.36 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||||+|..+.++++..| +.+|+++|+||.+++.|++++.... ..++++++.+|+.+++...
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g------~~~~i~~~~gda~~~l~~l~~~~ 142 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG------VEHKINFIESDAMLALDNLLQGQ 142 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT------CGGGEEEEESCHHHHHHHHHHST
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEEcCHHHHHHHHHhcc
Confidence 4678999999999999999998876 7999999999999999999985332 1458999999999876542
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 143 ~~~~~fD~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp TCTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCcCEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence 57899999985321 3468999999999999999884
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=123.29 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=87.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||||+|..+.++++..| +.+|+++|++|.+++.|++++.... ..++++++.+|+.+++...
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~ 130 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN------LNDRVEVRTGLALDSLQQIENEK 130 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEESCHHHHHHHHHHTT
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEEcCHHHHHHHHHhcC
Confidence 4678999999999999999998877 7899999999999999999885332 1457999999998876431
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.++||+|++|.... ...++++.+.+.|+|||+++++-.
T Consensus 131 ~~~fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 131 YEPFDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CCCCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CCCcCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 26799999986421 336899999999999999988633
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=121.83 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC---
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS--- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~--- 214 (345)
.++++||+||||+|..+..+++..+ +.+|++||++|.+++.|++++..... .++++++.+|+.+++....
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL------QDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC------GGGEEEEESCHHHHGGGTTTTS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC------CCceEEEECCHHHHHHHHHHhc
Confidence 3678999999999999999998654 78999999999999999998753221 3579999999988876544
Q ss_pred --CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 --GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 --~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++||+|++|...... ....++++.+ +.|+|||++++.-..
T Consensus 131 ~~~~fD~V~~d~~~~~~----~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRY----LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCCCSEEEECSCGGGH----HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CCCceEEEEEcCCcccc----hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 689999998633211 1223567777 999999999875443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=120.73 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++++||+||||+|..+..+++..| +.+|++||+++.+++.|++++.... ..++++++.+|+.+++...++ |
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~-f 127 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG------LIDRVELQVGDPLGIAAGQRD-I 127 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS------GGGGEEEEESCHHHHHTTCCS-E
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC------CCceEEEEEecHHHHhccCCC-C
Confidence 3578999999999999999998877 7899999999999999998874222 135799999999987765556 9
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|++|... ....++++.+.+.|+|||++++.
T Consensus 128 D~v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 128 DILFMDCDV-------FNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp EEEEEETTT-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEE
Confidence 999998432 13468999999999999999874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=115.40 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=88.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+..|..+|+++|++|.+++.|++.+.... -++++++.+|+.+.+.. .++||
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~-~~~~D 110 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-------ARNVTLVEAFAPEGLDD-LPDPD 110 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-------CTTEEEEECCTTTTCTT-SCCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeCChhhhhhc-CCCCC
Confidence 45679999999999999999998888999999999999999998874221 25799999999887643 36799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|+++.... ...++++.+.+.|+|||.+++....
T Consensus 111 ~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 111 RVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp EEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred EEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999875332 3468999999999999999987654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=129.11 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=88.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||||+|..+.++++..| +.+|++||++|.+++.|++++.... ..++++++.+|+.+++...
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g------~~~~i~~~~gda~~~l~~~~~~~ 132 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK------QEHKIKLRLGPALDTLHSLLNEG 132 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT------CTTTEEEEESCHHHHHHHHHHHH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEEcCHHHHHHHHhhcc
Confidence 4678999999999999999998775 7899999999999999999885332 1468999999999987643
Q ss_pred -CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 -SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 -~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+|++|... -...++++.+.+.|+|||++++.
T Consensus 133 ~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 133 GEHQFDFIFIDADK-------TNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp CSSCEEEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEeEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEE
Confidence 5789999998642 13457899999999999999985
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=121.37 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC---
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS--- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~--- 214 (345)
.++++||+||||+|..+..+++..| +.+|+++|+++.+++.|++++..... .++++++++|+.+++....
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~ 136 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL------SDKIGLRLSPAKDTLAELIHAG 136 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEESCHHHHHHHHHTTT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCceEEEeCCHHHHHHHhhhcc
Confidence 3678999999999999999998877 79999999999999999998853321 4579999999988765422
Q ss_pred --CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 --GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 --~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||+|++|... -...++++.+.+.|+|||++++.-.
T Consensus 137 ~~~~fD~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 137 QAWQYDLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CCCCccEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 789999998632 1346799999999999999988633
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=118.68 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=87.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC---CCCCCCCCCCCcEEEEEcccccccc----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL---SDLEKPTATGGVLQVHIGDVFSPSE---- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~---~~~~~~~~~~~rv~v~~gDa~~~l~---- 211 (345)
.+..+||+||||+|.++..+.+..|+.+|++||++|.+++.|++++.. ... ..+++++.+|..++..
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l------~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF------SARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT------GGGEEEEECCTTCCHHHHHH
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC------cceEEEEeCCHHHHhhhhhh
Confidence 456799999999999999999988889999999999999999999865 332 3579999999998743
Q ss_pred --cCCCcccEEEEcCCCCCC-----------C---CCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 212 --DASGRYAGIVVDLFSEGK-----------V---LPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 212 --~~~~~yD~Ii~D~f~~~~-----------~---p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
-.+++||+|+++..-... . .......++++.+.+.|+|||.+++-.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 135789999997322110 0 001124678999999999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=111.01 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=99.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+.+. +.+++++|++|.+++.|++.+..... .+.+++++.+|+.+.+. +++||
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~D 121 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDLYENVK--DRKYN 121 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECSTTTTCT--TSCEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECchhcccc--cCCce
Confidence 46679999999999999998876 78999999999999999998743221 12259999999988653 57899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
+|+++..-.. ..-...++++.+.+.|+|||.+++....... ...+.+.+++.|. .+.
T Consensus 122 ~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------------------~~~~~~~l~~~~~-~~~ 178 (194)
T 1dus_A 122 KIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-------------------AKSLAKYMKDVFG-NVE 178 (194)
T ss_dssp EEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-------------------HHHHHHHHHHHHS-CCE
T ss_pred EEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-------------------hHHHHHHHHHHhc-ceE
Confidence 9998642211 0113357899999999999999998875542 4457777888887 555
Q ss_pred EEE
Q 038076 299 WKR 301 (345)
Q Consensus 299 ~~~ 301 (345)
+..
T Consensus 179 ~~~ 181 (194)
T 1dus_A 179 TVT 181 (194)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.4e-12 Score=111.92 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=103.5
Q ss_pred cCCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||++||| +|.++..+.+.. +.+|+++|+|+.+++.|+++..... .+++++.+|+..+..-.+++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--------~~v~~~~~d~~~~~~~~~~~ 123 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN--------SNVRLVKSNGGIIKGVVEGT 123 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT--------CCCEEEECSSCSSTTTCCSC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC--------CCcEEEeCCchhhhhcccCc
Confidence 3567899999999 999999998865 6899999999999999999875332 27999999986543334589
Q ss_pred ccEEEEcCCCCCCCC---------------CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHH
Q 038076 217 YAGIVVDLFSEGKVL---------------PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWM 281 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p---------------~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~ 281 (345)
||+|+++..-..... ......++++.+.+.|+|||.+++.+.... ..
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------~~ 185 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------KL 185 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------HH
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------hH
Confidence 999999743211000 001126899999999999999998765432 23
Q ss_pred HHHHHHHHHHHCCCCEEEEEecCC-CCceEEEEeCCC
Q 038076 282 HNSAIRALSEAFPGKVSWKRMPER-NGENFLALTGLL 317 (345)
Q Consensus 282 ~~~~~~~l~~~F~~~v~~~~~~~~-~~~n~v~~a~~~ 317 (345)
...+.+.+++..- .+...+...+ .-..++.+..+.
T Consensus 186 ~~~~~~~l~~~g~-~~~~~~~~~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 186 LNVIKERGIKLGY-SVKDIKFKVGTRWRHSLIFFKGI 221 (230)
T ss_dssp HHHHHHHHHHTTC-EEEEEEECCCC-CEEEEEEECCC
T ss_pred HHHHHHHHHHcCC-ceEEEEecCCCeEEEEEEEeccc
Confidence 4566666776632 3443344333 223345555443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=114.51 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=88.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD 218 (345)
+..+||+||||+|.++..+.+..|+.++++||+++.+++.|+++..... -++++++.+|+.++.. -.+++||
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-------VPNIKLLWVDGSDLTDYFEDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-------CSSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC-------CCCEEEEeCCHHHHHhhcCCCCCC
Confidence 4678999999999999999999999999999999999999998874221 2579999999998532 2457899
Q ss_pred EEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++..++..- +..+...++++.+.+.|+|||++++...
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 999985433210 1113457899999999999999988653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=111.64 Aligned_cols=118 Identities=9% Similarity=0.021 Sum_probs=91.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+++.. |..+++++|+++.+++.|++.+.... ..++++++.+|+.++....+++|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN------LIDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT------CGGGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCCeEEEECCHHHHhhhccCCc
Confidence 456799999999999999998874 56799999999999999999875322 13689999999988765556899
Q ss_pred cEEEEcCCC-CCC---C-CCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFS-EGK---V-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~-~~~---~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|+++... +.. . ...-...++++.+.+.|+|||.+++..+....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 144 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGD 144 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTT
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCC
Confidence 999998522 100 0 01112357999999999999999988765443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=118.88 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+++.. ++.+|++||++|.|++.|++++.... ...+++++++|+.++ +.+.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~------~~~~v~~~~~D~~~~---~~~~ 139 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK------APTPVDVIEGDIRDI---AIEN 139 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC------CSSCEEEEESCTTTC---CCCS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc------cCceEEEeecccccc---cccc
Confidence 566899999999999999998864 56899999999999999999874322 246899999999885 3467
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|++-..- ..+++ ....++++++++.|+|||++++.-
T Consensus 140 ~d~v~~~~~l-~~~~~-~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 140 ASMVVLNFTL-QFLEP-SERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEEEEEESCG-GGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceeeeee-eecCc-hhHhHHHHHHHHHcCCCcEEEEEe
Confidence 9999874311 11221 123468999999999999988753
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=112.69 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|..+..+.+. +.+|++||++|.+++.|++.+.... -++++++.+|........+++||
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG-------IENTELILDGHENLDHYVREPIR 91 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEEESCGGGGGGTCCSCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEeCcHHHHHhhccCCcC
Confidence 46789999999999999999876 7899999999999999999874221 25799999887774333467899
Q ss_pred EEEEcC-CCCCC---CC-CCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDL-FSEGK---VL-PQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~-f~~~~---~p-~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|+++. +-+.. .. ..-...++++.+.+.|+|||.+++.++....
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 140 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD 140 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence 999874 21110 00 1123457889999999999999988775543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=118.16 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=88.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~ 216 (345)
.++.+||+||||+|..+..+.+..|+.+|+++|+++.+++.|++++.... ..++++++.+|+.+++... +++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~ 126 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG------LESRIELLFGDALQLGEKLELYPL 126 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT------CTTTEEEECSCGGGSHHHHTTSCC
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEECCHHHHHHhcccCCC
Confidence 35789999999999999999998888999999999999999999874322 1357999999999876543 578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 127 fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 127 FDVLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EEEEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEE
Confidence 99999976432 3468999999999999999986
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-13 Score=114.19 Aligned_cols=112 Identities=13% Similarity=-0.021 Sum_probs=88.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+..+.+. +..+|+++|+|+.+++.|++++..... .++++++.+|+.+++...+++||
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 102 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKA------ENRFTLLKMEAERAIDCLTGRFD 102 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTC------GGGEEEECSCHHHHHHHBCSCEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEEECcHHHhHHhhcCCCC
Confidence 45789999999999999998876 667999999999999999998854321 35799999999997665567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~~~~ 262 (345)
+|++|..-. .....++++.+. +.|+|||++++.+.....
T Consensus 103 ~i~~~~~~~-----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 103 LVFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp EEEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EEEECCCCC-----cchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 999973210 112356777776 899999999998876554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-12 Score=112.83 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=87.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..|+.+++++|+++.+++.|++.+.. .++++++.+|+.+... .++||
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~~d~~~~~~--~~~fD 111 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---------NLKVKYIEADYSKYDF--EEKYD 111 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS---------CTTEEEEESCTTTCCC--CSCEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc---------CCCEEEEeCchhccCC--CCCce
Confidence 467899999999999999999998899999999999999999998752 2389999999988643 38999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .. +.....++++++++.|+|||.+++......
T Consensus 112 ~v~~~~~l~-~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 112 MVVSALSIH-HL-EDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp EEEEESCGG-GS-CHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EEEEeCccc-cC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 999853111 11 111223589999999999999998765443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=118.92 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---S 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~ 214 (345)
.++++||+||||+|..+..+++..| +.+|+++|++|.+++.|++++.... ..++++++.+|+.+.+... .
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------~~~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE------AEHKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT------CTTTEEEEESCHHHHHHHHHHTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC------CCCeEEEEEcCHHHHHHHHHhcC
Confidence 4678999999999999999998766 6899999999999999999885322 1368999999998876432 1
Q ss_pred --CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 215 --GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 215 --~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 142 ~~~~~D~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 142 EAGTFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp CTTCEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEE
Confidence 7899999986421 2367999999999999999874
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=116.81 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=89.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~y 217 (345)
+..+||+||||+|.++..+.+..|+.+|++||+++.+++.|+++..... -++++++.+|+.+++.. .+++|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-------l~nv~~~~~Da~~~l~~~~~~~~~ 106 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-------LSNLRVMCHDAVEVLHKMIPDNSL 106 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-------CSSEEEECSCHHHHHHHHSCTTCE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-------CCcEEEEECCHHHHHHHHcCCCCh
Confidence 4578999999999999999999999999999999999999998864222 24699999999997652 57899
Q ss_pred cEEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|++...++..- ...+...++++.+.+.|+|||++.+.+.
T Consensus 107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999864443211 1123456799999999999999987654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=110.70 Aligned_cols=113 Identities=10% Similarity=-0.085 Sum_probs=87.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.++.+||++|||+|.++..+++. +..+|++||+|+.+++.|++++.... -++++++++|+.+++.. .+++|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~f 114 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALG-------LSGATLRRGAVAAVVAAGTTSPV 114 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHT-------CSCEEEEESCHHHHHHHCCSSCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC-------CCceEEEEccHHHHHhhccCCCc
Confidence 35689999999999999987764 56799999999999999999874322 25799999999998653 36899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|..-.. ..-...++++.+.+ .|+|||++++.......
T Consensus 115 D~i~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 115 DLVLADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp SEEEECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred cEEEECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 99999743211 00124578888988 99999999998765543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=116.02 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=85.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
++.+||++|||+|.++..+.+..+. +|++||++|.+++.|++++..... ..+++++.+|+.++... ..++||
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~------~~~v~~~~~D~~~~~~~~~~~~fD 121 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL------EDQIEIIEYDLKKITDLIPKERAD 121 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC------TTTEEEECSCGGGGGGTSCTTCEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC------cccEEEEECcHHHhhhhhccCCcc
Confidence 5789999999999999999887554 999999999999999998864432 45899999999998653 368999
Q ss_pred EEEEcCCCC-C---CCCC------------CcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSE-G---KVLP------------QLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~-~---~~p~------------~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++|..-. . .... ...-.++++.+.+.|+|||.+++-.
T Consensus 122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 999974321 0 0000 0112468999999999999999843
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=116.63 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||+|.++..+++. .|..+++++|++|.+++.|++++..... ..+++++.+|+.+.+ .+++|
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~--~~~~~ 163 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF------DDRVTIKLKDIYEGI--EEENV 163 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC------TTTEEEECSCGGGCC--CCCSE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC------CCceEEEECchhhcc--CCCCc
Confidence 46779999999999999999988 7789999999999999999998742221 346999999999875 35679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++|..+. .++++.+.+.|+|||.+++....
T Consensus 164 D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 164 DHVILDLPQP---------ERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp EEEEECSSCG---------GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CEEEECCCCH---------HHHHHHHHHHcCCCCEEEEEECC
Confidence 9999975332 36799999999999999987654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=114.41 Aligned_cols=104 Identities=11% Similarity=-0.043 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.++.+||+||||+|..+..+....|+.+|++||+++.+++.|++...... -++++++++|+.++... ..++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~ 141 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-------LENTTFCHDRAETFGQRKDVRES 141 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-------CSSEEEEESCHHHHTTCTTTTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCEEEEeccHHHhcccccccCC
Confidence 35689999999999999998877788999999999999999998764221 23599999999886421 2578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|+++... .-.++++.+.+.|+|||.+++..
T Consensus 142 fD~V~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 142 YDIVTARAVA--------RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEEEEECCS--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccEEEEeccC--------CHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999997632 13679999999999999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=112.75 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=87.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD 218 (345)
+..+||+||||+|.++..+++.+|+.++++||+++.+++.|++...... -++++++.+|+.++.. -.+..||
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~-------~~nv~~~~~d~~~l~~~~~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-------AQNVKLLNIDADTLTDVFEPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-------CSSEEEECCCGGGHHHHCCTTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC-------CCCEEEEeCCHHHHHhhcCcCCcC
Confidence 4578999999999999999998899999999999999999998764222 2469999999988422 2457899
Q ss_pred EEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.|++...++... ...+...++++.+.+.|+|||.+++...
T Consensus 111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 999865443211 1123457899999999999999988653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=117.13 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=83.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||+||||+|..+..+.+. +..+|++||+++.+++.|+++.... .++++++.+|+.+.+.. .+++|
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~f 129 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQ--------THKVIPLKGLWEDVAPTLPDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGC--------SSEEEEEESCHHHHGGGSCTTCE
T ss_pred CCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhc--------CCCeEEEecCHHHhhcccCCCce
Confidence 35679999999999999998754 3459999999999999999987522 36899999999986432 45789
Q ss_pred cEEEEcCCCCCCCC-CCcc-hHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVL-PQLE-EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p-~~l~-t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|++|.+.. ..+ .+.. ...+++++++.|+|||++++
T Consensus 130 D~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 130 DGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp EEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred EEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 9999986653 211 1222 23568999999999999885
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-13 Score=115.85 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=71.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.++.+||++|||+|.++..+.+..|+.+++++|+|+.+++.|++++.... .+++++.+|+.+.+.. ..+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG--------AVVDWAAADGIEWLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC--------CceEEEEcchHhhhhhhhhccC
Confidence 56789999999999999999999888999999999999999999875332 2789999999986543 348
Q ss_pred cccEEEEcCCCCCC-----CCCCcc-----------------hHHHHHHHHhccCCCcE-EEEEec
Q 038076 216 RYAGIVVDLFSEGK-----VLPQLE-----------------EVATWLKLKDRLMPNGR-FMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~-----~p~~l~-----------------t~ef~~~~~~~L~pgGv-lvvn~~ 258 (345)
+||+|++|..-... .+.... -.++++.+++.|+|||. +++.+.
T Consensus 101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 99999997532110 011110 06788999999999999 665554
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-12 Score=111.01 Aligned_cols=115 Identities=13% Similarity=0.012 Sum_probs=85.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+..+..++++||+++.+++.|++.+...... ....++++++.+|+.. +....++||
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~-~~~~~~~fD 104 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLP--RNQWERLQLIQGALTY-QDKRFHGYD 104 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCC--HHHHTTEEEEECCTTS-CCGGGCSCS
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCC--cccCcceEEEeCCccc-ccccCCCcC
Confidence 4678999999999999999998777789999999999999999988643210 0012389999999854 333457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++...-. .++. -...++++.+++.|+|||++++...
T Consensus 105 ~v~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 105 AATVIEVIE-HLDL-SRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EEEEESCGG-GCCH-HHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EEeeHHHHH-cCCH-HHHHHHHHHHHHHcCCCEEEEEccC
Confidence 999742111 1111 1125789999999999998876543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=110.28 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+++. +.+|++||++|++++.|++....... ..+++++.+|+.+.+.. .++||
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~------~~~v~~~~~d~~~~~~~-~~~~D 124 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL------SPRMRAVQGTAPAALAD-LPLPE 124 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEESCTTGGGTT-SCCCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC------CCCEEEEeCchhhhccc-CCCCC
Confidence 45678999999999999999886 78999999999999999988642221 23799999999996643 35799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++... ... +++.+.+.|+|||.+++.....+
T Consensus 125 ~v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 125 AVFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp EEEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred EEEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcc
Confidence 99986411 223 99999999999999998877543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-12 Score=115.22 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=88.7
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
++.+.++.+||+||||+|..+..+.+. +..+|++||++|.+++.|++.+.... ..++++++.+|+.+. ...+
T Consensus 41 l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~-~~~~ 112 (267)
T 3kkz_A 41 IDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG------LQNRVTGIVGSMDDL-PFRN 112 (267)
T ss_dssp CCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEECCTTSC-CCCT
T ss_pred cccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC------CCcCcEEEEcChhhC-CCCC
Confidence 333456789999999999999999987 77899999999999999998874322 146799999999875 3346
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++||+|++...- .++...++++.+++.|+|||.+++....
T Consensus 113 ~~fD~i~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 113 EELDLIWSEGAI-----YNIGFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp TCEEEEEESSCG-----GGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CCEEEEEEcCCc-----eecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence 899999984321 2223578999999999999999887543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=113.08 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=87.9
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
++.+.++.+||+||||+|..+..+.+..+. +|++||+++.+++.|++.+.... ..++++++.+|+.+. ...+
T Consensus 41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~-~~~~ 112 (257)
T 3f4k_A 41 INELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKAN------CADRVKGITGSMDNL-PFQN 112 (257)
T ss_dssp SCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEECCTTSC-SSCT
T ss_pred HhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcC------CCCceEEEECChhhC-CCCC
Confidence 334456679999999999999999988764 99999999999999998874322 145799999999765 3346
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||+|++...- .++...++++.+++.|+|||.+++...
T Consensus 113 ~~fD~v~~~~~l-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 113 EELDLIWSEGAI-----YNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TCEEEEEEESCS-----CCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEecChH-----hhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 899999986322 122356899999999999999988753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=116.13 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=88.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+.++ .+|+++|+++.+++.|++.+...+. ..+++++.+|+.++ +++||
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~----~~~fD 139 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS------PRRKEVRIQGWEEF----DEPVD 139 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC------SSCEEEEECCGGGC----CCCCS
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECCHHHc----CCCcc
Confidence 4567999999999999999998766 8999999999999999998743221 35899999999886 68999
Q ss_pred EEEEcCCCCCCCCC------CcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLP------QLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++...-. .++. .-.-.++++++++.|+|||.+++.......
T Consensus 140 ~v~~~~~~~-~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 140 RIVSLGAFE-HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp EEEEESCGG-GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred EEEEcchHH-hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 999853211 1211 123368999999999999999998776553
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=108.05 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~ 215 (345)
.+..+||++|||+|.++..+.+.. |..+|+++|+++.+++.+++.... .++++++.+|+.+.. ...++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE---------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS---------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc---------cCCCEEEEccCCCcchhhcccC
Confidence 456789999999999999999774 568999999999999999887752 257999999998742 22356
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+||+|++|... ......+++.+.+.|+|||.+++.+
T Consensus 143 ~~D~v~~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 143 KVDVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CEEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECCCC------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999998642 1123456999999999999988874
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=119.07 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=86.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---S 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~ 214 (345)
.++++||+||||+|..+.++++..| +.+|+++|++|.+++.|++++.... ..++++++.+|+.+++... +
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g------~~~~i~~~~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG------VAEKISLRLGPALATLEQLTQGK 144 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT------CGGGEEEEESCHHHHHHHHHTSS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEEcCHHHHHHHHHhcC
Confidence 3578999999999999999998776 6899999999999999999874222 1357999999998876431 2
Q ss_pred --CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 --GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 --~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||+|++|.... ...++++.+.+.|+|||++++.-.
T Consensus 145 ~~~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 145 PLPEFDLIFIDADKR-------NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp SCCCEEEEEECSCGG-------GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CCCCcCEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999986421 236799999999999999998643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=111.58 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+..|..++++||+++.+++.|++.+...... ....++++++.+|+.. +....++||
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~-~~~~~~~fD 104 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP--EMQRKRISLFQSSLVY-RDKRFSGYD 104 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSC--HHHHTTEEEEECCSSS-CCGGGTTCS
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccc--cccCcceEEEeCcccc-cccccCCCC
Confidence 4678999999999999999998777789999999999999999987532210 0011389999999844 333467999
Q ss_pred EEEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++... ..++.. .++++++++.|+|||+++....
T Consensus 105 ~V~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 105 AATVIEV-----IEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp EEEEESC-----GGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EEEEHHH-----HHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 9997421 122222 4799999999999998776543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=115.89 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++.+||+||||+|..+..+++..| +.+|++||++|.+++.|++++.... ..++++++.+|+.+++...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------~~~~v~~~~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG------LENKIFLKLGSALETLQVLIDSK 132 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT------CGGGEEEEESCHHHHHHHHHHCS
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCCEEEEECCHHHHHHHHHhhc
Confidence 4678999999999999999998876 6899999999999999999874322 1357999999998865421
Q ss_pred -----------C-CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 214 -----------S-GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 214 -----------~-~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+ ++||+|++|.... ...++++.+.+.|+|||++++..
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 7899999984221 23478999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=108.91 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=77.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~ 216 (345)
.+..+||+||||+|..+..+.+..+..+|++||++|.+++.+.+... . .+++.++.+|+..... ...++
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~--~-------~~~v~~~~~d~~~~~~~~~~~~~ 126 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR--E-------RNNIIPLLFDASKPWKYSGIVEK 126 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH--H-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh--c-------CCCeEEEEcCCCCchhhcccccc
Confidence 45678999999999999999987766799999999987654443221 0 1358888999987411 12478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|++|... +.....+++++++.|+|||.+++.+
T Consensus 127 fD~V~~~~~~------~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 127 VDLIYQDIAQ------KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeccC------hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999998422 1223346899999999999999885
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-11 Score=107.10 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=83.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~ 216 (345)
.+..+||+||||+|.++..+++..+..+|++||+++.+++.|++.... .++++++.+|+.+... ...++
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~---------~~~v~~~~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE---------RENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT---------CTTEEEEECCTTCGGGGTTTSCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc---------CCCeEEEECCCCCcccccccCcc
Confidence 456789999999999999999887778999999999999999988642 2679999999987211 12378
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
||+|++|.... -....+++.+.+.|+|||.+++.
T Consensus 144 ~D~v~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYEDVAQP------NQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEEecCCh------hHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999765321 23467899999999999999886
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-11 Score=107.21 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=107.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~ 215 (345)
.+..+||+||||+|+++..+.+. -|..+|++||++|.+++.+++...- .+++..+.+|++..-. ...+
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~---------~~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD---------RRNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT---------CTTEEEEESCTTCGGGGTTTCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh---------hcCeeEEEEeccCccccccccc
Confidence 56789999999999999999986 4779999999999999999987641 4689999999987532 2457
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
.+|+|++|...++ ....++.++++.|||||.+++.+.....+.... ....+++..+.|++. |.
T Consensus 147 ~vDvVf~d~~~~~------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p----------~~~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 147 GVDGLYADVAQPE------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE----------PSEVYKREIKTLMDGGLE 210 (233)
T ss_dssp CEEEEEECCCCTT------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTC----------CCHHHHHHHHHHHHTTCC
T ss_pred eEEEEEEeccCCh------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCC----------hHHHHHHHHHHHHHCCCE
Confidence 8999999864432 346789999999999999988654333210000 014567777888765 66
Q ss_pred CCEEEEEecCCCCceEEEEeC
Q 038076 295 GKVSWKRMPERNGENFLALTG 315 (345)
Q Consensus 295 ~~v~~~~~~~~~~~n~v~~a~ 315 (345)
.+....+..-..+..++++.
T Consensus 211 -l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 211 -IKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp -EEEEEECTTTSTTEEEEEEC
T ss_pred -EEEEEccCCCCCceEEEEEE
Confidence 44444443322344555543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-12 Score=113.75 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=86.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCCCCCCCCCcEEEEEcccccccc--cCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIGDVFSPSE--DASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~ 216 (345)
+..+||+||||+|.++..+++.+|+..+++||+++.+++.|++.... .... ....++++++.+|+.+++. -.+++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~--~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP--AGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST--TCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH--hcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 45689999999999999999888999999999999999999876421 0000 0013579999999998654 24678
Q ss_pred ccEEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||.|++...++..- -..+...++++.+.+.|+|||.+++...
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99999854433211 0113346899999999999999987654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=118.38 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=87.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+..|+.+|++||+|+.+++.|++++..... ....+++++.+|+.+.+ .+++||+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl----~~~~~v~~~~~D~~~~~--~~~~fD~ 295 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP----EALDRCEFMINNALSGV--EPFRFNA 295 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG----GGGGGEEEEECSTTTTC--CTTCEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC----CcCceEEEEechhhccC--CCCCeeE
Confidence 44799999999999999999999999999999999999999988743221 01236889999999865 3578999
Q ss_pred EEEcCCCCCC-CCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGK-VLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~-~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++..-... ....-...++++.+++.|+|||.+++-+..
T Consensus 296 Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 296 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 9997533211 111223457999999999999999986543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=107.89 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=85.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. ++.+++++|+++.+++.|++.+.... ..++++++.+|+.+. ...+++||+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~-~~~~~~~D~ 114 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN------LNDRIQIVQGDVHNI-PIEDNYADL 114 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEECBTTBC-SSCTTCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc------ccCceEEEEcCHHHC-CCCcccccE
Confidence 3459999999999999999987 77899999999999999999874322 146899999999884 335689999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++...-. .. -...++++++++.|+|||.+++...
T Consensus 115 v~~~~~l~-~~---~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 115 IVSRGSVF-FW---EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp EEEESCGG-GC---SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEECchHh-hc---cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 99853221 11 1236799999999999999988643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=114.61 Aligned_cols=126 Identities=9% Similarity=-0.091 Sum_probs=99.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||++|||+|.++..+++..+..+|++||++|.+++.|+++..... -++++++.+|+.++ .. .++|
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~-------l~~~~~~~~d~~~~-~~-~~~~ 187 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK-------LNNVIPILADNRDV-EL-KDVA 187 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT-------CSSEEEEESCGGGC-CC-TTCE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCEEEEECChHHc-Cc-cCCc
Confidence 356789999999999999999988777899999999999999999875433 24688999999998 44 6789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
|+|++|... ...+++..+.+.|+|||++++.+...... . .......++.+.+.+.
T Consensus 188 D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~---~-----------~~~~~~~~~~~~~~~~ 242 (272)
T 3a27_A 188 DRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETVAEKI---M-----------YERPIERLKFYAEKNG 242 (272)
T ss_dssp EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG---T-----------TTHHHHHHHHHHHHTT
T ss_pred eEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcCcccc---c-----------cccHHHHHHHHHHHhC
Confidence 999998532 23468899999999999999888765331 0 0235566777777664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=109.72 Aligned_cols=107 Identities=11% Similarity=0.012 Sum_probs=84.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. ..+++++|+++.+++.|++.+.. .++++++.+|+.++. .+++||
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~~d~~~~~--~~~~fD 116 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKR---------WSHISWAATDILQFS--TAELFD 116 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTT---------CSSEEEEECCTTTCC--CSCCEE
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhccc---------CCCeEEEEcchhhCC--CCCCcc
Confidence 45679999999999999999876 36999999999999999998752 348999999999875 578999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. +++..-.-.++++.+++.|+|||.+++....
T Consensus 117 ~v~~~~~l~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLY-YLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGG-GSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHH-hCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999852111 1221111247799999999999999986643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=109.55 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=86.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.++.+||++|||+|..+..+.+ .+..+|++||+||.+++.|++++..... .++++++.+|+.+++.. ..+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~ 115 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKE------PEKFEVRKMDANRALEQFYEEKL 115 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTC------GGGEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCC------CcceEEEECcHHHHHHHHHhcCC
Confidence 4568999999999999998877 4568999999999999999988743221 35799999999987542 267
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHH--HhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKL--KDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~--~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+|++|..-. .....+.++.+ .+.|+|||++++.......
T Consensus 116 ~fD~i~~~~~~~-----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 116 QFDLVLLDPPYA-----KQEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp CEEEEEECCCGG-----GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred CCCEEEECCCCC-----chhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 899999974311 11335667777 8889999999988776554
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-12 Score=114.36 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=80.7
Q ss_pred CCCCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~ 213 (345)
++.+||+||||+|..+..+++. .|+.+|++||++|.+++.|+.. .++++++++|+.+. +...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~------------~~~v~~~~gD~~~~~~l~~~ 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------------MENITLHQGDCSDLTTFEHL 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG------------CTTEEEEECCSSCSGGGGGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc------------CCceEEEECcchhHHHHHhh
Confidence 5689999999999999999886 6789999999999999988721 35799999999986 4332
Q ss_pred C-CcccEEEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEe
Q 038076 214 S-GRYAGIVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNC 257 (345)
Q Consensus 214 ~-~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~ 257 (345)
. .+||+|++|... ....+++.++.+ .|+|||++++.-
T Consensus 149 ~~~~fD~I~~d~~~-------~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 149 REMAHPLIFIDNAH-------ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSSCSSEEEEESSC-------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ccCCCCEEEECCch-------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 3 479999998742 133678999997 999999999853
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=106.83 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=84.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++ .+ .++++++.+|+.++ ..+++|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~-~~----------~~~~~~~~~d~~~~--~~~~~~ 108 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR-HG----------LDNVEFRQQDLFDW--TPDRQW 108 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG-GC----------CTTEEEEECCTTSC--CCSSCE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh-cC----------CCCeEEEecccccC--CCCCce
Confidence 345679999999999999999887 6799999999999999998 22 25799999999987 357899
Q ss_pred cEEEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++...- .++.. .++++++++.|+|||.+++......
T Consensus 109 D~v~~~~~l-----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 109 DAVFFAHWL-----AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp EEEEEESCG-----GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eEEEEechh-----hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 999985311 22222 6789999999999999998876654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=111.41 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=84.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+.+.. +.+++++|++|.+++.|++.+.... ..++++++.+|+.+... +++|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~v~~~~~d~~~~~~--~~~f 104 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG------VSERVHFIHNDAAGYVA--NEKC 104 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEESCCTTCCC--SSCE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEECChHhCCc--CCCC
Confidence 3567899999999999999998876 5799999999999999998874222 13589999999988643 6789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+|++-... ...+ ...++++++++.|+|||.+++..
T Consensus 105 D~V~~~~~~-~~~~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 105 DVAACVGAT-WIAG---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEEEEESCG-GGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CEEEECCCh-HhcC---CHHHHHHHHHHHcCCCeEEEEec
Confidence 999973211 1111 23688999999999999998854
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=112.13 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=91.3
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.+.....+.++.+||+||||+|.++..+.+..|+.++++||+++.+++.|++.+.... -++++++.+|+.+.
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~ 99 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-------IKNVKFLQANIFSL 99 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCGGGC
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCCcEEEEcccccC
Confidence 33333344457789999999999999999999889999999999999999999875322 24799999999875
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
. ..+++||+|++...-. .++ ...++++.+++.|+|||.+++...
T Consensus 100 ~-~~~~~fD~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 100 P-FEDSSFDHIFVCFVLE-HLQ---SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp C-SCTTCEEEEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCCCCeeEEEEechhh-hcC---CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 3468999999853221 111 225899999999999999988654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=112.00 Aligned_cols=105 Identities=14% Similarity=0.002 Sum_probs=85.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.++.+||+||||+|..+..+...+|+.+|++||+++.+++.|++...... -.+++++++|+.++... ..++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------l~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG-------LKGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-------CSSEEEEECCHHHHTTSTTTTTC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-------CCceEEEECcHHHhhcccccCCC
Confidence 35678999999999999999988899999999999999999998764222 23599999999887532 2478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+|++..... -..+++.+.+.|+|||.+++-..
T Consensus 152 fD~I~s~a~~~--------~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 152 YARAVARAVAP--------LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEEEEEESSCC--------HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ceEEEECCcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999975431 25789999999999999887554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=110.09 Aligned_cols=109 Identities=14% Similarity=0.001 Sum_probs=84.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|.++..+++.. ..+|++||+||.+++.|++++.... -++++++.+|+.+++....++||+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~-------~~~v~~~~~D~~~~~~~~~~~fD~ 125 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK-------AGNARVVNSNAMSFLAQKGTPHNI 125 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT-------CCSEEEECSCHHHHHSSCCCCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEECCHHHHHhhcCCCCCE
Confidence 46799999999999999877653 3599999999999999999875322 257999999999987666678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~~~ 261 (345)
|++|..-. .-...++++.+.+ .|+|||++++.+....
T Consensus 126 V~~~~p~~-----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 126 VFVDPPFR-----RGLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp EEECCSSS-----TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred EEECCCCC-----CCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 99975311 1123567777765 4999999998776544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=107.02 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=82.9
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++.+||+||||+|..+..+.+. ..+|+++|+++.+++.|++++.... -++++++.+|+.+... ..++|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~-~~~~~ 144 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD-------LHNVSTRHGDGWQGWQ-ARAPF 144 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCCG-GGCCE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC-------CCceEEEECCcccCCc-cCCCc
Confidence 356789999999999999999887 6899999999999999999875322 2479999999988654 36789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|+++.... .++ +.+.+.|+|||.+++.+..
T Consensus 145 D~i~~~~~~~-~~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPP-EIP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCS-SCC---------THHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchh-hhh---------HHHHHhcccCcEEEEEEcC
Confidence 9999975332 222 2578999999999999887
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=110.12 Aligned_cols=111 Identities=12% Similarity=0.029 Sum_probs=84.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc-c
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR-Y 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~-y 217 (345)
+..+||++|||+|.++..+++. ...+|++||+||.+++.|++++..... ..++++++.+|+.+++.. .+++ |
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~f 126 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKC-----SSEQAEVINQSSLDFLKQPQNQPHF 126 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC-----CTTTEEEECSCHHHHTTSCCSSCCE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCC-----CccceEEEECCHHHHHHhhccCCCC
Confidence 4679999999999999987765 336999999999999999998753221 015899999999988654 3567 9
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHH--HhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKL--KDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~--~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++|..-. .-...++++.+ .+.|+|||++++.+....
T Consensus 127 D~I~~~~~~~-----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 127 DVVFLDPPFH-----FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EEEEECCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CEEEECCCCC-----CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9999975311 11235678888 567999999988776543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.4e-12 Score=117.75 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=88.7
Q ss_pred CCCCCEEEEeecccHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLML-DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||+||||+|..+..+. ...|+.+|+++|+++.+++.|++++.... ...+++++.+|+.+... +++|
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~--~~~f 188 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA------LAGQITLHRQDAWKLDT--REGY 188 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST------TGGGEEEEECCGGGCCC--CSCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC------CCCceEEEECchhcCCc--cCCe
Confidence 567899999999999999884 45688999999999999999999986432 14579999999998632 3899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++..... ..+..-...++++++++.|+|||.+++.......
T Consensus 189 D~v~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 189 DLLTSNGLNI-YEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp EEEECCSSGG-GCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred EEEEECChhh-hcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 9999743111 1222222345899999999999999998766543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-11 Score=107.64 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=85.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+.+|+.+++++|+++.+++.|++.. ++++++.+|+.++. .+++||
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------------~~~~~~~~d~~~~~--~~~~fD 97 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------------PNTNFGKADLATWK--PAQKAD 97 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------------TTSEEEECCTTTCC--CSSCEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------CCcEEEECChhhcC--ccCCcC
Confidence 4678999999999999999998888899999999999999999872 35889999998864 567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++...-. ..+ ....+++++++.|+|||.+++..+..
T Consensus 98 ~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 98 LLYANAVFQ-WVP---DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp EEEEESCGG-GST---THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred EEEEeCchh-hCC---CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 999843221 111 24678999999999999999987654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=113.77 Aligned_cols=108 Identities=14% Similarity=0.058 Sum_probs=86.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. +.++++||+++.+++.|++.+.... ..++++++.+|+.+.....+++||+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD~ 139 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG------VSDNMQFIHCAAQDVASHLETPVDL 139 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C------CGGGEEEEESCGGGTGGGCSSCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC------CCcceEEEEcCHHHhhhhcCCCceE
Confidence 4679999999999999999876 6799999999999999999875332 1368999999999876456789999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++...-. .++ ...++++.+++.|+|||.+++....
T Consensus 140 v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 140 ILFHAVLE-WVA---DPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEEESCGG-GCS---CHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEECchhh-ccc---CHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99853221 122 2267999999999999999987754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=107.07 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=85.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|..+..+.+.+|+.+++++|++|.+++.|++.+.... -++++++.+|+.++. ..++||+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~--~~~~~D~ 135 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-------LENIEPVQSRVEEFP--SEPPFDG 135 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-------CSSEEEEECCTTTSC--CCSCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCeEEEecchhhCC--ccCCcCE
Confidence 4679999999999999999988889999999999999999998774322 234999999998875 3578999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++..+. .-..+++.+++.|+|||.+++....
T Consensus 136 i~~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 136 VISRAFA--------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp EECSCSS--------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred EEEeccC--------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9975431 1357999999999999999987553
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=107.76 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..+ +++++|+++.+++.|++.+. . +++++.+|+.+.. .+++||
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~----------~-~v~~~~~d~~~~~--~~~~fD 105 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK----------D-GITYIHSRFEDAQ--LPRRYD 105 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC----------S-CEEEEESCGGGCC--CSSCEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh----------C-CeEEEEccHHHcC--cCCccc
Confidence 4678999999999999999987643 89999999999999999874 1 6999999998873 467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHH-hccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLK-DRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~-~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. +++ ...+++++++ +.|+|||.+++......
T Consensus 106 ~v~~~~~l~-~~~---~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 106 NIVLTHVLE-HID---DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp EEEEESCGG-GCS---SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred EEEEhhHHH-hhc---CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 999843211 122 2368999999 99999999999876554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=110.51 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=87.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-CCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-LEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+..+||+||||+|.++..+.+..|+.++++||+++.+++.|++...... .......-++++++.+|+.+++.. ....
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4578999999999999999998888899999999999999987653210 000000124799999999987763 4678
Q ss_pred ccEEEEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|.|++...++.. .-..+...++++.+.+.|+|||.+++..
T Consensus 129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 9999876544321 0112334689999999999999998854
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-12 Score=116.79 Aligned_cols=105 Identities=10% Similarity=-0.084 Sum_probs=86.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+++..+. +|++||++|.+++.|+++...... ..+++++.+|+.+++. +++||
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~------~~~v~~~~~D~~~~~~--~~~fD 194 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV------EDRMSAYNMDNRDFPG--ENIAD 194 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC------TTTEEEECSCTTTCCC--CSCEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC------CceEEEEECCHHHhcc--cCCcc
Confidence 45789999999999999999987554 899999999999999998754432 3579999999999875 68899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++|... ...++++.+.+.|+|||++++.....
T Consensus 195 ~Vi~~~p~--------~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 195 RILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp EEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEEECCch--------hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 99997432 22578999999999999998866543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=110.65 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=81.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-------CCCCC-C--CCCCcEEEEEcccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-------DLEKP-T--ATGGVLQVHIGDVFSP 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-------~~~~~-~--~~~~rv~v~~gDa~~~ 209 (345)
++.+||++|||+|..+.+|.+. +.+|++||++|.+++.|++..+.. ...+. . ...++++++++|+.+.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5679999999999999999875 579999999999999998766431 00000 0 0146899999999986
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
-....++||+|+.-..- ..++.. ....+++.+++.|+|||++++
T Consensus 146 ~~~~~~~FD~V~~~~~l-~~l~~~-~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGAL-VAINPG-DHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSST-TTSCGG-GHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhh-hhCCHH-HHHHHHHHHHHHcCCCeEEEE
Confidence 43223799999963211 123322 345789999999999999864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-11 Score=111.13 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=88.4
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
...++.+||+||||+|..+..+.+.+| +.+|+++|++|.+++.|++.+... .++++++++|+.++.. ++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~v~~~~~d~~~~~~--~~ 88 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL--------PYDSEFLEGDATEIEL--ND 88 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS--------SSEEEEEESCTTTCCC--SS
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc--------CCceEEEEcchhhcCc--CC
Confidence 345788999999999999999998888 489999999999999999987532 3489999999998642 56
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|++...-. .++ ...++++++++.|+|||.+++....
T Consensus 89 ~fD~v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 89 KYDIAICHAFLL-HMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CEEEEEEESCGG-GCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CeeEEEECChhh-cCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 899999864322 122 2368999999999999999976654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=113.00 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=80.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...+||+||||+|..+..+.++ ..+|++||+++.|++.|++ .++++++++|+.+. .-.+++||+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~-------------~~~v~~~~~~~e~~-~~~~~sfD~ 102 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR-------------HPRVTYAVAPAEDT-GLPPASVDV 102 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC-------------CTTEEEEECCTTCC-CCCSSCEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh-------------cCCceeehhhhhhh-cccCCcccE
Confidence 4578999999999999999875 4689999999999987654 35799999999874 345789999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-..- ..+....+++++++.|+|||++++..+...
T Consensus 103 v~~~~~~-----h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 103 AIAAQAM-----HWFDLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEECSCC-----TTCCHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EEEeeeh-----hHhhHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9983211 122346799999999999999988776544
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=114.40 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=84.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC---------------------------
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK--------------------------- 191 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~--------------------------- 191 (345)
.++++||+||||+|.++..+++.++..+|++||||+.+++.|++.........
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46789999999999999999999888999999999999999998764211000
Q ss_pred ------------------------CCCCCCcEEEEEccccccc----ccCCCcccEEEEcCCCCCCCC---CCcchHHHH
Q 038076 192 ------------------------PTATGGVLQVHIGDVFSPS----EDASGRYAGIVVDLFSEGKVL---PQLEEVATW 240 (345)
Q Consensus 192 ------------------------~~~~~~rv~v~~gDa~~~l----~~~~~~yD~Ii~D~f~~~~~p---~~l~t~ef~ 240 (345)
......+++++.+|..... ....++||+|++..... .+. ..-.-.+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~-~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTK-WVHLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHH-HHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHH-HhhhcCCHHHHHHHH
Confidence 0001158999999987542 12468999999842110 000 000335789
Q ss_pred HHHHhccCCCcEEEEEe
Q 038076 241 LKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 241 ~~~~~~L~pgGvlvvn~ 257 (345)
+.+++.|+|||.+++..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999999854
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=104.89 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=84.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+||+||||+|.++..+.+. +.++++||+++.+++.|++.+ ++++++.+|+.++ ...+++||+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~~d~~~~-~~~~~~fD~v 106 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH------------PSVTFHHGTITDL-SDSPKRWAGL 106 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC------------TTSEEECCCGGGG-GGSCCCEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------------CCCeEEeCccccc-ccCCCCeEEE
Confidence 789999999999999999876 569999999999999999874 3588999999885 3456899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++...-. ..+ .-...++++.+++.|+|||.+++.......
T Consensus 107 ~~~~~l~-~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 107 LAWYSLI-HMG-PGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp EEESSST-TCC-TTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred EehhhHh-cCC-HHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 9853221 122 113468999999999999999998876553
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=109.13 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=79.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC----C-CCCCCCcEEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE----K-PTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~-~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
.++.+||++|||+|..+.++.+. +.+|++||+++.|++.|++........ + ..+..++++++++|+.+.-...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 45689999999999999999886 579999999999999999886531000 0 0001367999999998863211
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.++||+|++-..- ..++. -....+++++++.|+|||.++
T Consensus 99 ~~~fD~v~~~~~l-~~l~~-~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 99 IGHCAAFYDRAAM-IALPA-DMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHSEEEEEEESCG-GGSCH-HHHHHHHHHHHHHSCSEEEEE
T ss_pred CCCEEEEEECcch-hhCCH-HHHHHHHHHHHHHcCCCcEEE
Confidence 2689999963211 11221 123468999999999999833
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=108.68 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+.+ +.+|++||+++.+++.|++.+.. .++++++.+|+.+. ...+++||
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~~d~~~~-~~~~~~fD 122 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG---------NNKIIFEANDILTK-EFPENNFD 122 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS---------CTTEEEEECCTTTC-CCCTTCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc---------CCCeEEEECccccC-CCCCCcEE
Confidence 456799999999999999999865 68999999999999999998752 26899999999885 33568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .++ .-...++++++++.|+|||.+++......
T Consensus 123 ~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 123 LIYSRDAIL-ALS-LENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp EEEEESCGG-GSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred EEeHHHHHH-hcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999842111 111 11346789999999999999998765433
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-11 Score=106.50 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..+ .+++++|+++.+++.|++.+. .++++++.+|+.+. ...+++||
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~~-~~~~~~fD 110 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT----------SPVVCYEQKAIEDI-AIEPDAYN 110 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC----------CTTEEEEECCGGGC-CCCTTCEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc----------cCCeEEEEcchhhC-CCCCCCeE
Confidence 3678999999999999999988643 499999999999999999875 35799999999874 33468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++ ...++++++++.|+|||.+++.+..
T Consensus 111 ~v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 111 VVLSSLALH-YIA---SFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEchhhh-hhh---hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999853211 111 2468999999999999999987544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=103.07 Aligned_cols=106 Identities=17% Similarity=0.060 Sum_probs=85.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++.+||++|||+|..+..+.+.. .+++++|+++.+++.|++.+.... ..++++++.+|+.+.+.. .++|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~-~~~~ 101 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG------LGDNVTLMEGDAPEALCK-IPDI 101 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT------CCTTEEEEESCHHHHHTT-SCCE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC------CCcceEEEecCHHHhccc-CCCC
Confidence 3467899999999999999998765 899999999999999999774322 136899999999885543 2589
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|+++.... ...++++.+.+.|+|||.+++....
T Consensus 102 D~v~~~~~~~-------~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 102 DIAVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp EEEEESCCTT-------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CEEEECCchH-------HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999864321 2378999999999999999987764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=112.10 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||++|||+|.++..+.+. .|+.+|+++|+++.+++.|++++... . .++++++.+|+.+.+ .+++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-------~~~v~~~~~d~~~~~--~~~~ 179 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-------IGNVRTSRSDIADFI--SDQM 179 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-------CTTEEEECSCTTTCC--CSCC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-------CCcEEEEECchhccC--cCCC
Confidence 45679999999999999999987 67899999999999999999987422 1 257999999998854 3478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|++|..+. .++++.+.+.|+|||.+++....
T Consensus 180 fD~Vi~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 180 YDAVIADIPDP---------WNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEEEECCSCG---------GGSHHHHHHTEEEEEEEEEEESS
T ss_pred ccEEEEcCcCH---------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999964321 36899999999999999988754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=106.71 Aligned_cols=107 Identities=10% Similarity=-0.101 Sum_probs=83.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
+..+||++|||+|..+..+.+..+ +++++|+|+.+++.|++++.... .+++++.+|+.+++.. ..++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~ 110 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG--------LGARVVALPVEVFLPEAKAQGER 110 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT--------CCCEEECSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC--------CceEEEeccHHHHHHhhhccCCc
Confidence 578999999999999999988644 49999999999999999875321 1789999999986543 2358
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~~~~ 262 (345)
||+|++|..-. . ...++++.+. +.|+|||++++.+.....
T Consensus 111 ~D~i~~~~~~~-~-----~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 111 FTVAFMAPPYA-M-----DLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp EEEEEECCCTT-S-----CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred eEEEEECCCCc-h-----hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 99999975321 1 2235677776 999999999998876554
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=108.55 Aligned_cols=110 Identities=13% Similarity=0.007 Sum_probs=84.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+.+.++ .+|+++|+++.+++.|++.+.... ..++++++.+|+.++ +++||
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~----~~~fD 131 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE------NLRSKRVLLAGWEQF----DEPVD 131 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC------CCSCEEEEESCGGGC----CCCCS
T ss_pred CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC------CCCCeEEEECChhhC----CCCee
Confidence 4567999999999999999986554 599999999999999999874322 146899999999775 28899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .++. -...++++++++.|+|||.+++......
T Consensus 132 ~v~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 132 RIVSIGAFE-HFGH-ERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp EEEEESCGG-GTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred EEEEeCchh-hcCh-HHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 999742111 1111 1346899999999999999998776544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=101.18 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=82.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.+||+||||+|.++..+.+. +.+++++|+++.+++.|++.++ ++++.+|+...- ..++|
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~d~~~~~--~~~~f 103 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG-------------RPVRTMLFHQLD--AIDAY 103 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHT-------------SCCEECCGGGCC--CCSCE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcC-------------CceEEeeeccCC--CCCcE
Confidence 345789999999999999999875 5799999999999999999873 456778888754 67899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++...-. ..+ .-.-..+++.+++.|+|||.+++.+.....
T Consensus 104 D~v~~~~~l~-~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 146 (211)
T 3e23_A 104 DAVWAHACLL-HVP-RDELADVLKLIWRALKPGGLFYASYKSGEG 146 (211)
T ss_dssp EEEEECSCGG-GSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSS
T ss_pred EEEEecCchh-hcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCc
Confidence 9999842111 111 012357899999999999999998765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=106.95 Aligned_cols=112 Identities=10% Similarity=-0.013 Sum_probs=88.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||+||||+|..+..+.+.. |..+++++|+++.+++.|++.+.... .++++++.+|+.+.- ..+++|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~-~~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-------LKNVEVLKSEENKIP-LPDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-------CTTEEEEECBTTBCS-SCSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEecccccCC-CCCCCe
Confidence 456799999999999999999875 67899999999999999999874222 247999999998752 346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++...-. ..+ ...++++++++.|+|||.+++..+....
T Consensus 108 D~v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 108 DFIFMAFTFH-ELS---EPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEEEESCGG-GCS---SHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred eEEEeehhhh-hcC---CHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 9999853221 111 2368999999999999999987665543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=111.56 Aligned_cols=108 Identities=14% Similarity=-0.007 Sum_probs=85.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++.+||+||||+|..+..+.+.+ +..+|++||++|.+++.|++.+.... ...++++++++|+.+.-...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-----DTYKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC------CCTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCCCceEEEEcCHHhCCccccccc
Confidence 367899999999999999999875 78999999999999999999874220 01468999999998853222
Q ss_pred -CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 -SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 -~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+|++...- .++.-.++++++++.|+|||.+++.
T Consensus 110 ~~~~fD~V~~~~~l-----~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 110 DKQKIDMITAVECA-----HWFDFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TSSCEEEEEEESCG-----GGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCeeEEeHhhHH-----HHhCHHHHHHHHHHhcCCCcEEEEE
Confidence 2789999985321 1224568999999999999999883
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=106.74 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=83.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..+ +++++|++|.+++.|++.+... .++++++.+|+.+. ...+++||
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~-~~~~~~~D 105 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR--------ESNVEFIVGDARKL-SFEDKTFD 105 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--------TCCCEEEECCTTSC-CSCTTCEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc--------CCCceEEECchhcC-CCCCCcEE
Confidence 4578999999999999999988755 9999999999999999987422 36799999999874 23457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-... ..-...++++.+++.|+|||.+++....
T Consensus 106 ~v~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 106 YVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCchHhC--CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99986321000 0012357899999999999999987664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=109.71 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=86.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+.+ +.+|+++|+++.+++.|++.+.... ..++++++.+|+.++ +++||
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~----~~~fD 157 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID------TNRSRQVLLQGWEDF----AEPVD 157 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC------CSSCEEEEESCGGGC----CCCCS
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEECChHHC----CCCcC
Confidence 456799999999999999998765 5699999999999999999875322 136799999999775 37899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++...-. .++. -...++++++.+.|+|||.+++.......
T Consensus 158 ~v~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 158 RIVSIEAFE-HFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp EEEEESCGG-GTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred EEEEeChHH-hcCH-HHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 999752111 1111 13468999999999999999988776543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=107.42 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=86.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+..|+.+++++|+++.+++.|+++..... -++++++.+|..+.+. .++||
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~v~~~~~d~~~~~~--~~~fD 178 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-------IKNIHILQSDWFSALA--GQQFA 178 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-------CCSEEEECCSTTGGGT--TCCEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCceEEEEcchhhhcc--cCCcc
Confidence 45679999999999999999988899999999999999999998874221 2379999999988653 56899
Q ss_pred EEEEcCCCCCC------------CCC-Cc--------chHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGK------------VLP-QL--------EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~------------~p~-~l--------~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++..-... .|. .+ .-.++++.+.+.|+|||.+++...
T Consensus 179 ~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 179 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred EEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99997432110 010 01 236788999999999999998754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=107.41 Aligned_cols=109 Identities=9% Similarity=0.063 Sum_probs=85.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+.. +.+|+++|+++.+++.|++.+.... ..++++++.+|+.+. ...+++||
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~-~~~~~~fD 131 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG------LANRVTFSYADAMDL-PFEDASFD 131 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEECCTTSC-CSCTTCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEECccccC-CCCCCCcc
Confidence 467899999999999999998865 6899999999999999998874322 135799999999874 33467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++ ...++++++++.|+|||.+++....
T Consensus 132 ~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 132 AVWALESLH-HMP---DRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EEEEESCTT-TSS---CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEEEechhh-hCC---CHHHHHHHHHHHcCCCeEEEEEEee
Confidence 999742211 122 2368999999999999999886544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=109.21 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+.. .+++++|+++.+++.|++.+.... .++++++.+|+.+. ...+++||
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-------~~~v~~~~~d~~~l-~~~~~~fD 105 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG-------HQQVEYVQGDAEQM-PFTDERFH 105 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCC-CC-CSCTTCEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEEecHHhC-CCCCCCEE
Confidence 467899999999999999998865 399999999999999998874221 25799999999874 33568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++..... ..+ ....+++++++.|+|||.+++...
T Consensus 106 ~V~~~~~l~-~~~---d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 106 IVTCRIAAH-HFP---NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp EEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEhhhhH-hcC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999853221 122 235899999999999999988543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=99.78 Aligned_cols=115 Identities=8% Similarity=-0.037 Sum_probs=90.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+ +..+++++|+++.+++.|++.+.... -++++++.+|+.+.+. +++||
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~~--~~~~D 102 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN-------IKNCQIIKGRAEDVLD--KLEFN 102 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT-------CCSEEEEESCHHHHGG--GCCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC-------CCcEEEEECCcccccc--CCCCc
Confidence 4567999999999999999987 77899999999999999999874322 2579999999988554 37899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
+|+++.. ....++++.+++. |||.+++...... ....+.+.+++..
T Consensus 103 ~i~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~~-------------------~~~~~~~~l~~~g 148 (183)
T 2yxd_A 103 KAFIGGT--------KNIEKIIEILDKK--KINHIVANTIVLE-------------------NAAKIINEFESRG 148 (183)
T ss_dssp EEEECSC--------SCHHHHHHHHHHT--TCCEEEEEESCHH-------------------HHHHHHHHHHHTT
T ss_pred EEEECCc--------ccHHHHHHHHhhC--CCCEEEEEecccc-------------------cHHHHHHHHHHcC
Confidence 9998654 2346788888888 9999998875433 2456677777664
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-11 Score=108.87 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||++|||+|.++..+++. .|..+++++|+++.+++.|++.+... . .++++++.+|+.+. .-.+++
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-------~~~v~~~~~d~~~~-~~~~~~ 166 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-------VENVRFHLGKLEEA-ELEEAA 166 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------CCCEEEEESCGGGC-CCCTTC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-------CCCEEEEECchhhc-CCCCCC
Confidence 46679999999999999999987 56889999999999999999987311 1 25799999999886 113468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|++|..+. .++++.+.+.|+|||.+++....
T Consensus 167 ~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 167 YDGVALDLMEP---------WKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp EEEEEEESSCG---------GGGHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEECCcCH---------HHHHHHHHHhCCCCCEEEEEeCC
Confidence 99999975321 36899999999999999987754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-11 Score=112.35 Aligned_cols=111 Identities=11% Similarity=0.101 Sum_probs=87.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||.|.++..+.+.+ +.+|++||+++.+++.|++.+..... .++++++.+|+.+. ...+++|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~-~~~~~~f 186 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI------DDHVRSRVCNMLDT-PFDKGAV 186 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECCTTSC-CCCTTCE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCceEEEECChhcC-CCCCCCE
Confidence 3466899999999999999998864 58999999999999999998743221 35899999999874 3346899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++...- .++-..++++.+++.|+|||.+++..+...
T Consensus 187 D~V~~~~~l-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 187 TASWNNEST-----MYVDLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp EEEEEESCG-----GGSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred eEEEECCch-----hhCCHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 999973211 112267899999999999999988665443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=104.39 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=82.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++.+. ++++++.+|+.++.. . ++||
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~~d~~~~~~-~-~~fD 108 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-----------KEFSITEGDFLSFEV-P-TSID 108 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-----------TTCCEESCCSSSCCC-C-SCCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-----------CceEEEeCChhhcCC-C-CCeE
Confidence 36789999999999999999875 6799999999999999999874 358899999988632 2 8999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .++ .....++++++++.|+|||.+++......
T Consensus 109 ~v~~~~~l~-~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 109 TIVSTYAFH-HLT-DDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp EEEEESCGG-GSC-HHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred EEEECcchh-cCC-hHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 999853221 111 11223489999999999999998865433
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-11 Score=109.29 Aligned_cols=117 Identities=11% Similarity=0.007 Sum_probs=89.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~ 214 (345)
.+..+||++|||+|..+..+.+..++ .+|+++|+++.+++.++++..... -++++++.+|+.++... ..
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-------~~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-------VLNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCHHHHHHHHHHTT
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-------CCcEEEEeCChHhcchhhhhcc
Confidence 35678999999999999999987666 899999999999999998874222 23799999999987532 25
Q ss_pred CcccEEEEcCCCCC-CCCC-------------CcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEG-KVLP-------------QLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~-~~p~-------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++||+|++|....+ +... .-...++++.+.+.|+|||.+++...+...
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~ 216 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV 216 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence 78999999975432 1100 012368899999999999999987765544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=106.77 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=83.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+ .+..+++++|+++.+++.|++++.... .++++++.+|+.++. +++||
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~---~~~fD 127 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNG-------IYDIALQKTSLLADV---DGKFD 127 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTT-------CCCCEEEESSTTTTC---CSCEE
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcC-------CCceEEEeccccccC---CCCce
Confidence 4568999999999999999876 466799999999999999999875332 123999999998864 57899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|+++... + ...++++.+++.|+|||.+++....
T Consensus 128 ~i~~~~~~------~-~~~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 128 LIVANILA------E-ILLDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp EEEEESCH------H-HHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred EEEECCcH------H-HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 99986422 1 2367899999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=110.33 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+. +.+++++|+++.+++.|++.+. +++++.+|+.++.. +++||
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~------------~~~~~~~d~~~~~~--~~~fD 112 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP------------DAVLHHGDMRDFSL--GRRFS 112 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT------------TSEEEECCTTTCCC--SCCEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------------CCEEEECChHHCCc--cCCcC
Confidence 35689999999999999999875 4689999999999999999752 58899999998632 68999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++....-..++..-....+++++++.|+|||.+++..+.
T Consensus 113 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 113 AVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp EEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred EEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 99984211111211113357899999999999999997543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=107.13 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=82.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..+ +++++|+++.+++.|++.+ ++++++.+|+.++. .+++||
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~------------~~~~~~~~d~~~~~--~~~~~D 102 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL------------PDATLHQGDMRDFR--LGRKFS 102 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC------------TTCEEEECCTTTCC--CSSCEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC------------CCCEEEECCHHHcc--cCCCCc
Confidence 4578999999999999999988754 8999999999999999975 24889999998853 267899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++....-...+..-...++++.+++.|+|||.+++..+...
T Consensus 103 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 103 AVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred EEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 9996221111122112336789999999999999998765543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=104.06 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++... .++++++.+|+.+. ...+++||
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~~-~~~~~~fD 118 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE----------GPDLSFIKGDLSSL-PFENEQFE 118 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC----------BTTEEEEECBTTBC-SSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc----------cCCceEEEcchhcC-CCCCCCcc
Confidence 46789999999999999999886 6799999999999999998752 46799999999885 33478999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++...-. ..+ ...++++.+++.|+|||.+++.......
T Consensus 119 ~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 119 AIMAINSLE-WTE---EPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp EEEEESCTT-SSS---CHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred EEEEcChHh-hcc---CHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 999843221 121 2358999999999999999998765544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=106.34 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=86.4
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+..+....++.+||++|||+|..+..++.. ++.+++++|+++.+++.|++.+... .++++++.+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~ 81 (209)
T 2p8j_A 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSREN--------NFKLNISKGDIR 81 (209)
T ss_dssp HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHH--------TCCCCEEECCTT
T ss_pred HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhc--------CCceEEEECchh
Confidence 3333333333456789999999999875444433 5679999999999999999886421 356889999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+. ...+++||+|++...- .+.+ .-....+++.+++.|+|||.+++...+..
T Consensus 82 ~~-~~~~~~fD~v~~~~~l-~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 82 KL-PFKDESMSFVYSYGTI-FHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp SC-CSCTTCEEEEEECSCG-GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hC-CCCCCceeEEEEcChH-HhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 74 3346789999974211 0111 11346789999999999999999876544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-11 Score=106.96 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred cccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CC
Q 038076 136 PAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-AS 214 (345)
Q Consensus 136 ~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~ 214 (345)
+.+.++.+||+||||+|.++..+.+. +.+|+++|+++.+++.|++. ++++.+|+.+++.. .+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---------------~~~~~~d~~~~~~~~~~ 99 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---------------FNVVKSDAIEYLKSLPD 99 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---------------SEEECSCHHHHHHTSCT
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---------------cceeeccHHHHhhhcCC
Confidence 33456789999999999999998886 56899999999999999874 46788899887633 56
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
++||+|++...-. .++. -.-.++++++++.|+|||.+++......
T Consensus 100 ~~fD~i~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 100 KYLDGVMISHFVE-HLDP-ERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp TCBSEEEEESCGG-GSCG-GGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred CCeeEEEECCchh-hCCc-HHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 8999999842111 1111 1236899999999999999999887654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-11 Score=112.84 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=82.8
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcC-------CCCCCCCCCCCCcEEEEEcccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFG-------LSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~-------~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
..+..+||++|||+|.++..+++. .|..+|+++|++|.+++.|++++. +.... ...++++++.+|+.+.
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~---~~~~~v~~~~~d~~~~ 179 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE---EWPDNVDFIHKDISGA 179 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS---CCCCCEEEEESCTTCC
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc---ccCCceEEEECChHHc
Confidence 346679999999999999999987 466899999999999999998764 11100 0135899999999987
Q ss_pred ccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 210 SED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 210 l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+.. .+++||+|++|..++. .+++.+.+.|+|||.+++....
T Consensus 180 ~~~~~~~~fD~V~~~~~~~~---------~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 180 TEDIKSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp C-------EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESS
T ss_pred ccccCCCCeeEEEECCCCHH---------HHHHHHHHhcCCCcEEEEEeCC
Confidence 532 3467999999764321 2688999999999999977653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-11 Score=110.77 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=85.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|.++..+++. .|..+++++|++|.+++.|++++.... ..++++++.+|+.+.+ .+++|
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~--~~~~~ 182 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG------LIERVTIKVRDISEGF--DEKDV 182 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT------CGGGEEEECCCGGGCC--SCCSE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC------CCCCEEEEECCHHHcc--cCCcc
Confidence 45679999999999999999987 568999999999999999999874221 1257999999999874 34689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++|..+. .++++.+.+.|+|||.+++....
T Consensus 183 D~V~~~~~~~---------~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 183 DALFLDVPDP---------WNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEECCSCG---------GGTHHHHHHHEEEEEEEEEEESS
T ss_pred CEEEECCcCH---------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999975321 36789999999999999987754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=108.02 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=82.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. .+++++|+++.+++.|++.+... ..+++++.+|+.+.. .+++||
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~~--~~~~fD 98 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET--------NRHVDFWVQDMRELE--LPEPVD 98 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT--------TCCCEEEECCGGGCC--CSSCEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc--------CCceEEEEcChhhcC--CCCCcC
Confidence 45689999999999999988865 79999999999999999987421 357899999998863 247899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++....-...+..-...++++.+++.|+|||.+++.+..
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99984211111111123457899999999999999987754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=103.38 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=87.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++........ .....+++++.+|+.+. ...+++||
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D 103 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLN--QKTGGKAEFKVENASSL-SFHDSSFD 103 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCC--SSSSCEEEEEECCTTSC-CSCTTCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCc--cccCcceEEEEeccccc-CCCCCcee
Confidence 46789999999999999999876 679999999999999999987543211 11234799999999875 33568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .++..-...++++.+++.|+|||.+++......
T Consensus 104 ~v~~~~~l~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 104 FAVMQAFLT-SVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EEEEESCGG-GCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred EEEEcchhh-cCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 999853221 122222233799999999999999998765443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-11 Score=113.68 Aligned_cols=115 Identities=11% Similarity=-0.042 Sum_probs=85.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
++.+||++|||+|.++..+++. +.+|++||+|+.+++.|++++..... .+.+++++.+|+.+++.. ..++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl-----~~~~v~~i~~D~~~~l~~~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL-----EQAPIRWICEDAMKFIQREERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC-----TTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECcHHHHHHHHHhcCCC
Confidence 4679999999999999999874 34999999999999999998754321 123699999999998753 2578
Q ss_pred ccEEEEcCCCCCCCC-CCc-----chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVL-PQL-----EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p-~~l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+|++|...-...+ ... .-.++++.+.+.|+|||++++.+....
T Consensus 226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 999999864211000 000 125788999999999999776655443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=107.25 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=86.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+ ++.+|+++|+++.+++.|++.+.... ...+++++.+|+.++. ..++||+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~--~~~~fD~ 135 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSP------KAEYFSFVKEDVFTWR--PTELFDL 135 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSG------GGGGEEEECCCTTTCC--CSSCEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccC------CCcceEEEECchhcCC--CCCCeeE
Confidence 456999999999999998865 57899999999999999999885321 2467999999999864 4569999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++...-. .++ .-...++++.+++.|+|||.+++.......
T Consensus 136 v~~~~~l~-~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 176 (235)
T 3lcc_A 136 IFDYVFFC-AIE-PEMRPAWAKSMYELLKPDGELITLMYPITD 176 (235)
T ss_dssp EEEESSTT-TSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSC
T ss_pred EEEChhhh-cCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccc
Confidence 99743221 222 123468999999999999999987765543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=110.94 Aligned_cols=113 Identities=16% Similarity=0.001 Sum_probs=87.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..+..+||++|||+|+++.++.... |+.+|+++|+||.+++.|+++...... + +++++.+|+.++.. ..+.
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------~-~i~~~~~D~~~~~~-~~~~ 272 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------S-WIRFLRADARHLPR-FFPE 272 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------T-TCEEEECCGGGGGG-TCCC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------C-ceEEEeCChhhCcc-ccCC
Confidence 3466799999999999999999876 789999999999999999998753321 2 79999999999643 3456
Q ss_pred ccEEEEcCCCCCCCCCC--c--chHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQ--L--EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~--l--~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+|++|.+-+...... + .-.++++.+++.|+|||.+++-..
T Consensus 273 ~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 273 VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 89999986543222111 1 115788899999999999988654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=105.39 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=84.6
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--- 213 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--- 213 (345)
...+..+||+||||+|..+..+.+..+ +|++||++|.+++.|++.+. ..+++++.+|+.+.-...
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~~~~~~~~~ 120 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT----------AANISYRLLDGLVPEQAAQIH 120 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC----------CTTEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc----------ccCceEEECcccccccccccc
Confidence 345668999999999999999998765 89999999999999999873 347999999998853211
Q ss_pred -CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 214 -SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 214 -~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
...||+|++..... .++ .-...++++++++.|+|||.+++..+...
T Consensus 121 ~~~~~d~v~~~~~~~-~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 121 SEIGDANIYMRTGFH-HIP-VEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp HHHCSCEEEEESSST-TSC-GGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred cccCccEEEEcchhh-cCC-HHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 13499999864332 122 11346899999999999998776655433
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9e-11 Score=102.08 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++.+.... .++++++.+|+.+... +++||
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~~--~~~~D 99 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN-------LDNLHTRVVDLNNLTF--DRQYD 99 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-------CTTEEEEECCGGGCCC--CCCEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC-------CCCcEEEEcchhhCCC--CCCce
Confidence 35679999999999999999875 5799999999999999998774221 2469999999988532 68899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++...-. ..+ .-...++++.+++.|+|||.+++..
T Consensus 100 ~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 100 FILSTVVLM-FLE-AKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEESCGG-GSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcchhh-hCC-HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999853221 111 1134679999999999999976543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-11 Score=107.12 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=83.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++..... +.+++++.+|+.+.. .+++||
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~--------~~~v~~~~~d~~~~~--~~~~fD 107 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER--------NLKIEFLQGDVLEIA--FKNEFD 107 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--------TCCCEEEESCGGGCC--CCSCEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc--------CCceEEEECChhhcc--cCCCcc
Confidence 35679999999999999999875 579999999999999999887422 346999999998853 346899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++........+ .-...++++.+++.|+|||.+++.+..
T Consensus 108 ~v~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 108 AVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCCchhcCC-HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9997421111111 112357899999999999999987654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=106.09 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=81.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~ 215 (345)
.+..+||++|||+|.++..+++.. |..+|++||++|.+++.+.+.... .++++++.+|+.+.. ....+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~---------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK---------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH---------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc---------cCCeEEEEcccCChhhhcccCC
Confidence 456789999999999999999875 668999999998877665554421 247999999998842 33467
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|++|.... -....++.++.+.|+|||.+++.+..
T Consensus 147 ~~D~V~~~~~~~------~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 147 MVDVIFADVAQP------DQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cEEEEEEcCCCc------cHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 899999976411 12345688899999999999986654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-11 Score=109.45 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +..+++++|+++.+++.|++.+.... ...+++++.+|+.+.....+++||
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD 135 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK------RRFKVFFRAQDSYGRHMDLGKEFD 135 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC------CSSEEEEEESCTTTSCCCCSSCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC------CCccEEEEECCccccccCCCCCcC
Confidence 56789999999999988887765 55699999999999999999875322 135799999999875322467899
Q ss_pred EEEEcCCCCCCCCCC-cchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQ-LEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~-l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++...-. ....+ -...++++.+++.|+|||.+++.....
T Consensus 136 ~v~~~~~l~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 136 VISSQFSFH-YAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEESCGG-GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEECchhh-hhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999863211 10011 123678999999999999999887643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=113.72 Aligned_cols=111 Identities=16% Similarity=0.039 Sum_probs=86.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+. +.+|++||+|+.+++.|++++... +.+++++.+|+.+... ..++||+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~--------~~~v~~~~~D~~~~~~-~~~~fD~ 301 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN--------ALKAQALHSDVDEALT-EEARFDI 301 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT--------TCCCEEEECSTTTTSC-TTCCEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc--------CCCeEEEEcchhhccc-cCCCeEE
Confidence 5679999999999999999876 579999999999999999987533 2348999999998754 3579999
Q ss_pred EEEcCCCCCCC-CCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKV-LPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+++..-.... ...-...++++.+++.|+|||.+++.+....
T Consensus 302 Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 302 IVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp EEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred EEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 99975332211 1112345799999999999999998766443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=103.68 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=81.9
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..++.+||+||||+|..+..+.+.. |..+++++|+++.+++.|++.+.... -++++++.+|+...+. ..++
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~-~~~~ 146 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-------YDNVIVIVGDGTLGYE-PLAP 146 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-------CTTEEEEESCGGGCCG-GGCC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCeEEEECCcccCCC-CCCC
Confidence 3466799999999999999998875 55899999999999999998874221 2459999999966543 2568
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||+|+++.... .++ +.+.+.|+|||.+++.+...
T Consensus 147 fD~v~~~~~~~-~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 147 YDRIYTTAAGP-KIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp EEEEEESSBBS-SCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred eeEEEECCchH-HHH---------HHHHHHcCCCcEEEEEECCC
Confidence 99999864332 111 47889999999999988654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=113.53 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=87.3
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+.......++++||+||||+|.++..+.+. +..+|++||+++ +++.|++....... .++++++.+|+.
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~------~~~v~~~~~d~~ 125 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL------DHVVTIIKGKVE 125 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC------TTTEEEEESCTT
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC------CCcEEEEECcHH
Confidence 4444433333346789999999999999999876 667999999996 99999987753321 457999999999
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+. ....++||+|+++.... .....-...++++.+.+.|+|||+++.
T Consensus 126 ~~-~~~~~~fD~Iis~~~~~-~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 126 EV-ELPVEKVDIIISEWMGY-CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TC-CCSSSCEEEEEECCCBB-TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred Hc-cCCCCceEEEEEccccc-cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 86 33458999999864321 111222346788999999999999874
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-11 Score=103.67 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=85.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.+||+||||+|.++..+.+..+ .+++++|+++.+++.|++.+.. .++++++.+|+.+. ...+++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~---------~~~i~~~~~d~~~~-~~~~~~f 108 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH---------VPQLRWETMDVRKL-DFPSASF 108 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT---------CTTCEEEECCTTSC-CSCSSCE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc---------CCCcEEEEcchhcC-CCCCCcc
Confidence 35678999999999999999987643 3899999999999999998752 35799999999885 3346789
Q ss_pred cEEEEcCCC-----CCCCCCC------cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFS-----EGKVLPQ------LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~-----~~~~p~~------l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++...- ....+.. -...++++++.+.|+|||.+++......
T Consensus 109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 999974211 0000100 1236789999999999999998877543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=99.06 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.+++.+. +++++.+|+.+. ...+++||
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~------------~~~~~~~d~~~~-~~~~~~~D 109 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP------------EARWVVGDLSVD-QISETDFD 109 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT------------TSEEEECCTTTS-CCCCCCEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC------------CCcEEEcccccC-CCCCCcee
Confidence 46789999999999999999875 5799999999999999999762 478999999875 23457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++....-...+ .-...++++.+.+.|+|||.+++......
T Consensus 110 ~i~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 110 LIVSAGNVMGFLA-EDGREPALANIHRALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEEECCCCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred EEEECCcHHhhcC-hHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9998521111111 01236789999999999999999876554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-11 Score=112.40 Aligned_cols=113 Identities=16% Similarity=0.297 Sum_probs=85.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+. +.+|++||+++.+++.|++.+..... ....+++++.+|+.++- .+++||+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~v~~~~~d~~~~~--~~~~fD~ 153 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPA----DVRDRCTLVQGDMSAFA--LDKRFGT 153 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCH----HHHTTEEEEECBTTBCC--CSCCEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccc----ccccceEEEeCchhcCC--cCCCcCE
Confidence 4569999999999999999875 57899999999999999998753210 00157999999999863 2689999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++........ ..-...++++++++.|+|||.+++.+....
T Consensus 154 v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 154 VVISSGSINEL-DEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp EEECHHHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred EEECCcccccC-CHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 98631111111 111236899999999999999999887765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=102.28 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +..+++++|+++.+++.|++.+. ..+++++.+|+.+.. ..+++||
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~~~-~~~~~fD 109 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP----------DTGITYERADLDKLH-LPQDSFD 109 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC----------SSSEEEEECCGGGCC-CCTTCEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc----------cCCceEEEcChhhcc-CCCCCce
Confidence 35689999999999999998876 33499999999999999999864 247999999998853 3467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. ..+ ...++++.+++.|+|||.+++....
T Consensus 110 ~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 110 LAYSSLALH-YVE---DVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEecccc-ccc---hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999853211 111 2468999999999999999987643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=104.53 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=83.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+.. .++++++.+|+.+. ...+++||
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~~d~~~~-~~~~~~fD 160 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG---------MPVGKFILASMETA-TLPPNTYD 160 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT---------SSEEEEEESCGGGC-CCCSSCEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc---------CCceEEEEccHHHC-CCCCCCeE
Confidence 357899999999999999988764 56899999999999999998742 25799999999874 33467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++...-. .++. -...++++.+++.|+|||.+++...
T Consensus 161 ~v~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 161 LIVIQWTAI-YLTD-ADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhh-hCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999843111 1111 1236789999999999999988654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-11 Score=111.35 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCCCEEEEeecccHHHHHHHHh-------CCC-----CEEEEEECCH--------------HHHHHHHHhcCC-CCCCC-
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL-------WPS-----LKLEGWEIDE--------------ILIDKVRDYFGL-SDLEK- 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~-------~p~-----~~v~~VEidp--------------~vi~~A~~~f~~-~~~~~- 191 (345)
++.+||+||+|+|.....+.+. .|. .+++++|.+| ++.+.|++.+.. +....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4578999999999888776543 563 6899999998 344456665421 10000
Q ss_pred ---CCCC--CCcEEEEEcccccccccCCC----cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 192 ---PTAT--GGVLQVHIGDVFSPSEDASG----RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 192 ---~~~~--~~rv~v~~gDa~~~l~~~~~----~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.... ..+++++.||+++.+...+. .||+|++|.|.+... +.+++.++|+.+++.|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~-p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKN-PDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTC-GGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccC-hhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0011 24688999999998876543 799999999886543 478899999999999999999984
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=97.10 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=90.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-----c
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-----E 211 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-----~ 211 (345)
..+..+||++|||+|..+..+.+.+ ++.+++++|+++ +++. ++++++.+|+.+.- .
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------------~~~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------------VGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------------TTEEEEESCTTSHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------------CcEEEEEcccccchhhhhhh
Confidence 3566799999999999999999874 668999999999 6421 36899999998752 1
Q ss_pred --cCCCcccEEEEcCCCCCCCCCCcc-------hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 212 --DASGRYAGIVVDLFSEGKVLPQLE-------EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 212 --~~~~~yD~Ii~D~f~~~~~p~~l~-------t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
..+++||+|+++............ ..++++.+.+.|+|||.+++....... .
T Consensus 82 ~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------------------~ 142 (180)
T 1ej0_A 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-------------------F 142 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-------------------H
T ss_pred ccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc-------------------H
Confidence 245789999997543211000000 158899999999999999988775543 3
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 038076 283 NSAIRALSEAFPGKVSWK 300 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~~~ 300 (345)
..+...+++.|. .+.+.
T Consensus 143 ~~~~~~~~~~~~-~~~~~ 159 (180)
T 1ej0_A 143 DEYLREIRSLFT-KVKVR 159 (180)
T ss_dssp HHHHHHHHHHEE-EEEEE
T ss_pred HHHHHHHHHhhh-hEEee
Confidence 456677777787 55543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=106.83 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+++.. ..+++++|+++.+++.|++.+.... ..+++++.+|+.++. ..+++||+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~-~~~~~fD~ 149 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-------KRVRNYFCCGLQDFT-PEPDSYDV 149 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-------GGEEEEEECCGGGCC-CCSSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-------CceEEEEEcChhhcC-CCCCCEEE
Confidence 57899999999999999888754 5799999999999999999875221 346899999987753 34568999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+++..-. .++.. ...++++.+++.|+|||.+++..
T Consensus 150 v~~~~~l~-~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 150 IWIQWVIG-HLTDQ-HLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp EEEESCGG-GSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcchhh-hCCHH-HHHHHHHHHHHhcCCCeEEEEEE
Confidence 99863211 11111 12478999999999999998854
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=107.50 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=83.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|..+..+.+. +.+|++||+++.+++.|++.+... +.+++++.+|+.+... .++||+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~~~--~~~fD~ 187 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE--------NLNISTALYDINAANI--QENYDF 187 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--------TCCEEEEECCGGGCCC--CSCEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc--------CCceEEEEeccccccc--cCCccE
Confidence 6789999999999999999876 569999999999999999987532 2279999999988643 789999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++...-. ..+ .-...++++.+++.|+|||.+++...
T Consensus 188 i~~~~~~~-~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 188 IVSTVVFM-FLN-RERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp EEECSSGG-GSC-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEccchh-hCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99854221 111 12345799999999999999766544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=110.47 Aligned_cols=105 Identities=15% Similarity=0.045 Sum_probs=83.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..++.+||+||||+|.++..+.+..+ ..+|+++|+++++++.|++.+.... -++++++.+|+.+.+. ..++
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-------~~~v~~~~~d~~~~~~-~~~~ 144 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-------IENVIFVCGDGYYGVP-EFSP 144 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCCG-GGCC
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCCeEEEECChhhccc-cCCC
Confidence 34678999999999999999998766 4789999999999999999874322 2359999999998654 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||+|+++.... .++ +.+.+.|+|||++++.+...
T Consensus 145 fD~Iv~~~~~~-~~~---------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 145 YDVIFVTVGVD-EVP---------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp EEEEEECSBBS-CCC---------HHHHHHEEEEEEEEEEBCBG
T ss_pred eEEEEEcCCHH-HHH---------HHHHHhcCCCcEEEEEECCC
Confidence 99999975332 111 56788999999999987654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=101.80 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=83.1
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+||+||||+|..+..+.+. +.+++++|+++.+++.|++.+... +.+++++.+|+.+. ...+++||+|++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~-~~~~~~fD~v~~ 100 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK--------GVKITTVQSNLADF-DIVADAWEGIVS 100 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH--------TCCEEEECCBTTTB-SCCTTTCSEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc--------CCceEEEEcChhhc-CCCcCCccEEEE
Confidence 9999999999999998875 579999999999999999987421 23799999999875 234578999998
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.. . .. ..-...++++.+++.|+|||.+++.......
T Consensus 101 ~~-~--~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 101 IF-C--HL-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp EC-C--CC-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred Eh-h--cC-CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 42 2 11 1113467899999999999999998876544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=110.53 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+.......++++||+||||+|.++..+.+. +..+|++||+++ +++.|++.+.... ..++++++.+|+.
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~------~~~~i~~~~~d~~ 123 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK------LEDTITLIKGKIE 123 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT------CTTTEEEEESCTT
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC------CCCcEEEEEeeHH
Confidence 4344443333456789999999999999998875 557999999997 8999998774322 1368999999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
++ ....++||+|+++.... .....-.-.+++..+++.|+|||+++
T Consensus 124 ~~-~~~~~~~D~Ivs~~~~~-~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 124 EV-HLPVEKVDVIISEWMGY-FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TS-CCSCSCEEEEEECCCBT-TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred Hh-cCCCCcEEEEEEcCchh-hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 85 33457899999864211 11111233568999999999999987
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=101.83 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc---ccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS---EDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l---~~~~~ 215 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++.. +++++.+|..+.. ...+.
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAG-------------AGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTC-------------SSCEEECCHHHHHTTCSCCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhc-------------ccccchhhHHhhcccccccCC
Confidence 35689999999999999999876 679999999999999999871 3567888888762 22456
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+|++...-. .-...++++.+++.|+|||.+++.......
T Consensus 116 ~fD~v~~~~~l~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 116 DYDLICANFALL-----HQDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp CEEEEEEESCCC-----SSCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred CccEEEECchhh-----hhhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 699999854332 112358999999999999999998776543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=104.82 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+++. ..+++++|+++.+++.|++++.... .+++++++.+|..+... .+++||
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~-~~~~~D 160 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN------LGKNVKFFNVDFKDAEV-PEGIFH 160 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT------CCTTEEEECSCTTTSCC-CTTCBS
T ss_pred CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC------CCCcEEEEEcChhhccc-CCCccc
Confidence 35679999999999999999987 6899999999999999999874221 13679999999988641 246899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++|..+ ..++++.+.+.|+|||.+++.....
T Consensus 161 ~v~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 161 AAFVDVRE---------PWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp EEEECSSC---------GGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred EEEECCcC---------HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 99986432 1357899999999999999877643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=113.49 Aligned_cols=107 Identities=13% Similarity=-0.008 Sum_probs=84.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
++++||+|| |+|.++..+.+..+..+|++||+||.+++.|+++..... -.+++++.+|+.+.+.. ..++||
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-------~~~v~~~~~D~~~~l~~~~~~~fD 243 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-------YEDIEIFTFDLRKPLPDYALHKFD 243 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-------CCCEEEECCCTTSCCCTTTSSCBS
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCCEEEEEChhhhhchhhccCCcc
Confidence 467999999 999999999887777899999999999999999874221 12799999999996543 356899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCc-EEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNG-RFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG-vlvvn~~~ 259 (345)
+|++|..-.. . ...++++.+.+.|+||| ++++.+..
T Consensus 244 ~Vi~~~p~~~---~--~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 244 TFITDPPETL---E--AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp EEEECCCSSH---H--HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred EEEECCCCch---H--HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9999853211 1 13789999999999999 44666654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=106.44 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=84.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc--
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY-- 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y-- 217 (345)
++.+||+||||+|.++..+.+. |+.+|++||+++.+++.|+++...... ..+++++.+|+.+.+. ++|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l------~~~v~~~~~D~~~~~~---~~f~~ 192 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV------SDRFFVRKGEFLEPFK---EKFAS 192 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC------TTSEEEEESSTTGGGG---GGTTT
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEEECcchhhcc---cccCC
Confidence 4578999999999999999988 899999999999999999998743221 3479999999998754 478
Q ss_pred -cEEEEcCCCCCC---CCC---Cc---------chHHHHHHHH-hccCCCcEEEEEec
Q 038076 218 -AGIVVDLFSEGK---VLP---QL---------EEVATWLKLK-DRLMPNGRFMVNCG 258 (345)
Q Consensus 218 -D~Ii~D~f~~~~---~p~---~l---------~t~ef~~~~~-~~L~pgGvlvvn~~ 258 (345)
|+|+++.+-... ... +- ...++++.+. +.|+|||.+++.+.
T Consensus 193 ~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 193 IEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp CCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 999997422110 000 00 0127899999 99999999998654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-11 Score=107.11 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=83.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++.+... +.+++++.+|+.++.. +++||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~~~--~~~fD~ 104 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ--------GLKPRLACQDISNLNI--NRKFDL 104 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT--------TCCCEEECCCGGGCCC--SCCEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc--------CCCeEEEecccccCCc--cCCceE
Confidence 5689999999999999998876 578999999999999999987422 2378999999988632 378999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|++....-.+.+..-...++++.+++.|+|||.+++.+...
T Consensus 105 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 99842010112211234678999999999999999877643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=112.20 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=86.8
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+.......++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+..... .++++++.+|+.
T Consensus 51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~------~~~v~~~~~d~~ 122 (376)
T 3r0q_C 51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNL------DHIVEVIEGSVE 122 (376)
T ss_dssp HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTC------TTTEEEEESCGG
T ss_pred HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCC------CCeEEEEECchh
Confidence 3344433333356789999999999999999876 44599999999 999999988753322 467999999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.. +++||+|+++.... .....-.-..+++.+.+.|+|||++++
T Consensus 123 ~~~~--~~~~D~Iv~~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 123 DISL--PEKVDVIISEWMGY-FLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp GCCC--SSCEEEEEECCCBT-TBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred hcCc--CCcceEEEEcChhh-cccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 8642 38999999965321 111222345689999999999999975
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=108.28 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+.+..+ ..+|+++|+++.+++.+++++.... -++++++.+|+.++.. ..++|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-------~~~v~~~~~D~~~~~~-~~~~f 188 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-------VLNVILFHSSSLHIGE-LNVEF 188 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-------CCSEEEESSCGGGGGG-GCCCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-------CCeEEEEECChhhccc-ccccC
Confidence 4567999999999999999998764 5899999999999999998874221 2369999999998743 35689
Q ss_pred cEEEEcCCCCC-C-C---CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-K-V---LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~-~---p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|+...+ + + |... ...++++.+.+.|+|||.+++...+...
T Consensus 189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~ 251 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 251 (315)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 99999976432 1 1 1110 1258899999999999999886655443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=108.03 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=85.8
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.++.+||+||||+|..+..+.+.+ +.+++++|+++.+++.|++...... ..++++++.+|+.+. ...+++
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~-~~~~~~ 150 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG------LADNITVKYGSFLEI-PCEDNS 150 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT------CTTTEEEEECCTTSC-SSCTTC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEEcCcccC-CCCCCC
Confidence 34567899999999999999998865 4699999999999999998763221 136899999999874 334678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|++...-. .++. ..++++++++.|+|||.+++....
T Consensus 151 fD~v~~~~~l~-~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 151 YDFIWSQDAFL-HSPD---KLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp EEEEEEESCGG-GCSC---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeEEEecchhh-hcCC---HHHHHHHHHHHcCCCeEEEEEEec
Confidence 99999742111 1222 478999999999999999887543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=105.63 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||++|||+|.++..+++. .|..+++++|+++.+++.|++++... . ...++++++.+|+.+.. ..+++
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-----~~~~~v~~~~~d~~~~~-~~~~~ 171 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-----QPPDNWRLVVSDLADSE-LPDGS 171 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-----SCCTTEEEECSCGGGCC-CCTTC
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCCcEEEEECchHhcC-CCCCc
Confidence 45679999999999999999885 56789999999999999999987311 0 00257999999998862 23578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||+|++|..+. .++++.+.+.|+|||.+++.+...
T Consensus 172 ~D~v~~~~~~~---------~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 172 VDRAVLDMLAP---------WEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEEEEEESSCG---------GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred eeEEEECCcCH---------HHHHHHHHHhCCCCCEEEEEeCCH
Confidence 99999975421 267999999999999999987643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=114.09 Aligned_cols=118 Identities=12% Similarity=-0.037 Sum_probs=88.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||++|||+|+++..+++. ...+|++||++|.+++.|++++..... .+.+++++.+|+.+++.. .++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~~ 284 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHL 284 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhCC
Confidence 45679999999999999998874 335999999999999999998864432 122899999999998754 256
Q ss_pred cccEEEEcCCCCC----CCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEG----KVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~----~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+|++|.+... .....+ .-.+++..+.+.|+|||++++.+.....
T Consensus 285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 336 (385)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 8999999965521 111111 1134677789999999999988775553
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=110.74 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=85.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+..|..+|+++|+++.+++.|++++... +.+.+++.+|+.++. +++||+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~~d~~~~~---~~~fD~ 264 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN--------GVEGEVFASNVFSEV---KGRFDM 264 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT--------TCCCEEEECSTTTTC---CSCEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--------CCCCEEEEccccccc---cCCeeE
Confidence 467999999999999999999888889999999999999999987532 234678999998864 578999
Q ss_pred EEEcCCCCCCCC-CCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVL-PQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p-~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++..-..... ..-...++++.+++.|+|||.+++-...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999643221110 0012367899999999999999876554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-10 Score=102.13 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=83.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+.+.. .+++++|+++.+++.|++.+.... -++++++.+|+.+. ...+++|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~-~~~~~~f 88 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG-------VENVRFQQGTAESL-PFPDDSF 88 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT-------CCSEEEEECBTTBC-CSCTTCE
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-------CCCeEEEecccccC-CCCCCcE
Confidence 3467899999999999999998764 499999999999999998774221 24799999999874 3456889
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++..... ..+ ...++++++++.|+|||.+++....
T Consensus 89 D~v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 89 DIITCRYAAH-HFS---DVRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp EEEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEECCchh-hcc---CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 9999863221 111 2367999999999999998875443
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=100.61 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=81.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++.+||+||||+|..+..+.+.. .+++++|+++.+++.|++.+... ++++++.+|+.+.+. ..++|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~---------~~v~~~~~d~~~~~~-~~~~f 135 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY---------NNIKLILGDGTLGYE-EEKPY 135 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC---------SSEEEEESCGGGCCG-GGCCE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc---------CCeEEEECCcccccc-cCCCc
Confidence 3456799999999999999998874 79999999999999999988521 279999999988433 35789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|+++.... ++. +.+.+.|+|||.+++.+....
T Consensus 136 D~v~~~~~~~-----~~~-----~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 136 DRVVVWATAP-----TLL-----CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp EEEEESSBBS-----SCC-----HHHHHTEEEEEEEEEEECSSS
T ss_pred cEEEECCcHH-----HHH-----HHHHHHcCCCcEEEEEEcCCC
Confidence 9999864321 221 368889999999999876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-11 Score=106.06 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=77.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~y 217 (345)
.++.+||+||||+|.++..+.+. +.+|+++|+++.+++.|++.. ++++++.+|+.+.+... +++|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~~d~~~~~~~~~~~~f 112 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA------------PHADVYEWNGKGELPAGLGAPF 112 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC------------TTSEEEECCSCSSCCTTCCCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC------------CCceEEEcchhhccCCcCCCCE
Confidence 45789999999999999999876 579999999999999999972 36899999997666555 6899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|++.. . ..++++.+++.|+|||.++
T Consensus 113 D~v~~~~----~------~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 113 GLIVSRR----G------PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEEEES----C------CSGGGGGHHHHEEEEEEEE
T ss_pred EEEEeCC----C------HHHHHHHHHHHcCCCcEEE
Confidence 9999861 1 1256788999999999998
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-11 Score=110.07 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=81.2
Q ss_pred CCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCC---CCCCCCCCCCc----------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLS---DLEKPTATGGV---------------- 198 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~---~~~~~~~~~~r---------------- 198 (345)
++.+||++|||+|.++..+.+. .+..+|+++|+|+.+++.|+++.... .. ..+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL------TARELERREQSERFGKPSY 124 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH------HHHHHHHHHHHHHHCCHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc------cccchhhhhhhhhcccccc
Confidence 4678999999999999999887 67789999999999999999876422 10 012
Q ss_pred ---------EE-------------EEEccccccccc----CCCcccEEEEcCCCCCCC-CC----CcchHHHHHHHHhcc
Q 038076 199 ---------LQ-------------VHIGDVFSPSED----ASGRYAGIVVDLFSEGKV-LP----QLEEVATWLKLKDRL 247 (345)
Q Consensus 199 ---------v~-------------v~~gDa~~~l~~----~~~~yD~Ii~D~f~~~~~-p~----~l~t~ef~~~~~~~L 247 (345)
++ ++.+|..+.... ..++||+|+++..-.... .. .-.-..+++.+.+.|
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L 204 (250)
T 1o9g_A 125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 204 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence 55 999999886531 345899999974221100 00 012347899999999
Q ss_pred CCCcEEEE
Q 038076 248 MPNGRFMV 255 (345)
Q Consensus 248 ~pgGvlvv 255 (345)
+|||++++
T Consensus 205 kpgG~l~~ 212 (250)
T 1o9g_A 205 PAHAVIAV 212 (250)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99999998
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-10 Score=104.95 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=86.1
Q ss_pred CCCCEEEEeecc---cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--c----
Q 038076 140 PNGPIAIYGLGG---GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--S---- 210 (345)
Q Consensus 140 ~p~~VLiIG~G~---G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l---- 210 (345)
...+||+||||+ |.+...+.+..|+.+|++||+||.|++.|++.+.. .++++++.+|.++. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---------~~~v~~~~~D~~~~~~~~~~~ 147 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---------DPNTAVFTADVRDPEYILNHP 147 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---------CTTEEEEECCTTCHHHHHHSH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---------CCCeEEEEeeCCCchhhhccc
Confidence 347899999999 98887777778999999999999999999998741 36899999999863 1
Q ss_pred ---cc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 ---ED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ---~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.. ...+||+|++-..-+ .++.. ....+++++++.|+|||.+++.....+
T Consensus 148 ~~~~~~d~~~~d~v~~~~vlh-~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 148 DVRRMIDFSRPAAIMLVGMLH-YLSPD-VVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHHHCCTTSCCEEEETTTGG-GSCTT-THHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred hhhccCCCCCCEEEEEechhh-hCCcH-HHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 01 125899999743221 23333 357899999999999999998876553
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-11 Score=109.30 Aligned_cols=116 Identities=7% Similarity=0.042 Sum_probs=84.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~ 216 (345)
.++.+||+||||+|..+..+.+. +.+|+++|+++.+++.|++....... ....+++.+..+|+.+... ..+++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~ 130 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRK---EPAFDKWVIEEANWLTLDKDVPAGDG 130 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTT---SHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhccc---ccccceeeEeecChhhCccccccCCC
Confidence 45689999999999999999876 45999999999999999876521100 0113578899999887531 24679
Q ss_pred ccEEEEcCCCCCCCCC----CcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLP----QLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~----~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|++....-.+++. .-....+++++++.|+|||.+++...+
T Consensus 131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999984111112222 112467999999999999999988754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=103.10 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=83.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++.+. . ..++++++.+|+.+. ...+++|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~-------~~~~~~~~~~d~~~~-~~~~~~f 105 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIA-G-------VDRKVQVVQADARAI-PLPDESV 105 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTT-T-------SCTTEEEEESCTTSC-CSCTTCE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh-c-------cCCceEEEEcccccC-CCCCCCe
Confidence 356789999999999999998875 5799999999999999999872 1 146899999999775 3346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+|++...-. ..+ ...++++++++.|+|||.+++..
T Consensus 106 D~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 106 HGVIVVHLWH-LVP---DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp EEEEEESCGG-GCT---THHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCchh-hcC---CHHHHHHHHHHHCCCCcEEEEEe
Confidence 9999843211 111 24679999999999999998873
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-10 Score=99.12 Aligned_cols=124 Identities=14% Similarity=0.004 Sum_probs=87.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP--SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---- 211 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---- 211 (345)
+.+..+||+||||+|.++..+.+..| +.+|++||++|.. . .++++++.+|+.+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-------~~~v~~~~~d~~~~~~~~~~ 81 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-------IPNVYFIQGEIGKDNMNNIK 81 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-------CTTCEEEECCTTTTSSCCC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-------CCCceEEEccccchhhhhhc
Confidence 34567899999999999999998877 6899999999931 1 2468899999987530
Q ss_pred --------------------cCCCcccEEEEcCCCCCC-C--CCCcc----hHHHHHHHHhccCCCcEEEEEecCCCCCC
Q 038076 212 --------------------DASGRYAGIVVDLFSEGK-V--LPQLE----EVATWLKLKDRLMPNGRFMVNCGGIDGVS 264 (345)
Q Consensus 212 --------------------~~~~~yD~Ii~D~f~~~~-~--p~~l~----t~ef~~~~~~~L~pgGvlvvn~~~~~~~~ 264 (345)
-.+.+||+|++|...... . ..+.. ..++++.+.+.|+|||.+++.++....
T Consensus 82 ~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~-- 159 (201)
T 2plw_A 82 NINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ-- 159 (201)
T ss_dssp ----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT--
T ss_pred cccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC--
Confidence 134689999998532211 0 00100 124788899999999999987765432
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEE
Q 038076 265 DMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW 299 (345)
Q Consensus 265 ~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~ 299 (345)
...+...+++.|. .+.+
T Consensus 160 -----------------~~~l~~~l~~~f~-~v~~ 176 (201)
T 2plw_A 160 -----------------TNNLKTYLKGMFQ-LVHT 176 (201)
T ss_dssp -----------------HHHHHHHHHTTEE-EEEE
T ss_pred -----------------HHHHHHHHHHHHh-eEEE
Confidence 3456677777777 5554
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-10 Score=108.26 Aligned_cols=110 Identities=6% Similarity=0.032 Sum_probs=84.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+++||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++++...+ ..+|++++.+|..+.-...++.||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~p~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS------GSERIHGHGANLLDRDVPFPTGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT------TGGGEEEEECCCCSSSCCCCCCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC------cccceEEEEccccccCCCCCCCcCE
Confidence 568999999999999999999999999999999 999999999875332 1368999999998741012378999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++-..-. ..+. -....+++++++.|+|||.+++.-.
T Consensus 252 v~~~~vlh-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 252 VWMSQFLD-CFSE-EEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp EEEESCST-TSCH-HHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEechhh-hCCH-HHHHHHHHHHHHhcCCCcEEEEEee
Confidence 99743221 1111 1234789999999999999877543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=110.58 Aligned_cols=117 Identities=11% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCC-CCCCCCcEEEEEccccccc-----c
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEK-PTATGGVLQVHIGDVFSPS-----E 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~-~~~~~~rv~v~~gDa~~~l-----~ 211 (345)
.++.+||+||||+|..+..+.+.. |+.+|+++|+++.+++.|++++....... +....++++++.+|+.+.. .
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999998875 67899999999999999998752100000 0001368999999998752 2
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..+++||+|++...-. ..+ ...++++++++.|+|||.+++....
T Consensus 162 ~~~~~fD~V~~~~~l~-~~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCN-LST---NKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCTTCEEEEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchh-cCC---CHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2467999999864221 112 2468999999999999999886443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=93.01 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=75.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~ 215 (345)
.+..+||++|||+|..+..+.+. .|..+|++||++|.+++...+... ..+++.++.+|++.... ...+
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~---------~r~nv~~i~~Da~~~~~~~~~~~ 145 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ---------RRPNIFPLLADARFPQSYKSVVE 145 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH---------HCTTEEEEECCTTCGGGTTTTCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh---------hcCCeEEEEcccccchhhhcccc
Confidence 46689999999999999998876 457899999999988643222111 02469999999986421 2356
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|++|+.. | .....+...+++.|+|||.+++.+-.
T Consensus 146 ~~D~I~~d~a~----~--~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 146 NVDVLYVDIAQ----P--DQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp CEEEEEECCCC----T--THHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ceEEEEecCCC----h--hHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 89999998643 1 12233455667799999999987643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=114.05 Aligned_cols=116 Identities=12% Similarity=0.053 Sum_probs=90.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+++..++ .+|+++|+++.+++.++++..-.. -. ++++.+|+.++....+++|
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-------~~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-------AP-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-------CC-CEEECSCHHHHHHHHCSCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------Ce-EEEEECCHHHhhhhccccC
Confidence 45679999999999999999987654 799999999999999998874221 23 8999999998754346789
Q ss_pred cEEEEcCCCCCC-C----CCCcc-------------hHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQLE-------------EVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~l~-------------t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|+...+. . |.... ..++++.+.+.|+|||.+++...+...
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 999999876431 1 22111 277899999999999999987665544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=109.59 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+.......++.+||+||||+|.++..+++. +..+|++||+++ +++.|++....... .++++++.+|+.
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l------~~~v~~~~~d~~ 109 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL------TDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC------TTTEEEEESCTT
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC------CCcEEEEEcchh
Confidence 4444433333346789999999999999998875 567999999997 77889887643221 368999999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
++- .+++||+|+++.... .... -...+.+..+++.|+|||+++++.
T Consensus 110 ~~~--~~~~~D~Ivs~~~~~-~~~~-~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 110 EVS--LPEQVDIIISEPMGY-MLFN-ERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TCC--CSSCEEEEEECCCBT-TBTT-TSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hCC--CCCceeEEEEeCchh-cCCh-HHHHHHHHHHHhhcCCCeEEEEec
Confidence 862 346899999864321 1111 123567888999999999998543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=106.63 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=81.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+..+ +|+++|+||.+++.|++++.... -. ++++.+|+.+.+ ..++||
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~-------~~-v~~~~~d~~~~~--~~~~fD 186 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG-------VR-PRFLEGSLEAAL--PFGPFD 186 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT-------CC-CEEEESCHHHHG--GGCCEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC-------Cc-EEEEECChhhcC--cCCCCC
Confidence 4578999999999999999887533 99999999999999999875332 12 899999998864 246899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.... .-.+++..+++.|+|||.+++...
T Consensus 187 ~Vv~n~~~~-------~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 187 LLVANLYAE-------LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp EEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCcHH-------HHHHHHHHHHHHcCCCCEEEEEee
Confidence 999864221 235789999999999999998654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=102.11 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=80.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+.+..+ .+|+++|+++.+++.|++.+.... -++++++.+|+..-+. ...+|
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~-~~~~f 159 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG-------VKNVHVILGDGSKGFP-PKAPY 159 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCCG-GGCCE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEECCcccCCC-CCCCc
Confidence 34667999999999999999998876 899999999999999999874222 2359999999844332 23469
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|+++.... ++ .+.+.+.|+|||.+++.+....
T Consensus 160 D~Ii~~~~~~-----~~-----~~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 160 DVIIVTAGAP-----KI-----PEPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp EEEEECSBBS-----SC-----CHHHHHTEEEEEEEEEEECSSS
T ss_pred cEEEECCcHH-----HH-----HHHHHHhcCCCcEEEEEEecCC
Confidence 9999864321 11 1367889999999999887544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.6e-10 Score=100.21 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=63.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccC----C
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDA----S 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~----~ 214 (345)
++.+||++|||+|.++..+.+..|+.+|++||++|.+++.|++....... ..+++++.+|+.+ ++... +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL------SDLIKVVKVPQKTLLMDALKEESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC------CccEEEEEcchhhhhhhhhhcccC
Confidence 46789999999999998888777789999999999999999998753321 3579999999877 23221 2
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
++||+|+++.
T Consensus 139 ~~fD~i~~np 148 (254)
T 2h00_A 139 IIYDFCMCNP 148 (254)
T ss_dssp CCBSEEEECC
T ss_pred CcccEEEECC
Confidence 6899999984
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-10 Score=104.46 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+ ++.+|+++|+++.+++.|++.+ ++++++.+|+.++- .+++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~~d~~~~~--~~~~fD 119 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY------------PHLHFDVADARNFR--VDKPLD 119 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC------------TTSCEEECCTTTCC--CSSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC------------CCCEEEECChhhCC--cCCCcC
Confidence 4567999999999999999987 6789999999999999999875 24778999998853 257899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...-. .++ ...++++++++.|+|||.+++......
T Consensus 120 ~v~~~~~l~-~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 120 AVFSNAMLH-WVK---EPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcchhh-hCc---CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 999843211 111 235789999999999999998876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=103.32 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=83.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-----PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE- 211 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-----p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~- 211 (345)
..+..+||+||||+|..+..+.+.. |..+|+++|+++.+++.|++++..... .....++++++.+|+.+...
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP--ELLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCG--GGGSSTTEEEEECCGGGCCHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCc--cccccCCEEEEECChHhcccc
Confidence 4566899999999999999998875 467999999999999999988742110 00003579999999988531
Q ss_pred --cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 --DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 --~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
...++||+|+++.... + +++.+.+.|+|||++++.+..
T Consensus 156 ~~~~~~~fD~I~~~~~~~-----~-----~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASAS-----E-----LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHHCCEEEEEECSBBS-----S-----CCHHHHHHEEEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchH-----H-----HHHHHHHhcCCCcEEEEEEcc
Confidence 2356899999875332 1 247788999999999999875
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=111.45 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=87.9
Q ss_pred cchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 125 TGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
...|.+++..-....+.+.||+||||+|.++..+++. ...+|++||.++ +++.|++......+ ..+++++.+
T Consensus 68 t~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~------~~~i~~i~~ 139 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGL------EDRVHVLPG 139 (376)
T ss_dssp HHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTC------TTTEEEEES
T ss_pred HHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCC------CceEEEEee
Confidence 4456665543322335788999999999999877764 557999999997 78889887654332 578999999
Q ss_pred ccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 205 DVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 205 Da~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|..+. ..++++|+|++..... ....+-.-..++....+.|+|||+++
T Consensus 140 ~~~~~--~lpe~~DvivsE~~~~-~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 140 PVETV--ELPEQVDAIVSEWMGY-GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CTTTC--CCSSCEEEEECCCCBT-TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred eeeee--cCCccccEEEeecccc-cccccchhhhHHHHHHhhCCCCceEC
Confidence 99886 3568999999876543 22233344567888889999999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=109.00 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=84.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-----ccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-----EDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-----~~~~ 214 (345)
++.+||+||||+|..+..+.+. +..+++++|+++.+++.|++.+.............+++++.+|+.+.. ...+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5789999999999999988873 678999999999999999987631100000001347999999998862 2234
Q ss_pred CcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
++||+|++...-+ ....+. ....+++++++.|+|||.+++.+.+.
T Consensus 113 ~~fD~V~~~~~l~-~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 113 MCFDICSCQFVCH-YSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CCEEEEEEETCGG-GGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCEEEEEEecchh-hccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 5899999843211 110111 23589999999999999999887643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-10 Score=106.28 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=84.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|..+..+++.+|+.+++++|+ |.+++.|++++.-.. ..+|++++.+|..+.+ +..||+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~---p~~~D~ 238 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG------LSGRAQVVVGSFFDPL---PAGAGG 238 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT------CTTTEEEEECCTTSCC---CCSCSE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC------cCcCeEEecCCCCCCC---CCCCcE
Confidence 457999999999999999999999999999999 999999999874322 1468999999997432 338999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-..-. +.+. -...++++++++.|+|||.+++.-...+
T Consensus 239 v~~~~vlh-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 239 YVLSAVLH-DWDD-LSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp EEEESCGG-GSCH-HHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred EEEehhhc-cCCH-HHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 99832111 1111 1236799999999999999988654433
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=101.61 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=82.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..+..+||+||||+|..+..+.+.. +..+|+++|+++.+++.|++++...... ....++++++.+|+..... ...+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~~~~-~~~~ 151 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT--LLSSGRVQLVVGDGRMGYA-EEAP 151 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH--HHHTSSEEEEESCGGGCCG-GGCC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc--ccCCCcEEEEECCcccCcc-cCCC
Confidence 3567899999999999999998774 5579999999999999999876421000 0002479999999986432 3568
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+|+++.... + +++.+.+.|+|||.+++.+....
T Consensus 152 fD~i~~~~~~~-----~-----~~~~~~~~LkpgG~lv~~~~~~~ 186 (226)
T 1i1n_A 152 YDAIHVGAAAP-----V-----VPQALIDQLKPGGRLILPVGPAG 186 (226)
T ss_dssp EEEEEECSBBS-----S-----CCHHHHHTEEEEEEEEEEESCTT
T ss_pred cCEEEECCchH-----H-----HHHHHHHhcCCCcEEEEEEecCC
Confidence 99999875331 1 23678899999999999887543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=108.00 Aligned_cols=117 Identities=10% Similarity=0.121 Sum_probs=84.9
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
|.+.+.......++++||+||||+|.++..+.+. +..+|++||+++ +++.|++.+.... ..++++++.+|+.
T Consensus 26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~------~~~~i~~~~~d~~ 97 (328)
T 1g6q_1 26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG------FSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT------CTTTEEEEESCTT
T ss_pred HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHH-HHHHHHHHHHHcC------CCCCEEEEECchh
Confidence 4444432222345789999999999999998875 557999999995 8999998874322 1468999999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+. ....++||+|+++..... ....-.-.+++..+++.|+|||.++
T Consensus 98 ~~-~~~~~~~D~Ivs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 98 DV-HLPFPKVDIIISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TS-CCSSSCEEEEEECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hc-cCCCCcccEEEEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEE
Confidence 85 223478999999753221 1122233578899999999999997
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=96.52 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|..+..+.+.. .+++++|+++.+++.+++.. ++++++.+| +...+++||
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~------------~~v~~~~~d----~~~~~~~~D 77 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF------------DSVITLSDP----KEIPDNSVD 77 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC------------TTSEEESSG----GGSCTTCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC------------CCcEEEeCC----CCCCCCceE
Confidence 456799999999999999998765 39999999999999999971 368899999 233568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++...-. ..+ ...++++++++.|+|||.+++..+....
T Consensus 78 ~v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 78 FILFANSFH-DMD---DKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EEEEESCST-TCS---CHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEEEccchh-ccc---CHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 999853221 111 2468999999999999999988665543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=100.93 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=82.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
..+..+||+||||+|..+..+.+..+ ..+|+++|+++.+++.|++++..... .....++++++.+|+.+.+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~v~~~~~d~~~~~~ 159 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR--SMLDSGQLLIVEGDGRKGYP 159 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH--HHHHHTSEEEEESCGGGCCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCc--cccCCCceEEEECCcccCCC
Confidence 34567999999999999999887644 36999999999999999987641100 00002479999999988443
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
..++||+|+++.... + +.+.+.+.|+|||.+++.+....
T Consensus 160 -~~~~fD~I~~~~~~~-----~-----~~~~~~~~LkpgG~lvi~~~~~~ 198 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAP-----D-----TPTELINQLASGGRLIVPVGPDG 198 (227)
T ss_dssp -GGCSEEEEEECSCBS-----S-----CCHHHHHTEEEEEEEEEEESCSS
T ss_pred -cCCCccEEEECCchH-----H-----HHHHHHHHhcCCCEEEEEEecCC
Confidence 246899999875432 1 22678899999999999987543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-10 Score=108.09 Aligned_cols=114 Identities=12% Similarity=-0.010 Sum_probs=88.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
+.++||++|||+|.++..+++. ..+|++||+++.+++.|++++..... ++++++.+|+.+++.. .+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~-------~~~~~~~~d~~~~~~~~~~~~~~ 279 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL-------GNVRVLEANAFDLLRRLEKEGER 279 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC-------TTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-------CCceEEECCHHHHHHHHHhcCCC
Confidence 5679999999999999999886 67999999999999999998864431 2499999999998753 2678
Q ss_pred ccEEEEcCCCCCCCCCCc-----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQL-----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+|++|.+.-..-.... .-.+++..+.+.|+|||++++.+.+...
T Consensus 280 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 330 (382)
T 1wxx_A 280 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM 330 (382)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred eeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 999999864421111111 1246888999999999999887765544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=103.88 Aligned_cols=107 Identities=9% Similarity=-0.041 Sum_probs=85.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+|++||||+|.++..+.+..|..+|+++|+||..++.|+++...... ..+++++.+|+.+-+.. .++||
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl------~~~i~~~~~d~l~~l~~-~~~~D 86 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL------KEKIQVRLANGLAAFEE-TDQVS 86 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC------TTTEEEEECSGGGGCCG-GGCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEECchhhhccc-CcCCC
Confidence 455789999999999999999887888999999999999999998754332 35899999999876642 23799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++-. +.. -.-.+++..+.++|+++|.++++-.
T Consensus 87 ~IviaG-----~Gg-~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 87 VITIAG-----MGG-RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEEE-----ECH-HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEEEcC-----CCh-HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 998731 111 1246889999999999999998766
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-10 Score=99.65 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=88.3
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-----c
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-----D 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-----~ 212 (345)
+.+..+||+||||+|..+..+.+. ..+|++||++|. .. .++++++.+|+.+.-. .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-----------~~-------~~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-----------EE-------IAGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-----------CC-------CTTCEEEECCTTSSSHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-----------cc-------CCCeEEEEccccCHHHHHHHHH
Confidence 356789999999999999999876 789999999974 11 3579999999887421 0
Q ss_pred -C----CCcccEEEEcCCCCCC-C--CCCc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchH
Q 038076 213 -A----SGRYAGIVVDLFSEGK-V--LPQL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVW 280 (345)
Q Consensus 213 -~----~~~yD~Ii~D~f~~~~-~--p~~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~ 280 (345)
. .++||+|++|...... . ..+. .....++.+.+.|+|||.+++-++....
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~------------------ 144 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM------------------ 144 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH------------------
T ss_pred HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC------------------
Confidence 0 1489999999743211 0 0010 1135678889999999999988875442
Q ss_pred HHHHHHHHHHHHCCCCEEEE
Q 038076 281 MHNSAIRALSEAFPGKVSWK 300 (345)
Q Consensus 281 ~~~~~~~~l~~~F~~~v~~~ 300 (345)
...+...+++.|. .|.+.
T Consensus 145 -~~~~~~~l~~~F~-~v~~~ 162 (191)
T 3dou_A 145 -TNDFIAIWRKNFS-SYKIS 162 (191)
T ss_dssp -HHHHHHHHGGGEE-EEEEE
T ss_pred -HHHHHHHHHHhcC-EEEEE
Confidence 4577888888998 66643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=92.57 Aligned_cols=101 Identities=6% Similarity=-0.050 Sum_probs=75.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+.. +|++||+|+.+++. . ++++++.+|+.+.+. +++||
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~---------~~~~~~~~d~~~~~~--~~~fD 80 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H---------RGGNLVRADLLCSIN--QESVD 80 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C---------SSSCEEECSTTTTBC--GGGCS
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c---------cCCeEEECChhhhcc--cCCCC
Confidence 356799999999999999998764 99999999999997 1 357899999988653 38999
Q ss_pred EEEEcCCCCCCCCC-----CcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLP-----QLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~-----~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++..-...... .....++++.+.+.| |||.+++......
T Consensus 81 ~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 81 VVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp EEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred EEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 99996422111000 112356888888888 9999988775443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-10 Score=97.95 Aligned_cols=102 Identities=16% Similarity=0.042 Sum_probs=80.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+ +..+++++|+++.+++.|++.+ ++++++.+|+.+. ...+++||+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~~d~~~~-~~~~~~fD~ 98 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------------PEATWVRAWGEAL-PFPGESFDV 98 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------------TTSEEECCCTTSC-CSCSSCEEE
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------------CCcEEEEcccccC-CCCCCcEEE
Confidence 6789999999999998876 2239999999999999999976 2478899998874 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++...-. ..+ ...++++++++.|+|||.+++.......
T Consensus 99 v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 99 VLLFTTLE-FVE---DVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EEEESCTT-TCS---CHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EEEcChhh-hcC---CHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99853221 122 2468999999999999999998876553
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-10 Score=109.85 Aligned_cols=113 Identities=12% Similarity=-0.015 Sum_probs=82.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|..+..+++. +.+|++||++|.+++.|++++..... + .+++.+|+.+++....++||
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~------~--~~~~~~D~~~~l~~~~~~fD 282 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGL------R--VDIRHGEALPTLRGLEGPFH 282 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC------C--CEEEESCHHHHHHTCCCCEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCC------C--CcEEEccHHHHHHHhcCCCC
Confidence 34789999999999999999875 45599999999999999998854321 1 24669999998865444599
Q ss_pred EEEEcCCCCCCCCCCc-----chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQL-----EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++|...-..-.... .-.++++.+.+.|+|||.+++...+..
T Consensus 283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999864311000111 124788889999999999985444443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-10 Score=106.94 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++++...+ ..+|++++.+|..+.-...++.||+|
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~D~v 252 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD------LGGRVEFFEKNLLDARNFEGGAADVV 252 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT------CGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC------CCCceEEEeCCcccCcccCCCCccEE
Confidence 78999999999999999999999999999999 999999998874322 14689999999987532245679999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++-..-+ ..+. -....+++++++.|+|||.+++.-.
T Consensus 253 ~~~~vlh-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 253 MLNDCLH-YFDA-REAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EEESCGG-GSCH-HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEecccc-cCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9832111 1111 1226799999999999999887643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=110.91 Aligned_cols=110 Identities=10% Similarity=-0.076 Sum_probs=86.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC--------CCCCcEEEEEcccccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT--------ATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~--------~~~~rv~v~~gDa~~~l~ 211 (345)
++.+||++|||+|..+..+++..+..+|+++|+||..++.++++.......... ..-.+++++.+|+.+++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 578999999999999999998877789999999999999999887533000000 001239999999999876
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
...++||+|++|.|.. ..++++.+.+.|+|||++.+.+
T Consensus 127 ~~~~~fD~I~lDP~~~--------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPFGS--------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Confidence 5567899999986532 2589999999999999998876
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=96.94 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=87.2
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCC---------CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE-Eccc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPS---------LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH-IGDV 206 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~---------~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~-~gDa 206 (345)
.+.+..+||+||||+|.++..+.+..+. .+|+++|+++.. . .++++++ .+|.
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~----------~~~~~~~~~~d~ 80 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P----------LEGATFLCPADV 80 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C----------CTTCEEECSCCT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c----------CCCCeEEEeccC
Confidence 3456789999999999999999988664 799999999831 1 2457888 8887
Q ss_pred ccccc-------cCCCcccEEEEcCCCCCCCCCCcch--------HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCC
Q 038076 207 FSPSE-------DASGRYAGIVVDLFSEGKVLPQLEE--------VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAA 271 (345)
Q Consensus 207 ~~~l~-------~~~~~yD~Ii~D~f~~~~~p~~l~t--------~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~ 271 (345)
.+.-. ..+++||+|++|...... ..+... ..+++.+.+.|+|||.+++..+....
T Consensus 81 ~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--------- 150 (196)
T 2nyu_A 81 TDPRTSQRILEVLPGRRADVILSDMAPNAT-GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--------- 150 (196)
T ss_dssp TSHHHHHHHHHHSGGGCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG---------
T ss_pred CCHHHHHHHHHhcCCCCCcEEEeCCCCCCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc---------
Confidence 65321 123589999997522111 011111 36889999999999999998764432
Q ss_pred CCCCccchHHHHHHHHHHHHHCCCCEEEE
Q 038076 272 RPKSMNDVWMHNSAIRALSEAFPGKVSWK 300 (345)
Q Consensus 272 ~~~~~d~~~~~~~~~~~l~~~F~~~v~~~ 300 (345)
...+...+++.|. .+.+.
T Consensus 151 ----------~~~~~~~l~~~f~-~v~~~ 168 (196)
T 2nyu_A 151 ----------SRRLQRRLTEEFQ-NVRII 168 (196)
T ss_dssp ----------GHHHHHHHHHHEE-EEEEE
T ss_pred ----------HHHHHHHHHHHhc-ceEEE
Confidence 3456667778887 55543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=105.64 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+++.+|+.+++++|+ |.+++.|++++...+ ..++++++.+|..+.+ +..||
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------l~~~v~~~~~d~~~~~---p~~~D 270 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG------LADRCEILPGDFFETI---PDGAD 270 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT------CTTTEEEEECCTTTCC---CSSCS
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC------cCCceEEeccCCCCCC---CCCce
Confidence 4568999999999999999999999999999999 999999999874322 1468999999998432 33899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++-..-. ..+ .-...++++++++.|+|||.+++.-.
T Consensus 271 ~v~~~~vlh-~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 271 VYLIKHVLH-DWD-DDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp EEEEESCGG-GSC-HHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EEEhhhhhc-cCC-HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999742211 111 11223689999999999999887543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=107.08 Aligned_cols=104 Identities=10% Similarity=-0.066 Sum_probs=86.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||++|||.|.++..+++. +..+|+++|+||..++.++++...... ..+++++.+|++++.. ...|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v------~~~v~~~~~D~~~~~~--~~~~ 193 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV------EDRMSAYNMDNRDFPG--ENIA 193 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC------TTTEEEECSCTTTCCC--CSCE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEeCcHHHhcc--ccCC
Confidence 356789999999999999988875 557999999999999999998866543 5689999999999864 5789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|+++.+. .+.+|+..+.+.|+|||++.+...
T Consensus 194 D~Vi~~~p~--------~~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 194 DRILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCCC--------cHHHHHHHHHHHcCCCCEEEEEee
Confidence 999986422 345789999999999999876543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=109.06 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=83.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++.. ++ +..+|++||+||.+++.|++++..... .++++++.+|+.+++ ++||
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l------~~~v~~~~~D~~~~~----~~fD 260 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKL------EHKIIPILSDVREVD----VKGN 260 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEESCGGGCC----CCEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECChHHhc----CCCc
Confidence 4678999999999999988 65 578999999999999999998864432 357999999999986 7899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++|... ...++++.+.+.|+|||.+++......
T Consensus 261 ~Vi~dpP~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 261 RVIMNLPK--------FAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEEECCTT--------TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EEEECCcH--------hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 99997422 123789999999999999887655433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=100.16 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHH----HHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKV----RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A----~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.+..+||+||||+|.++..+.+.+|+.+|++||+++.+++.+ ++..... .-++++++++|+.+. ....
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~-------~~~~v~~~~~d~~~l-~~~~ 97 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG-------GLPNLLYLWATAERL-PPLS 97 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT-------CCTTEEEEECCSTTC-CSCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc-------CCCceEEEecchhhC-CCCC
Confidence 456789999999999999999999999999999999988853 2222111 135799999999984 3334
Q ss_pred CcccEEEEcCCCCC----CCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEG----KVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~----~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+. |.|++...... .++. ..++++++++.|+|||.+++.+.
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-CEEEEEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEec
Confidence 45 87774331110 0011 15789999999999999998654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=99.36 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=76.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~~~ 216 (345)
..+..+||+||||+|.++..+.+. +.+|++||+++.|++.|++..... .+.....|... .....+++
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~----------~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR----------CVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS----------CCEEEECCTTSCCCGGGTTC
T ss_pred CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc----------cceeeeeecccccccccCCC
Confidence 346679999999999999999875 579999999999999999987421 23333333221 01123578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+|+++..-. .++. -....+++.+.+.| |||.+++.+....
T Consensus 111 fD~Vv~~~~l~-~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 111 FDFVLNDRLIN-RFTT-EEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp CSEEEEESCGG-GSCH-HHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred ccEEEEhhhhH-hCCH-HHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 99999864221 1111 12346899999999 9999999876443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=108.99 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=88.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
+.++||++|||+|+++..+++. +..+|++||+++.+++.|++++..... +++++++.+|+.+++.. ..++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~------~~~v~~~~~d~~~~~~~~~~~~~~ 289 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV------EDRMKFIVGSAFEEMEKLQKKGEK 289 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC------GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CccceEEECCHHHHHHHHHhhCCC
Confidence 6789999999999999999875 456999999999999999998864431 23899999999988653 3678
Q ss_pred ccEEEEcCCCCCCCCCC-----cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQ-----LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~-----l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+|++|.......... -...+++..+.+.|+|||++++...+...
T Consensus 290 fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 340 (396)
T 2as0_A 290 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 340 (396)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 99999986432110111 11346888999999999988877665543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=105.69 Aligned_cols=110 Identities=11% Similarity=-0.111 Sum_probs=77.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECC-HHHHHHH---HHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEID-EILIDKV---RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEid-p~vi~~A---~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.++.+||+||||+|..+..+.+..|+.+|++||++ +.|++.| ++...... -++++++.+|+.++-....
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-------~~~v~~~~~d~~~l~~~~~ 95 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-------LSNVVFVIAAAESLPFELK 95 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-------CSSEEEECCBTTBCCGGGT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-------CCCeEEEEcCHHHhhhhcc
Confidence 35678999999999999999877788999999999 7787776 66543221 3579999999988722123
Q ss_pred CcccEEEEcCCCCCCC-CCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKV-LPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~-p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|.|.+....+... .......++++++++.|+|||.+++
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4556665532111000 0001125689999999999999988
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=105.58 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=83.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+.+|+.+++++|+ |.+++.|++.+.... ..++++++.+|..+.+ +..||
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~---~~~~D 250 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG------LADRVTVAEGDFFKPL---PVTAD 250 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT------CTTTEEEEECCTTSCC---SCCEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC------CCCceEEEeCCCCCcC---CCCCC
Confidence 3567999999999999999999999999999999 999999998874222 1358999999998743 33599
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++...-. ..+. -...++++++++.|+|||.+++.-.
T Consensus 251 ~v~~~~vl~-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLL-NWSD-EDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEecccc-CCCH-HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999843221 1111 1124799999999999998887654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-10 Score=102.70 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=80.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..|+.+++++|+++.+++.|++.. ++++++.+|+.+. ...+++||
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~~d~~~~-~~~~~~fD 150 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------PQVTFCVASSHRL-PFSDTSMD 150 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------TTSEEEECCTTSC-SBCTTCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------------CCcEEEEcchhhC-CCCCCcee
Confidence 3567999999999999999998877889999999999999999875 2478999998764 33457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++.. . + .+++++.+.|+|||.+++......
T Consensus 151 ~v~~~~-~----~------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIY-A----P------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEES-C----C------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeC-C----h------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 999631 1 1 258899999999999998876554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-11 Score=108.30 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=80.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|..+..+.+. +.+|+++|++|.+++.|++.+..... .++++++.+|+.++. .+++||+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~--~~~~~D~ 147 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGI------ADKIEFICGDFLLLA--SFLKADV 147 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------GGGEEEEESCHHHHG--GGCCCSE
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC------CcCeEEEECChHHhc--ccCCCCE
Confidence 5789999999999999999975 48999999999999999988753221 258999999999976 4579999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++|..-... . .....+..+++.|+|||.+++..
T Consensus 148 v~~~~~~~~~-~---~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 148 VFLSPPWGGP-D---YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp EEECCCCSSG-G---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred EEECCCcCCc-c---hhhhHHHHHHhhcCCcceeHHHH
Confidence 9997533211 0 01114456788999999977654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-10 Score=107.59 Aligned_cols=118 Identities=14% Similarity=-0.024 Sum_probs=89.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||++|||+|.++..+++. ...+|++||+++.+++.|++++..... .+++++++.+|+.+++.. .++
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl-----~~~~v~~~~~D~~~~~~~~~~~~~ 292 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKL-----DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC-----CGGGEEEEESCHHHHHHHHHHTTC
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHhcCC
Confidence 46789999999999999999875 356999999999999999998864321 012799999999998753 257
Q ss_pred cccEEEEcCCCCCC----CCCC-cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGK----VLPQ-LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~----~p~~-l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+|++|.+.... .... -.-.+++..+.+.|+|||++++.+.....
T Consensus 293 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 344 (396)
T 3c0k_A 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM 344 (396)
T ss_dssp CEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred CCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 89999999643211 1111 12357889999999999999887765543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.4e-10 Score=117.18 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=90.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+++. ...+|++||+|+.+++.|++++..... .+.+++++.+|+.+++....++||
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl-----~~~~v~~i~~D~~~~l~~~~~~fD 611 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGL-----TGRAHRLIQADCLAWLREANEQFD 611 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC-----CSTTEEEEESCHHHHHHHCCCCEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEEecCHHHHHHhcCCCcc
Confidence 35789999999999999988863 346799999999999999998865432 135899999999999877778999
Q ss_pred EEEEcCCCCC--CCCCC-c----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEG--KVLPQ-L----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~--~~p~~-l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++|.+.-. .-... + .-.+++..+.+.|+|||++++.+.....
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~ 662 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF 662 (703)
T ss_dssp EEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC
T ss_pred EEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 9999975421 00000 1 1245688889999999999987765443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-10 Score=101.52 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=80.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+. +.+++++|+++.+++.|++... .+ ++.+|+.+. ...+++||
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-----------~~--~~~~d~~~~-~~~~~~fD 116 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----------KN--VVEAKAEDL-PFPSGAFE 116 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----------SC--EEECCTTSC-CSCTTCEE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-----------CC--EEECcHHHC-CCCCCCEE
Confidence 36789999999999999998875 5799999999999999999753 11 788898774 33467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++..... ..... ..++++++++.|+|||.+++.+.+.
T Consensus 117 ~v~~~~~~~-~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 117 AVLALGDVL-SYVEN--KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEECSSHH-HHCSC--HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEcchhh-hcccc--HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999742110 11111 5789999999999999999887654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=108.72 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=89.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||++|||+|..+..+++..+ ..+|+++|+++.+++.++++..-.. -++++++.+|+.++....+++||
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-------~~nv~~~~~D~~~~~~~~~~~fD 189 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-------ISNVALTHFDGRVFGAAVPEMFD 189 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-------CCSEEEECCCSTTHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEeCCHHHhhhhccccCC
Confidence 567999999999999999998764 5899999999999999998763211 23699999999987433467899
Q ss_pred EEEEcCCCCCC-----CCCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGK-----VLPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~-----~p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.|++|+...+. .|... ...++++.+.+.|+|||.+++...+...
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~ 251 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ 251 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence 99999865321 12111 1357889999999999999987655443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-10 Score=110.11 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=87.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCc-EEEEEcccccccc-cCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV-LQVHIGDVFSPSE-DASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~r-v~v~~gDa~~~l~-~~~~~ 216 (345)
+..+||++++|+|.++..+++..++ .+|++||+||..++.++++...... +.+ ++++.+|+.++++ ...++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl------~~~~v~v~~~Da~~~l~~~~~~~ 125 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI------PEDRYEIHGMEANFFLRKEWGFG 125 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC------CGGGEEEECSCHHHHHHSCCSSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCceEEEEeCCHHHHHHHhhCCC
Confidence 3578999999999999998886554 7999999999999999999875542 345 9999999999987 65678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+|++|.|.. ..++++.+.+.|+|||++.+.+.
T Consensus 126 fD~V~lDP~g~--------~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 126 FDYVDLDPFGT--------PVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEEEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEECCCcC--------HHHHHHHHHHHhCCCCEEEEEec
Confidence 99999997431 14689999999999999988773
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=96.66 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=79.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~y 217 (345)
.++.+||+||||+|..+..+.+. + .+++++|+++.+++.+++.+. +++.+|+.++. ...+++|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~--------------~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD--------------HVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS--------------EEEESCTTTCCCCSCTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC--------------cEEEcchhhcCCCCCCCcc
Confidence 46789999999999999999876 4 899999999999999988641 57888987752 2245789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+|++...-. ..+ ...++++.+++.|+|||.+++.....
T Consensus 95 D~v~~~~~l~-~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 95 DCVIFGDVLE-HLF---DPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp EEEEEESCGG-GSS---CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred CEEEECChhh-hcC---CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999842111 111 23589999999999999999987653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.3e-10 Score=100.62 Aligned_cols=107 Identities=9% Similarity=-0.046 Sum_probs=86.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+|++||||+|.++..+.+..|..+|+++|+||..++.|+++...... ..+++++.+|+.+.+. ..++||
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl------~~~I~~~~gD~l~~~~-~~~~~D 92 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL------TSKIDVRLANGLSAFE-EADNID 92 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC------TTTEEEEECSGGGGCC-GGGCCC
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhhccc-cccccC
Confidence 456789999999999999999887778999999999999999998754332 4689999999998764 234799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++..-. . -.-.+++....++|+++|.++++-.
T Consensus 93 ~IviaGmG-----g-~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 93 TITICGMG-----G-RLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp EEEEEEEC-----H-HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEEEeCCc-----h-HHHHHHHHHHHHHhCcCCEEEEECC
Confidence 99863211 1 1346789999999999999988764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-10 Score=110.26 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=89.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+++..+ ..+|+++|+|+..++.++++..-.. -.++.++.+|+.++....+++|
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-------~~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-------VSNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-------CSSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEeCCHHHhhhhccccC
Confidence 4567999999999999999887654 4799999999999999998764222 2369999999998754446889
Q ss_pred cEEEEcCCCCCC-CCCC-----------------cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-VLPQ-----------------LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~p~~-----------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|+...+. .... -...++++.+.+.|+|||.++....+...
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 999999865321 1100 01237899999999999999987665554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=104.15 Aligned_cols=118 Identities=12% Similarity=-0.001 Sum_probs=81.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-------------CCCC---------CCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-------------KPTA---------TGG 197 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-------------~~~~---------~~~ 197 (345)
++.+||+||||+|.++..+.+..+ .+|+++|+++.+++.|++.+...... +... ...
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 457899999999999988776533 59999999999999999987522100 0000 001
Q ss_pred cE-EEEEcccccccccCC---CcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 198 VL-QVHIGDVFSPSEDAS---GRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 198 rv-~v~~gDa~~~l~~~~---~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++ +++.+|+.+.....+ ++||+|++...-. .++++. .-..+++++++.|+|||.+++....
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD-AACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhh-hhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 27 899999988643233 7899999743211 112221 2357899999999999999887643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-10 Score=105.27 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=75.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-----cc--c
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-----SE--D 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-----l~--~ 212 (345)
+..+||+||||+|.....+++. ...+|+++|+++.+++.|+++..-.... ......+++++++|...- +. .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~-~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSG-IKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhcccc-ccccccccchhhhhcccchhhhhhhccc
Confidence 3578999999999755444442 4579999999999999999876311100 000001366778877211 11 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.+++||+|++-..- .+.........+++++++.|+|||.+++...+.
T Consensus 126 ~~~~FD~V~~~~~l-hy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 126 YFGKFNIIDWQFAI-HYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CSSCEEEEEEESCG-GGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCCCeeEEEECchH-HHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 35789999874211 111111123689999999999999999877643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-10 Score=102.98 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=97.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE--EcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH--IGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~--~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+.+. .+|++||++| +...+++. ..+. ...+.++.++ .+|+.++ .+++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~----~~~~~~v~~~~~~~D~~~l---~~~~ 140 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRIT----ESYGWNIVKFKSRVDIHTL---PVER 140 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCC----CBTTGGGEEEECSCCTTTS---CCCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhh----hccCCCeEEEecccCHhHC---CCCC
Confidence 45679999999999999988875 6899999999 43322221 1110 0112268888 8999885 3678
Q ss_pred ccEEEEcCCCCCCCCCCcc----hHHHHHHHHhccCCCc--EEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHH
Q 038076 217 YAGIVVDLFSEGKVLPQLE----EVATWLKLKDRLMPNG--RFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALS 290 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~----t~ef~~~~~~~L~pgG--vlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~ 290 (345)
||+|++|.. . ..+.+.. +.++++.+.+.|+||| .+++.+..+.. ......+..++
T Consensus 141 fD~V~sd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~-----------------~~~~~~l~~l~ 201 (265)
T 2oxt_A 141 TDVIMCDVG-E-SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYS-----------------VEVMERLSVMQ 201 (265)
T ss_dssp CSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS-----------------HHHHHHHHHHH
T ss_pred CcEEEEeCc-c-cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC-----------------hhHHHHHHHHH
Confidence 999999865 2 1111111 2237888999999999 99998876332 22446778889
Q ss_pred HHCCCCEEEEEecCC--CCceEEEEeCCCCC
Q 038076 291 EAFPGKVSWKRMPER--NGENFLALTGLLPD 319 (345)
Q Consensus 291 ~~F~~~v~~~~~~~~--~~~n~v~~a~~~p~ 319 (345)
+.|. .+.+.+ +.. ...-.++++....+
T Consensus 202 ~~f~-~v~~~k-~~sR~~s~E~y~v~~~~~~ 230 (265)
T 2oxt_A 202 RKWG-GGLVRN-PYSRNSTHEMYFTSRAGGN 230 (265)
T ss_dssp HHHC-CEEECC-TTSCTTCCCEEEESSCCSC
T ss_pred HHcC-CEEEEE-ecccCCCccEEEEecCCCC
Confidence 9998 565554 431 22334555554443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-09 Score=105.66 Aligned_cols=117 Identities=11% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~ 216 (345)
.+..+||++|||+|..+..+.+..++ .+|+++|+++..++.+++++.-.. -++++++.+|+.++... .+++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-------~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-------IKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-------CCSEEEECSCTTCCSSSSCSSC
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-------CCcEEEEEcChhhcchhhccCC
Confidence 45678999999999999999988776 899999999999999998864221 24699999999887432 2368
Q ss_pred ccEEEEcCCCCCC-C----CCC--------c-----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGK-V----LPQ--------L-----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~-~----p~~--------l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+|++|+...+. . |.. + ...++++.+.+.|+|||.+++...+...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 9999999865432 1 110 0 1257899999999999999987665543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=100.05 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=78.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+ ++.+|+++|++|.+++.|++. ++++++++|+.++ ...+++||
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~~d~~~~-~~~~~~fD 96 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH-------------PQVEWFTGYAENL-ALPDKSVD 96 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC-------------TTEEEECCCTTSC-CSCTTCBS
T ss_pred CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc-------------cCCEEEECchhhC-CCCCCCEe
Confidence 5678999999999999999986 678999999999999977553 2689999999874 34568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++...-. .++ ...++++++++.|+ ||.+++..+..
T Consensus 97 ~v~~~~~l~-~~~---~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 97 GVISILAIH-HFS---HLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp EEEEESCGG-GCS---SHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred EEEEcchHh-hcc---CHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 999853221 111 23689999999999 99766655543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=100.66 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=85.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+..|..+|+++|+||..++.|+++...... ..+++++.+|+.+.+.. .++||
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl------~~~I~v~~gD~l~~~~~-~~~~D 92 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL------TEQIDVRKGNGLAVIEK-KDAID 92 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC------TTTEEEEECSGGGGCCG-GGCCC
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEecchhhccCc-ccccc
Confidence 456799999999999999999887778999999999999999998754332 45899999999987642 33699
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++-.-. . -.-.+++....++|+++|.++++-.
T Consensus 93 ~IviagmG-----g-~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 93 TIVIAGMG-----G-TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp EEEEEEEC-----H-HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEEEeCCc-----h-HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 99872111 1 1346789999999999999988754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=101.72 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=82.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++.+.... ..+|++++.+|+.+. ....+|
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~---~~~~~D 258 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG------VADRMRGIAVDIYKE---SYPEAD 258 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT------CTTTEEEEECCTTTS---CCCCCS
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC------CCCCEEEEeCccccC---CCCCCC
Confidence 4568999999999999999999999999999999 999999998874222 135799999999875 223349
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++...-. ..+. -...++++++++.|+|||.+++.-
T Consensus 259 ~v~~~~vlh-~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 259 AVLFCRILY-SANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEechhc-cCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999842211 1111 123678999999999999986654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-10 Score=102.96 Aligned_cols=113 Identities=14% Similarity=0.029 Sum_probs=75.4
Q ss_pred CCCCEEEEeecccHHHHH----HHHhCCCCEE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--
Q 038076 140 PNGPIAIYGLGGGTAAHL----MLDLWPSLKL--EGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-- 211 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~----l~~~~p~~~v--~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-- 211 (345)
++.+||+||||+|.++.. +...+|+.+| ++||++++|++.|++...-... ...-++++..+|+.++..
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN----LENVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS----CTTEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC----CCcceEEEEecchhhhhhhh
Confidence 456899999999976543 3444577755 9999999999999988632110 001234455666655431
Q ss_pred ---cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 212 ---DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 212 ---~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
..+++||+|++-.--. .++ .-..+++++++.|+|||.+++.....
T Consensus 128 ~~~~~~~~fD~V~~~~~l~-~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQMLY-YVK---DIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HTTTCCCCEEEEEEESCGG-GCS---CHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred ccccCCCceeEEEEeeeee-ecC---CHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 1367899999732111 122 13568999999999999998875543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=105.60 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=79.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----------cCCCCCCCCCCCCCcEEEEEcccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY----------FGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~----------f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
+.+..+||+||||+|.++..+....+..++++||++|.++++|++. +++. .++++++.+|+.
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--------~~rVefi~GD~~ 242 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--------HAEYTLERGDFL 242 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--------CCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--------CCCeEEEECccc
Confidence 3567889999999999999998777766799999999999999863 2321 358999999998
Q ss_pred cccccC-CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 208 SPSEDA-SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 208 ~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+.--.. -..+|+|++..+- .. -...+.+.++.+.|+|||.+++.
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~~---F~--pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNFA---FG--PEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp SHHHHHHHHTCSEEEECCTT---CC--HHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCccccccCCccEEEEcccc---cC--chHHHHHHHHHHcCCCCcEEEEe
Confidence 742111 1479999985321 11 12345678889999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=103.37 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+..+.+.+|+.+++++|++ .+++.|++.+...+. .++++++.+|..+. ..++.||
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~--~~~~~~D 234 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV------ASRYHTIAGSAFEV--DYGNDYD 234 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC------GGGEEEEESCTTTS--CCCSCEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC------CcceEEEecccccC--CCCCCCc
Confidence 45689999999999999999999999999999999 999999988642211 35799999999874 2234599
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++-..-. ..+. -...++++++++.|+|||.+++.-...
T Consensus 235 ~v~~~~~l~-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 235 LVLLPNFLH-HFDV-ATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEEEcchhc-cCCH-HHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 999832111 1110 123588999999999999877654443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-10 Score=99.64 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=76.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||.|.++..+....|+.+++++|+|+.+++++++++...+. ..++++ .|...- ..+++||
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~------~~~v~~--~d~~~~--~~~~~~D 117 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT------TIKYRF--LNKESD--VYKGTYD 117 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC------SSEEEE--ECCHHH--HTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC------CccEEE--eccccc--CCCCCcC
Confidence 568999999999999999998888999999999999999999999853321 124444 666553 3678899
Q ss_pred EEEEcCCCCCCCCCCcchH--HHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEV--ATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~--ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+.- .+ -|+... ..+..+.+.|+|||+++ ++.
T Consensus 118 vVLa~-----k~-LHlL~~~~~al~~v~~~L~pggvfI-Sfp 152 (200)
T 3fzg_A 118 VVFLL-----KM-LPVLKQQDVNILDFLQLFHTQNFVI-SFP 152 (200)
T ss_dssp EEEEE-----TC-HHHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred hhhHh-----hH-HHhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence 99862 11 111111 23448999999999986 444
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=106.87 Aligned_cols=109 Identities=12% Similarity=-0.004 Sum_probs=79.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHH-------HHhcCCCCCCCCCCCCCcEEEEEcccccc-
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKV-------RDYFGLSDLEKPTATGGVLQVHIGDVFSP- 209 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A-------~~~f~~~~~~~~~~~~~rv~v~~gDa~~~- 209 (345)
..+..+||+||||+|.++..+++..+..+|++||+++.+++.| ++.+..... .-.+++++++|+..-
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl-----~~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM-----RLNNVEFSLKKSFVDN 314 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB-----CCCCEEEEESSCSTTC
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC-----CCCceEEEEcCccccc
Confidence 3466899999999999999999877767999999999999999 776532110 025799999876531
Q ss_pred --cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 210 --SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 210 --l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+....++||+|++..+.. .+ .-.+.++++.+.|+|||.+++.
T Consensus 315 ~~~~~~~~~FDvIvvn~~l~---~~--d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFLF---DE--DLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHHHHHGGGCSEEEECCTTC---CH--HHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccCCCCEEEEeCccc---cc--cHHHHHHHHHHhCCCCeEEEEe
Confidence 111246899999853221 11 2245788999999999998874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-09 Score=94.97 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---------
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--------- 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--------- 209 (345)
.++++||++|+| ..+.++.+. ++.+|+.||.|++..+.|+++|...+. ....+++++++|+.+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~----~~~~~I~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPP----AEGTEVNIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCC----CTTCEEEEEECCCSSBCGGGCBSSS
T ss_pred hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCCceEEEEeCchhhhcccccccc
Confidence 467899999985 566666663 479999999999999999999953321 0035899999997653
Q ss_pred -----cc-------c--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE-Ee
Q 038076 210 -----SE-------D--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV-NC 257 (345)
Q Consensus 210 -----l~-------~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv-n~ 257 (345)
+. . ..++||+||+|+.. ..+++..+.++|+|||++++ |+
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEeCC
Confidence 11 1 23789999999732 23677778899999999987 54
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-09 Score=102.99 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=88.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||++|||+|..+..+.+..++.+|+++|+++..++.+++.+... +-+++++.+|+.++... .+++|
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~--------g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL--------GMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------TCCCEEEECCTTCTHHHHTTCCE
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc--------CCCeEEEeCchhhchhhcccCCC
Confidence 3567999999999999999999887789999999999999999887422 12478999999886431 34789
Q ss_pred cEEEEcCCCCC-CC----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-KV----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|++..+ +. |... ...++++.+.+.|+|||.+++...+...
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 99999986543 11 1100 1147899999999999999987655443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=103.60 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++++.... ..++++++.+|..+.+ +..||
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~---~~~~D 251 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG------LSDRVDVVEGDFFEPL---PRKAD 251 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT------CTTTEEEEECCTTSCC---SSCEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC------CCCceEEEeCCCCCCC---CCCcc
Confidence 3567999999999999999999999999999999 999999998874222 1358999999998743 33599
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. ..+. -...++++++++.|+|||.+++.-..
T Consensus 252 ~v~~~~vl~-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFVLL-NWPD-HDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEccccc-CCCH-HHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999743221 1111 11247999999999999988876543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=104.22 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++.+.... ..++++++.+|..+. .+++||+|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~---~~~~~D~v~ 238 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL------AGERVSLVGGDMLQE---VPSNGDIYL 238 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH------HTTSEEEEESCTTTC---CCSSCSEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC------CCCcEEEecCCCCCC---CCCCCCEEE
Confidence 8999999999999999999999999999999 999999998863211 136899999999873 346799999
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+...-+. .+ .-...++++++++.|+|||.+++.-.
T Consensus 239 ~~~vl~~-~~-~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 239 LSRIIGD-LD-EAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp EESCGGG-CC-HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EchhccC-CC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 7432211 11 11224789999999999999887644
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=110.13 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|.++..+++ .+..+|++||+++ +++.|++......+ .++++++.+|+.++- .+++||
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl------~~~v~~~~~d~~~~~--~~~~fD 226 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNL------TDRIVVIPGKVEEVS--LPEQVD 226 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTC------TTTEEEEESCTTTCC--CSSCEE
T ss_pred cCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCC------CCcEEEEECchhhCc--cCCCeE
Confidence 4568999999999999998887 4678999999999 88999987643221 368999999998852 346899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|+++... +....-...+.+..+++.|+|||.+++..
T Consensus 227 ~Ivs~~~~--~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 227 IIISEPMG--YMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEECCCCH--HHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCch--HhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99985321 10011122456778899999999998543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=98.49 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHH------HHHHHHHhcCCCCCCCCCCCCCcEEEEEcc-cccc-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEI------LIDKVRDYFGLSDLEKPTATGGVLQVHIGD-VFSP- 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~------vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD-a~~~- 209 (345)
.++.+||+||||+|..+..+.+.. |..+++++|+++. +++.|++++.... ..++++++.+| ....
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP------LGDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST------TGGGEEEECSCCTTTCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC------CCCceEEEECChhhhcc
Confidence 466899999999999999999875 6689999999997 9999999875322 13689999998 2211
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+...+++||+|++...-. ..+. ...+++.+++.++|||.+++..+....
T Consensus 116 ~~~~~~~fD~v~~~~~l~-~~~~---~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLW-YFAS---ANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp GGGTTCCCSEEEEESCGG-GSSC---HHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred CCCCCCCEEEEEEccchh-hCCC---HHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 122457899999753221 1221 134666677777779999987765543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-10 Score=103.40 Aligned_cols=146 Identities=12% Similarity=-0.009 Sum_probs=96.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE--EcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH--IGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~--~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+++. .+|++||++| +...+++.. ... ...+.+++++ .+|+.++ .+++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~-~~~----~~~~~~v~~~~~~~D~~~l---~~~~ 148 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKP-RLV----ETFGWNLITFKSKVDVTKM---EPFQ 148 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCC-CCC----CCTTGGGEEEECSCCGGGC---CCCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhch-hhh----hhcCCCeEEEeccCcHhhC---CCCC
Confidence 45679999999999999998875 6899999999 533332211 110 0012378899 8999885 3678
Q ss_pred ccEEEEcCCCCCCCCCCcc----hHHHHHHHHhccCCCc--EEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHH
Q 038076 217 YAGIVVDLFSEGKVLPQLE----EVATWLKLKDRLMPNG--RFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALS 290 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~----t~ef~~~~~~~L~pgG--vlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~ 290 (345)
||+|++|.. . ..+.+.. +.++++.+.+.|+||| .+++.+..+.. ......++.++
T Consensus 149 fD~Vvsd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~-----------------~~~~~~l~~l~ 209 (276)
T 2wa2_A 149 ADTVLCDIG-E-SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYS-----------------CDVLEALMKMQ 209 (276)
T ss_dssp CSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCS-----------------HHHHHHHHHHH
T ss_pred cCEEEECCC-c-CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCc-----------------hhHHHHHHHHH
Confidence 999999865 2 1111111 2237888999999999 99988776332 22446677888
Q ss_pred HHCCCCEEEEEecC---CCCceEEEEeCCCC
Q 038076 291 EAFPGKVSWKRMPE---RNGENFLALTGLLP 318 (345)
Q Consensus 291 ~~F~~~v~~~~~~~---~~~~n~v~~a~~~p 318 (345)
+.|. .+.++ |. .....++++.....
T Consensus 210 ~~f~-~v~v~--P~~sR~~s~E~y~v~~~~~ 237 (276)
T 2wa2_A 210 ARFG-GGLIR--VPLSRNSTHEMYFVSGIKN 237 (276)
T ss_dssp HHHC-CEEEC--CTTSCTTCCCEEEESSCCC
T ss_pred HHcC-CEEEE--cCCCCCcchheEEecccCC
Confidence 8998 56654 42 12234455555443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=106.45 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCCCEEEEeec-------ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--
Q 038076 139 VPNGPIAIYGLG-------GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-- 209 (345)
Q Consensus 139 ~~p~~VLiIG~G-------~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-- 209 (345)
.++.+||+|||| +|.....+.+++|+.+|++||++|.+. .. .++++++++|+.+.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~----------~~rI~fv~GDa~dlpf 278 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD----------ELRIRTIQGDQNDAEF 278 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC----------BTTEEEEECCTTCHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc----------CCCcEEEEecccccch
Confidence 467899999999 566666666667999999999999972 11 46899999999873
Q ss_pred cc---cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 210 SE---DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 210 l~---~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+. ...++||+|++|... .. -....+|+++++.|||||++++.
T Consensus 279 ~~~l~~~d~sFDlVisdgsH--~~---~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 279 LDRIARRYGPFDIVIDDGSH--IN---AHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHHHHHCCEEEEEECSCC--CH---HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhcccCCccEEEECCcc--cc---hhHHHHHHHHHHhcCCCeEEEEE
Confidence 21 114789999987532 11 12357899999999999999985
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=103.42 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=88.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEEC----CHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEI----DEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEi----dp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~ 212 (345)
+.+..+||+||||+|..+..+++. .+|++||+ ++..++.+ .... ...++++++.+ |+..+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~----~~~~-----~~~~~v~~~~~~D~~~l--- 144 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI----PMST-----YGWNLVRLQSGVDVFFI--- 144 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC----CCCS-----TTGGGEEEECSCCTTTS---
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH----Hhhh-----cCCCCeEEEeccccccC---
Confidence 345679999999999999998875 47999999 45333211 1111 11367999999 98875
Q ss_pred CCCcccEEEEcCCCCCCC--CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHH
Q 038076 213 ASGRYAGIVVDLFSEGKV--LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALS 290 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~--p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~ 290 (345)
..++||+|++|....... ..+..+..++..+.+.|+|||.+++.+..... .....++..++
T Consensus 145 ~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~-----------------~~~~~~l~~l~ 207 (305)
T 2p41_A 145 PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM-----------------SSVIEKMEALQ 207 (305)
T ss_dssp CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS-----------------HHHHHHHHHHH
T ss_pred CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCC-----------------chHHHHHHHHH
Confidence 357899999986432110 01111224788899999999999998876543 23467778888
Q ss_pred HHCCCCEEE
Q 038076 291 EAFPGKVSW 299 (345)
Q Consensus 291 ~~F~~~v~~ 299 (345)
+.|. .+.+
T Consensus 208 ~~f~-~v~~ 215 (305)
T 2p41_A 208 RKHG-GALV 215 (305)
T ss_dssp HHHC-CEEE
T ss_pred HHcC-CEEE
Confidence 8998 4553
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=89.69 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+. +..+++++|+||.+++.|++.+... +-+++++.+|+.++ +.+||+
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~----~~~~D~ 115 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF--------KGKFKVFIGDVSEF----NSRVDI 115 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG--------TTSEEEEESCGGGC----CCCCSE
T ss_pred CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc--------CCCEEEEECchHHc----CCCCCE
Confidence 5678999999999999998875 3458999999999999999987532 12799999999885 358999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|++|..-... ..-...++++.+.+.| ||++++.
T Consensus 116 v~~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 116 VIMNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp EEECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEE
T ss_pred EEEcCCCccc--cCCchHHHHHHHHHhc--CcEEEEE
Confidence 9998643211 1123467889998888 6666544
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.7e-09 Score=96.95 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=80.8
Q ss_pred CCCCEEEEeecc---cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---cccC
Q 038076 140 PNGPIAIYGLGG---GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G~---G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~~ 213 (345)
..+++|+||||. |.+...+.+..|+.+|++||+||.|++.||+.+.-.. ..+++++++|.++. +...
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-------~~~~~~v~aD~~~~~~~l~~~ 150 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-------EGRTAYVEADMLDPASILDAP 150 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-------SSEEEEEECCTTCHHHHHTCH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-------CCcEEEEEecccChhhhhccc
Confidence 347899999995 4454444556899999999999999999999885221 35799999999985 1111
Q ss_pred --CCccc-----EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 214 --SGRYA-----GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 214 --~~~yD-----~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.+.|| .|++...-+ .++.+-.-.+.++.+++.|+|||.|++.....+.
T Consensus 151 ~~~~~~D~~~p~av~~~avLH-~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~ 205 (277)
T 3giw_A 151 ELRDTLDLTRPVALTVIAIVH-FVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF 205 (277)
T ss_dssp HHHTTCCTTSCCEEEEESCGG-GSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT
T ss_pred ccccccCcCCcchHHhhhhHh-cCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 24455 354432211 2333212257899999999999999998776653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=98.17 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=81.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++|++||||.|..+..+++.+|+.++++.|+ |.|++.|+++..... .+|++++.+|..+ .....+|+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-------~~rv~~~~gD~~~---~~~~~~D~ 247 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-------EEQIDFQEGDFFK---DPLPEADL 247 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------CCSEEEEESCTTT---SCCCCCSE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-------cCceeeecCcccc---CCCCCceE
Confidence 457899999999999999999999999999998 999999999886432 5799999999865 24567899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++--.-+. .++ -...+.++++++.|+|||.+++.=
T Consensus 248 ~~~~~vlh~-~~d-~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 248 YILARVLHD-WAD-GKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp EEEESSGGG-SCH-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEeeeeccc-CCH-HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 987321111 111 123578999999999999877653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-09 Score=90.22 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=71.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+. +..+|++||+||.+++.|++++. +++++.+|+.++ +++||+
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~------------~~~~~~~d~~~~----~~~~D~ 113 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------------GVNFMVADVSEI----SGKYDT 113 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------------TSEEEECCGGGC----CCCEEE
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC------------CCEEEECcHHHC----CCCeeE
Confidence 5679999999999999998875 55689999999999999999863 488999999885 378999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++|..-... ..-...++++.+.+.| |++++
T Consensus 114 v~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~ 144 (200)
T 1ne2_A 114 WIMNPPFGSV--VKHSDRAFIDKAFETS--MWIYS 144 (200)
T ss_dssp EEECCCC---------CHHHHHHHHHHE--EEEEE
T ss_pred EEECCCchhc--cCchhHHHHHHHHHhc--CcEEE
Confidence 9997533211 1112357899998888 44443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=94.44 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=77.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEEC-CHHHHHHHHHhcCC-----CCCCCCCCCCCcEEEEEccccccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEI-DEILIDKVRDYFGL-----SDLEKPTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEi-dp~vi~~A~~~f~~-----~~~~~~~~~~~rv~v~~gDa~~~l~~ 212 (345)
.+.++||+||||+|.++..+.+. +..+|+++|+ +|.+++.|+++... .... ....++++++..|..+....
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSE--TVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCEEEECCTTSCTHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc--cCCCCCeEEEEecCCCccHH
Confidence 45679999999999999988874 4459999999 99999999998722 1100 00014688885553332111
Q ss_pred -----CCCcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccC---C--CcEEEEEecC
Q 038076 213 -----ASGRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLM---P--NGRFMVNCGG 259 (345)
Q Consensus 213 -----~~~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~---p--gGvlvvn~~~ 259 (345)
..++||+|++ |+.... -....+++.+++.|+ | ||++++-+..
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~~-----~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSFH-----QAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSCG-----GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred HHhhccCCCCCEEEEeCcccCh-----HHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 3578999987 653321 124678999999999 9 9987765443
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-09 Score=99.40 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=77.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+++.+|+.+++++|+ |.+++ ++..... ...+|++++.+|..+.+ + +||
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~------~~~~~v~~~~~d~~~~~---p-~~D 249 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP------DVAGRWKVVEGDFLREV---P-HAD 249 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG------GGTTSEEEEECCTTTCC---C-CCS
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc------CCCCCeEEEecCCCCCC---C-CCc
Confidence 3567999999999999999999999999999999 66665 3333211 12578999999997432 3 899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-..-+ ..+ .....++++++++.|+|||.+++.-..
T Consensus 250 ~v~~~~vlh-~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 250 VHVLKRILH-NWG-DEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp EEEEESCGG-GSC-HHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred EEEEehhcc-CCC-HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999742111 111 112257999999999999999876443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.1e-09 Score=99.91 Aligned_cols=103 Identities=14% Similarity=-0.053 Sum_probs=77.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||++|||+|+++..+....+..+|+++|+|+.+++.|+++...... +++++++.+|+.+.. ...++|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl------~~~i~~~~~D~~~~~-~~~~~f 287 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV------LDKIKFIQGDATQLS-QYVDSV 287 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC------GGGCEEEECCGGGGG-GTCSCE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC------CCceEEEECChhhCC-cccCCc
Confidence 4567899999999999999999876656999999999999999998753321 357999999999863 345789
Q ss_pred cEEEEcCCCCCCC--CCCc--chHHHHHHHHhcc
Q 038076 218 AGIVVDLFSEGKV--LPQL--EEVATWLKLKDRL 247 (345)
Q Consensus 218 D~Ii~D~f~~~~~--p~~l--~t~ef~~~~~~~L 247 (345)
|+|++|..-+... ...+ .-.++++.+++.|
T Consensus 288 D~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 288 DFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred CEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 9999986433211 1111 1256788888888
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-09 Score=100.94 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=75.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCC--------C-CCC--------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKP--------T-ATG-------------- 196 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~--------~-~~~-------------- 196 (345)
++.+||+||||+|.... +....+..+|+++|+++.+++.|++++........ . ...
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56799999999999543 33333457999999999999999987642110000 0 000
Q ss_pred CcEEEEEcccccccc-----cCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEe
Q 038076 197 GVLQVHIGDVFSPSE-----DASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 197 ~rv~v~~gDa~~~l~-----~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..++++.+|+.+.+. ..+++||+|++-..-. .++..+ .-..+++++++.|+|||.+++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~-~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE-AVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhh-hhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 125677889887432 1246799999742111 111111 23578999999999999998853
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=107.29 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||+||||+|.++..+.+.. |..+|++||+++.+++.|++.+...... .....++++++++|+.+. ....++|
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA-kr~gl~nVefiqGDa~dL-p~~d~sF 797 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK-EACNVKSATLYDGSILEF-DSRLHDV 797 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT-TCSSCSEEEEEESCTTSC-CTTSCSC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch-hhcCCCceEEEECchHhC-CcccCCe
Confidence 367899999999999999999876 4579999999999999998854210000 001235899999999885 3356889
Q ss_pred cEEEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++.. +..++.. ..+++.+.+.|+|| .+++...
T Consensus 798 DlVV~~e-----VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 798 DIGTCLE-----VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp CEEEEES-----CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred eEEEEeC-----chhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9999832 2233332 34899999999999 6666553
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.82 E-value=9.1e-09 Score=91.59 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=76.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+. +++|+++.+++.|++. +++++.+|+.+. ...+++||+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--------------~~~~~~~d~~~~-~~~~~~fD~ 105 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--------------GVFVLKGTAENL-PLKDESFDF 105 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--------------TCEEEECBTTBC-CSCTTCEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--------------CCEEEEcccccC-CCCCCCeeE
Confidence 4789999999999999887643 9999999999999985 267889998774 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++...-. ..+ ...++++.+++.|+|||.+++......
T Consensus 106 v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 106 ALMVTTIC-FVD---DPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp EEEESCGG-GSS---CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEEcchHh-hcc---CHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 99853211 111 236799999999999999998876543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=101.00 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=79.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||++|||+|.++..+.+. ..+|++||+++.+++.|+++..... -. ++++.+|+.+++.. +|
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng-------l~-v~~~~~d~~~~~~~---~f 354 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN-------VD-AEFEVASDREVSVK---GF 354 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-------CC-EEEEECCTTTCCCT---TC
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-------Cc-EEEEECChHHcCcc---CC
Confidence 345689999999999999998875 5699999999999999999875332 13 99999999998642 89
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++|.... -...++++.++ .|+|+|++.+.+.
T Consensus 355 D~Vv~dPPr~------g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 355 DTVIVDPPRA------GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp SEEEECCCTT------CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred CEEEEcCCcc------chHHHHHHHHH-hcCCCcEEEEECC
Confidence 9999985432 12345666665 4999999988763
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=93.86 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=75.7
Q ss_pred CCCCEEEEeecccH----HHHHHHHhCC----CCEEEEEECCHHHHHHHHHhcC-------CC------------CCCCC
Q 038076 140 PNGPIAIYGLGGGT----AAHLMLDLWP----SLKLEGWEIDEILIDKVRDYFG-------LS------------DLEKP 192 (345)
Q Consensus 140 ~p~~VLiIG~G~G~----~~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~-------~~------------~~~~~ 192 (345)
++.+|+++|||+|. ++..+.+..+ +.+|+++|||+.+++.|++... ++ ...++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45689999999997 6666666534 4699999999999999998531 00 00000
Q ss_pred CC-----CCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 193 TA-----TGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 193 ~~-----~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+ -..++++..+|..+.--...++||+|+|--.- .+.. .-...+.++.+.+.|+|||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvl-iyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVM-IYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSG-GGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCch-HhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 01368999999887200114689999982100 0111 11236789999999999999986
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-09 Score=99.51 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=76.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCC-------------CC---------CCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKP-------------TA---------TGG 197 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~-------------~~---------~~~ 197 (345)
+..+||+||||+|..+..+... ...+|+++|++|.+++.|+++.......-. .. ...
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 4578999999999877655442 224799999999999999987642210000 00 011
Q ss_pred cEE-EEEcccccccc---cCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 198 VLQ-VHIGDVFSPSE---DASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 198 rv~-v~~gDa~~~l~---~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+++ ++.+|..+... ...++||+|++-..-. ++.... .-..+++++++.|||||.+++....
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~-~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME-CACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHH-HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 344 88999887421 1246899999743221 111111 1246899999999999999987543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=98.38 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=76.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|+++ ++++++.+|..+.+ +. ||
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~~---~~-~D 269 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------------SGIEHVGGDMFASV---PQ-GD 269 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------TTEEEEECCTTTCC---CC-EE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------------CCCEEEeCCcccCC---CC-CC
Confidence 4568999999999999999999999999999999 9999876541 46999999998732 23 99
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++-..-+ ..+. ....++++++++.|+|||.+++.
T Consensus 270 ~v~~~~~lh-~~~d-~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 270 AMILKAVCH-NWSD-EKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EEEEESSGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecccc-cCCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 999742211 1111 12237999999999999998875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-08 Score=98.25 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=79.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||++|||+|.++..+.+. ..+|+++|+++.+++.|+++..... -++++++.+|+.+++.. ..+
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~-------~~~v~f~~~d~~~~l~~~~~~~~ 355 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG-------LQNVTFYHENLEEDVTKQPWAKN 355 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCTTSCCSSSGGGTT
T ss_pred CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEECCHHHHhhhhhhhcC
Confidence 35678999999999999999875 6799999999999999999875332 24799999999997643 346
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++|....+ . .++++.+. .++|++++.+.+.
T Consensus 356 ~fD~Vv~dPPr~g------~-~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 356 GFDKVLLDPARAG------A-AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CCSEEEECCCTTC------C-HHHHHHHH-HHCCSEEEEEESC
T ss_pred CCCEEEECCCCcc------H-HHHHHHHH-hcCCCeEEEEECC
Confidence 8999999743321 2 25666665 4899999877654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=97.31 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+++.+|+.+++++|+ |.+++.|++ .++++++.+|..+.+ ++. |
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~---p~~-D 263 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-------------FSGVEHLGGDMFDGV---PKG-D 263 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------------CTTEEEEECCTTTCC---CCC-S
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-------------cCCCEEEecCCCCCC---CCC-C
Confidence 3467899999999999999999999999999999 999887653 257999999998743 223 9
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-..-+ ..+. -...++++++++.|+|||.+++.-..
T Consensus 264 ~v~~~~vlh-~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 264 AIFIKWICH-DWSD-EHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp EEEEESCGG-GBCH-HHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEEEechhh-cCCH-HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998743221 0111 12246899999999999998876443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-08 Score=92.00 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=61.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+++. +.+|++||+|+.+++.+++.+.... ..++++++.+|+.++ .-..||
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~D~~~~---~~~~fD 95 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP------VASKLQVLVGDVLKT---DLPFFD 95 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST------TGGGEEEEESCTTTS---CCCCCS
T ss_pred CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEEcceecc---cchhhc
Confidence 45678999999999999999986 4699999999999999999875321 135899999999875 234799
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
+|++++
T Consensus 96 ~vv~nl 101 (285)
T 1zq9_A 96 TCVANL 101 (285)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999864
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=97.17 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|+++ ++++++.+|..+.+ + .||
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~~---p-~~D 248 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------------NNLTYVGGDMFTSI---P-NAD 248 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------------TTEEEEECCTTTCC---C-CCS
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------------CCcEEEeccccCCC---C-Ccc
Confidence 4568999999999999999999999999999999 9999887652 34999999987632 2 399
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCC---CcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMP---NGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p---gGvlvvn~~ 258 (345)
+|++-..-+ ..+. ....++++++++.|+| ||.+++.-.
T Consensus 249 ~v~~~~~lh-~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 249 AVLLKYILH-NWTD-KDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EEEeehhhc-cCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 999742211 1111 1223789999999999 999877643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-08 Score=95.24 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=71.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccc-c-CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSE-D-ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~-~-~~~ 215 (345)
.+.++||+||||+|.++..+++. +..+|++||+++.|++.+.+. ++++.... .|++..-. . ...
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~------------~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ------------DDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT------------CTTEEEECSCCGGGCCGGGCTTC
T ss_pred ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh------------CcccceecccCceecchhhCCCC
Confidence 34678999999999999988875 557999999999999986542 34554443 24443211 1 223
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.||+|++|..-. .+ ..++..+++.|+|||.+++-
T Consensus 151 ~fD~v~~d~sf~-----sl--~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 151 LPSFASIDVSFI-----SL--NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCSEEEECCSSS-----CG--GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEEEeeHh-----hH--HHHHHHHHHHcCcCCEEEEE
Confidence 599999986332 11 56899999999999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=96.16 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+++.+|+.+++++|+ |.+++.|++ .++++++.+|..+-+ ++. |
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~---p~~-D 261 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------------FPGVTHVGGDMFKEV---PSG-D 261 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------------CTTEEEEECCTTTCC---CCC-S
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------------cCCeEEEeCCcCCCC---CCC-C
Confidence 3568999999999999999999999999999999 999887653 257999999998732 223 9
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++-..-+. .+. -....+++++++.|+|||.+++.-.
T Consensus 262 ~v~~~~vlh~-~~d-~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 262 TILMKWILHD-WSD-QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEEESCGGG-SCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEEehHHhcc-CCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9987432211 111 1234789999999999999887543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=91.08 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=69.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCC-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASG- 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~- 215 (345)
.+.++||+||||+|.++..+++. +..+|++||+++.+++.|++.. +++......-..++. ....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 102 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD------------ERVVVMEQFNFRNAVLADFEQG 102 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC------------TTEEEECSCCGGGCCGGGCCSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC------------ccccccccceEEEeCHhHcCcC
Confidence 34578999999999999999876 4469999999999999988743 233333222222222 1122
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.||.+.+|+.-. .+ ..++.++++.|+|||.+++-+
T Consensus 103 ~~d~~~~D~v~~-----~l--~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 103 RPSFTSIDVSFI-----SL--DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCSEEEECCSSS-----CG--GGTHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEEEEEhh-----hH--HHHHHHHHHhccCCCEEEEEE
Confidence 467777775321 11 568999999999999998854
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=99.32 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=78.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||+|.++..+.++. +..++++||+||.+++.| ++++++++|..++. ..++|
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------------~~~~~~~~D~~~~~--~~~~f 99 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------------PWAEGILADFLLWE--PGEAF 99 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------------TTEEEEESCGGGCC--CSSCE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------------CCCcEEeCChhhcC--ccCCC
Confidence 345699999999999999998765 578999999999999776 25899999999874 34789
Q ss_pred cEEEEcCCCCCC-C--------CCCc----------------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGK-V--------LPQL----------------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~-~--------p~~l----------------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|+++.+-... . +... ....|++.+.+.|+|||.+++-+..
T Consensus 100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 999997432211 0 0000 1126899999999999999887764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6e-09 Score=101.97 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++. +.+. ....+..+|+.. +...+++||
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~--------~~~~~~~~~~~~-l~~~~~~fD 173 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRV--------RTDFFEKATADD-VRRTEGPAN 173 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCE--------ECSCCSHHHHHH-HHHHHCCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCc--------ceeeechhhHhh-cccCCCCEE
Confidence 45679999999999999999875 56999999999999999987 3221 011111223222 222468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. +++ .-.++++++++.|+|||++++....
T Consensus 174 ~I~~~~vl~-h~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 174 VIYAANTLC-HIP---YVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp EEEEESCGG-GCT---THHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECChHH-hcC---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999842211 122 3468999999999999999987654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=89.36 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=83.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~ 215 (345)
.+..+||++|+|.|..+..+++.. +..+|+++|+++..++.+++++.-.. -.+++++.+|+.++.... ..
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-------~~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-------VSCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEeCChHhcCccccccC
Confidence 356789999999999999988764 56899999999999999998874221 246999999999875321 15
Q ss_pred cccEEEEcCCCCCC-C----CCC----------c-----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGK-V----LPQ----------L-----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~-~----p~~----------l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||.|++|+...+. . |.. + ...++++.+.+.|+ ||.++....+...
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 79999999865321 1 111 0 12356777777776 9998877665543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=89.69 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=80.3
Q ss_pred CCCCCEEEEeecc------cHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE-EEccccccc
Q 038076 139 VPNGPIAIYGLGG------GTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV-HIGDVFSPS 210 (345)
Q Consensus 139 ~~p~~VLiIG~G~------G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v-~~gDa~~~l 210 (345)
.+..+||+||||+ |+ ..+.+..| +.+|++||++|. ++ ++++ +++|+.+..
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------v~----------~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------VS----------DADSTLIGDCATVH 119 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------BC----------SSSEEEESCGGGCC
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------CC----------CCEEEEECccccCC
Confidence 4567999999954 76 44455555 689999999998 11 3667 999998752
Q ss_pred ccCCCcccEEEEcCCCCCC---CCCC----cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 211 EDASGRYAGIVVDLFSEGK---VLPQ----LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~---~p~~----l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
..++||+|++|...... ...+ -.-.++++.+++.|+|||.+++.++.... ..
T Consensus 120 --~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~-------------------~~ 178 (290)
T 2xyq_A 120 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-------------------NA 178 (290)
T ss_dssp --CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-------------------CH
T ss_pred --ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC-------------------HH
Confidence 24689999998643210 0111 12247899999999999999998765443 13
Q ss_pred HHHHHHHHH-CCCCEEE
Q 038076 284 SAIRALSEA-FPGKVSW 299 (345)
Q Consensus 284 ~~~~~l~~~-F~~~v~~ 299 (345)
.+.+.+++. |. .+.+
T Consensus 179 ~l~~~l~~~GF~-~v~~ 194 (290)
T 2xyq_A 179 DLYKLMGHFSWW-TAFV 194 (290)
T ss_dssp HHHHHHTTEEEE-EEEE
T ss_pred HHHHHHHHcCCc-EEEE
Confidence 566667776 76 4543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-08 Score=96.25 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=82.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-----CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-----LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-----~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+||++|||+|.++..+.+..+. .+++++|+||.++++|+....... .+++++.+|+.... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g--------~~~~i~~~D~l~~~--~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--------QKMTLLHQDGLANL--LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--------CCCEEEESCTTSCC--CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC--------CCceEEECCCCCcc--cc
Confidence 4578999999999999988876543 799999999999999998764321 25789999987743 35
Q ss_pred CcccEEEEcCCCCCC------------CCCCc--chHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGK------------VLPQL--EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~------------~p~~l--~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++||+|+.+.+-+.. .+... ....|++.+.+.|+|||.+++-+..
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 789999998642110 00011 2246899999999999998887754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=88.09 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+. +||+||||+|.++..+++. +.+|++||+|+.+++.+++.+. +.+++++++|+.++--.....+|
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~----------~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS----------GLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT----------TSSEEEEESCGGGSCGGGSCTTE
T ss_pred CCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC----------CCCEEEEECChhhCChhhccCcc
Confidence 445 9999999999999999986 3789999999999999999875 24799999999986322223689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.|+.++ |....+.-.++.+....-+.+++++.
T Consensus 113 ~iv~Nl------Py~iss~il~~ll~~~~~~~~~lm~Q 144 (271)
T 3fut_A 113 LLVANL------PYHIATPLVTRLLKTGRFARLVFLVQ 144 (271)
T ss_dssp EEEEEE------CSSCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred EEEecC------cccccHHHHHHHhcCCCCCEEEEEee
Confidence 988754 33444444444443322235566654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-08 Score=92.69 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=81.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+||+||||.|-++..+....|..++.++|||+.+++++++++... +.+.++.+.|...- ..+++||
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~--------g~~~~~~v~D~~~~--~p~~~~D 200 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL--------NVPHRTNVADLLED--RLDEPAD 200 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT--------TCCEEEEECCTTTS--CCCSCCS
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc--------CCCceEEEeeeccc--CCCCCcc
Confidence 5689999999999999999888779999999999999999999998543 34578888887653 3678999
Q ss_pred EEEEcCCCCCCCCCCcchH---HHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEV---ATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~---ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-. ..++|... ..| .+.+.|+|+|+++ |+..
T Consensus 201 vaL~lk-----ti~~Le~q~kg~g~-~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 201 VTLLLK-----TLPCLETQQRGSGW-EVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp EEEETT-----CHHHHHHHSTTHHH-HHHHHSSCSEEEE-EEEC
T ss_pred hHHHHH-----HHHHhhhhhhHHHH-HHHHHhCCCCEEE-eccc
Confidence 998721 11222222 345 7899999999986 5554
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=91.61 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=82.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCC--------------------------------------CEEEEEECCHHHHHH
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPS--------------------------------------LKLEGWEIDEILIDK 179 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~--------------------------------------~~v~~VEidp~vi~~ 179 (345)
..+...+++.+||+|+++.++.....+ .+|+++|+|+.+++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 345678999999999999887754222 569999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC--CcEEEEEe
Q 038076 180 VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP--NGRFMVNC 257 (345)
Q Consensus 180 A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p--gGvlvvn~ 257 (345)
|+++...... ..+++++.+|+.++.. +++||+|++|.+-+..+...-...++|+.+.+.|++ ||.+.+-.
T Consensus 272 Ar~Na~~~gl------~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 272 ARKNAREVGL------EDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHHHHHTTC------TTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHcCC------CCceEEEECChHHCCc--cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 9998753332 3579999999999743 458999999865443322222235677777777766 88776544
Q ss_pred c
Q 038076 258 G 258 (345)
Q Consensus 258 ~ 258 (345)
.
T Consensus 344 ~ 344 (384)
T 3ldg_A 344 N 344 (384)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.1e-08 Score=93.42 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=72.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CC-----
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-AS----- 214 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~----- 214 (345)
+.+||++|||+|+++..+.+. ..+|++||++|.+++.|+++..... -++++++.+|+.+++.. ..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng-------~~~v~~~~~d~~~~~~~~~~~~~~~ 284 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH-------IDNVQIIRMAAEEFTQAMNGVREFN 284 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT-------CCSEEEECCCSHHHHHHHSSCCCCT
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC-------CCceEEEECCHHHHHHHHhhccccc
Confidence 578999999999999988763 4699999999999999999875432 24799999999987643 11
Q ss_pred ---------CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 ---------GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ---------~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.+||+|++|....+ . ...+.+.|+++|.+++...
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~g------~----~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRSG------L----DSETEKMVQAYPRILYISC 327 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTTC------C----CHHHHHHHTTSSEEEEEES
T ss_pred cccccccccCCCCEEEECcCccc------c----HHHHHHHHhCCCEEEEEEC
Confidence 37999999854321 1 2334445567777665443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=93.05 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=78.8
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCC--------------------------------------CEEEEEECCHHHHHH
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPS--------------------------------------LKLEGWEIDEILIDK 179 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~--------------------------------------~~v~~VEidp~vi~~ 179 (345)
..+...+|+.+||+|+++.++.....+ .+|+++|+||.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 345678999999999999887754222 569999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC--CcEEEEEe
Q 038076 180 VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP--NGRFMVNC 257 (345)
Q Consensus 180 A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p--gGvlvvn~ 257 (345)
|+++...... +.+++++.+|+.++.. +++||+|++|.+-+......-.-.++|+.+.+.|++ ||.+.+-+
T Consensus 279 Ar~Na~~~gl------~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 279 AKQNAVEAGL------GDLITFRQLQVADFQT--EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHHTTC------TTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHcCC------CCceEEEECChHhCCC--CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9998753332 3479999999999743 468999999754322111001123567766666655 77776544
Q ss_pred c
Q 038076 258 G 258 (345)
Q Consensus 258 ~ 258 (345)
.
T Consensus 351 ~ 351 (393)
T 3k0b_A 351 S 351 (393)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-07 Score=83.30 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=61.7
Q ss_pred HHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc
Q 038076 129 WDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS 208 (345)
Q Consensus 129 ~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~ 208 (345)
.+.+.......+..+||+||||+|.++..+++.. .+|++||+|+.+++.+++.+.. .++++++++|+.+
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~---------~~~v~~~~~D~~~ 87 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD---------HDNFQVLNKDILQ 87 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT---------CCSEEEECCCGGG
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc---------CCCeEEEEChHHh
Confidence 3444333333456789999999999999999873 7999999999999999998752 3589999999988
Q ss_pred ccccCCCcccEEEEc
Q 038076 209 PSEDASGRYAGIVVD 223 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D 223 (345)
+--.....| .|+.+
T Consensus 88 ~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 88 FKFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCCSSCCC-EEEEE
T ss_pred CCcccCCCe-EEEEe
Confidence 632222445 45554
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-08 Score=93.61 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=81.3
Q ss_pred HhhccccCCCCCEEEEeecccHHHHHHHHhCC--------------------------------------CCEEEEEECC
Q 038076 132 FVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWP--------------------------------------SLKLEGWEID 173 (345)
Q Consensus 132 ~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p--------------------------------------~~~v~~VEid 173 (345)
|..+....+..++|+.|||+|+++.++..... ..+|+++|+|
T Consensus 187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 266 (385)
T 3ldu_A 187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID 266 (385)
T ss_dssp HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 33333334568899999999999988875421 2579999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC--Cc
Q 038076 174 EILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP--NG 251 (345)
Q Consensus 174 p~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p--gG 251 (345)
|.+++.|+++...... +.+++++.+|+.++.. +++||+|++|.+-+......-.-.++|+.+.+.|++ ||
T Consensus 267 ~~ai~~Ar~Na~~~gl------~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 267 EESIDIARENAEIAGV------DEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp HHHHHHHHHHHHHHTC------GGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred HHHHHHHHHHHHHcCC------CCceEEEECChhhcCc--CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999998753321 3479999999999743 468999999754332111011124567777666765 77
Q ss_pred EEEEEec
Q 038076 252 RFMVNCG 258 (345)
Q Consensus 252 vlvvn~~ 258 (345)
.+.+-+.
T Consensus 339 ~~~iit~ 345 (385)
T 3ldu_A 339 SYYLITS 345 (385)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 6654443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=88.75 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=61.8
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+++. ..+|++||+|+.+++.+++.+. . .++++++++|+.++- -....|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~-------~~~v~vi~gD~l~~~-~~~~~f 115 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--L-------YNNIEIIWGDALKVD-LNKLDF 115 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--H-------CSSEEEEESCTTTSC-GGGSCC
T ss_pred CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--c-------CCCeEEEECchhhCC-cccCCc
Confidence 345678999999999999999986 5799999999999999999875 1 357999999998852 233579
Q ss_pred cEEEEc
Q 038076 218 AGIVVD 223 (345)
Q Consensus 218 D~Ii~D 223 (345)
|.|+.+
T Consensus 116 D~Iv~N 121 (295)
T 3gru_A 116 NKVVAN 121 (295)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 999975
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-08 Score=90.58 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+++. +.+|++||+|+.+++.+++.+.... .++++++.+|+.++- ..+||
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~-------~~~v~~~~~D~~~~~---~~~~D 108 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG-------YNNLEVYEGDAIKTV---FPKFD 108 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT-------CCCEEC----CCSSC---CCCCS
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC-------CCceEEEECchhhCC---cccCC
Confidence 45678999999999999998875 5799999999999999998874221 257999999998862 35899
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
+|++|.
T Consensus 109 ~Vv~n~ 114 (299)
T 2h1r_A 109 VCTANI 114 (299)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999975
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=90.01 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc---ccCC-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS---EDAS- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l---~~~~- 214 (345)
.+..+||++|||+|..+..+++..|+.+|++||+||.+++.|++++... +++++++++|+.+.- ...+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~--------g~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF--------SDRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--------CCcEEEEECCHHHHHHHHHhcCC
Confidence 4567999999999999999999888889999999999999999987421 268999999987742 2111
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
.+||.|++|+
T Consensus 97 ~~~D~Vl~D~ 106 (301)
T 1m6y_A 97 EKVDGILMDL 106 (301)
T ss_dssp SCEEEEEEEC
T ss_pred CCCCEEEEcC
Confidence 5899999997
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=83.70 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=67.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+ ..+++++|+++. +++++.+|+.+. ...+++||
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~----------------------~~~~~~~d~~~~-~~~~~~fD 117 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL----------------------DPRVTVCDMAQV-PLEDESVD 117 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS----------------------STTEEESCTTSC-SCCTTCEE
T ss_pred CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC----------------------CceEEEeccccC-CCCCCCEe
Confidence 45689999999999998776 268999999987 134678888773 33467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .-...++++.+++.|+|||.+++....
T Consensus 118 ~v~~~~~l~-----~~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 118 VAVFCLSLM-----GTNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp EEEEESCCC-----SSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred EEEEehhcc-----ccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 999843221 123468999999999999999886543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=91.29 Aligned_cols=98 Identities=13% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|..+..+.+.+|+.+++++|+ |.+++.|++ .++++++.+|..+-+ + .||+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~---~-~~D~ 254 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-------------NENLNFVGGDMFKSI---P-SADA 254 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-------------CSSEEEEECCTTTCC---C-CCSE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-------------CCCcEEEeCccCCCC---C-CceE
Confidence 568999999999999999999999999999999 888876654 135999999987722 2 4999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCC---CcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMP---NGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p---gGvlvvn~ 257 (345)
|++-..-+ ..+. ....++++++++.|+| ||.+++.-
T Consensus 255 v~~~~vlh-~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 255 VLLKWVLH-DWND-EQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp EEEESCGG-GSCH-HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred EEEccccc-CCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 99742211 1111 1234889999999999 99887753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=9.4e-08 Score=97.78 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=74.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
..|.+||+||||+|.++..+.+. +.+|++||+++.++++|+.+....+ .-+++++++|+.+.... .+++|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~f 135 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENP-------DFAAEFRVGRIEEVIAALEEGEF 135 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTST-------TSEEEEEECCHHHHHHHCCTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcC-------CCceEEEECCHHHHhhhccCCCc
Confidence 46789999999999999999975 6899999999999999999885332 24699999999987543 46789
Q ss_pred cEEEEcCCCCCCCCCCcchHH---HHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVA---TWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~e---f~~~~~~~L~pgGvlv 254 (345)
|+|++- .+..|+...+ ....+.+.|+++|...
T Consensus 136 D~v~~~-----e~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 136 DLAIGL-----SVFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp SEEEEE-----SCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred cEEEEC-----cchhcCCCHHHHHHHHHHHHHhcccccee
Confidence 999972 2222222222 2234555677777533
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=93.49 Aligned_cols=112 Identities=12% Similarity=0.013 Sum_probs=81.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-------------PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-------------p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
+..+|++.|||+|.+...+.++. +..+++++|+||.++++|+..+.+... ...+.+++++|+
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~-----~~~~~~i~~gD~ 245 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-----GTDRSPIVCEDS 245 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-----CSSCCSEEECCT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC-----CcCCCCEeeCCC
Confidence 35689999999999998887652 347899999999999999987644331 112577999998
Q ss_pred ccccccCCCcccEEEEcCCCCCC-CC------------CCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGK-VL------------PQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~-~p------------~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.... ..++||+|+.+.+-... .. ..-....|++.+.+.|+|||.+++-+.
T Consensus 246 l~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 246 LEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp TTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 7753 23589999997533211 00 011125799999999999999887664
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=85.33 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-cccC--CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SEDA--SG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~~~--~~ 215 (345)
.+..+||+||||+|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++++|+.++ +... ++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~---------~~~v~~i~~D~~~~~~~~~~~~~ 96 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ---------QKNITIYQNDALQFDFSSVKTDK 96 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---------CTTEEEEESCTTTCCGGGSCCSS
T ss_pred CCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---------CCCcEEEEcchHhCCHHHhccCC
Confidence 45678999999999999999875 47999999999999999998852 35899999999986 2221 35
Q ss_pred cccEEEEc
Q 038076 216 RYAGIVVD 223 (345)
Q Consensus 216 ~yD~Ii~D 223 (345)
+|| |+.+
T Consensus 97 ~~~-vv~N 103 (255)
T 3tqs_A 97 PLR-VVGN 103 (255)
T ss_dssp CEE-EEEE
T ss_pred CeE-EEec
Confidence 788 5543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=87.09 Aligned_cols=103 Identities=11% Similarity=-0.020 Sum_probs=76.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+||+||||.|.++..+. +..+++++|||+.+++.+++++... +++.++.++|...-. .+++||
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~--------g~~~~~~v~D~~~~~--~~~~~D 170 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK--------DWDFTFALQDVLCAP--PAEAGD 170 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT--------TCEEEEEECCTTTSC--CCCBCS
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc--------CCCceEEEeecccCC--CCCCcc
Confidence 568999999999999988766 7899999999999999999997532 467899999987643 567999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++-.-- ...++......+ .+.++|+++|+++ |+.
T Consensus 171 vvLllk~l--h~LE~q~~~~~~-~ll~aL~~~~vvV-sfP 206 (253)
T 3frh_A 171 LALIFKLL--PLLEREQAGSAM-ALLQSLNTPRMAV-SFP 206 (253)
T ss_dssp EEEEESCH--HHHHHHSTTHHH-HHHHHCBCSEEEE-EEE
T ss_pred hHHHHHHH--HHhhhhchhhHH-HHHHHhcCCCEEE-EcC
Confidence 99762100 001111222344 6777999998875 665
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=80.43 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~y 217 (345)
.+..+||+||||+|.++..+++. +..+|++||+|+.+++.+++. . .++++++++|+.++- ....+.|
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~----------~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G----------DERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C----------CTTEEEECSCTTTCCGGGSCSSE
T ss_pred CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c----------CCCeEEEEcchhhCChhHccCCc
Confidence 45678999999999999999875 458999999999999999887 2 357999999998862 2212233
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhc-cCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDR-LMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~-L~pgGvlvvn 256 (345)
.|+.++ |....+.-+++.+... .-+.+++++.
T Consensus 98 -~vv~Nl------Py~i~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 98 -KVVGNL------PYNVASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp -EEEEEC------CTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred -EEEEEC------chhccHHHHHHHHhcCCCCceEEEEEe
Confidence 555543 3333444344444332 2445566654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-07 Score=93.06 Aligned_cols=79 Identities=14% Similarity=-0.074 Sum_probs=63.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
+..+||++|||+|..+..+.+. +.+|++||+||.+++.|++++..... .-.+++++++|+.+++.. ..++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~-----gl~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLN-----EGKDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSC-----TTCEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhcc-----CCCcEEEEECcHHHhhhhccCCCce
Confidence 3689999999999999888764 57999999999999999998742100 014799999999998754 246899
Q ss_pred EEEEcCC
Q 038076 219 GIVVDLF 225 (345)
Q Consensus 219 ~Ii~D~f 225 (345)
+|++|..
T Consensus 166 vV~lDPP 172 (410)
T 3ll7_A 166 YIYVDPA 172 (410)
T ss_dssp EEEECCE
T ss_pred EEEECCC
Confidence 9999963
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=85.15 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=73.9
Q ss_pred CCCEEEEeecccHHHHH----HHHhCCCCEEEE--EECCHH---------HHHHHHHhcC-CCCCCCCCCCCC--cEEEE
Q 038076 141 NGPIAIYGLGGGTAAHL----MLDLWPSLKLEG--WEIDEI---------LIDKVRDYFG-LSDLEKPTATGG--VLQVH 202 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~----l~~~~p~~~v~~--VEidp~---------vi~~A~~~f~-~~~~~~~~~~~~--rv~v~ 202 (345)
.-+||++|.|+|..... +.+..|..+++. +|-+|. .-++.+.... .+. ..++ .++++
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~-----~~~~~v~L~l~ 171 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE-----YEGERLSLKVL 171 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE-----EECSSEEEEEE
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc-----ccCCcEEEEEE
Confidence 45799999999975432 334467665554 454321 1122221111 111 1233 46788
Q ss_pred EcccccccccCC-CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 203 IGDVFSPSEDAS-GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 203 ~gDa~~~l~~~~-~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.||+++.+.... .++|+|++|+|++.. .+++++.++|+.++++++|||+++.
T Consensus 172 ~GDa~~~l~~l~~~~~Da~flDgFsP~k-NPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 172 LGDARKRIKEVENFKADAVFHDAFSPYK-NPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp ESCHHHHGGGCCSCCEEEEEECCSCTTT-SGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred echHHHHHhhhcccceeEEEeCCCCccc-CcccCCHHHHHHHHHHhCCCcEEEE
Confidence 999999988744 589999999999743 5679999999999999999999974
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-08 Score=89.33 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCH-------HHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDE-------ILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp-------~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~ 212 (345)
+..+||++|||+|..+..+.+. +.+|+++|++| .+++.|+++..... ...+++++.+|+.+++..
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~------~~~ri~~~~~d~~~~l~~ 154 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQD------TAARINLHFGNAAEQMPA 154 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH------HHTTEEEEESCHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhC------CccCeEEEECCHHHHHHh
Confidence 4579999999999999998874 57999999999 99999987653221 124699999999998753
Q ss_pred CC---CcccEEEEcCC
Q 038076 213 AS---GRYAGIVVDLF 225 (345)
Q Consensus 213 ~~---~~yD~Ii~D~f 225 (345)
.+ ++||+|++|..
T Consensus 155 ~~~~~~~fD~V~~dP~ 170 (258)
T 2r6z_A 155 LVKTQGKPDIVYLDPM 170 (258)
T ss_dssp HHHHHCCCSEEEECCC
T ss_pred hhccCCCccEEEECCC
Confidence 22 68999999853
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-08 Score=92.27 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=73.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+.. .+|++||+|+.+++.|++.+.. .++++++.+|+.++--..+++|
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~---------~~~v~~~~~D~~~~~~~~~~~f- 95 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL---------NTRVTLIHQDILQFQFPNKQRY- 95 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT---------CSEEEECCSCCTTTTCCCSSEE-
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc---------CCceEEEECChhhcCcccCCCc-
Confidence 456789999999999999999873 8999999999999999887641 3689999999988632223578
Q ss_pred EEEEcCCCCCCCC--C-----CcchHHHH----HHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVL--P-----QLEEVATW----LKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p--~-----~l~t~ef~----~~~~~~L~pgGvlvvn~ 257 (345)
.|+++..-....+ . ......++ +.+.+.|+|||.+++.+
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 6666542211100 0 00111123 55778888888776543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-07 Score=85.46 Aligned_cols=106 Identities=18% Similarity=0.030 Sum_probs=81.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-----CCCEEEEEECCHH--------------------------HHHHHHHhcCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-----PSLKLEGWEIDEI--------------------------LIDKVRDYFGLS 187 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-----p~~~v~~VEidp~--------------------------vi~~A~~~f~~~ 187 (345)
..|++||++|...|..+..+.+.. ++.+|+++|..+. .++.++++|.-.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 458899999999998887776543 4789999996421 356678877432
Q ss_pred CCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 188 DLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 188 ~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+. ..++++++.||+.+.|... .++||+|++|+.. + -.+.++|+.+..+|+|||++++
T Consensus 185 gl-----~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y----~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 185 DL-----LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y----ESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp TC-----CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H----HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC-----CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c----ccHHHHHHHHHhhcCCCEEEEE
Confidence 21 1378999999999988764 4789999999732 1 1357899999999999999987
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.4e-07 Score=77.11 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+..+||+||+|. + .+|+++.|++.|++.+. .+++++.+|+.+.... .+++
T Consensus 11 ~~g~~vL~~~~g~---------------v-~vD~s~~ml~~a~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------S-PVEALKGLVDKLQALTG-----------NEGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp CTTSEEEEEECTT---------------S-CHHHHHHHHHHHHHHTT-----------TTSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCEEEEecCCc---------------e-eeeCCHHHHHHHHHhcc-----------cCcEEEEechhcCccccCCCCC
Confidence 4678999999985 2 39999999999999863 2388999999875321 5678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|++-..-. +.+.. ..++++++++.|+|||.+++..
T Consensus 64 fD~V~~~~~l~-~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 64 FDIILSGLVPG-STTLH--SAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp EEEEEECCSTT-CCCCC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeEEEECChhh-hcccC--HHHHHHHHHHHCCCCEEEEEEc
Confidence 99999832211 22122 2789999999999999999853
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=9.9e-07 Score=89.76 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=82.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC------------------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP------------------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV 201 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p------------------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v 201 (345)
+..+|++.+||+|.+...+.++.. ..+++++|+||.++++|+..+.+..... ..+.+.++
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~--~~~~~~~I 246 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG--NLDHGGAI 246 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC--BGGGTBSE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc--cccccCCe
Confidence 456899999999998887765421 2479999999999999998775443210 00123789
Q ss_pred EEcccccccccCCCcccEEEEcCCCCCCC----------CCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 202 HIGDVFSPSEDASGRYAGIVVDLFSEGKV----------LPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 202 ~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~----------p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+++|+.........+||+|+.+.+-.... +..-....|++.+.+.|+|||.+++-+..
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 99998764323457899999976432211 11112347999999999999998876653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-07 Score=84.15 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCC---CCcEEEEEcccccccccCCCccc
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTAT---GGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~---~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+||++|||.|..+..+.+. +.+|++||++|.+.+++++.+..... +.... ..|++++.+|+.++++...++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~-~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYA-DAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHH-CTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHh-hHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 79999999999999999986 46899999999987777765421000 00001 15799999999999876556899
Q ss_pred EEEEcCC
Q 038076 219 GIVVDLF 225 (345)
Q Consensus 219 ~Ii~D~f 225 (345)
+|++|..
T Consensus 167 vV~lDP~ 173 (258)
T 2oyr_A 167 VVYLDPM 173 (258)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999963
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=89.71 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=77.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC------------------------------------------CCCEEEEEECCHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW------------------------------------------PSLKLEGWEIDEIL 176 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~------------------------------------------p~~~v~~VEidp~v 176 (345)
.+...+++.+||+|+++.++.... +..+|.++|+||.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 456789999999999998776531 23589999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhc---cCCCcE
Q 038076 177 IDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDR---LMPNGR 252 (345)
Q Consensus 177 i~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~---L~pgGv 252 (345)
++.|+++...... +.++++..+|+.++.... .++||+|+++.+-+..+...-.-.++|+.+.+. +.|||.
T Consensus 269 v~~A~~N~~~agv------~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 269 IQRARTNARLAGI------GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHTTC------GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHcCC------CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 9999998754432 346999999999864322 238999999865432221111224555555444 457998
Q ss_pred EEEEe
Q 038076 253 FMVNC 257 (345)
Q Consensus 253 lvvn~ 257 (345)
+.+-+
T Consensus 343 ~~ilt 347 (703)
T 3v97_A 343 LSLFS 347 (703)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.3e-07 Score=90.81 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=80.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCC---------------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP---------------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD 205 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p---------------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD 205 (345)
+.+|++.+||+|++...+.++.. ..++.++|+||.++++|+..+.+... +.++.++.+|
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi------~~~i~i~~gD 318 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI------DFNFGKKNAD 318 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC------CCBCCSSSCC
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC------Ccccceeccc
Confidence 45899999999998877654321 46899999999999999987754432 2345557888
Q ss_pred cccccccCCCcccEEEEcCCCCCC------------------------CCC-CcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 206 VFSPSEDASGRYAGIVVDLFSEGK------------------------VLP-QLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 206 a~~~l~~~~~~yD~Ii~D~f~~~~------------------------~p~-~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
....-.....+||+|+.+.+-... .|+ .-....|++.+.+.|+|||.+++-+..
T Consensus 319 tL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 319 SFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred hhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 765433345789999997643321 111 112236999999999999998877654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-06 Score=79.59 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=96.3
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||.|..+..+....+...+.++++.-++ . ..+... ...+.++..+.+|+ +...-.+++|
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl-~-------~~pi~~-~~~g~~ii~~~~~~-dv~~l~~~~~ 141 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG-H-------EKPMNV-QSLGWNIITFKDKT-DIHRLEPVKC 141 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-C-------CCCCCC-CBTTGGGEEEECSC-CTTTSCCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC-c-------cccccc-CcCCCCeEEEeccc-eehhcCCCCc
Confidence 345678999999999999988876566678888886332 0 001000 00122444455543 2122246789
Q ss_pred cEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCC-cEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 218 AGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPN-GRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 218 D~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pg-Gvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
|+|++|..-..+.. ++..+.+.++.+.+.|+|| |.+++-+..+.. .....+++.|++.|.
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg-----------------~~~~~l~~~lk~~F~ 204 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYM-----------------PDVLEKLELLQRRFG 204 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTS-----------------HHHHHHHHHHHHHHC
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCC-----------------ccHHHHHHHHHHhcC
Confidence 99999974332111 2223334577889999999 999999987533 246789999999999
Q ss_pred CCEEEEEecCCC--CceEEEEeCCCCCch
Q 038076 295 GKVSWKRMPERN--GENFLALTGLLPDLS 321 (345)
Q Consensus 295 ~~v~~~~~~~~~--~~n~v~~a~~~p~~~ 321 (345)
.|.+.+ |... ..-.++++....+..
T Consensus 205 -~V~~~K-PaSR~~S~E~Y~V~~~r~n~~ 231 (277)
T 3evf_A 205 -GTVIRN-PLSRNSTHEMYYVSGARSNVT 231 (277)
T ss_dssp -CEEECC-TTSCTTCCCEEEESSCCCCHH
T ss_pred -CEEEEe-CCCCCCCCceEEEEecCCCcc
Confidence 666433 3322 223556666665543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-07 Score=91.50 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=72.8
Q ss_pred CCEEEEeecccHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGGGTAAHLMLDL---W-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~---~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..|+++|+|.|-+....++. . -..+|.+||-+|. ...|++.....+ -+.+++++++|.+++ ..+++.
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~------~~dkVtVI~gd~eev--~LPEKV 429 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE------WGSQVTVVSSDMREW--VAPEKA 429 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT------TGGGEEEEESCTTTC--CCSSCE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc------CCCeEEEEeCcceec--cCCccc
Confidence 45999999999985554432 1 1248999999985 555665443222 257899999999997 467999
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+||....... ...+. -.|.+....+.|+|||+++
T Consensus 430 DIIVSEwMG~f-Ll~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 430 DIIVSELLGSF-ADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEECCCCBTT-BGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred CEEEEEcCccc-ccccC-CHHHHHHHHHhcCCCcEEc
Confidence 99998765432 22333 2477877888899999975
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-06 Score=78.25 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=49.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+..+||+||||+|.++. +.+ .+..+|++||+|+.+++.+++.+.. .++++++++|+.++
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~---------~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL---------GPKLTIYQQDAMTF 79 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT---------GGGEEEECSCGGGC
T ss_pred CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc---------CCceEEEECchhhC
Confidence 456789999999999999 654 3333499999999999999997741 25899999999885
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-06 Score=83.25 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=84.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~ 214 (345)
+..+|++.+||+|++...+.++. +..++.++|+||...++|+..+.+... ..++.+++.+|.... -....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----~~~~~~I~~gDtL~~d~p~~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFLHNADTLDEDWPTQEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC-----CGGGEEEEESCTTTSCSCCSSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC-----CcCccceEecceeccccccccc
Confidence 45689999999999988887764 357999999999999999987644331 124689999998764 22346
Q ss_pred CcccEEEEcCCCCCC------------------CC-CCcchHHHHHHHHhccC-CCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGK------------------VL-PQLEEVATWLKLKDRLM-PNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~------------------~p-~~l~t~ef~~~~~~~L~-pgGvlvvn~~~ 259 (345)
.+||+|+.+.+-... .| ..-....|++.+.+.|+ |||.+++-+..
T Consensus 296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 789999987543211 00 01112458999999999 99998876654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-06 Score=87.57 Aligned_cols=105 Identities=15% Similarity=-0.015 Sum_probs=72.9
Q ss_pred CCCEEEEeecccHHHHHHHHh----C---------CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL----W---------PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~----~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+.||++|||+|.+.....+. . ...+|.+||.+|..+...++... .. .+.+++++.+|.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng------~~d~VtVI~gd~e 482 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT------WKRRVTIIESDMR 482 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT------TTTCSEEEESCGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC------CCCeEEEEeCchh
Confidence 346999999999996543221 1 23599999999976655444331 12 1468999999999
Q ss_pred cccc----cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 208 SPSE----DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 208 ~~l~----~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
++-- ...++.|+||...-. +....-...|.+..+.+.|+|||+++
T Consensus 483 ev~lp~~~~~~ekVDIIVSElmG--sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 483 SLPGIAKDRGFEQPDIIVSELLG--SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp GHHHHHHHTTCCCCSEEEECCCB--TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred hcccccccCCCCcccEEEEeccc--cccchhccHHHHHHHHHhCCCCcEEE
Confidence 9732 126899999986643 22111235688998899999999876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=79.06 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=51.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+..+||+||||+|.++..+++..+. .+|++||+|+.+++.+++.+ . ++++++++|+.++
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~---------~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G---------ELLELHAGDALTF 102 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G---------GGEEEEESCGGGC
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C---------CCcEEEECChhcC
Confidence 45678999999999999999986432 45999999999999999884 1 4799999999886
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-06 Score=79.86 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=96.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||.|....++.+..+...+.++|+...+...+ .+- ...+.++..+..+. +...-.++++
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p-----i~~----~~~g~~ii~~~~~~-dv~~l~~~~~ 157 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP-----IMR----TTLGWNLIRFKDKT-DVFNMEVIPG 157 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC-----CCC----CBTTGGGEEEECSC-CGGGSCCCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc-----ccc----ccCCCceEEeeCCc-chhhcCCCCc
Confidence 3456789999999999999888766667899999865421111 000 00122333333221 1122256899
Q ss_pred cEEEEcCCCCCCC--CCCcchHHHHHHHHhccCCC--cEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 218 AGIVVDLFSEGKV--LPQLEEVATWLKLKDRLMPN--GRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 218 D~Ii~D~f~~~~~--p~~l~t~ef~~~~~~~L~pg--Gvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
|+|++|.--.... .++..+.+.++.+.+.|+|| |.+++-+..+.. .....+++.|++.|
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg-----------------~~~~~l~~~lk~~F 220 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYT-----------------PLIMEELSRLQLKH 220 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCS-----------------HHHHHHHHHHHHHH
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCC-----------------ccHHHHHHHHHHhc
Confidence 9999997443222 12333445577788999999 999999997533 24678899999999
Q ss_pred CCCEEEEEecCCC--CceEEEEeCCCCCc
Q 038076 294 PGKVSWKRMPERN--GENFLALTGLLPDL 320 (345)
Q Consensus 294 ~~~v~~~~~~~~~--~~n~v~~a~~~p~~ 320 (345)
. .|.+.+ |... ..-.++++....+.
T Consensus 221 ~-~V~~~K-PaSR~~S~E~Y~V~~~r~n~ 247 (282)
T 3gcz_A 221 G-GGLVRV-PLSRNSTHEMYWVSGTRTDV 247 (282)
T ss_dssp C-CEEECC-TTSCTTCCCEEEETTCCCCS
T ss_pred C-CEEEEc-CCCcccCcceeEEEecCCCc
Confidence 9 666443 3322 22345666655444
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=72.37 Aligned_cols=135 Identities=15% Similarity=0.043 Sum_probs=99.5
Q ss_pred hHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 127 SYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 127 ~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.|.+.+..+ ++..+|++=.|+|.++.++++ ++.+++.||++|..++.-++++.. +++++++.+|+
T Consensus 82 ~yf~~l~~~----n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~---------~~~~~V~~~D~ 146 (283)
T 2oo3_A 82 EYISVIKQI----NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF---------NKKVYVNHTDG 146 (283)
T ss_dssp HHHHHHHHH----SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT---------TSCEEEECSCH
T ss_pred HHHHHHHHh----cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc---------CCcEEEEeCcH
Confidence 565544442 467899999999999999987 468999999999999999998852 46899999999
Q ss_pred cccccc---CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecCCCCCCccccCCCCCCCccchHH
Q 038076 207 FSPSED---ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWM 281 (345)
Q Consensus 207 ~~~l~~---~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~ 281 (345)
...+.. ..++||+|++|.+-.. .. .-.+.++.+.+ .+.|+|+++++....+. ..
T Consensus 147 ~~~L~~l~~~~~~fdLVfiDPPYe~---k~-~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~-----------------~~ 205 (283)
T 2oo3_A 147 VSKLNALLPPPEKRGLIFIDPSYER---KE-EYKEIPYAIKNAYSKFSTGLYCVWYPVVNK-----------------AW 205 (283)
T ss_dssp HHHHHHHCSCTTSCEEEEECCCCCS---TT-HHHHHHHHHHHHHHHCTTSEEEEEEEESSH-----------------HH
T ss_pred HHHHHHhcCCCCCccEEEECCCCCC---Cc-HHHHHHHHHHHhCccCCCeEEEEEEeccch-----------------HH
Confidence 998863 4468999999963221 11 11234444443 57899999999887664 45
Q ss_pred HHHHHHHHHHHCCCCEE
Q 038076 282 HNSAIRALSEAFPGKVS 298 (345)
Q Consensus 282 ~~~~~~~l~~~F~~~v~ 298 (345)
.+.+.+.|++.-. .+.
T Consensus 206 ~~~~~~~l~~~~~-~~l 221 (283)
T 2oo3_A 206 TEQFLRKMREISS-KSV 221 (283)
T ss_dssp HHHHHHHHHHHCS-SEE
T ss_pred HHHHHHHHHhcCC-CeE
Confidence 6788888876644 444
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=77.12 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=89.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc---CCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF---GLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f---~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+..+||++.+|.|.=+.+++...+...|+++|+++.-++..++.. +.... ....++++...|++.+-....+
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~----~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEI----RDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTT----TTSSSEEEECCCGGGHHHHSTT
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhh----ccCCceEEEeCchhhcchhccc
Confidence 3567999999999988888887766678999999999888777654 22210 1235799999999998655678
Q ss_pred cccEEEEcCCCCCC-------CCCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGK-------VLPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~-------~p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||.|++|++..+. -|... ...+.+..+.+.|+|||+++...-+...
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 99999999987541 11111 2356778888999999999987666655
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=84.50 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=79.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC---CCEEEEEECCHHHHHHH--HHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP---SLKLEGWEIDEILIDKV--RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p---~~~v~~VEidp~vi~~A--~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+|++.|||+|++...+.+..+ ..+++++||||..+++| +......... .......+..+|....-....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll---hGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV---SSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC---BTTBCCEEECCCGGGCCGGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh---cCCCcceEEecchhccccccc
Confidence 467899999999999999887765 36899999999999999 5544321110 011224566666665322245
Q ss_pred CcccEEEEcCCCCCCCC--------------------CC-----cchHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGKVL--------------------PQ-----LEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p--------------------~~-----l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.+||+|+.+.+-..... .. -....|++.+.+.|+|||.+++-+..
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 78999999764321100 00 01345888999999999999877664
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-06 Score=76.76 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=95.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+|||+.|..+..+.+..+...|+++|+..... . .+.. ....+.++.... +..+...-.++++
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~------~-~P~~--~~~~~~~iv~~~-~~~di~~l~~~~~ 148 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH------E-KPIH--MQTLGWNIVKFK-DKSNVFTMPTEPS 148 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS------C-CCCC--CCBTTGGGEEEE-CSCCTTTSCCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc------c-cccc--ccccCCceEEee-cCceeeecCCCCc
Confidence 3567899999999999999999765667899999864321 0 0100 000112222222 2222222246899
Q ss_pred cEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCC-cEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 218 AGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPN-GRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 218 D~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pg-Gvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
|+|++|..-..+.+ ++..+.+.++.+.+.|+|| |.|++-++.+.. .....++..|++.|.
T Consensus 149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG-----------------~~~~~ll~~lk~~F~ 211 (300)
T 3eld_A 149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYH-----------------PDVIEKLERLQLRFG 211 (300)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTS-----------------HHHHHHHHHHHHHHC
T ss_pred CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccC-----------------ccHHHHHHHHHHhCC
Confidence 99999974432221 2233445577888999999 999999987443 346789999999999
Q ss_pred CCEEEEEecCC--CCceEEEEeCCCCCc
Q 038076 295 GKVSWKRMPER--NGENFLALTGLLPDL 320 (345)
Q Consensus 295 ~~v~~~~~~~~--~~~n~v~~a~~~p~~ 320 (345)
.|.+.+ |.. ...-.+++++...+.
T Consensus 212 -~V~~~K-PaSR~~S~E~Y~V~~~r~n~ 237 (300)
T 3eld_A 212 -GGIVRV-PFSRNSTHEMYYISGARNNI 237 (300)
T ss_dssp -CEEECC-TTSCTTCCCEEEESSCCCCH
T ss_pred -cEEEEe-CCCCCCChHHeeeccCCCCc
Confidence 666432 322 222345566666544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=72.89 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---cccC-C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SEDA-S 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~~-~ 214 (345)
.+...+++.+||+|..+..+++. +.+|+++|.||.+++.|++ +. ++|++++++|..++ ++.. .
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~----------~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH----------LPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC----------CTTEEEEESCGGGHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc----------cCCEEEEECCcchHHHHHHHcCC
Confidence 45678999999999999999986 6799999999999999999 63 25899999999986 4332 2
Q ss_pred CcccEEEEcCC
Q 038076 215 GRYAGIVVDLF 225 (345)
Q Consensus 215 ~~yD~Ii~D~f 225 (345)
+++|.|+.|+.
T Consensus 88 ~~vDgIL~DLG 98 (285)
T 1wg8_A 88 ERVDGILADLG 98 (285)
T ss_dssp SCEEEEEEECS
T ss_pred CCcCEEEeCCc
Confidence 57999999874
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.1e-06 Score=85.06 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=79.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-------CC-----CEEEEEECCH---HHHHHHHHhcC------------CCCCC--
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-------PS-----LKLEGWEIDE---ILIDKVRDYFG------------LSDLE-- 190 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-------p~-----~~v~~VEidp---~vi~~A~~~f~------------~~~~~-- 190 (345)
++-+|+++|.|+|.....+.+.+ |. .+++.+|..| +.++.|-..+. .+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34589999999998766655432 22 6899999944 44443322211 11100
Q ss_pred --CCCCCC--CcEEEEEcccccccccC----CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 191 --KPTATG--GVLQVHIGDVFSPSEDA----SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 191 --~~~~~~--~rv~v~~gDa~~~l~~~----~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+....+ -+++++.||+++.+... ..++|+|++|.|++.. .+++++.++|..+.+.++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 000112 37889999999998764 4789999999999754 3568999999999999999999874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=83.25 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCEEEEeecccHHHHHHHHhC-------CC-----CEEEEEEC---CHHHHHHHHHhcC------------CCCCCC---
Q 038076 142 GPIAIYGLGGGTAAHLMLDLW-------PS-----LKLEGWEI---DEILIDKVRDYFG------------LSDLEK--- 191 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~-------p~-----~~v~~VEi---dp~vi~~A~~~f~------------~~~~~~--- 191 (345)
-+|+++|.|+|.......+.+ |. .+++++|. +++.++.+-.++. .+....
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 589999999998766555432 21 57899999 8888875544321 111000
Q ss_pred -CCCC--CCcEEEEEcccccccccC----CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 192 -PTAT--GGVLQVHIGDVFSPSEDA----SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 192 -~~~~--~~rv~v~~gDa~~~l~~~----~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.... .-+++++.||+++.+.+. ..++|+|++|.|++.. .+++++.++|+.+.+.++|||.++..
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0011 356889999999998764 4789999999999743 46799999999999999999998754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=4.2e-05 Score=70.18 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=92.8
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcE---EEEEc-cccccccc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVL---QVHIG-DVFSPSED 212 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv---~v~~g-Da~~~l~~ 212 (345)
.+.+..+|++|||+.|+...++.+..+-..|.+..|-.+. . -..... ..+.+ ++..+ |.++.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~------~~~Gv~~i~~~~G~Df~~~--- 135 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLM------QSYGWNIVTMKSGVDVFYK--- 135 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCC------CSTTGGGEEEECSCCGGGS---
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcc------cCCCceEEEeeccCCccCC---
Confidence 4456789999999999999988875222244454443321 0 001111 01344 44446 88772
Q ss_pred CCCcccEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCCc-EEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHH
Q 038076 213 ASGRYAGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPNG-RFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRAL 289 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pgG-vlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l 289 (345)
.+.++|+|++|.-.....+ ++.-+.+.++.+.+.|+||| .+++=+..... ..+.+.++.|
T Consensus 136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~-----------------~~~~~~l~~l 198 (269)
T 2px2_A 136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYM-----------------PKVIEKLESL 198 (269)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTS-----------------HHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCc-----------------hHHHHHHHHH
Confidence 3578999999974432211 22333346777889999999 99999887433 3467788899
Q ss_pred HHHCCCCEEEEEecCC--CCceEEEEeCCCCC
Q 038076 290 SEAFPGKVSWKRMPER--NGENFLALTGLLPD 319 (345)
Q Consensus 290 ~~~F~~~v~~~~~~~~--~~~n~v~~a~~~p~ 319 (345)
++.|. .|.+ +-|.. ...-+.+++....+
T Consensus 199 k~~F~-~vkv-k~paSR~~S~E~YlVa~~~~n 228 (269)
T 2px2_A 199 QRRFG-GGLV-RVPLSRNSNHEMYWVSGASGN 228 (269)
T ss_dssp HHHHC-CEEE-CCTTSCTTCCCEEEETTCCSC
T ss_pred HHHcC-CEEE-ECCCCCCCCccEEEEecccCc
Confidence 99999 5664 44432 23445666665544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00093 Score=60.63 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=99.8
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~~~~ 215 (345)
.+.+..+|++|||+.|....++.......+|.++|+-+.=-+ .|.. ..++.-+.++++.+ |... + .+.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-------~P~~-~~s~gwn~v~fk~gvDv~~-~--~~~ 143 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-------EPVP-MSTYGWNIVKLMSGKDVFY-L--PPE 143 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-------CCCC-CCCTTTTSEEEECSCCGGG-C--CCC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-------Ccch-hhhcCcCceEEEeccceee-c--CCc
Confidence 345667999999999999998887766678999998543211 0100 01233456899988 8643 2 347
Q ss_pred cccEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 216 RYAGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
++|.|+||.-.....| ++--|...++.+.+.|++ |-+++-+..+.. ....+.++.|+..|
T Consensus 144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~-----------------p~v~e~l~~lq~~f 205 (267)
T 3p8z_A 144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM-----------------PTVIEHLERLQRKH 205 (267)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS-----------------HHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC-----------------hhHHHHHHHHHHHh
Confidence 8999999985532211 122345578888899998 889888887664 33558888999999
Q ss_pred CCCEEEEEecCCCCc--eEEEEeCCCCC
Q 038076 294 PGKVSWKRMPERNGE--NFLALTGLLPD 319 (345)
Q Consensus 294 ~~~v~~~~~~~~~~~--n~v~~a~~~p~ 319 (345)
.+ +.+ +.|...+. -+.++.+...+
T Consensus 206 gg-~lV-R~P~SRnsThEMY~Vsg~~~n 231 (267)
T 3p8z_A 206 GG-MLV-RNPLSRNSTHEMYWISNGTGN 231 (267)
T ss_dssp CC-EEE-CCTTSCTTCCCEEEESSCCCC
T ss_pred CC-EeE-eCCCCCCCcceEEEEecCCCc
Confidence 94 443 45643222 24555554444
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00075 Score=63.09 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=85.2
Q ss_pred hHHHHHhhcc----ccCCCCCEEEEee------cccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCC
Q 038076 127 SYWDEFVSLP----AIVPNGPIAIYGL------GGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTAT 195 (345)
Q Consensus 127 ~Y~~~~~~l~----~~~~p~~VLiIG~------G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~ 195 (345)
-|+|...-+- ..+...+||++|+ -.|+. .+.+..|. ..|+.|||.|-..
T Consensus 92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------------ 151 (344)
T 3r24_A 92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------------ 151 (344)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------------
T ss_pred HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------------
Confidence 3666543331 2245789999996 45552 33444665 6999999976431
Q ss_pred CCcEEEEEcccccccccCCCcccEEEEcCCCCCC-C---C---CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCcccc
Q 038076 196 GGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK-V---L---PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTY 268 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~-~---p---~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~ 268 (345)
++.+ .+.||..+.. ...+||+|+.|.....+ . + ........++-+++.|+|||.|++=+.....
T Consensus 152 da~~-~IqGD~~~~~--~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg------ 222 (344)
T 3r24_A 152 DADS-TLIGDCATVH--TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------ 222 (344)
T ss_dssp SSSE-EEESCGGGEE--ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------
T ss_pred CCCe-EEEccccccc--cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC------
Confidence 1223 4999977643 36889999999865421 1 1 1123456677889999999999998875543
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE
Q 038076 269 GAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 269 g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~ 301 (345)
.+.+..+++.|. .|..++
T Consensus 223 --------------~~~L~~lrk~F~-~VK~fK 240 (344)
T 3r24_A 223 --------------NADLYKLMGHFS-WWTAFV 240 (344)
T ss_dssp --------------CHHHHHHHTTEE-EEEEEE
T ss_pred --------------HHHHHHHHhhCC-eEEEEC
Confidence 123455677998 676665
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00071 Score=63.21 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=97.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~~~~~ 216 (345)
+.+..+|++|||+.|....+++......+|.++|+-..=- ..|... ..+.-+-++++.+ |.+.. .+.+
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h-------e~P~~~-~ql~w~lV~~~~~~Dv~~l---~~~~ 160 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH-------EEPQLV-QSYGWNIVTMKSGVDVFYR---PSEC 160 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS-------CCCCCC-CBTTGGGEEEECSCCTTSS---CCCC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc-------cCcchh-hhcCCcceEEEeccCHhhC---CCCC
Confidence 3456799999999999999888766667899999844311 000000 0111234777777 76543 3377
Q ss_pred ccEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCC-cEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 217 YAGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPN-GRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pg-Gvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
+|+|+||+-.....| ++--|...++.+.+.|++| |-+++-+..+-. ....+.+..|+..|
T Consensus 161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~-----------------~~v~e~l~~lq~~f 223 (321)
T 3lkz_A 161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM-----------------PKVIEKMELLQRRY 223 (321)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS-----------------HHHHHHHHHHHHHH
T ss_pred CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC-----------------hHHHHHHHHHHHHh
Confidence 999999997432222 1223455778888999999 999998887754 23558889999999
Q ss_pred CCCEEEEEecCCCCc--eEEEEeCCCCC
Q 038076 294 PGKVSWKRMPERNGE--NFLALTGLLPD 319 (345)
Q Consensus 294 ~~~v~~~~~~~~~~~--n~v~~a~~~p~ 319 (345)
.+ +.+ +.|...+. -+..+.+...+
T Consensus 224 gg-~lv-r~P~SRnst~EmY~vsGa~gN 249 (321)
T 3lkz_A 224 GG-GLV-RNPLSRNSTHEMYWVSRASGN 249 (321)
T ss_dssp CC-EEE-CCTTSCTTCCCEEEETTCCSC
T ss_pred CC-EeE-eCCCCCCCcceEEEEecCCCC
Confidence 94 443 45643322 24555555544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0012 Score=66.75 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=76.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhC----C---------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW----P---------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~----p---------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
+..+|++-.||+|++...+.++. . ...+.++|+|+....+|+-++-+.. ...-++..+|.
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-------~~~~~I~~~dt 289 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-------LEYPRIDPENS 289 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-------CSCCEEECSCT
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-------Ccccccccccc
Confidence 45689999999999987665431 1 2579999999999999997654332 12346788888
Q ss_pred cccccc---CCCcccEEEEcCCCCCC------------CCCCcchHHHHHHHHhccC-------CCcEEEEEecC
Q 038076 207 FSPSED---ASGRYAGIVVDLFSEGK------------VLPQLEEVATWLKLKDRLM-------PNGRFMVNCGG 259 (345)
Q Consensus 207 ~~~l~~---~~~~yD~Ii~D~f~~~~------------~p~~l~t~ef~~~~~~~L~-------pgGvlvvn~~~ 259 (345)
..+-.. ...+||+|+.+.+-+.. .+..-...-|++.+.+.|+ |||.+++-+..
T Consensus 290 L~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 290 LRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp TCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred ccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 764211 24589999997644321 1111233457888888886 79998876654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00023 Score=68.58 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=50.7
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
...|++||.|.|.+++.|++.....++++||+|+.+++.-++.+. .++++++++|+.++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~----------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----------GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----------TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc----------CCCEEEEECCccch
Confidence 367999999999999999986444689999999999999888762 35899999999876
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0058 Score=59.37 Aligned_cols=113 Identities=9% Similarity=-0.075 Sum_probs=77.1
Q ss_pred CCCEEEEeecccHHHHHHHHh-----------------CCCCEEEEEECC-----------HHHHHHHHHhcCCCCCCCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL-----------------WPSLKLEGWEID-----------EILIDKVRDYFGLSDLEKP 192 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~-----------------~p~~~v~~VEid-----------p~vi~~A~~~f~~~~~~~~ 192 (345)
+-+|+++||++|..+..+... .|..+|...|+- |...+-.++..+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 567999999999877765543 366888899987 7766665554331
Q ss_pred CCCCCcEEEEEccccccccc--CCCcccEEEEcCCCCC--CCCCCcch--------------------------------
Q 038076 193 TATGGVLQVHIGDVFSPSED--ASGRYAGIVVDLFSEG--KVLPQLEE-------------------------------- 236 (345)
Q Consensus 193 ~~~~~rv~v~~gDa~~~l~~--~~~~yD~Ii~D~f~~~--~~p~~l~t-------------------------------- 236 (345)
..+-.++.|.+.+|-.+ +.+++|+|+...--++ .+|..+..
T Consensus 127 ---~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D 203 (384)
T 2efj_A 127 ---KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKD 203 (384)
T ss_dssp ---CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHH
Confidence 12346778888887544 6789999998654443 13333221
Q ss_pred -HHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 237 -VATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 237 -~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..|++..++-|+|||.+++.+.+...
T Consensus 204 ~~~FL~~Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 204 FTTFLRIHSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHhccCCeEEEEEecCCC
Confidence 12366778899999999999987765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0009 Score=63.82 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=60.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---cC-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---DA- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~~- 213 (345)
.+...+++..+|+|..+..+++.. |..+|+++|.||+.++.|+ .+ . ++|+++++++..++.+ ..
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--------~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--------DPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--------CTTEEEEESCGGGHHHHHHHTT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--------CCcEEEEeCCHHHHHHHHHhcC
Confidence 345679999999999999999874 6789999999999999995 33 1 4689999999888643 21
Q ss_pred -CCcccEEEEcC
Q 038076 214 -SGRYAGIVVDL 224 (345)
Q Consensus 214 -~~~yD~Ii~D~ 224 (345)
.+++|.|+.|+
T Consensus 125 ~~~~vDgILfDL 136 (347)
T 3tka_A 125 LIGKIDGILLDL 136 (347)
T ss_dssp CTTCEEEEEEEC
T ss_pred CCCcccEEEECC
Confidence 23699999987
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.003 Score=61.06 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=66.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+|++||++.|..+..+.++ +.+|++||+-|.--.+ . .+++++++.+|+..+.. ..+++|
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l-~-------------~~~~V~~~~~d~~~~~~-~~~~~D 272 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSL-M-------------DTGQVTWLREDGFKFRP-TRSNIS 272 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHH-H-------------TTTCEEEECSCTTTCCC-CSSCEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhh-c-------------cCCCeEEEeCccccccC-CCCCcC
Confidence 45678999999999999999875 6799999975421111 1 15789999999999753 356899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++|.-.. .--..+........+..++ .++|+--+.
T Consensus 273 ~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~-aI~~lKL~m 309 (375)
T 4auk_A 273 WMVCDMVEK-----PAKVAALMAQWLVNGWCRE-TIFNLKLPM 309 (375)
T ss_dssp EEEECCSSC-----HHHHHHHHHHHHHTTSCSE-EEEEEECCS
T ss_pred EEEEcCCCC-----hHHhHHHHHHHHhccccce-EEEEEEecc
Confidence 999997332 1122333333333333334 556764433
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=55.51 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=52.0
Q ss_pred CCCCCEEEEeeccc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||+||||.| ..+..|.+. .+..|+++||+|.-++ ++.+|..+-....-+.|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------------------~v~dDiF~P~~~~Y~~~ 90 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------------------IVRDDITSPRMEIYRGA 90 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------------------EECCCSSSCCHHHHTTE
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------------------eEEccCCCCcccccCCc
Confidence 34679999999999 599888864 3689999999886555 44456655322222589
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhcc
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRL 247 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L 247 (345)
|+|.. -.+|+++ ...+.++.+..
T Consensus 91 DLIYs-----irPP~El--~~~i~~lA~~v 113 (153)
T 2k4m_A 91 ALIYS-----IRPPAEI--HSSLMRVADAV 113 (153)
T ss_dssp EEEEE-----ESCCTTT--HHHHHHHHHHH
T ss_pred CEEEE-----cCCCHHH--HHHHHHHHHHc
Confidence 99963 1334444 23445555444
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0095 Score=57.64 Aligned_cols=122 Identities=10% Similarity=-0.056 Sum_probs=72.8
Q ss_pred CCCEEEEeecccHHHHHH--------HHh-------CCCCEEEEEECCHHHHHHHHHhcCC-CC-C---CCCCCCCCcEE
Q 038076 141 NGPIAIYGLGGGTAAHLM--------LDL-------WPSLKLEGWEIDEILIDKVRDYFGL-SD-L---EKPTATGGVLQ 200 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l--------~~~-------~p~~~v~~VEidp~vi~~A~~~f~~-~~-~---~~~~~~~~rv~ 200 (345)
+-+|+++|||+|..+..+ .+. .|..+|...|+-..-...-=+.+.. .. . .+......+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 568999999999877765 222 2678888888866554332222211 00 0 00000011223
Q ss_pred EEEccccccccc--CCCcccEEEEcCCCCC--CCCCCcc--------------------------------hHHHHHHHH
Q 038076 201 VHIGDVFSPSED--ASGRYAGIVVDLFSEG--KVLPQLE--------------------------------EVATWLKLK 244 (345)
Q Consensus 201 v~~gDa~~~l~~--~~~~yD~Ii~D~f~~~--~~p~~l~--------------------------------t~ef~~~~~ 244 (345)
++.+.+.+|-.+ +++++|+|+...--++ .+|..+. -..|++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766433 5789999998654443 1232221 123677789
Q ss_pred hccCCCcEEEEEecCCCC
Q 038076 245 DRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 245 ~~L~pgGvlvvn~~~~~~ 262 (345)
+-|+|||.+++.+.+...
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHEEEEEEEEEEEEECCC
T ss_pred HHhCCCCEEEEEEecCCC
Confidence 999999999999886654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.03 Score=51.32 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=86.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-------CCCCEEEEEE-----CCHH-----------------------HHHHH--H
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-------WPSLKLEGWE-----IDEI-----------------------LIDKV--R 181 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-------~p~~~v~~VE-----idp~-----------------------vi~~A--~ 181 (345)
.-|..|+++|+--|.....+.+. .+..+|.+.| .++. +-++. +
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 35789999999877666554431 3568899998 3321 11111 1
Q ss_pred HhcCCCCCCCCCCCCCcEEEEEccccccccc-----CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 182 DYFGLSDLEKPTATGGVLQVHIGDVFSPSED-----ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 182 ~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-----~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+.+..-+ ..+++++++.||+.+.|.. ...++|+|++|+.. + -.+...++.+..+|+|||++++.
T Consensus 148 ~~~~~~g-----~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y----~~t~~~le~~~p~l~~GGvIv~D 216 (257)
T 3tos_A 148 ECSDFFG-----HVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y----EPTKAVLEAIRPYLTKGSIVAFD 216 (257)
T ss_dssp HTTSTTT-----TSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H----HHHHHHHHHHGGGEEEEEEEEES
T ss_pred hhhhhcC-----CCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c----chHHHHHHHHHHHhCCCcEEEEc
Confidence 1221101 1247899999999988754 34579999999732 1 13567899999999999999975
Q ss_pred ecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC-CEEEEEecCCC
Q 038076 257 CGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG-KVSWKRMPERN 306 (345)
Q Consensus 257 ~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~-~v~~~~~~~~~ 306 (345)
=..... | ..+.+++.+.+.. .+.+.++|...
T Consensus 217 D~~~~~--------w-----------~G~~~A~~ef~~~~~~~i~~~p~~~ 248 (257)
T 3tos_A 217 ELDNPK--------W-----------PGENIAMRKVLGLDHAPLRLLPGRP 248 (257)
T ss_dssp STTCTT--------C-----------THHHHHHHHHTCTTSSCCEECTTCS
T ss_pred CCCCCC--------C-----------hHHHHHHHHHHhhCCCeEEEccCCC
Confidence 443221 1 1455666777653 23444666443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0063 Score=56.65 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=39.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
+...||+++||+|+++..+.+. +.+++++|+||.++++|++.+.
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 5578999999999999998874 5799999999999999998874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0068 Score=57.09 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=64.8
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---cccccccccCC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~~~ 214 (345)
.+..+||++|+|+ |..+.++++.. +.+|++++.+++-.+.+++. +.. .++. .|..+.+....
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL-GAE------------VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-TCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc-CCC------------EEEeCCCcCHHHHHHHhC
Confidence 4568899999875 88888888775 46999999999999999874 321 1221 12222232223
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+...- ..+.++.+.+.|+++|.++.
T Consensus 231 g~~d~vid~~g----------~~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 231 GGAHGVLVTAV----------SPKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp SSEEEEEESSC----------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEEeCC----------CHHHHHHHHHHhccCCEEEE
Confidence 47999985432 24578889999999999874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.033 Score=52.82 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+|+ |.++.++++.....+|.+++.+++-.+.+++. . .. -+.... .|..+-+..
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~~---------~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-PE---------VVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-TT---------CEEEECCSCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-hh---------cccccccccchHHHHHHHHH
Confidence 4678999999864 77777888776444599999999999999987 4 11 122221 122222222
Q ss_pred --CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 --ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 --~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+--. . ..+.++.+.+.|+++|.+++
T Consensus 247 ~t~g~g~Dvvid~~-g---------~~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 247 SFGGIEPAVALECT-G---------VESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp HTSSCCCSEEEECS-C---------CHHHHHHHHHHSCTTCEEEE
T ss_pred HhCCCCCCEEEECC-C---------ChHHHHHHHHHhcCCCEEEE
Confidence 256899998422 1 13468888999999999874
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.013 Score=56.30 Aligned_cols=117 Identities=12% Similarity=-0.048 Sum_probs=77.8
Q ss_pred CCCCEEEEeecccHHHHH--------HHH--------hCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE
Q 038076 140 PNGPIAIYGLGGGTAAHL--------MLD--------LWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI 203 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~--------l~~--------~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~ 203 (345)
++-+|+++||++|..+.. +.+ ..|..+|...|+-.......-+.+.. .. ...+-.++.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~--~~----~~~~~~f~~ 124 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI--EN----DVDGVCFIN 124 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTT--SC----SCTTCEEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcch--hc----ccCCCEEEE
Confidence 346799999999954433 222 14668999999988888877665431 10 011346778
Q ss_pred ccccccccc--CCCcccEEEEcCCCCC--CCCCC--------------------cch-------HHHHHHHHhccCCCcE
Q 038076 204 GDVFSPSED--ASGRYAGIVVDLFSEG--KVLPQ--------------------LEE-------VATWLKLKDRLMPNGR 252 (345)
Q Consensus 204 gDa~~~l~~--~~~~yD~Ii~D~f~~~--~~p~~--------------------l~t-------~ef~~~~~~~L~pgGv 252 (345)
|.+.+|-.+ +.+++|+|+...--++ .+|.. .|. ..|++..++-|+|||.
T Consensus 125 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred ecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 888887544 6789999997554332 12222 111 2457788899999999
Q ss_pred EEEEecCCCC
Q 038076 253 FMVNCGGIDG 262 (345)
Q Consensus 253 lvvn~~~~~~ 262 (345)
+++.+.+...
T Consensus 205 mvl~~~gr~~ 214 (359)
T 1m6e_X 205 MVLTILGRRS 214 (359)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEecCCC
Confidence 9999887654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.016 Score=55.17 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=63.0
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-C
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED-A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~-~ 213 (345)
.+..+||++|+|+ |..+.++++.....+|+++|.+++-.+.++++ +.. .++.. |..+-+.. .
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------------~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT------------HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCC------------EEecCCccCHHHHHHHhc
Confidence 4568899999875 77777777765434799999999999999875 321 12221 22222221 2
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.+|+||--. . ..+.++.+.+.|+++|.+++
T Consensus 256 ~gg~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 256 DGGVNFALEST-G---------SPEILKQGVDALGILGKIAV 287 (371)
T ss_dssp TSCEEEEEECS-C---------CHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCcEEEECC-C---------CHHHHHHHHHHHhcCCEEEE
Confidence 33799998422 1 13568889999999999875
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.063 Score=43.77 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
..+|+++|+| |..+++.|.+ .+.+|+++|.|++.++.+++. .+.++.+|+.+- ++. .-+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~~--------------g~~~i~gd~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRER--------------GVRAVLGNAANEEIMQLAHLE 70 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHT--------------TCEEEESCTTSHHHHHHTTGG
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHc--------------CCCEEECCCCCHHHHHhcCcc
Confidence 4689999998 3455555554 357899999999999887762 256788998653 332 236
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..|+|++-..+. ......-...+.+.|+..++.-.
T Consensus 71 ~ad~vi~~~~~~-------~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 71 CAKWLILTIPNG-------YEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp GCSEEEECCSCH-------HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred cCCEEEEECCCh-------HHHHHHHHHHHHHCCCCeEEEEE
Confidence 799999743321 11222334556678887766544
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.053 Score=51.55 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=80.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCcc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGRY 217 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~y 217 (345)
+.+|+++-||.|.+...+.+.-- -..+.++|+|+..++..+.++.. ..++.+|..++.... ...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------------~~~~~~Di~~~~~~~~~~~~~ 69 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------------TQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------------SCEECSCGGGCCHHHHHHHCC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------------cccccCCHHHccHhHcCcCCc
Confidence 45799999999999998887521 24799999999999999998851 236789998874321 1269
Q ss_pred cEEEEcCCCCCC-CC---CCc------chHHHHHHHHhccC--CCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHH
Q 038076 218 AGIVVDLFSEGK-VL---PQL------EEVATWLKLKDRLM--PNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSA 285 (345)
Q Consensus 218 D~Ii~D~f~~~~-~p---~~l------~t~ef~~~~~~~L~--pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~ 285 (345)
|+|+.+.+..+. .. ..+ .-.++++ +.+.++ |.=+++=|+.+-... ..++.+
T Consensus 70 D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~~~~~ENV~~l~~~----------------~~~~~i 132 (343)
T 1g55_A 70 DMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPKYILLENVKGFEVS----------------STRDLL 132 (343)
T ss_dssp SEEEECCC------------------CHHHHHHH-HGGGCSSCCSEEEEEEETTGGGS----------------HHHHHH
T ss_pred CEEEEcCCCcchhhcCCcCCccCccchHHHHHHH-HHHHhcCCCCEEEEeCCccccCH----------------HHHHHH
Confidence 999998754321 00 001 1123333 445677 888888788864321 346667
Q ss_pred HHHHHHH
Q 038076 286 IRALSEA 292 (345)
Q Consensus 286 ~~~l~~~ 292 (345)
++.|.+.
T Consensus 133 ~~~l~~~ 139 (343)
T 1g55_A 133 IQTIENC 139 (343)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 7777653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.56 E-value=0.19 Score=47.50 Aligned_cols=123 Identities=11% Similarity=-0.051 Sum_probs=83.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..+++++.+|+|.+...+.+. +-..+.++|+|+..++..+.++... . .+|..++....-..+|+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~---------~-----~~Di~~~~~~~~~~~D~l 75 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK---------P-----EGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC---------C-----BSCGGGSCGGGSCCCSEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC---------C-----cCCHHHcCHhhCCCCCEE
Confidence 457999999999999988764 3456888999999999999988521 1 589888765444569999
Q ss_pred EEcCCCCCC--------C--CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHH
Q 038076 221 VVDLFSEGK--------V--LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALS 290 (345)
Q Consensus 221 i~D~f~~~~--------~--p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~ 290 (345)
+.+.+..+. . +..-.-.++++.+ +.++|.=+++=|+.+-... ++...++.+++.|.
T Consensus 76 ~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~~~~~ENV~gl~~~-------------~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPKVVFMENVKNFASH-------------DNGNTLEVVKNTMN 141 (327)
T ss_dssp EEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCSEEEEEEEGGGGTG-------------GGGHHHHHHHHHHH
T ss_pred EECCCCCCcchhcccCCCcchhhHHHHHHHHHH-HhccCcEEEEeCcHHHHhc-------------cccHHHHHHHHHHH
Confidence 987655321 0 1111123445444 4579998888899865431 11245677777776
Q ss_pred HH
Q 038076 291 EA 292 (345)
Q Consensus 291 ~~ 292 (345)
+.
T Consensus 142 ~~ 143 (327)
T 2c7p_A 142 EL 143 (327)
T ss_dssp HT
T ss_pred hC
Confidence 54
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.011 Score=55.90 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=62.8
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-- 212 (345)
.+..+||++|+|+ |.++.++++.....+|.++|.+++-.+.+++. +.. .++. .|..+.+.+
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY-GAT------------DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH-TCC------------EEECGGGSCHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCc------------eEEcCCCcCHHHHHHHHc
Confidence 4678999999864 67777777765434899999999999999885 322 1221 122222221
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+|+- .... .+.++.+.+.|+++|.++.
T Consensus 232 ~g~g~D~v~d-~~g~---------~~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 232 DGKGVDKVVI-AGGD---------VHTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp TTCCEEEEEE-CSSC---------TTHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCEEEE-CCCC---------hHHHHHHHHHHhcCCEEEE
Confidence 2347999984 3221 1367888899999999874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.035 Score=52.08 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||++|+|+ |.++..+++...+.+|++++.+++-.+.+++... . .-+.....|..+.+.. ...
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga-~---------~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA-D---------VTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC-S---------EEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC-e---------EEEeCCCCCHHHHhhhhcCCC
Confidence 3567899999875 3555566666667999999999999999887543 1 1122222333333322 345
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.+|.++.+... .+.+..+.+.|+++|.+++-
T Consensus 232 g~d~~~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAVA----------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEeccC----------cchhheeheeecCCceEEEE
Confidence 67877765422 45788888999999998753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.03 Score=53.08 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=62.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc---cccc---cc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD---VFSP---SE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD---a~~~---l~ 211 (345)
.+..+||++|+|+ |..+.++++.....+|++++.+++-.+.++++ +.. .++..+ ..++ +.
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------------~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GAD------------LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS------------EEEECSSCCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------------EEEcCcccccchHHHHHH
Confidence 4567899999874 77777887776434999999999999999864 321 122211 1111 11
Q ss_pred c-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 212 D-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 212 ~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
. .++.+|+||--. . ..+.++.+.+.|+++|.++.
T Consensus 237 ~~~~~g~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 237 GQLGCKPEVTIECT-G---------AEASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp HHHTSCCSEEEECS-C---------CHHHHHHHHHHSCTTCEEEE
T ss_pred HHhCCCCCEEEECC-C---------ChHHHHHHHHHhcCCCEEEE
Confidence 1 235799998422 1 13467888899999999874
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.025 Score=54.11 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=64.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc----cC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE----DA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~----~~ 213 (345)
.+..+||++|+|+ |.++.++++.....+|.+++.+++-.+.++++ +... -+.....|..+.+. ..
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~---------vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GATA---------TVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCSE---------EECTTSSCHHHHHHSTTSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCCE---------EECCCCcCHHHHHHhhhhcc
Confidence 4568999999864 77777888776545999999999999999884 4221 00000122222222 12
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.+|+||--. . ..+.++.+.+.|+++|.+++
T Consensus 251 ~gg~Dvvid~~-G---------~~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 251 PGGVDVVIECA-G---------VAETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp TTCEEEEEECS-C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEEEECC-C---------CHHHHHHHHHHhccCCEEEE
Confidence 34899998422 1 13578889999999999875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.046 Score=51.39 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--cccccccc--C
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--DVFSPSED--A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--Da~~~l~~--~ 213 (345)
.+..+||++|+|+ |..+.++++...+.+|.++|.+++-.+.++++ +.. .++.. |..+.+.+ .
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-Ga~------------~~i~~~~~~~~~v~~~t~ 236 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-GAD------------AAVKSGAGAADAIRELTG 236 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-TCS------------EEEECSTTHHHHHHHHHG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC------------EEEcCCCcHHHHHHHHhC
Confidence 4567899999864 77777888776678999999999999999874 322 12211 11111211 2
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...+|+|+--. . ..+.++.+.+.|+++|.++.
T Consensus 237 g~g~d~v~d~~-G---------~~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 237 GQGATAVFDFV-G---------AQSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp GGCEEEEEESS-C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCeEEEECC-C---------CHHHHHHHHHHHhcCCEEEE
Confidence 34799988422 1 13578899999999999874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.057 Score=51.54 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|+|+ |.++.++++.. +.+|++++.+++-.+.+++ ++.. .++..+-.++++...+.+
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~-lGa~------------~vi~~~~~~~~~~~~~g~ 258 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA-LGAD------------EVVNSRNADEMAAHLKSF 258 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH-HTCS------------EEEETTCHHHHHTTTTCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCc------------EEeccccHHHHHHhhcCC
Confidence 4568899999874 67777777765 5689999999999999987 4422 122111112222223679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+||--. ... +.++.+.+.|+++|.++.
T Consensus 259 Dvvid~~-g~~---------~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 259 DFILNTV-AAP---------HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp EEEEECC-SSC---------CCHHHHHTTEEEEEEEEE
T ss_pred CEEEECC-CCH---------HHHHHHHHHhccCCEEEE
Confidence 9998432 211 135677789999998764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.25 Score=47.50 Aligned_cols=107 Identities=17% Similarity=-0.033 Sum_probs=74.8
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-------CC
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-------AS 214 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-------~~ 214 (345)
.++++|-||+|.+...+.+. .-..+.+||+|+..++..+.++. ...++.+|..++... ..
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~------------~~~~~~~DI~~~~~~~~~~~~~~~ 69 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFP------------RSLHVQEDVSLLNAEIIKGFFKND 69 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCT------------TSEEECCCGGGCCHHHHHHHHCSC
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCC------------CCceEecChhhcCHHHHHhhcccC
Confidence 47999999999999888765 33457799999999999988873 356788999886432 24
Q ss_pred CcccEEEEcCCCCCC-CC--CCc------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEGK-VL--PQL------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~-~p--~~l------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..+|+|+.+.+..+. .. ... .-.+++ .+.+.++|.=+++=|+.+--.
T Consensus 70 ~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~-~~v~~~~P~~~v~ENV~gl~s 125 (376)
T 3g7u_A 70 MPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFY-RLVSELQPLFFLAENVPGIMQ 125 (376)
T ss_dssp CCCCEEEECCCCCTTC-------CHHHHHHHHHHH-HHHHHHCCSEEEEEECTTTTC
T ss_pred CCeeEEEecCCCCCcccccCCCCCCchHHHHHHHH-HHHHHhCCCEEEEecchHhhc
Confidence 689999987765431 00 001 112333 344567999999889987654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.03 Score=52.73 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCC---CC-------cchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 194 ATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVL---PQ-------LEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 194 ~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p---~~-------l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+...+.+++++|+.+.++. .++++|+|++|.+-..... .. -.-.+.+..+++.|+|||.+++++...
T Consensus 10 ~~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 10 YTTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp EECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred eecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 3456799999999998765 4578999999964321110 00 023567888999999999999988754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.044 Score=52.32 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+| .|.++.++++.....+|.++|.+++-.+.+++. +... ++. .|..+.+..
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~------------vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-GVNE------------FVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-TCCE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCcE------------EEccccCchhHHHHHHH
Confidence 456899999986 367777777765444899999999999998874 3221 111 122222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.++.+|+||--. . ..+.++.+.+.|+++ |.+++
T Consensus 259 ~~~gg~D~vid~~-g---------~~~~~~~~~~~l~~g~G~iv~ 293 (378)
T 3uko_A 259 LTDGGVDYSFECI-G---------NVSVMRAALECCHKGWGTSVI 293 (378)
T ss_dssp HTTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred hcCCCCCEEEECC-C---------CHHHHHHHHHHhhccCCEEEE
Confidence 344899998422 1 135788899999997 98864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.077 Score=49.97 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|+|+ |..+.++++.. +.+|++++.+++-.+.+++ ++.. .++ .|... +. +.+
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~-lGa~------------~v~-~~~~~-~~---~~~ 235 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS-MGVK------------HFY-TDPKQ-CK---EEL 235 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH-TTCS------------EEE-SSGGG-CC---SCE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh-cCCC------------eec-CCHHH-Hh---cCC
Confidence 4678999999864 77777777765 4699999999999999987 4422 122 34322 22 289
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|+- ..... +.++.+.+.|+++|.++.
T Consensus 236 D~vid-~~g~~---------~~~~~~~~~l~~~G~iv~ 263 (348)
T 3two_A 236 DFIIS-TIPTH---------YDLKDYLKLLTYNGDLAL 263 (348)
T ss_dssp EEEEE-CCCSC---------CCHHHHHTTEEEEEEEEE
T ss_pred CEEEE-CCCcH---------HHHHHHHHHHhcCCEEEE
Confidence 99984 32211 136778889999999875
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.068 Score=50.07 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=63.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| .|.++.++++......+.+++.+++-.+.++++ +... -+.....|..+..+. ...
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l-Ga~~---------~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF-GAMQ---------TFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCSE---------EEETTTSCHHHHHHHHGGGC
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc-CCeE---------EEeCCCCCHHHHHHhhcccC
Confidence 466889999986 456666777777667889999999999999885 3221 111111122222211 245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.+|+|+-.. . ..+.++.+.+.|+++|.+++-
T Consensus 229 g~d~v~d~~-G---------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETA-G---------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECS-C---------SHHHHHHHHHHCCTTCEEEEC
T ss_pred Ccccccccc-c---------ccchhhhhhheecCCeEEEEE
Confidence 678777432 1 135788888999999998753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.24 Score=41.88 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=57.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccC--C
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDA--S 214 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~--~ 214 (345)
..+|+++|+| |..+++.|.+. .+.+|+++|.|++-++.+++. + +.++.+|+.+ .+... -
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~-~g~~V~vid~~~~~~~~~~~~-g-------------~~~~~gd~~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRAR-YGKISLGIEIREEAAQQHRSE-G-------------RNVISGDATDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHHHT-T-------------CCEEECCTTCHHHHHTBCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-cCCeEEEEECCHHHHHHHHHC-C-------------CCEEEcCCCCHHHHHhccCC
Confidence 4689999987 33444555442 146899999999988877652 2 3466777654 23332 4
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+.+|+|++-..+. -.... .-...+.+.|++.+++..
T Consensus 104 ~~ad~vi~~~~~~------~~~~~-~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 104 GHVKLVLLAMPHH------QGNQT-ALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp CCCCEEEECCSSH------HHHHH-HHHHHHHTTCCSEEEEEE
T ss_pred CCCCEEEEeCCCh------HHHHH-HHHHHHHHCCCCEEEEEE
Confidence 5799999743221 12222 333455677787777644
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.038 Score=53.21 Aligned_cols=102 Identities=14% Similarity=0.004 Sum_probs=64.0
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccc-cccccc-
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDV-FSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa-~~~l~~- 212 (345)
.+..+||++|+|+ |.++.++++.....+|+++|.+++-.+.++++ +. +++. .|. .+.+..
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-------------~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-GF-------------ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-TC-------------EEEETTSSSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC-------------cEEcCCCcchHHHHHHHH
Confidence 3567899999875 77788888765434999999999999999864 32 1221 122 222221
Q ss_pred -CCCcccEEEEcCCCCCCC---C--CCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKV---L--PQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~---p--~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+||--.... .. + .++...+.++.+.+.|+++|.+++
T Consensus 250 ~~g~g~Dvvid~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFE-AHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp HSSSCEEEEEECSCTT-CBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred hCCCCCCEEEECCCCc-cccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 234799998433221 10 0 011123468888899999999863
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.18 Score=47.10 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=63.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCCCccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~~~yD 218 (345)
++|.+||+| |+.+++.+.+.....+|.++|.+++-++.+++. +.. .-...|..+ . -+..|
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~------------~~~~~~~~~~~----~~~aD 96 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII------------DEGTTSIAKVE----DFSPD 96 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC------------SEEESCTTGGG----GGCCS
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCc------------chhcCCHHHHh----hccCC
Confidence 689999999 778888877642224899999999998888764 211 011233333 2 24689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+-+ |.. ...+.++.+...|+++.++ +++.+..
T Consensus 97 vVilav------p~~-~~~~vl~~l~~~l~~~~iv-~d~~Svk 131 (314)
T 3ggo_A 97 FVMLSS------PVR-TFREIAKKLSYILSEDATV-TDQGSVK 131 (314)
T ss_dssp EEEECS------CGG-GHHHHHHHHHHHSCTTCEE-EECCSCC
T ss_pred EEEEeC------CHH-HHHHHHHHHhhccCCCcEE-EECCCCc
Confidence 999844 222 3567888999889887655 5655433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.045 Score=50.76 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=44.0
Q ss_pred CCcEEEEEccccccccc-CCCcccEEEEcCCCCCC--C---CCCc--------c---hHHHHHHHHhccCCCcEEEEEec
Q 038076 196 GGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGK--V---LPQL--------E---EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~--~---p~~l--------~---t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
..+++++++|..+++.. .+++||+|+.|.+-... . +..+ + -.+.++++++.|+|||.+++++.
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 45789999999998765 35789999998643211 0 1110 0 12456789999999999999887
Q ss_pred C
Q 038076 259 G 259 (345)
Q Consensus 259 ~ 259 (345)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.11 Score=49.08 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=61.4
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE----ccccccccc-
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI----GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~----gDa~~~l~~- 212 (345)
.+..+||++|+|+ |..+..+++.. +.+|.+++.+++-.+.+++. +.. .++. .|..+-+..
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC-GAD------------VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-TCS------------EEEECCTTTSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-CCC------------EEEcCcccccHHHHHHHH
Confidence 4568899999764 66777777765 46799999999999999864 321 1221 122222211
Q ss_pred C----CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 A----SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~----~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
. .+.+|+||--. . ..+.++.+.+.|+++|.++.
T Consensus 233 ~~~~~g~g~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCS-G---------NEKCITIGINITRTGGTLML 269 (352)
T ss_dssp HHHHSSSCCSEEEECS-C---------CHHHHHHHHHHSCTTCEEEE
T ss_pred hccccCCCCCEEEECC-C---------CHHHHHHHHHHHhcCCEEEE
Confidence 1 35799998422 1 12467888899999999874
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.25 Score=40.59 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=60.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECC-HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEID-EILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-AS 214 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEid-p~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~ 214 (345)
.++|+++|+| |..+++.|.+ .+.+|+++|.| ++-.+..++.+. ..+.++.+|+.+. +.. .-
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~~~~-----------~~~~~i~gd~~~~~~l~~a~i 69 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNLPEDDIKQLEQRLG-----------DNADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHC-----------TTCEEEESCTTSHHHHHHHTT
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECCChHHHHHHHHhhc-----------CCCeEEEcCCCCHHHHHHcCh
Confidence 4689999875 2234444443 25789999998 455544444332 2377899998752 322 24
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+..|+|++-..+. ..........+.+.|...+++.+...
T Consensus 70 ~~ad~vi~~~~~d-------~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 70 DRCRAILALSDND-------ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp TTCSEEEECSSCH-------HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred hhCCEEEEecCCh-------HHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 6799999744221 12334455566777887777655443
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.22 Score=47.20 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=61.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---ccc--
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~-- 212 (345)
.+..+||++|+|+ |..+..+++.. +.+|++++.+++-.+.++++ +.. .++..+..++ +..
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL-GAD------------HGINRLEEDWVERVYALT 253 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc-CCC------------EEEcCCcccHHHHHHHHh
Confidence 4568899999764 66777777765 56999999999999998874 422 1222221222 211
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..+.+|+|+--. .. +.++.+.+.|+++|.+++-
T Consensus 254 ~g~g~D~vid~~-g~----------~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 254 GDRGADHILEIA-GG----------AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TTCCEEEEEEET-TS----------SCHHHHHHHEEEEEEEEEE
T ss_pred CCCCceEEEECC-Ch----------HHHHHHHHHhhcCCEEEEE
Confidence 345799988533 21 1366777899999998753
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.025 Score=47.93 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----CC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA----SG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~----~~ 215 (345)
-+.-||++|+|.|-.=..+.+.+|+-+|.++|-. ..-| +. ..-|.-+++.||+++.+... +.
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~------~~~h---p~-----~~P~~e~~ilGdi~~tL~~~~~r~g~ 105 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERA------VASH---PD-----STPPEAQLILGDIRETLPATLERFGA 105 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESS------CCCC---GG-----GCCCGGGEEESCHHHHHHHHHHHHCS
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEee------eccC---CC-----CCCchHheecccHHHHHHHHHHhcCC
Confidence 4688999999999999999999999999999941 1111 11 11244568999999988653 45
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHH-HHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATW-LKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~-~~~~~~L~pgGvlvvn~ 257 (345)
+.-++=.|+-.+.. -....+...+ ..+...|.|||+++...
T Consensus 106 ~a~LaHaD~G~g~~-~~d~a~a~~lsplI~~~la~GGi~vS~~ 147 (174)
T 3iht_A 106 TASLVHADLGGHNR-EKNDRFARLISPLIEPHLAQGGLMVSSD 147 (174)
T ss_dssp CEEEEEECCCCSCH-HHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred ceEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 55566567644321 0111122222 25677899999997543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.29 Score=42.68 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=58.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCcc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRY 217 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~y 217 (345)
+|+++|+| |..+++.|.+ .+.+|+++|.|++.++...+..+ ..++.+|+.+. ++. .-+..
T Consensus 2 ~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~l~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLS--RKYGVVIINKDRELCEEFAKKLK-------------ATIIHGDGSHKEILRDAEVSKN 66 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHSS-------------SEEEESCTTSHHHHHHHTCCTT
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHcC-------------CeEEEcCCCCHHHHHhcCcccC
Confidence 68999976 3344555544 35789999999998886554432 56889998763 222 34689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|++-..+. ..........+.+.+...++.-
T Consensus 67 d~vi~~~~~d-------~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 67 DVVVILTPRD-------EVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp CEEEECCSCH-------HHHHHHHHHHHHTSCCCEEEEC
T ss_pred CEEEEecCCc-------HHHHHHHHHHHHHcCCCeEEEE
Confidence 9999743221 2233455555566676666543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.038 Score=52.05 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=61.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc-cccccc--CC
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV-FSPSED--AS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa-~~~l~~--~~ 214 (345)
+..+||++|+|+ |..+.++++.. |+.+|++++.+++-.+.+++. +.. .++.-+- .+++.. ..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~~~~~g 236 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-GAD------------YVSEMKDAESLINKLTDG 236 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TCS------------EEECHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CCC------------EEeccccchHHHHHhhcC
Confidence 678999999863 66666776653 467999999999999999874 422 1121100 112211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+||--. . ..+.++.+.+.|+++|.++.
T Consensus 237 ~g~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 237 LGASIAIDLV-G---------TEETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp CCEEEEEESS-C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCccEEEECC-C---------ChHHHHHHHHHhhcCCEEEE
Confidence 4799998432 1 13468888899999999864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.069 Score=51.27 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=64.3
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---c-ccccccc-
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---D-VFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---D-a~~~l~~- 212 (345)
.+..+||++|+|+ |.++.++++.....+|.++|.+++-.+.++++ +. +++.- | ..+.+..
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-------------~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF-------------EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC-------------EEEETTSSSCHHHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CC-------------cEEccCCcchHHHHHHHH
Confidence 3567899999764 77788888876545899999999999999874 32 11211 1 1122221
Q ss_pred -CCCcccEEEEcCCCCCCC-----CCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKV-----LPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~-----p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+||--....... ..+....+.++.+.+.|+++|.+++
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 235799998433221000 0011123468888999999999864
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.095 Score=49.83 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+|+ |..+.++++.....+|++++.+++-.+.++++ +.. .++. .|..+.+..
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------------~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GAT------------ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------------EEEecccccchHHHHHHH
Confidence 4567899999763 66777777765434899999999999999863 422 1111 112222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.++.+|+||--. . ..+.++.+.+.|+++ |.++.
T Consensus 257 ~t~gg~Dvvid~~-g---------~~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 257 KTNGGVDYAVECA-G---------RIETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp HTTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HhCCCCCEEEECC-C---------CHHHHHHHHHHHhcCCCEEEE
Confidence 234899998422 1 135688889999999 99864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.1 Score=49.60 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=61.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+|+ |.++.++++.....+|++++.+++-.+.++++ +.. .++. .|..+.+..
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------------~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GAT------------DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc------------EEEccccccchHHHHHHH
Confidence 3567899999763 67777777776434899999999999999764 422 1111 112222211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.++.+|+||- ... ..+.++.+.+.|+++ |.+++
T Consensus 261 ~~~~g~Dvvid-~~G---------~~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 261 LTAGGVDYSLD-CAG---------TAQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp HHTSCBSEEEE-SSC---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HhCCCccEEEE-CCC---------CHHHHHHHHHHhhcCCCEEEE
Confidence 2347999984 211 135688889999999 99864
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.25 Score=47.54 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-- 212 (345)
.+..+||++|+|+ |..+.++++.....+|.+++.+++-.+.++++ +.. .++. .|..+.+..
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL-GAD------------HVIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCS------------EEECTTTSCHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCC------------EEEcCCCCCHHHHHHHHh
Confidence 4567899999863 67777777776545999999999999999875 322 1121 122222222
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc----CCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL----MPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L----~pgGvlvv 255 (345)
....+|+||--+ .. ....++.+.+.| +++|.+++
T Consensus 279 ~g~g~D~vid~~-g~--------~~~~~~~~~~~l~~~~~~~G~iv~ 316 (404)
T 3ip1_A 279 NGLGAKLFLEAT-GV--------PQLVWPQIEEVIWRARGINATVAI 316 (404)
T ss_dssp TTCCCSEEEECS-SC--------HHHHHHHHHHHHHHCSCCCCEEEE
T ss_pred CCCCCCEEEECC-CC--------cHHHHHHHHHHHHhccCCCcEEEE
Confidence 245799998422 11 112445555555 99999875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.11 Score=49.45 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-c----cccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-G----DVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-g----Da~~~l~~ 212 (345)
.+..+||++|+|+ |..+.++++.....+|++++.+++-.+.++++ +... ++. . |..+.+..
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~~------------vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GATD------------FVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCCE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCce------------EEeccccchhHHHHHHH
Confidence 3567899999764 66777777765434899999999999999864 4221 111 1 11122211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.++.+|+||--. . ..+.++.+.+.|+++ |.++.
T Consensus 258 ~~~~g~D~vid~~-g---------~~~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 258 MTNGGVDFSLECV-G---------NVGVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp HHTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HhCCCCCEEEECC-C---------CHHHHHHHHHHhhcCCcEEEE
Confidence 234799998422 1 135688889999999 99864
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.17 Score=48.26 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++++|+++|+| .|..+..+++..+ .+|+++|.+++-.+.+++.++. .+..+..+..++ ...-..+|
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G-a~V~v~dr~~~r~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~D 232 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS-----------RVELLYSNSAEI-ETAVAEAD 232 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG-----------GSEEEECCHHHH-HHHHHTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhhCc-----------eeEeeeCCHHHH-HHHHcCCC
Confidence 45899999985 3444445555544 5999999999998888776531 122222221111 11113689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||.-...+....+.+.+.+ ..+.|+++|+++ ++..
T Consensus 233 vVI~~~~~~~~~~~~li~~~----~~~~~~~g~~iv-dv~~ 268 (361)
T 1pjc_A 233 LLIGAVLVPGRRAPILVPAS----LVEQMRTGSVIV-DVAV 268 (361)
T ss_dssp EEEECCCCTTSSCCCCBCHH----HHTTSCTTCEEE-ETTC
T ss_pred EEEECCCcCCCCCCeecCHH----HHhhCCCCCEEE-EEec
Confidence 99864433322223333433 446788988764 5554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.48 Score=37.45 Aligned_cols=90 Identities=19% Similarity=0.037 Sum_probs=53.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cc-cCCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SE-DASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~-~~~~~ 216 (345)
.+|+++|+| |..++..+.+ .+.+|+++|.+++..+..++.++ +.++.+|..+. +. ..-+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~d~~~~~~l~~~~~~~ 69 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAEID-------------ALVINGDCTKIKTLEDAGIED 69 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCS-------------SEEEESCTTSHHHHHHTTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHhcC-------------cEEEEcCCCCHHHHHHcCccc
Confidence 579999876 2234444443 25789999999998776655332 34566776432 22 12357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
+|+|++-..+ . ........+.+.++++-++
T Consensus 70 ~d~vi~~~~~------~-~~~~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 70 ADMYIAVTGK------E-EVNLMSSLLAKSYGINKTI 99 (140)
T ss_dssp CSEEEECCSC------H-HHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEeeCC------c-hHHHHHHHHHHHcCCCEEE
Confidence 9999985322 1 1223444555567776443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.79 E-value=0.13 Score=48.99 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=61.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+|+ |..+.++++.....+|++++.+++-.+.++++ +.. .++. .|..+.+..
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GAT------------ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc------------eEecccccchhHHHHHHH
Confidence 3567899999764 67777777765434899999999999998763 422 1111 111222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.+..+|+||--. . ..+.++.+.+.|+++ |.++.
T Consensus 257 ~~~~g~D~vid~~-g---------~~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 257 MSNGGVDFSFEVI-G---------RLDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp HTTSCBSEEEECS-C---------CHHHHHHHHHHBCTTTCEEEE
T ss_pred HhCCCCcEEEECC-C---------CHHHHHHHHHHhhcCCcEEEE
Confidence 234799998422 1 135688888999999 99864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.093 Score=44.95 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=56.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+.++||+.|+ |.|.....+++.. +.+|.+++.+++..+.+++. +.. ..+.....|..+.+.. ..
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~-g~~---------~~~d~~~~~~~~~~~~~~~~ 105 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL-GVE---------YVGDSRSVDFADEILELTDG 105 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT-CCS---------EEEETTCSTHHHHHHHHTTT
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCC---------EEeeCCcHHHHHHHHHHhCC
Confidence 45678999995 3455555555443 57999999999988887653 311 0010001111111211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+++..+ . .+.++.+.+.|+++|.++.
T Consensus 106 ~~~D~vi~~~-g----------~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 106 YGVDVVLNSL-A----------GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp CCEEEEEECC-C----------THHHHHHHHTEEEEEEEEE
T ss_pred CCCeEEEECC-c----------hHHHHHHHHHhccCCEEEE
Confidence 4699998532 1 1467888899999998864
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.11 Score=49.21 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----ccccccccc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~ 212 (345)
.+..+||++|+|+ |.++.++++.....+|++++.+++-.+.++++ +... ++. .|..+.+..
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~~------------vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GATE------------CINPQDFSKPIQEVLIE 255 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCce------------EeccccccccHHHHHHH
Confidence 3567899999763 66777777765434899999999999999864 4221 111 111222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
.++.+|+||--. . ..+.++.+.+.|+++ |.++.
T Consensus 256 ~~~~g~D~vid~~-g---------~~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 256 MTDGGVDYSFECI-G---------NVKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp HTTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HhCCCCCEEEECC-C---------cHHHHHHHHHhhccCCcEEEE
Confidence 234799998422 1 135688889999999 99864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.21 Score=48.69 Aligned_cols=95 Identities=17% Similarity=0.301 Sum_probs=64.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
..+|+++|+| |-.+++.|.+ .+..|++||.||+.++.+++. + +.++.||+.+. |+. .-+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~~-g-------------~~vi~GDat~~~~L~~agi~ 67 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRKF-G-------------MKVFYGDATRMDLLESAGAA 67 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHT-T-------------CCCEESCTTCHHHHHHTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHhC-C-------------CeEEEcCCCCHHHHHhcCCC
Confidence 4689999998 3345555554 358899999999999988763 2 45789999873 333 346
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+.|+|++-..+. ..........+.+.|+..+++-..
T Consensus 68 ~A~~viv~~~~~-------~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 68 KAEVLINAIDDP-------QTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp TCSEEEECCSSH-------HHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCEEEECCCCh-------HHHHHHHHHHHHhCCCCeEEEEEC
Confidence 899999854331 223344555667888877766444
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.068 Score=50.33 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=61.0
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--C
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED--A 213 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~--~ 213 (345)
+..+||++|+|+ |..+..+++.....+|++++.+++-.+.++++ +... ++. .|..+.+.+ .
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga~~------------~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GADY------------VINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TCSE------------EECTTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE------------EECCCCcCHHHHHHHHcC
Confidence 668999999853 66677777765433899999999999998864 3211 111 122222221 2
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...+|+||--.. ..+.++.+.+.|+++|.++.
T Consensus 234 g~g~D~vid~~g----------~~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 234 GNGVDVFLEFSG----------APKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp TSCEEEEEECSC----------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEEEECCC----------CHHHHHHHHHHHhcCCEEEE
Confidence 347999984321 13567888899999998764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.075 Score=48.22 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.+...||+..||+|+++..+.+. +.++.++|++|..+++|++.+.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 35578999999999999998875 5799999999999999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.062 Score=50.85 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=57.9
Q ss_pred CCEEEEeec-ccHHH-HHHH-HhCCCCEEEEEECCHH---HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 142 GPIAIYGLG-GGTAA-HLML-DLWPSLKLEGWEIDEI---LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 142 ~~VLiIG~G-~G~~~-~~l~-~~~p~~~v~~VEidp~---vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+||++|+| .|.++ .+++ +.....+|++++.+++ -.+.+++ ++... +.....|..+ +....+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~-lGa~~----------v~~~~~~~~~-i~~~~g 241 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE-LDATY----------VDSRQTPVED-VPDVYE 241 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH-TTCEE----------EETTTSCGGG-HHHHSC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH-cCCcc----------cCCCccCHHH-HHHhCC
Confidence 799999975 36666 6777 6544334999999998 8888876 34211 1000112223 222123
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+||- ... ..+.++.+.+.|+++|.++.
T Consensus 242 g~Dvvid-~~g---------~~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 242 QMDFIYE-ATG---------FPKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp CEEEEEE-CSC---------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEE-CCC---------ChHHHHHHHHHHhcCCEEEE
Confidence 7999884 221 12467888899999999874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.094 Score=49.86 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCEEEEe-e-cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 140 PNGPIAIYG-L-GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 140 ~p~~VLiIG-~-G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
+..+||++| + |.|.++.++++...+.+|.+++.+++-.+.+++ ++... ++. .|..+-+.. ..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lGad~------------vi~~~~~~~~~v~~~~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LGAHH------------VIDHSKPLAAEVAALGL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TTCSE------------EECTTSCHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cCCCE------------EEeCCCCHHHHHHHhcC
Confidence 346899999 3 357777788876567899999999999999987 44221 111 121122222 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+-.. . ..+.++.+.+.|+++|.++.
T Consensus 238 ~g~Dvvid~~-g---------~~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 238 GAPAFVFSTT-H---------TDKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp CCEEEEEECS-C---------HHHHHHHHHHHSCTTCEEEE
T ss_pred CCceEEEECC-C---------chhhHHHHHHHhcCCCEEEE
Confidence 6899887421 1 23578889999999999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.21 Score=41.20 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=55.4
Q ss_pred CCCCCEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccC-
Q 038076 139 VPNGPIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDA- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~- 213 (345)
.+..+|+++|+|. | .++..+.+ .+.+|+++|.+++.++.+++. ....++.+|..+ .+...
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~-------------~g~~~~~~d~~~~~~l~~~~ 81 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNSE-------------FSGFTVVGDAAEFETLKECG 81 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCTT-------------CCSEEEESCTTSHHHHHTTT
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHhc-------------CCCcEEEecCCCHHHHHHcC
Confidence 4567899999862 3 33444443 256999999998765543211 124466677543 22222
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
-+.+|+|++-..+. ........+.+.+.+...++....
T Consensus 82 ~~~ad~Vi~~~~~~-------~~~~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 82 MEKADMVFAFTNDD-------STNFFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp GGGCSEEEECSSCH-------HHHHHHHHHHHHTSCCSEEEEECS
T ss_pred cccCCEEEEEeCCc-------HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35799999744221 122334445555666666665544
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.19 Score=47.49 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||++|+| .|..+.++++.. +.+|++++.+++-.+.+++.++... ++..+-.+.+....+.+|
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~------------vi~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADD------------YVIGSDQAKMSELADSLD 246 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSC------------EEETTCHHHHHHSTTTEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCce------------eeccccHHHHHHhcCCCC
Confidence 56789999975 356666666654 4699999999998888886666321 111111122222234799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+--. ... +.++.+.+.|+++|.++.
T Consensus 247 ~vid~~-g~~---------~~~~~~~~~l~~~G~iv~ 273 (357)
T 2cf5_A 247 YVIDTV-PVH---------HALEPYLSLLKLDGKLIL 273 (357)
T ss_dssp EEEECC-CSC---------CCSHHHHTTEEEEEEEEE
T ss_pred EEEECC-CCh---------HHHHHHHHHhccCCEEEE
Confidence 988422 211 124556688999999864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.068 Score=50.36 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=46.7
Q ss_pred CCcEEEE-Eccccccccc-CCCcccEEEEcCCCCCCC-----CCCc--chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 196 GGVLQVH-IGDVFSPSED-ASGRYAGIVVDLFSEGKV-----LPQL--EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 196 ~~rv~v~-~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~-----p~~l--~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+...+++ ++|+.++++. .++++|+|++|.+-.... ...+ ...+.+..+++.|+|||.+++++...
T Consensus 36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 4567888 9999998876 356899999997432210 0111 23567788899999999999987643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.055 Score=49.13 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=42.4
Q ss_pred EEEEEccccccccc-CCCcccEEEEcCCCCCCC--CCCc--------chHHHHHHHHhccCCCcEEEEEe
Q 038076 199 LQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKV--LPQL--------EEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 199 v~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~--p~~l--------~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.+++.+|+.++++. .++++|+|++|.+-.... ...+ +..+.++.+++.|+|+|.++++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46899999998876 346899999997432110 0111 33566788899999999998876
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.12 Score=48.82 Aligned_cols=95 Identities=16% Similarity=0.067 Sum_probs=58.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc-cccccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF-SPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~-~~l~~~~~~ 216 (345)
.+..+||++|+| .|..+..+++.. +.+|++++.+++-.+.+++ ++.. .++..+-. ++.+...+.
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~-lGa~------------~v~~~~~~~~~~~~~~~~ 243 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK-MGAD------------HYIATLEEGDWGEKYFDT 243 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH-HTCS------------EEEEGGGTSCHHHHSCSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH-cCCC------------EEEcCcCchHHHHHhhcC
Confidence 456889999975 366677777654 4689999999999999987 4422 12221111 222222257
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+||--.... . + +.++.+.+.|+++|.++.
T Consensus 244 ~D~vid~~g~~-~-~------~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 244 FDLIVVCASSL-T-D------IDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEEEEECCSCS-T-T------CCTTTGGGGEEEEEEEEE
T ss_pred CCEEEECCCCC-c-H------HHHHHHHHHhcCCCEEEE
Confidence 99998533220 0 0 123445678999998864
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.83 Score=45.01 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----------CCCCCCCCCCCCcEEEEEcccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----------LSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----------~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.++|.+||+| |+.++..+.+ .+.+|+++|++++.++.+++... +.... ......++ ..|.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~---~~~~~~~i-~~~~- 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQA---SAKPKLRF-SSST- 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCCCCEEE-ESCG-
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHH---HHHHHhhh-cCCH-
Confidence 3579999998 4455555554 36799999999998887665321 01000 01122333 3443
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+- -+..|+||.-++ ..+ ...+.++.+...++|+-+++.|..+
T Consensus 110 ~~----~~~aDlVIeaVp------e~~~~k~~v~~~l~~~~~~~~ii~snTs~ 152 (463)
T 1zcj_A 110 KE----LSTVDLVVEAVF------EDMNLKKKVFAELSALCKPGAFLCTNTSA 152 (463)
T ss_dssp GG----GTTCSEEEECCC------SCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred HH----HCCCCEEEEcCC------CCHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence 21 246899998553 222 3467888899999999888765543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.16 Score=46.94 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|+| .|.++.++++.. +.+|.+++ +++-.+.++++ +.. .++ .| .+- ..+.+
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l-Ga~------------~v~-~d-~~~---v~~g~ 200 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR-GVR------------HLY-RE-PSQ---VTQKY 200 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH-TEE------------EEE-SS-GGG---CCSCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc-CCC------------EEE-cC-HHH---hCCCc
Confidence 456899999985 377777777765 46999999 99989998873 421 122 35 222 26789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|+ |..... .+..+.+.|+++|.++.-
T Consensus 201 Dvv~-d~~g~~----------~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 201 FAIF-DAVNSQ----------NAAALVPSLKANGHIICI 228 (315)
T ss_dssp EEEE-CC-----------------TTGGGEEEEEEEEEE
T ss_pred cEEE-ECCCch----------hHHHHHHHhcCCCEEEEE
Confidence 9988 332211 124567889999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.42 Score=44.48 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=61.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
.+.++||+.|+ |-|..+..+++.. +.+|.+++.+++-.+.+.+.++.. .++. .|..+.+..
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFD------------GAIDYKNEDLAAGLKRE 214 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCC------------EEEECCCHHHHHHHHHh
Confidence 46688999997 3566666766654 569999999999999885545432 1121 122222211
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+..+ . .+.++.+.+.|+++|.++.
T Consensus 215 ~~~~~d~vi~~~-g----------~~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 215 CPKGIDVFFDNV-G----------GEILDTVLTRIAFKARIVL 246 (336)
T ss_dssp CTTCEEEEEESS-C----------HHHHHHHHTTEEEEEEEEE
T ss_pred cCCCceEEEECC-C----------cchHHHHHHHHhhCCEEEE
Confidence 345799988522 1 1468888899999999874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.082 Score=49.62 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---cccccccccCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~~~ 214 (345)
.+.++||++|+| .|..+..+++.. +.+|++++.+++-.+.+++ ++... ++. .|..+.+....
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-lGa~~------------~~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-LGADL------------VVNPLKEDAAKFMKEKV 228 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-TTCSE------------EECTTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-CCCCE------------EecCCCccHHHHHHHHh
Confidence 456789999985 366666777665 4699999999999999886 44211 111 11111111111
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+||-... ..+.++.+.+.|+++|.++.
T Consensus 229 ~~~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 229 GGVHAAVVTAV----------SKPAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp SSEEEEEESSC----------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCC----------CHHHHHHHHHHhhcCCEEEE
Confidence 47999885321 12467888899999998763
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.28 Score=46.49 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||++|+| .|..+..+++.. +.+|++++.+++-.+.+++.++.. .++..+-.+.+....+.+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGAD------------SFLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCS------------EEEETTCHHHHHHTTTCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCc------------eEEeccCHHHHHHhhCCCC
Confidence 56789999975 356666666665 469999999999888887666532 1121111122332235799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+||--+... . .++.+.+.|+++|.++.
T Consensus 254 ~vid~~g~~----~------~~~~~~~~l~~~G~iv~ 280 (366)
T 1yqd_A 254 GIIDTVSAV----H------PLLPLFGLLKSHGKLIL 280 (366)
T ss_dssp EEEECCSSC----C------CSHHHHHHEEEEEEEEE
T ss_pred EEEECCCcH----H------HHHHHHHHHhcCCEEEE
Confidence 998533211 1 13455678899998763
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.59 Score=42.46 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |+.++..+.+..++.+|.++|.+++..+.+++. +.. . ....|..+. -+..|
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~---------~---~~~~~~~~~----~~~aD 68 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIV---------D---EATADFKVF----AALAD 68 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSC---------S---EEESCTTTT----GGGCS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCc---------c---cccCCHHHh----hcCCC
Confidence 3579999998 566777777654457899999999988876652 211 0 112232222 24689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhc-cCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDR-LMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~-L~pgGvlvvn~~ 258 (345)
+||+-+ |+. ...+.++.+... |+++.++ +++.
T Consensus 69 vVilav------p~~-~~~~v~~~l~~~~l~~~~iv-i~~~ 101 (290)
T 3b1f_A 69 VIILAV------PIK-KTIDFIKILADLDLKEDVII-TDAG 101 (290)
T ss_dssp EEEECS------CHH-HHHHHHHHHHTSCCCTTCEE-ECCC
T ss_pred EEEEcC------CHH-HHHHHHHHHHhcCCCCCCEE-EECC
Confidence 999843 322 236778888888 8876555 4543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.62 E-value=1.5 Score=39.51 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC-ccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-RYA 218 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-~yD 218 (345)
++|.+||+| |+.++..+.+.....+|.++|.+++..+.++++ +.. . . ...|..+.+ + ..|
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~---------~--~-~~~~~~~~~----~~~aD 64 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII---------D--E-GTTSIAKVE----DFSPD 64 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC---------S--E-EESCGGGGG----GTCCS
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CCc---------c--c-ccCCHHHHh----cCCCC
Confidence 468999988 556666666531123899999999988877653 211 0 1 122332222 3 689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++-+ |+. ...+.++.+...++++.+ ++++.+..
T Consensus 65 vVilav------p~~-~~~~v~~~l~~~l~~~~i-v~~~~~~~ 99 (281)
T 2g5c_A 65 FVMLSS------PVR-TFREIAKKLSYILSEDAT-VTDQGSVK 99 (281)
T ss_dssp EEEECS------CHH-HHHHHHHHHHHHSCTTCE-EEECCSCC
T ss_pred EEEEcC------CHH-HHHHHHHHHHhhCCCCcE-EEECCCCc
Confidence 999843 222 445778888888988764 45655433
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.46 Score=38.14 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=46.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
.++|+++|+| |..+++.|.+. +.+|+++|.|++.++.+++. ..+++.+|+.+- ++. .-+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~--------------~~~~~~gd~~~~~~l~~~~~~ 69 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE--------------GFDAVIADPTDESFYRSLDLE 69 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT--------------TCEEEECCTTCHHHHHHSCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC--------------CCcEEECCCCCHHHHHhCCcc
Confidence 3689999987 23344444442 57899999999988877652 246788888653 222 235
Q ss_pred cccEEEEcC
Q 038076 216 RYAGIVVDL 224 (345)
Q Consensus 216 ~yD~Ii~D~ 224 (345)
..|+|++-.
T Consensus 70 ~~d~vi~~~ 78 (141)
T 3llv_A 70 GVSAVLITG 78 (141)
T ss_dssp TCSEEEECC
T ss_pred cCCEEEEec
Confidence 799998743
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.35 Score=46.39 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=58.7
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++++|+++|+| .|..+...++.+ +.+|+++|.+++-.+.+++.++.. +.+...+..+ +...-+..|
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~~-----------~~~~~~~~~~-l~~~l~~aD 233 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCGR-----------IHTRYSSAYE-LEGAVKRAD 233 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTS-----------SEEEECCHHH-HHHHHHHCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCCe-----------eEeccCCHHH-HHHHHcCCC
Confidence 46889999986 333333444444 469999999999988888766522 1121111111 111123689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+.-+..+....+.+.+.+ ..+.++|||++ +|+.
T Consensus 234 vVi~~~~~p~~~t~~li~~~----~l~~mk~g~~i-V~va 268 (377)
T 2vhw_A 234 LVIGAVLVPGAKAPKLVSNS----LVAHMKPGAVL-VDIA 268 (377)
T ss_dssp EEEECCCCTTSCCCCCBCHH----HHTTSCTTCEE-EEGG
T ss_pred EEEECCCcCCCCCcceecHH----HHhcCCCCcEE-EEEe
Confidence 99975433322123344444 44568888876 5776
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.97 Score=42.97 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |+.++..+.+. +.+|+.++.+++.++..++.-..+.........+++++ ..|..+. -+..|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea----~~~aD 101 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKAS----LEGVT 101 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHH----HTTCC
T ss_pred CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHH----HhcCC
Confidence 4689999998 45566666543 46899999999988876653211100000001223332 2333222 24689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+-+ |.. ...+.++.++..|+|+-+++ ++.
T Consensus 102 vVilaV------p~~-~~~~vl~~i~~~l~~~~ivv-s~~ 133 (356)
T 3k96_A 102 DILIVV------PSF-AFHEVITRMKPLIDAKTRIA-WGT 133 (356)
T ss_dssp EEEECC------CHH-HHHHHHHHHGGGCCTTCEEE-ECC
T ss_pred EEEECC------CHH-HHHHHHHHHHHhcCCCCEEE-EEe
Confidence 999843 322 56788899999998876654 443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.1 Score=49.85 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=60.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc------ccccccc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG------DVFSPSE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g------Da~~~l~ 211 (345)
.+..+||++|+| .|..+.++++.....+|++++.+++-.+.++++ +.. .++.. |..+.+.
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GAD------------LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CCc------------EEEeccccCcchHHHHHH
Confidence 345789999965 466777777765436999999999999999863 421 12221 2112222
Q ss_pred c-C-CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 212 D-A-SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 212 ~-~-~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
. . ...+|+||--.-. .+.++.+.+.|+++|.++.
T Consensus 261 ~~~~g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~ 296 (380)
T 1vj0_A 261 DITHGRGADFILEATGD----------SRALLEGSELLRRGGFYSV 296 (380)
T ss_dssp HHTTTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEE
Confidence 1 2 3479999843211 1357778889999999864
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.69 Score=43.01 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE-----Eccccccccc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH-----IGDVFSPSED 212 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~-----~gDa~~~l~~ 212 (345)
...+|++||+| |+.++..|.+. +.+|+.+ .+++.++..++. ++.. ..+..... ..|. +
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~-g~~~------~~~~~~~~~~~~~~~~~----~- 82 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEAT-GLRL------ETQSFDEQVKVSASSDP----S- 82 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHH-CEEE------ECSSCEEEECCEEESCG----G-
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhC-CeEE------EcCCCcEEEeeeeeCCH----H-
Confidence 35789999998 55666666653 5689999 999888776653 1110 01111111 1222 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.-+.+|+||+-+ +.. ...+.++.++..++|+.+++..
T Consensus 83 ~~~~~D~vilav------k~~-~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 83 AVQGADLVLFCV------KST-DTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp GGTTCSEEEECC------CGG-GHHHHHHHHTTTSCTTCEEEEE
T ss_pred HcCCCCEEEEEc------ccc-cHHHHHHHHHHhcCCCCEEEEe
Confidence 125799999843 222 4578899999999988766543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.54 Score=44.84 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+..+|.+||+| |..++..+.+. +.+|+++|.+++-++...+. +.. ...|..+.++. .++.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-g~~--------------~~~s~~e~~~~-a~~~ 82 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-GIA--------------GARSIEEFCAK-LVKP 82 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-TCB--------------CCSSHHHHHHH-SCSS
T ss_pred cCCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-CCE--------------EeCCHHHHHhc-CCCC
Confidence 45689999998 55667666653 57899999999988766543 111 11233333322 2456
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+||+-+ |.. ...+.++.+...|++|-+ ++++.+...
T Consensus 83 DvVi~~v------p~~-~v~~vl~~l~~~l~~g~i-iId~st~~~ 119 (358)
T 4e21_A 83 RVVWLMV------PAA-VVDSMLQRMTPLLAANDI-VIDGGNSHY 119 (358)
T ss_dssp CEEEECS------CGG-GHHHHHHHHGGGCCTTCE-EEECSSCCH
T ss_pred CEEEEeC------CHH-HHHHHHHHHHhhCCCCCE-EEeCCCCCh
Confidence 9999844 333 567788888888887655 457665553
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.062 Score=50.50 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=59.6
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-CC
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-AS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-~~ 214 (345)
+..+||++|+|+ |..+..+++.....+|++++.+++-.+.++++ . .. ++. .|..+.+.. ..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-~~------------v~~~~~~~~~~~~~~~~~ 229 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-DR------------LVNPLEEDLLEVVRRVTG 229 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-SE------------EECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-Hh------------ccCcCccCHHHHHHHhcC
Confidence 678999999853 66677777765433899999999988887764 2 11 111 121111211 24
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+||--. . ..+.++.+.+.|+++|.++.
T Consensus 230 ~g~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 230 SGVEVLLEFS-G---------NEAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp SCEEEEEECS-C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C---------CHHHHHHHHHHHhcCCEEEE
Confidence 5799998422 1 13567888899999998764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.2 Score=48.46 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE--EEccc----------
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV--HIGDV---------- 206 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v--~~gDa---------- 206 (345)
++.+|++||+| .|..+..+++.. +.+|+++|.+++..+.+++. +.... +-.+.- ..+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l-Ga~~~------~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV-GAQWL------DLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT-TCEEC------CCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEE------eccccccccccchhhhhHHHHhh
Confidence 67899999998 444444444443 46999999999998888773 32100 000000 00000
Q ss_pred -ccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 207 -FSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 207 -~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
..-+...-+..|+||.-+..+....+.+.+.+.+ +.++||+++ +++....
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv----~~MkpGsVI-VDvA~d~ 305 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAA----TGMQPGSVV-VDLAGET 305 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHH----HTSCTTCEE-EETTGGG
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHH----hcCCCCcEE-EEEeCCC
Confidence 0011122378999997654433333456776555 456776654 5776433
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.11 Score=48.29 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=53.6
Q ss_pred CcccEEEEcCCCCCCCCCCcch----HH-----HHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHH
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEE----VA-----TWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSA 285 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t----~e-----f~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~ 285 (345)
++||+|++|.-.+.. .+-|. ++ ....+.++|+|||.+++-++.... +....+
T Consensus 205 ~k~DvV~SDMApn~s--Gh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD-----------------r~se~l 265 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYK--YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD-----------------RASESI 265 (320)
T ss_dssp CCEEEEEEECCCCCC--SCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS-----------------HHHHHH
T ss_pred CcCCEEEEcCCCCCC--CccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCc-----------------ccHHHH
Confidence 779999999755322 11111 11 455678899999999999997764 356889
Q ss_pred HHHHHHHCCCCEEEEEec-C-CCCceEEEEeC
Q 038076 286 IRALSEAFPGKVSWKRMP-E-RNGENFLALTG 315 (345)
Q Consensus 286 ~~~l~~~F~~~v~~~~~~-~-~~~~n~v~~a~ 315 (345)
+..|++.|. .|...+=+ . ...+.++++.+
T Consensus 266 v~~LaR~F~-~Vr~vKP~ASR~StEvf~La~g 296 (320)
T 2hwk_A 266 IGAIARQFK-FSRVCKPKSSLEETEVLFVFIG 296 (320)
T ss_dssp HHHHHTTEE-EEEEECCTTCCSTTCEEEEEEE
T ss_pred HHHHHHhcc-eeeeeCCCCccccceEEEEEEe
Confidence 999999999 66643311 1 23345555554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.5 Score=43.12 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=63.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc------------CCCCCCCCCCCCCcEEEEEccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF------------GLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f------------~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.++|.+||+| |..++..+.+. +.+|+++|.+++.++.+++.. ++..... .....+++. ..|.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~~i~~-~~~~ 79 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAA-QKALGGIRY-SDDL 79 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHH-HHHHHHCEE-ESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHH-HHHHcCeEE-eCCH
Confidence 3689999988 44555555543 679999999999988877652 1111000 000012222 2232
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.+. -+..|+||.-+ |+.+ ...+.++.+...++|+.+++.|..+.
T Consensus 80 ~~~----~~~aDlVi~av------~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~ 124 (283)
T 4e12_A 80 AQA----VKDADLVIEAV------PESLDLKRDIYTKLGELAPAKTIFATNSSTL 124 (283)
T ss_dssp HHH----TTTCSEEEECC------CSCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred HHH----hccCCEEEEec------cCcHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 221 25689999744 3322 45678889999999988887665543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.92 E-value=1.2 Score=44.08 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC------CCCCcEEEEEcccccccccC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT------ATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~------~~~~rv~v~~gDa~~~l~~~ 213 (345)
.+|.+||+| |+.++..+.+..++.+|+++|+|++.++..++.- .+-.+... ....++++ ..|..+-
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~-~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~---- 83 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDK-LPIYEPGLDEIVFAARGRNLFF-SSDIPKA---- 83 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEE-ESCHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhhcCCEEE-ECCHHHH----
Confidence 589999999 5667777777655679999999999988765421 11000000 00012221 1222111
Q ss_pred CCcccEEEEcCCCCCCC-------CCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 214 SGRYAGIVVDLFSEGKV-------LPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~-------p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-+..|+||+-+.++... .+.+ +..+.++.+.+.|+++-++ ++..+...
T Consensus 84 ~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~~ 139 (481)
T 2o3j_A 84 IAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIV-VEKSTVPV 139 (481)
T ss_dssp HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEE-EECSCCCT
T ss_pred hhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEE-EECCCCCC
Confidence 13579999976554210 0111 3466778888889886554 56544443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.24 Score=48.24 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc---ccc------
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV---FSP------ 209 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa---~~~------ 209 (345)
++.+|++||+| .|..+..+++.. +.+|+++|+++...+.+++. +..... - .+. ...|+ ..|
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~-G~~~~~-----~-~~~-~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL-GAKFIA-----V-EDE-EFKAAETAGGYAKEMSG 259 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT-TCEECC-----C-CC------------------C
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-CCceee-----c-ccc-cccccccccchhhhcch
Confidence 57899999998 455554555554 57999999999999888873 421100 0 000 00010 001
Q ss_pred ---------cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 210 ---------SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 210 ---------l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+.+.-+..|+||.-+..++...+.+.+.+.+ +.++||.++ +++..
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv----~~Mk~GsVI-VDvA~ 313 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREML----DSMKPGSVV-VDLAV 313 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHH----TTSCTTCEE-EETTG
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHH----hcCCCCCEE-EEEeC
Confidence 1111257899997665554444567776544 567777665 56654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.19 Score=46.85 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|.+++.+++-.+.++++ +.. .++. .|..+.+..
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~------------~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY-GAE------------YLINASKEDILRQVLKF 212 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCc------------EEEeCCCchHHHHHHHH
Confidence 45678999994 4566676777664 57999999999999998874 321 1222 122222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+-.+-. +.++.+.+.|+++|.++.
T Consensus 213 ~~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 213 TNGKGVDASFDSVGK-----------DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp TTTSCEEEEEECCGG-----------GGHHHHHHHEEEEEEEEE
T ss_pred hCCCCceEEEECCCh-----------HHHHHHHHHhccCCEEEE
Confidence 24579998853211 357778889999999875
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.77 Score=42.73 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++.++.. ..+-.. |..+.+..
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~-----------~~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFD-----------DAFNYKEESDLTAALKRC 221 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCS-----------EEEETTSCSCSHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCc-----------eEEecCCHHHHHHHHHHH
Confidence 45678999996 4566666666654 469999999999999888555521 111111 22222221
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.++.+|+|+... . .+.++.+.+.|+++|.+++
T Consensus 222 ~~~~~d~vi~~~-g----------~~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 222 FPNGIDIYFENV-G----------GKMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp CTTCEEEEEESS-C----------HHHHHHHHTTEEEEEEEEE
T ss_pred hCCCCcEEEECC-C----------HHHHHHHHHHHhcCCEEEE
Confidence 235799998532 1 1467888899999999874
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.36 E-value=1.3 Score=41.77 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=80.5
Q ss_pred CCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCccc
Q 038076 142 GPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD 218 (345)
-+++++-+|.|.+...+.+.- +...+.++|+|+...+.-+.+|+. ..++.+|..+.... ....+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------------~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------------TNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------------SCEECCCGGGCCHHHHHHTTCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------------CceeccccccCCHHHhccCCCC
Confidence 479999999999998887652 225688999999999999998852 23667898886432 123699
Q ss_pred EEEEcCCCCCC--------C--CCCcchHHHHHHHHhccC-CCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHH
Q 038076 219 GIVVDLFSEGK--------V--LPQLEEVATWLKLKDRLM-PNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIR 287 (345)
Q Consensus 219 ~Ii~D~f~~~~--------~--p~~l~t~ef~~~~~~~L~-pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~ 287 (345)
+|+...+..+. . +..-.-.++++ +.+.++ |.=+++=|+.+-... ...+.+++
T Consensus 72 ~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r-~i~~~~~P~~~vlENV~gl~~~----------------~~~~~i~~ 134 (333)
T 4h0n_A 72 TILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIG-ILDQLDNVDYILMENVKGFENS----------------TVRNLFID 134 (333)
T ss_dssp EEEECCCCCCSEETTEECCTTCTTSCCHHHHHH-HGGGCTTCCEEEEEECTTGGGS----------------HHHHHHHH
T ss_pred EEEecCCCcchhhhhhccCCcCcccccHHHHHH-HHHHhcCCCEEEEecchhhhhh----------------hHHHHHHH
Confidence 99976544321 1 11111234444 444565 998888898865431 34566777
Q ss_pred HHHHH
Q 038076 288 ALSEA 292 (345)
Q Consensus 288 ~l~~~ 292 (345)
.|.+.
T Consensus 135 ~l~~~ 139 (333)
T 4h0n_A 135 KLKEC 139 (333)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.42 Score=44.43 Aligned_cols=93 Identities=9% Similarity=0.081 Sum_probs=58.1
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++ ++.. ..+-. .|..+.+..
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~-~g~~-----------~~~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ-IGFD-----------AAFNYKTVNSLEEALKKA 210 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCS-----------EEEETTSCSCHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-cCCc-----------EEEecCCHHHHHHHHHHH
Confidence 45678999997 4455555555544 5699999999999988855 3321 11111 121122221
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+++..+- .+.++.+.+.|+++|.+++
T Consensus 211 ~~~~~d~vi~~~g-----------~~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 211 SPDGYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp CTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEE
T ss_pred hCCCCeEEEECCC-----------hHHHHHHHHHHhcCCEEEE
Confidence 2357999985331 1347788899999998864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.26 Score=47.34 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
++.+|+++|+| .|..+..+++.++ .+|+++|.++...+.+++ ++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~~~d~~~~~~~~~~~-~G 215 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVES-LG 215 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHH-TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH-cC
Confidence 57899999987 4554555555554 689999999988887776 44
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=1.7 Score=43.07 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC---C----CCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT---A----TGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~---~----~~~rv~v~~gDa~~~l~ 211 (345)
..+|.+||+| |..++..+.+. +.+|+++|+|++.++..++.- .+-.+... . ...++++ ..|..+-
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a-- 81 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGG-VPIHEPGLKEVIARNRSAGRLRF-STDIEAA-- 81 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEE-ECCHHHH--
T ss_pred CceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhcccCCEEE-ECCHHHH--
Confidence 4689999999 55666666653 568999999999998877642 11100000 0 0112322 1222111
Q ss_pred cCCCcccEEEEcCCCCC---CCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 212 DASGRYAGIVVDLFSEG---KVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~---~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
-+..|+||+-+..+. ..|.--+..+.++.+...|+++-++ ++..+.
T Consensus 82 --~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iV-V~~STv 130 (478)
T 2y0c_A 82 --VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVI-VDKSTV 130 (478)
T ss_dssp --HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEE-EECSCC
T ss_pred --hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEE-EEeCCc
Confidence 135899999775532 1222235667788888889886555 666543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.13 Score=48.40 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCCCEEEEeecc--cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---ccc-
Q 038076 139 VPNGPIAIYGLGG--GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~--G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~- 212 (345)
.+.++||+.|+|+ |..+..+++...+.+|.+++.+++-.+.+++. +.. .++...-.++ +..
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD------------YVINASMQDPLAEIRRI 235 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC------------EEecCCCccHHHHHHHH
Confidence 4567899999873 44555555554357999999999999988764 321 1111111111 221
Q ss_pred CC-CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 AS-GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~-~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.. +.+|+||..+-. .+.++.+.+.|+++|.++.
T Consensus 236 ~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp TTTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEE
T ss_pred hcCCCceEEEECCCC----------HHHHHHHHHHHhcCCEEEE
Confidence 22 489999853211 2467778899999998864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.22 Score=46.35 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.. |..+.+.+
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-Ga~------------~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL-GAW------------ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCC------------EEEeCCCccHHHHHHHH
Confidence 45678999993 4566666777654 56999999999999999874 321 11211 22222211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+-.+ .. +.++.+.+.|+++|.++.
T Consensus 205 ~~~~g~Dvvid~~-g~----------~~~~~~~~~l~~~G~iv~ 237 (325)
T 3jyn_A 205 TDGKKCPVVYDGV-GQ----------DTWLTSLDSVAPRGLVVS 237 (325)
T ss_dssp TTTCCEEEEEESS-CG----------GGHHHHHTTEEEEEEEEE
T ss_pred hCCCCceEEEECC-Ch----------HHHHHHHHHhcCCCEEEE
Confidence 235799988532 11 356778899999999875
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.95 Score=44.98 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCC-----CCCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPT-----ATGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~-----~~~~rv~v~~gDa~~ 208 (345)
.++|.+||+| |+.++..+.+. +.+|+++|++++.++.+++... +....... ..-.+++.. .|. +
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 80 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-H 80 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-H
Confidence 3689999998 56667666653 5789999999999988766420 11000000 000134332 232 1
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
- -+.-|+||.-++ +.+ ...+.++++.+.++|+.+++.|..+.+
T Consensus 81 ~----~~~aDlVIeAVp------e~~~vk~~v~~~l~~~~~~~~IlasntSti~ 124 (483)
T 3mog_A 81 A----LAAADLVIEAAS------ERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124 (483)
T ss_dssp G----GGGCSEEEECCC------CCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred H----hcCCCEEEEcCC------CcHHHHHHHHHHHHHhhccCcEEEecCCCCC
Confidence 1 246799997543 332 346789999999999999988877654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=90.77 E-value=1.8 Score=40.73 Aligned_cols=131 Identities=11% Similarity=-0.040 Sum_probs=81.2
Q ss_pred CCCEEEEeecccHHHHHHHHhC-CCCEE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW-PSLKL-EGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~-p~~~v-~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+-+++++-||.|.+...+.+.- +...+ .++|+|+...+..+.+|+. . ++.+|.++.... ....
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~----------~---~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE----------E---VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC----------C---CBCCCTTTCCHHHHHHTC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC----------C---cccCChhhcCHHHhccCC
Confidence 4589999999999998887641 12456 7999999999999998851 1 556788776432 1236
Q ss_pred ccEEEEcCCCCCC------CC---CCcch---HHHHHHHHhcc--CCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 217 YAGIVVDLFSEGK------VL---PQLEE---VATWLKLKDRL--MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 217 yD~Ii~D~f~~~~------~p---~~l~t---~ef~~~~~~~L--~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
+|+|+...+..+. .- ..--. .++++.+.+.+ +|.=+++=|+.+-... ..+
T Consensus 77 ~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~----------------~~~ 140 (327)
T 3qv2_A 77 CNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKES----------------LVF 140 (327)
T ss_dssp CCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGS----------------HHH
T ss_pred CCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcCh----------------HHH
Confidence 8999975543221 00 00011 12222133456 7888888898765431 356
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 038076 283 NSAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~~~~ 301 (345)
+.+++.|.+. .-.+.+..
T Consensus 141 ~~i~~~l~~~-GY~v~~~v 158 (327)
T 3qv2_A 141 KEIYNILIKN-QYYIKDII 158 (327)
T ss_dssp HHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHhC-CCEEEEEE
Confidence 6777777654 32344443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.74 E-value=0.93 Score=40.81 Aligned_cols=89 Identities=20% Similarity=0.118 Sum_probs=57.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.++..+.+. +.+|+++|.+++-.+.++++ +.. . + ...|. ... +..|+|
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-g~~---------~--~-~~~~~----~~~-~~~D~v 61 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER-QLV---------D--E-AGQDL----SLL-QTAKII 61 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-TSC---------S--E-EESCG----GGG-TTCSEE
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhC-CCC---------c--c-ccCCH----HHh-CCCCEE
Confidence 68899988 45566666653 45899999999988876653 221 1 1 12232 223 578999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++-+ |+. ...+.++.+...++++.++ +++.+
T Consensus 62 i~av------~~~-~~~~~~~~l~~~~~~~~~v-v~~~~ 92 (279)
T 2f1k_A 62 FLCT------PIQ-LILPTLEKLIPHLSPTAIV-TDVAS 92 (279)
T ss_dssp EECS------CHH-HHHHHHHHHGGGSCTTCEE-EECCS
T ss_pred EEEC------CHH-HHHHHHHHHHhhCCCCCEE-EECCC
Confidence 9844 222 4567888888888887655 67643
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.66 E-value=1.9 Score=42.38 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=64.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCC--------CCcEEEEEcccccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTAT--------GGVLQVHIGDVFSPSE 211 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~--------~~rv~v~~gDa~~~l~ 211 (345)
.+|.+||+| |..++..+.+. +.+|+++|+|++.++..++.. ......... ..++++ ..|..+.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~--~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~- 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGT--IPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV- 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTC--SCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG-
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCC--CcccCCCHHHHHHhhcccCcEEE-ECCHHHHH-
Confidence 479999998 55666666653 579999999999988776622 110000000 123332 23332222
Q ss_pred cCCCcccEEEEcCCCCCC---CCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 212 DASGRYAGIVVDLFSEGK---VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~---~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+..|+||+-+..+.. -+.--+-.+.++.+.+.|+++- ++++..+...
T Consensus 77 ---~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~-iVV~~STv~p 126 (450)
T 3gg2_A 77 ---PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYI-LIVTKSTVPV 126 (450)
T ss_dssp ---GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCE-EEEECSCCCT
T ss_pred ---hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCC-EEEEeeeCCC
Confidence 457999987655421 1111244567788888887754 4556655443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.34 Score=47.02 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY 183 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 183 (345)
++.+|+++|+| .|..+..+++.++ .+|+++|.++...+.+++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~l 214 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM 214 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc
Confidence 47899999987 4544555555554 6999999999988887653
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.79 Score=42.68 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC--CCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS--DLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+|.+||+| |+.++..+.+. +.+|++++.+++.++..++..+.. ... . ....++.....|..+. -+.+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~----~~~~ 76 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPG-L-AGTAHPDLLTSDIGLA----VKDA 76 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSS-C-CEEECCSEEESCHHHH----HTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEeccc-c-ccccccceecCCHHHH----HhcC
Confidence 589999998 34555555542 468999999998887766543211 000 0 0000010112222221 2468
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+|++-+.. . ...+.++.+...|+++.++ +++
T Consensus 77 D~vi~~v~~------~-~~~~~~~~l~~~l~~~~~v-v~~ 108 (359)
T 1bg6_A 77 DVILIVVPA------I-HHASIAANIASYISEGQLI-ILN 108 (359)
T ss_dssp SEEEECSCG------G-GHHHHHHHHGGGCCTTCEE-EES
T ss_pred CEEEEeCCc------h-HHHHHHHHHHHhCCCCCEE-EEc
Confidence 999985432 1 2467888898889887654 444
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.44 E-value=1 Score=41.39 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |..++..+.+. +.+|+++|.+++-++...+. +. .....|..+. -+..|
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-g~-------------~~~~~~~~e~----~~~aD 66 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE-GA-------------CGAAASAREF----AGVVD 66 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-TC-------------SEEESSSTTT----TTTCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc-CC-------------ccccCCHHHH----HhcCC
Confidence 4579999998 55666666653 57899999999988876653 11 1112333332 24579
Q ss_pred EEEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+-+.+. ....+.+ +.+...|+++.++ +++.+...
T Consensus 67 vvi~~vp~~------~~~~~v~~~~~~l~~~l~~g~iv-v~~st~~~ 106 (303)
T 3g0o_A 67 ALVILVVNA------AQVRQVLFGEDGVAHLMKPGSAV-MVSSTISS 106 (303)
T ss_dssp EEEECCSSH------HHHHHHHC--CCCGGGSCTTCEE-EECSCCCH
T ss_pred EEEEECCCH------HHHHHHHhChhhHHhhCCCCCEE-EecCCCCH
Confidence 999854331 1223333 4455667776554 67765443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.82 Score=43.52 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++++|+++|+| .|..+...++.. +.+|+++|.+++-.+.+++.++. .+.....+..+ +...-+..|
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~-----------~~~~~~~~~~~-l~~~~~~~D 231 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGG-----------RVITLTATEAN-IKKSVQHAD 231 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-----------SEEEEECCHHH-HHHHHHHCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCc-----------eEEEecCCHHH-HHHHHhCCC
Confidence 46899999985 233333333343 46999999999988877765541 12222222111 111124689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|+.-+.......+.+.+.+ +.+.++++|++ +|+...
T Consensus 232 vVi~~~g~~~~~~~~li~~~----~l~~mk~gg~i-V~v~~~ 268 (369)
T 2eez_A 232 LLIGAVLVPGAKAPKLVTRD----MLSLMKEGAVI-VDVAVD 268 (369)
T ss_dssp EEEECCC-------CCSCHH----HHTTSCTTCEE-EECC--
T ss_pred EEEECCCCCccccchhHHHH----HHHhhcCCCEE-EEEecC
Confidence 99875543221112333443 44667888875 566543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.20 E-value=1 Score=41.74 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++|.+||+| |+.++..++ . +.+|+++|.+++.++.+.+.+ .+ ..-.+++.. .|... -+.-|
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~l--~~-----~~~~~i~~~-~~~~~-----~~~aD 75 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQI--PE-----ELLSKIEFT-TTLEK-----VKDCD 75 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHS--CG-----GGGGGEEEE-SSCTT-----GGGCS
T ss_pred CCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHHH--HH-----HHhCCeEEe-CCHHH-----HcCCC
Confidence 5789999999 667777766 3 679999999999999888873 11 001244432 33322 24679
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||.-++... -...++|..+... |+.+++.|..+..
T Consensus 76 lVieavpe~~-----~vk~~l~~~l~~~--~~~IlasntSti~ 111 (293)
T 1zej_A 76 IVMEAVFEDL-----NTKVEVLREVERL--TNAPLCSNTSVIS 111 (293)
T ss_dssp EEEECCCSCH-----HHHHHHHHHHHTT--CCSCEEECCSSSC
T ss_pred EEEEcCcCCH-----HHHHHHHHHHhcC--CCCEEEEECCCcC
Confidence 9997543321 1245677776555 8888888887654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=1.2 Score=40.93 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc----------CCCCCC-----CCCCCCCcEEEEE
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF----------GLSDLE-----KPTATGGVLQVHI 203 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f----------~~~~~~-----~~~~~~~rv~v~~ 203 (345)
.++|.+||+| |..++..+.+. +.+|+++|.+++.++.+++.. +.-... .......++++.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~- 91 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS- 91 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-
Confidence 3679999998 34566666653 579999999999888764422 100000 000000133332
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 204 GDVFSPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 204 gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.|..+ .-+..|+||.-+ |..+ ...++++.+...++|+.+++.|..+.
T Consensus 92 ~~~~~----~~~~aD~Vi~av------p~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i 139 (302)
T 1f0y_A 92 TDAAS----VVHSTDLVVEAI------VENLKVKNELFKRLDKFAAEHTIFASNTSSL 139 (302)
T ss_dssp SCHHH----HTTSCSEEEECC------CSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred cCHHH----hhcCCCEEEEcC------cCcHHHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 23221 124689999854 3322 24578888888898888776565543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.2 Score=46.84 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||++|+| .|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.. |..+.+..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-ga~------------~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL-GAA------------YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC-CCc------------EEEeCCcccHHHHHHHH
Confidence 456889999986 456666666654 56999999999999998884 321 12211 22221211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+|+-.+-. +......+.|+++|.++.
T Consensus 209 ~~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~ 241 (340)
T 3gms_A 209 TNGIGADAAIDSIGG-----------PDGNELAFSLRPNGHFLT 241 (340)
T ss_dssp TTTSCEEEEEESSCH-----------HHHHHHHHTEEEEEEEEE
T ss_pred hCCCCCcEEEECCCC-----------hhHHHHHHHhcCCCEEEE
Confidence 23579998852211 122334478999999874
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.87 E-value=1.5 Score=39.15 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+||+| |..++..+.+. +.+ |.++|.+++-.+...+.++. ++ ..|..+. -+..|
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~~g~-------------~~-~~~~~~~----~~~~D 70 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQKVEA-------------EY-TTDLAEV----NPYAK 70 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHHTTC-------------EE-ESCGGGS----CSCCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCC-------------ce-eCCHHHH----hcCCC
Confidence 589999998 44566666654 344 89999999988776665431 11 2333332 24689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++-+ |+. ...+.++.+...++++-++ +++.+.
T Consensus 71 vvi~av------~~~-~~~~v~~~l~~~~~~~~iv-v~~s~~ 104 (266)
T 3d1l_A 71 LYIVSL------KDS-AFAELLQGIVEGKREEALM-VHTAGS 104 (266)
T ss_dssp EEEECC------CHH-HHHHHHHHHHTTCCTTCEE-EECCTT
T ss_pred EEEEec------CHH-HHHHHHHHHHhhcCCCcEE-EECCCC
Confidence 999843 222 2367788888778776555 455443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=0.36 Score=45.70 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCCCCEEEEe--ecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYG--LGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG--~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||++| +|.|..+..+++.. +.+|.+++.+++-.+.+++ ++.. .++.. |..+.+..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~-~Ga~------------~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS-LGCD------------RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-cCCc------------EEEecCChhHHHHHHHh
Confidence 4567899999 45677777777765 5699999999999999887 3421 11211 21122221
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+||--. . .+.++.+.+.|+++|.++.
T Consensus 228 ~~~g~D~vid~~-g----------~~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 228 YPEGVDVVYESV-G----------GAMFDLAVDALATKGRLIV 259 (362)
T ss_dssp CTTCEEEEEECS-C----------THHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCEEEECC-C----------HHHHHHHHHHHhcCCEEEE
Confidence 345799998432 1 1467888899999998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.73 E-value=0.58 Score=43.70 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|++++.+++-.+.++++ +.. .++.- |..+.+.+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-ga~------------~~~d~~~~~~~~~~~~~ 230 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL-GAD------------ETVNYTHPDWPKEVRRL 230 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS------------EEEETTSTTHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCC------------EEEcCCcccHHHHHHHH
Confidence 35678999997 4566666777665 46999999999999998763 321 11211 11111221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+||..+- . +.++.+.+.|+++|.++.
T Consensus 231 ~~~~~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 231 TGGKGADKVVDHTG-A----------LYFEGVIKATANGGRIAI 263 (343)
T ss_dssp TTTTCEEEEEESSC-S----------SSHHHHHHHEEEEEEEEE
T ss_pred hCCCCceEEEECCC-H----------HHHHHHHHhhccCCEEEE
Confidence 2357999985432 1 136777889999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.4 Score=44.91 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--cccccccc--
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--DVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--Da~~~l~~-- 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.. |..+.+..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~------------~v~~~~~~~~~~v~~~~ 223 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV-GAD------------IVLPLEEGWAKAVREAT 223 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-TCS------------EEEESSTTHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCc------------EEecCchhHHHHHHHHh
Confidence 45678999996 4567777777765 56999999999999998884 321 12222 22222221
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+-.+-. +.++.+.+.|+++|.++.
T Consensus 224 ~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~ 255 (342)
T 4eye_A 224 GGAGVDMVVDPIGG-----------PAFDDAVRTLASEGRLLV 255 (342)
T ss_dssp TTSCEEEEEESCC-------------CHHHHHHTEEEEEEEEE
T ss_pred CCCCceEEEECCch-----------hHHHHHHHhhcCCCEEEE
Confidence 23479999853211 136778889999999874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.67 E-value=2.2 Score=38.58 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCC---
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDAS--- 214 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~--- 214 (345)
.+|.+||+| |+.++..+.+. +.+|++++.+++.++..++. +.... ..+.. ..... ... .+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~-g~~~~-----~~~~~--~~~~~-~~~~~~~~~~~~ 72 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKN-GLIAD-----FNGEE--VVANL-PIFSPEEIDHQN 72 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH-CEEEE-----ETTEE--EEECC-CEECGGGCCTTS
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhC-CEEEE-----eCCCe--eEecc-eeecchhhcccC
Confidence 479999998 45566666553 46899999999888766654 21100 00000 00000 000 1112
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+||+-+. +. ...+.++.+...|+++.+++.
T Consensus 73 ~~~d~vi~~v~------~~-~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 73 EQVDLIIALTK------AQ-QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CCCSEEEECSC------HH-HHHHHHHHHGGGCCTTCEEEE
T ss_pred CCCCEEEEEec------cc-cHHHHHHHHHHhcCCCCEEEE
Confidence 27999998442 21 357788889888988766553
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.39 Score=45.02 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=60.6
Q ss_pred CCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 140 PNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 140 ~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
+..+||++|+ |.|..+.++++.. +.+|++++.+++-.+.+++. +... ++. .|..+-+.. ..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~~------------vi~~~~~~~~~~~~~~~ 215 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM-GADI------------VLNHKESLLNQFKTQGI 215 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH-TCSE------------EECTTSCHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCcE------------EEECCccHHHHHHHhCC
Confidence 5678999953 3466677777765 46999999999999999884 4221 111 121111211 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+--. -..+.++.+.+.|+++|.++.
T Consensus 216 ~g~Dvv~d~~----------g~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 216 ELVDYVFCTF----------NTDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp CCEEEEEESS----------CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccEEEECC----------CchHHHHHHHHHhccCCEEEE
Confidence 6799888421 124578889999999999864
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.37 Score=45.73 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++|.+||+| |+++++.+.+. +.+|.++|.+++..+.+++. +. . ...|..+.++...+..|
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-G~-------------~-~~~~~~e~~~~a~~~aD 70 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-GF-------------D-VSADLEATLQRAAAEDA 70 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-TC-------------C-EESCHHHHHHHHHHTTC
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-CC-------------e-eeCCHHHHHHhcccCCC
Confidence 4689999999 77888888764 57899999999998887663 21 1 12333333322123469
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+-+ |.. ...+.++.+... +|+ .+++++.+..
T Consensus 71 lVilav------P~~-~~~~vl~~l~~~-~~~-~iv~Dv~Svk 104 (341)
T 3ktd_A 71 LIVLAV------PMT-AIDSLLDAVHTH-APN-NGFTDVVSVK 104 (341)
T ss_dssp EEEECS------CHH-HHHHHHHHHHHH-CTT-CCEEECCSCS
T ss_pred EEEEeC------CHH-HHHHHHHHHHcc-CCC-CEEEEcCCCC
Confidence 999843 322 456777777764 655 6677776544
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.29 Score=46.32 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCH---HHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccccCCC
Q 038076 141 NGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDE---ILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSEDASG 215 (345)
Q Consensus 141 p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp---~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~~~~ 215 (345)
.++||++|+| .|..+..+++.. +.+|++++.++ +-.+.++++ +.. .+ .. |..+.+.+...
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~-ga~----------~v---~~~~~~~~~~~~~~ 245 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEET-KTN----------YY---NSSNGYDKLKDSVG 245 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHH-TCE----------EE---ECTTCSHHHHHHHC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHh-CCc----------ee---chHHHHHHHHHhCC
Confidence 6789999984 255555666554 46999999998 777888764 321 11 11 11111211125
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHH-HHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATW-LKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~-~~~~~~L~pgGvlvv 255 (345)
.+|+||.-+... ..+ +.+.+.|+++|.++.
T Consensus 246 ~~d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~ 276 (366)
T 2cdc_A 246 KFDVIIDATGAD----------VNILGNVIPLLGRNGVLGL 276 (366)
T ss_dssp CEEEEEECCCCC----------THHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEECCCCh----------HHHHHHHHHHHhcCCEEEE
Confidence 799998533211 145 788899999998763
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.71 Score=42.87 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-cCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY-FGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~-f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|++||+| |+.++..|.+. +.+|+.++.++ . +..++. +.... ...+..++..-.+..-.+...+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~-~-~~i~~~Gl~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD-Y-ETVKAKGIRIRS-----ATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT-H-HHHHHHCEEEEE-----TTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh-H-HHHHhCCcEEee-----cCCCcEEEeeeeeECCHHHcCCCCC
Confidence 579999998 56666666653 56899999988 3 444432 11110 0012233210001111112235799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+||+-+... ...+.++.++..++++.+++.-
T Consensus 74 lVilavK~~-------~~~~~l~~l~~~l~~~t~Iv~~ 104 (320)
T 3i83_A 74 CTLLCIKVV-------EGADRVGLLRDAVAPDTGIVLI 104 (320)
T ss_dssp EEEECCCCC-------TTCCHHHHHTTSCCTTCEEEEE
T ss_pred EEEEecCCC-------ChHHHHHHHHhhcCCCCEEEEe
Confidence 999854332 2235788899999998776543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=89.20 E-value=3.6 Score=40.87 Aligned_cols=126 Identities=7% Similarity=-0.108 Sum_probs=83.1
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--------- 212 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--------- 212 (345)
-++++|=||.|.+...+.+. ....|.++|+|+..++.-+.+|+. .|...++.+|.+++...
T Consensus 89 ~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~---------~p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC---------DPATHHFNEDIRDITLSHQEGVSDEA 158 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC---------CTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred ceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc---------CCCcceeccchhhhhhccccccchhh
Confidence 57999999999999888753 234589999999999998888852 24456788999887521
Q ss_pred -------CCCcccEEEEcCCCCCC-CCC------------------CcchHHHHHHHHhccCCCcEEEEEecCCCCCCcc
Q 038076 213 -------ASGRYAGIVVDLFSEGK-VLP------------------QLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDM 266 (345)
Q Consensus 213 -------~~~~yD~Ii~D~f~~~~-~p~------------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~ 266 (345)
....+|+|+...+..+. ... .-.-.++++ +.+.++|.=+++=|+.+-...
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~r-iI~~~rPk~fvlENV~gl~s~--- 234 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVR-IIDARRPAMFVLENVKNLKSH--- 234 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHH-HHHHHCCSEEEEEEETTTTTG---
T ss_pred HHhhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHH-HHHHcCCcEEEEeCcHHHhcc---
Confidence 12468999876544321 000 001123333 344679998888899876541
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHH
Q 038076 267 TYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 267 ~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
++...++.+++.|.+
T Consensus 235 ----------~~g~~f~~i~~~L~~ 249 (482)
T 3me5_A 235 ----------DKGKTFRIIMQTLDE 249 (482)
T ss_dssp ----------GGGHHHHHHHHHHHH
T ss_pred ----------cCCcHHHHHHHHHhc
Confidence 112467777777765
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=89.04 E-value=3.6 Score=37.90 Aligned_cols=108 Identities=10% Similarity=0.133 Sum_probs=67.3
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCC-EEEEEECC--HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSL-KLEGWEID--EILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~-~v~~VEid--p~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..+|.+||+| |..++..+.+. +. +|+++|.+ ++..+.+++. + ++. ..|..+.+ +
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-g-------------~~~-~~~~~e~~----~ 82 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-G-------------VSC-KASVAEVA----G 82 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-T-------------CEE-CSCHHHHH----H
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-C-------------CEE-eCCHHHHH----h
Confidence 4689999998 55677777764 34 89999997 5777766552 1 111 12222222 3
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
..|+||+-+... ...+.++.+...|+++-++ +++.+... .....+.+.+.+.++
T Consensus 83 ~aDvVi~~vp~~-------~~~~~~~~l~~~l~~~~iv-vd~st~~~-----------------~~~~~~~~~~~~~~~ 136 (312)
T 3qsg_A 83 ECDVIFSLVTAQ-------AALEVAQQAGPHLCEGALY-ADFTSCSP-----------------AVKRAIGDVISRHRP 136 (312)
T ss_dssp HCSEEEECSCTT-------THHHHHHHHGGGCCTTCEE-EECCCCCH-----------------HHHHHHHHHHHHHCT
T ss_pred cCCEEEEecCch-------hHHHHHHhhHhhcCCCCEE-EEcCCCCH-----------------HHHHHHHHHHHhhcC
Confidence 579999855332 2345678888888886654 56665443 345566666776654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.63 Score=43.21 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=58.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. . ++.- |..+-+.+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-g~~-----------~-~~d~~~~~~~~~i~~~ 209 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL-GCH-----------H-TINYSTQDFAEVVREI 209 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS-----------E-EEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCC-----------E-EEECCCHHHHHHHHHH
Confidence 45678999995 4566666666654 46999999999888888773 321 1 1111 11111211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|++|..+-. +.++.+.+.|+++|.++.
T Consensus 210 ~~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~ 242 (333)
T 1wly_A 210 TGGKGVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAA 242 (333)
T ss_dssp HTTCCEEEEEECSCT-----------TTHHHHHHTEEEEEEEEE
T ss_pred hCCCCCeEEEECCcH-----------HHHHHHHHhhccCCEEEE
Confidence 23579999853311 246778889999998764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.82 E-value=0.83 Score=41.78 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=59.3
Q ss_pred cCCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc-ccccccCC
Q 038076 138 IVPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV-FSPSEDAS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa-~~~l~~~~ 214 (345)
+.+.++||++|+ |.|..+..+++.. +.+|++++.+++-.+.+++ ++.. .++.-+- .++.+..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-~ga~------------~~~~~~~~~~~~~~~- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA-LGAE------------EAATYAEVPERAKAW- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH-TTCS------------EEEEGGGHHHHHHHT-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-cCCC------------EEEECCcchhHHHHh-
Confidence 345688999997 3466666777665 4699999999998888876 3321 1222111 1222222
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+. ... +.++.+.+.|+++|.++.
T Consensus 188 ~~~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 188 GGLDLVLE-VRG-----------KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp TSEEEEEE-CSC-----------TTHHHHHTTEEEEEEEEE
T ss_pred cCceEEEE-CCH-----------HHHHHHHHhhccCCEEEE
Confidence 57999985 421 136778889999998764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=88.70 E-value=2 Score=42.24 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCC-------CCCcEEEEEccccccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTA-------TGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~-------~~~rv~v~~gDa~~~l~~ 212 (345)
-++.+||+| |..++..+.+. +.+|+++|+|++.++..++.- .+-.+.... ...++++ ..|..+-+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~-~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~-- 82 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNV-MPIYEPGLDALVASNVKAGRLSF-TTDLAEGV-- 82 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTC-CSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred eEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCC-CCccCCCHHHHHHhhcccCCEEE-ECCHHHHH--
Confidence 478999999 44555566653 579999999999988766521 110000000 0123332 23332222
Q ss_pred CCCcccEEEEcCCCCC----CCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHH
Q 038076 213 ASGRYAGIVVDLFSEG----KVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRA 288 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~----~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~ 288 (345)
+.-|+||+-+.++. ..|.--+-.+.++.+.+.|++|-++ ++..+.+. ...+.+.+.
T Consensus 83 --~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iV-V~~STv~p-----------------gtt~~l~~~ 142 (446)
T 4a7p_A 83 --KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVI-VTKSTVPV-----------------GTGDEVERI 142 (446)
T ss_dssp --TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEE-EECSCCCT-----------------THHHHHHHH
T ss_pred --hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEE-EEeCCCCc-----------------hHHHHHHHH
Confidence 45799998765542 1122123456778888889876555 55554443 235566666
Q ss_pred HHHHCC
Q 038076 289 LSEAFP 294 (345)
Q Consensus 289 l~~~F~ 294 (345)
+.+..+
T Consensus 143 l~e~~~ 148 (446)
T 4a7p_A 143 IAEVAP 148 (446)
T ss_dssp HHHHST
T ss_pred HHHhCC
Confidence 666654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=0.5 Score=44.42 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=59.5
Q ss_pred CCC--CCEEEEee--cccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccc
Q 038076 139 VPN--GPIAIYGL--GGGTAAHLMLDLWPSL-KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPS 210 (345)
Q Consensus 139 ~~p--~~VLiIG~--G~G~~~~~l~~~~p~~-~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l 210 (345)
.+. ++||+.|+ |.|..+..+++.. +. +|.+++.+++-.+.+++.++.. . ++. .|..+.+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~-----------~-~~d~~~~~~~~~~ 223 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFD-----------A-AINYKKDNVAEQL 223 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCS-----------E-EEETTTSCHHHHH
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc-----------e-EEecCchHHHHHH
Confidence 355 78999997 3455555666554 45 9999999998888888755521 1 111 1111112
Q ss_pred cc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 211 ED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 211 ~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.. ..+.+|++|..+- .+.++.+.+.|+++|.++.
T Consensus 224 ~~~~~~~~d~vi~~~G-----------~~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 224 RESCPAGVDVYFDNVG-----------GNISDTVISQMNENSHIIL 258 (357)
T ss_dssp HHHCTTCEEEEEESCC-----------HHHHHHHHHTEEEEEEEEE
T ss_pred HHhcCCCCCEEEECCC-----------HHHHHHHHHHhccCcEEEE
Confidence 11 2237999885321 2567888899999999874
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.49 E-value=0.45 Score=44.60 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE----ccccccccc
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI----GDVFSPSED 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~----gDa~~~l~~ 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|++++.+++-.+.+++. +.. .++. .|..+.+..
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~-g~~------------~~~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI-GGE------------VFIDFTKEKDIVGAVLK 233 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT-TCC------------EEEETTTCSCHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc-CCc------------eEEecCccHhHHHHHHH
Confidence 45678999998 3455565666554 46999999999888888763 321 1111 111122221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.++.+|+|+...- ..+.++.+.+.|+++|.++.
T Consensus 234 ~~~~~~D~vi~~~g----------~~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 234 ATDGGAHGVINVSV----------SEAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp HHTSCEEEEEECSS----------CHHHHHHHTTSEEEEEEEEE
T ss_pred HhCCCCCEEEECCC----------cHHHHHHHHHHHhcCCEEEE
Confidence 1227999985331 13578888999999998763
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.72 Score=43.18 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=59.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+.++||++|+ |.|..+..+++.. +.+|.++ .+++-.+.+++. +.. . +. ...|..+.+.. ..
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l-Ga~---------~-i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL-GAT---------P-ID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH-TSE---------E-EE-TTSCHHHHHHHHHTT
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc-CCC---------E-ec-cCCCHHHHHHHHhcC
Confidence 45688999994 3567777777764 5689999 899989988774 321 1 21 11122222211 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+-.+ . .+.++.+.+.|+++|.++.
T Consensus 215 ~g~D~vid~~-g----------~~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 215 QGFDLVYDTL-G----------GPVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp SCEEEEEESS-C----------THHHHHHHHHEEEEEEEEE
T ss_pred CCceEEEECC-C----------cHHHHHHHHHHhcCCeEEE
Confidence 5799888422 1 1367788889999999875
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.37 E-value=1.2 Score=40.63 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCCEEEEeec--ccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+|.+||+| |+.++..+.+. ++..+|+++|.+++-.+..++.++ +++ ..|..+.+ +..
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g-------------i~~-~~~~~~~~----~~a 64 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG-------------VHT-TQDNRQGA----LNA 64 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC-------------CEE-ESCHHHHH----SSC
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC-------------CEE-eCChHHHH----hcC
Confidence 3689999998 55666666654 223489999999998887776543 222 23333322 457
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhc-cCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDR-LMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~-L~pgGvlv 254 (345)
|+||+-+ ++ -...+.++.++.. ++++-+++
T Consensus 65 DvVilav------~p-~~~~~vl~~l~~~~l~~~~iii 95 (280)
T 3tri_A 65 DVVVLAV------KP-HQIKMVCEELKDILSETKILVI 95 (280)
T ss_dssp SEEEECS------CG-GGHHHHHHHHHHHHHTTTCEEE
T ss_pred CeEEEEe------CH-HHHHHHHHHHHhhccCCCeEEE
Confidence 9999854 22 2346788888888 87665555
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.30 E-value=0.42 Score=44.96 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||++|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.. |..+.+..
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL-GAK------------RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCC------------EEEeCCchHHHHHHHHH
Confidence 45678999964 3566666777664 57999999999999999874 321 11211 11111111
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+-.+ .. +.++.+.+.|+++|.++.
T Consensus 232 ~~~g~Dvvid~~-g~----------~~~~~~~~~l~~~G~iv~ 263 (353)
T 4dup_A 232 TGQGVDIILDMI-GA----------AYFERNIASLAKDGCLSI 263 (353)
T ss_dssp HSSCEEEEEESC-CG----------GGHHHHHHTEEEEEEEEE
T ss_pred hCCCceEEEECC-CH----------HHHHHHHHHhccCCEEEE
Confidence 246799988532 11 246778889999999764
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=88.23 E-value=0.88 Score=41.76 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=52.4
Q ss_pred CCcccEEEEcCCCCCCCCCCcc--------hHHH-HHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHH
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLE--------EVAT-WLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNS 284 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~--------t~ef-~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~ 284 (345)
-.+||+||+++-.+-. .|-| .... -....++|+|||.+++-..+.-. +..+.
T Consensus 209 ~grYDlVfvNv~TpyR--~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyAD-----------------R~SE~ 269 (324)
T 3trk_A 209 LGRYDLVVINIHTPFR--IHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYAD-----------------RTSER 269 (324)
T ss_dssp GCCEEEEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCS-----------------HHHHH
T ss_pred CCceeEEEEecCCccc--cchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccc-----------------cchHH
Confidence 3899999999866422 2211 1111 22456789999999988776654 46788
Q ss_pred HHHHHHHHCCCCEEEEEecC---CCCceEEEEeC
Q 038076 285 AIRALSEAFPGKVSWKRMPE---RNGENFLALTG 315 (345)
Q Consensus 285 ~~~~l~~~F~~~v~~~~~~~---~~~~n~v~~a~ 315 (345)
++.++.+.|. .+.+.+ |. ++-+++++|..
T Consensus 270 vV~alARkF~-~~rv~~-P~cv~snTEv~~vF~~ 301 (324)
T 3trk_A 270 VICVLGRKFR-SSRALK-PPCVTSNTEMFFLFSN 301 (324)
T ss_dssp HHHHHHTTEE-EEEEEC-CTTCCBTTCEEEEEEE
T ss_pred HHHHHHhhhe-eeeeec-CccccccceEEEEEEe
Confidence 9999999998 555432 32 23345565553
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=3.5 Score=38.05 Aligned_cols=122 Identities=13% Similarity=0.002 Sum_probs=80.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+|++|=+|.|.+..-+.+. +-..+-++|+|+..++.-+.+|+ -+++.+|..+.-...-...|+|+.
T Consensus 2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~-------------~~~~~~DI~~i~~~~~~~~D~l~g 67 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS-------------AKLIKGDISKISSDEFPKCDGIIG 67 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCC-------------SEEEESCGGGCCGGGSCCCSEEEC
T ss_pred eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC-------------CCcccCChhhCCHhhCCcccEEEe
Confidence 6899999999888877764 33567799999999999888874 147889998865444467899885
Q ss_pred cCCCCC----C----CCCC--cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 223 DLFSEG----K----VLPQ--LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 223 D~f~~~----~----~p~~--l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
-.+..+ + .-.. -.-.+++ .+.+.++|.-+++=|+.+--.. .. ...++.+++.|.+.
T Consensus 68 gpPCQ~fS~ag~~~g~~d~R~~L~~~~~-r~i~~~~Pk~~~~ENV~gl~~~---~~----------~~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 68 GPPSQSWSEGGSLRGIDDPRGKLFYEYI-RILKQKKPIFFLAENVKGMMAQ---RH----------NKAVQEFIQEFDNA 133 (331)
T ss_dssp CCCGGGTEETTEECCTTCGGGHHHHHHH-HHHHHHCCSEEEEEECCGGGGC---TT----------SHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCCccCCCCchhHHHHHHH-HHHhccCCeEEEeeeecccccc---cc----------cchhhhhhhhhccC
Confidence 432221 1 1111 1112333 3455689998888898754321 11 14677778888765
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=1.3 Score=40.69 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=59.3
Q ss_pred CEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 143 PIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
+||++|+ |.|..+.++++.. +.+|++++.+++-.+.+++. +.. .++..+-...++. ....+|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~~~~~~~d~ 214 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL-GAN------------RILSRDEFAESRPLEKQLWAG 214 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH-TCS------------EEEEGGGSSCCCSSCCCCEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCC------------EEEecCCHHHHHhhcCCCccE
Confidence 5999996 4677888888775 46999999999999999874 422 1121111111222 3457998
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+ |... .+.++.+.+.|+++|.++.
T Consensus 215 v~-d~~g----------~~~~~~~~~~l~~~G~iv~ 239 (324)
T 3nx4_A 215 AI-DTVG----------DKVLAKVLAQMNYGGCVAA 239 (324)
T ss_dssp EE-ESSC----------HHHHHHHHHTEEEEEEEEE
T ss_pred EE-ECCC----------cHHHHHHHHHHhcCCEEEE
Confidence 76 4321 2378889999999999874
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=88.09 E-value=2.9 Score=41.02 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC---C---CCCcEEEEEcccccccccC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT---A---TGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~---~---~~~rv~v~~gDa~~~l~~~ 213 (345)
.+|.+||+| |+.++..+.+..++.+|+++|++++.++..++. ..+-.+... . ...+++. ..|..+-
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g-~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~---- 79 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSP-TLPIYEPGLKEVVESCRGKNLFF-STNIDDA---- 79 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSS-SCSSCCTTHHHHHHHHBTTTEEE-ESCHHHH----
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCC-CCCcCCCCHHHHHHHhhcCCEEE-ECCHHHH----
Confidence 579999999 556777777654467899999999988765432 111000000 0 0012221 1222111
Q ss_pred CCcccEEEEcCCCCCCC--------CCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 214 SGRYAGIVVDLFSEGKV--------LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~--------p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-+..|+||+-+.++... +.--+..+..+.+.+.|++|. ++++..+...
T Consensus 80 ~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~-iVV~~STv~~ 135 (467)
T 2q3e_A 80 IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYK-IVTEKSTVPV 135 (467)
T ss_dssp HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEE-EEEECSCCCT
T ss_pred HhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCC-EEEECCcCCc
Confidence 13579999877554321 111123466777888888755 5567665443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=88.09 E-value=0.41 Score=47.28 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCEEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
..+|+++|+| .++..+.+.. .+..|++||.|++.++.+.+.++ +.+++||+.+. |+. .-+
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~-------------~~~i~Gd~~~~~~L~~Agi~ 67 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD-------------LRVVNGHASHPDVLHEAGAQ 67 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS-------------CEEEESCTTCHHHHHHHTTT
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC-------------cEEEEEcCCCHHHHHhcCCC
Confidence 3578888877 3333333332 35789999999999998777664 56899999874 333 346
Q ss_pred cccEEEE
Q 038076 216 RYAGIVV 222 (345)
Q Consensus 216 ~yD~Ii~ 222 (345)
..|+++.
T Consensus 68 ~ad~~ia 74 (461)
T 4g65_A 68 DADMLVA 74 (461)
T ss_dssp TCSEEEE
T ss_pred cCCEEEE
Confidence 7888775
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=87.97 E-value=0.98 Score=40.14 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCEEEEeec--ccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+|.+||+| |+.+++.+.+. .+..+|.++|.+++-.+...+.++. + ...|..+.+ +..
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~-------------~-~~~~~~e~~----~~a 64 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGL-------------T-TTTDNNEVA----KNA 64 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCC-------------E-ECSCHHHHH----HHC
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCC-------------E-EeCChHHHH----HhC
Confidence 579999998 55677777653 1224899999999988877654442 1 112322322 358
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+||+-+. + -...+.++.+...++|+-+++
T Consensus 65 DvVilav~------~-~~~~~v~~~l~~~l~~~~~vv 94 (247)
T 3gt0_A 65 DILILSIK------P-DLYASIINEIKEIIKNDAIIV 94 (247)
T ss_dssp SEEEECSC------T-TTHHHHC---CCSSCTTCEEE
T ss_pred CEEEEEeC------H-HHHHHHHHHHHhhcCCCCEEE
Confidence 99998551 1 134567777888888877665
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.93 E-value=2.1 Score=42.30 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=62.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHH-HHH----HhcCCCCCCC--CCCCCCcEEEEEccccccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILID-KVR----DYFGLSDLEK--PTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~-~A~----~~f~~~~~~~--~~~~~~rv~v~~gDa~~~l~~ 212 (345)
++|.+||+| |+.++..+++. +.+|+++|++++-.. ..+ +......... ....-.++++. .|. +
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl-~---- 126 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF-H---- 126 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG-G----
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH-H----
Confidence 679999999 56677776653 689999999998110 001 1110000000 00001234432 232 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.-+..|+||.-++. .+ ...+.|+++...++|+-+++.|..+.+
T Consensus 127 al~~aDlVIeAVpe------~~~vk~~v~~~l~~~~~~~aIlasnTSsl~ 170 (460)
T 3k6j_A 127 KLSNCDLIVESVIE------DMKLKKELFANLENICKSTCIFGTNTSSLD 170 (460)
T ss_dssp GCTTCSEEEECCCS------CHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HHccCCEEEEcCCC------CHHHHHHHHHHHHhhCCCCCEEEecCCChh
Confidence 23568999985433 22 346788999999999999988877543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=87.71 E-value=2.9 Score=41.51 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=64.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |..++..+.+. +.+|++.|.+++.++...+.-. . +.++.. ..|..+.++. -+.-|
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~-~--------g~~i~~-~~s~~e~v~~-l~~aD 70 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEA-K--------GTKVVG-AQSLKEMVSK-LKKPR 70 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTT-T--------TSSCEE-CSSHHHHHHT-BCSSC
T ss_pred CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhccc-C--------CCceec-cCCHHHHHhh-ccCCC
Confidence 3589999998 56677777664 4689999999998887665321 1 112211 2333333321 23579
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++-+ |..-...+.++.+...|++|-+ ++++.+...
T Consensus 71 vVil~V------p~~~~v~~vl~~l~~~L~~g~i-IId~st~~~ 107 (484)
T 4gwg_A 71 RIILLV------KAGQAVDDFIEKLVPLLDTGDI-IIDGGNSEY 107 (484)
T ss_dssp EEEECS------CSSHHHHHHHHHHGGGCCTTCE-EEECSCCCH
T ss_pred EEEEec------CChHHHHHHHHHHHHhcCCCCE-EEEcCCCCc
Confidence 999854 3323456778888888987655 567766553
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.53 E-value=2.2 Score=33.56 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccC-CC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDA-SG 215 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~-~~ 215 (345)
.++|+++|+| |..++..+.+ .+.+|+++|.+++-.+.+++ ....++.+|..+. +... -+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~~--------------~~~~~~~~d~~~~~~l~~~~~~ 69 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYAS--------------YATHAVIANATEENELLSLGIR 69 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHTTTT--------------TCSEEEECCTTCHHHHHTTTGG
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH--------------hCCEEEEeCCCCHHHHHhcCCC
Confidence 4689999975 1223333333 24689999999876553222 1134567776542 2221 35
Q ss_pred cccEEEEcC
Q 038076 216 RYAGIVVDL 224 (345)
Q Consensus 216 ~yD~Ii~D~ 224 (345)
.+|+|++-.
T Consensus 70 ~~d~vi~~~ 78 (144)
T 2hmt_A 70 NFEYVIVAI 78 (144)
T ss_dssp GCSEEEECC
T ss_pred CCCEEEECC
Confidence 799999744
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=1.1 Score=42.07 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.. |..+-+..
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~------------~~~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN-GAH------------EVFNHREVNYIDKIKKY 234 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS------------EEEETTSTTHHHHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc-CCC------------EEEeCCCchHHHHHHHH
Confidence 45678999996 3455666666654 57999999999999988764 311 11111 11111211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+||..+ . .+.+..+.+.|+++|.++.
T Consensus 235 ~~~~~~D~vi~~~-G----------~~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 235 VGEKGIDIIIEML-A----------NVNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp HCTTCEEEEEESC-H----------HHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCcEEEEECC-C----------hHHHHHHHHhccCCCEEEE
Confidence 234799998532 1 1356778899999999864
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=2.9 Score=40.62 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=62.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCC--------CCcEEEEEccccccccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTAT--------GGVLQVHIGDVFSPSED 212 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~--------~~rv~v~~gDa~~~l~~ 212 (345)
+|.+||+| |+.++..+.+. +.+|+++|+|++.++..++.- .+-.+. ... ..+++. ..|..+-+
T Consensus 2 kI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~~~~~l~~~~-~~i~e~-~l~~~~~~~~~~g~l~~-t~~~~~~~-- 74 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGK-SPIVEP-GLEALLQQGRQTGRLSG-TTDFKKAV-- 74 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTC-CSSCCT-THHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHhCCC-CCcCCC-CHHHHHHhhcccCceEE-eCCHHHHh--
Confidence 68999998 45566666653 468999999999988766521 110000 000 112322 22222211
Q ss_pred CCCcccEEEEcCCCCCC---CCCCcchHHHHHHHHhccCCC--cEEEEEecCCC
Q 038076 213 ASGRYAGIVVDLFSEGK---VLPQLEEVATWLKLKDRLMPN--GRFMVNCGGID 261 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~---~p~~l~t~ef~~~~~~~L~pg--Gvlvvn~~~~~ 261 (345)
+..|+||+-+..+.. .+.--+..+.++.+...|+++ |.++++..+..
T Consensus 75 --~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~ 126 (436)
T 1mv8_A 75 --LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL 126 (436)
T ss_dssp --HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred --ccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence 357999987654321 112123566778888889882 55556665444
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.17 E-value=0.6 Score=43.22 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=57.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. . ++. .|..+-+..
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~-g~~-----------~-~~~~~~~~~~~~~~~~ 204 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GAW-----------Q-VINYREEDLVERLKEI 204 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS-----------E-EEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCC-----------E-EEECCCccHHHHHHHH
Confidence 45678999994 4555555555543 46999999999999988873 321 1 111 111111111
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|++|..+- .+.++.+.+.|+++|.++.
T Consensus 205 ~~~~~~D~vi~~~g-----------~~~~~~~~~~l~~~G~iv~ 237 (327)
T 1qor_A 205 TGGKKVRVVYDSVG-----------RDTWERSLDCLQRRGLMVS 237 (327)
T ss_dssp TTTCCEEEEEECSC-----------GGGHHHHHHTEEEEEEEEE
T ss_pred hCCCCceEEEECCc-----------hHHHHHHHHHhcCCCEEEE
Confidence 2347999985431 1347788899999998864
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=5.3 Score=39.45 Aligned_cols=102 Identities=15% Similarity=0.023 Sum_probs=64.2
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++|.+||+| |+.++..+.+. +.+|++++.+++.++...+..+ +.+++. ..|..+.++ .-++.
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~~~~~~~l~~~~~----------~~gi~~-~~s~~e~v~-~l~~a 79 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESR--GYTVSIFNRSREKTEEVIAENP----------GKKLVP-YYTVKEFVE-SLETP 79 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHST----------TSCEEE-CSSHHHHHH-TBCSS
T ss_pred CCCeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhCC----------CCCeEE-eCCHHHHHh-CCCCC
Confidence 35789999998 55666666653 5689999999998876655331 112322 223333332 11358
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+||+-+.. .-...+.++.+...|+||- +++++.+...
T Consensus 80 DvVil~Vp~------~~~v~~vl~~l~~~l~~g~-iIId~s~g~~ 117 (480)
T 2zyd_A 80 RRILLMVKA------GAGTDAAIDSLKPYLDKGD-IIIDGGNTFF 117 (480)
T ss_dssp CEEEECSCS------SSHHHHHHHHHGGGCCTTC-EEEECSCCCH
T ss_pred CEEEEECCC------HHHHHHHHHHHHhhcCCCC-EEEECCCCCH
Confidence 999985433 2245678888888888765 4557766553
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.05 E-value=2 Score=38.96 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCEEEEee-c--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 142 GPIAIYGL-G--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~-G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+||+ | |+.++..+.+. +.+|+++|.+++-.+.+++ .+.. . .|..+ .-+..|
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~-~g~~-----------~----~~~~~----~~~~aD 69 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQG-MGIP-----------L----TDGDG----WIDEAD 69 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHH-TTCC-----------C----CCSSG----GGGTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHh-cCCC-----------c----CCHHH----HhcCCC
Confidence 47999999 8 55666666653 4689999999998877666 2311 1 12222 224689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+||+-+ |+. ...+.++.+...++++.++ +++
T Consensus 70 vVi~av------~~~-~~~~v~~~l~~~l~~~~iv-v~~ 100 (286)
T 3c24_A 70 VVVLAL------PDN-IIEKVAEDIVPRVRPGTIV-LIL 100 (286)
T ss_dssp EEEECS------CHH-HHHHHHHHHGGGSCTTCEE-EES
T ss_pred EEEEcC------Cch-HHHHHHHHHHHhCCCCCEE-EEC
Confidence 999843 222 2567888888888877655 443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=86.88 E-value=3.2 Score=39.07 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=69.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECC-HHHHHHHHHhcCCC----------CCC----CCCCCCCcEEEEEc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEID-EILIDKVRDYFGLS----------DLE----KPTATGGVLQVHIG 204 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEid-p~vi~~A~~~f~~~----------~~~----~~~~~~~rv~v~~g 204 (345)
+...|+.||||-.+..-.+....+ .++.+|+| |++++.-++.+.-. ... ......++.+++-.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~--~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFP--HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCT--TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCC--CCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 457899999999999888876555 45666666 99999876664211 000 00001368999999
Q ss_pred cccc--cc----ccC--CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE-EEEecCC
Q 038076 205 DVFS--PS----EDA--SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF-MVNCGGI 260 (345)
Q Consensus 205 Da~~--~l----~~~--~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl-vvn~~~~ 260 (345)
|.++ |+ ... .....+++...-.. ++ +.-...++++.+.+++ |+|.+ ++.....
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~-YL-~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLC-YM-HNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGG-GS-CHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhh-CC-CHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 9987 42 222 24456666543221 22 2223456677777776 67765 4555444
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=86.59 E-value=1.5 Score=39.73 Aligned_cols=92 Identities=11% Similarity=0.131 Sum_probs=56.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| |..++..+.+. +.+|+++|.+++-.+...+. + ++ ...|..+.+ +..|+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-g-------------~~-~~~~~~~~~----~~aDv 60 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPEKAEELAAL-G-------------AE-RAATPCEVV----ESCPV 60 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-T-------------CE-ECSSHHHHH----HHCSE
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-C-------------Ce-ecCCHHHHH----hcCCE
Confidence 479999998 55666666653 57899999999887766553 1 11 112333322 34699
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+.+ .....+.+ +.+...|++|.+ ++++.+..
T Consensus 61 vi~~vp~------~~~~~~v~~~~~~l~~~l~~~~~-vi~~st~~ 98 (287)
T 3pef_A 61 TFAMLAD------PAAAEEVCFGKHGVLEGIGEGRG-YVDMSTVD 98 (287)
T ss_dssp EEECCSS------HHHHHHHHHSTTCHHHHCCTTCE-EEECSCCC
T ss_pred EEEEcCC------HHHHHHHHcCcchHhhcCCCCCE-EEeCCCCC
Confidence 9985432 22334555 666777887655 46775444
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.40 E-value=5.9 Score=34.17 Aligned_cols=71 Identities=17% Similarity=0.034 Sum_probs=46.8
Q ss_pred CCEEEEeecccH---HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc------ccc
Q 038076 142 GPIAIYGLGGGT---AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP------SED 212 (345)
Q Consensus 142 ~~VLiIG~G~G~---~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~------l~~ 212 (345)
++||+.|+++|. +++.+++ .+.+|.+++.+++-.+...+.++ .++.++..|..+. ++.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~ 68 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDA--EGKATYLTGRSESKLSTVTNCLS-----------NNVGYRARDLASHQEVEQLFEQ 68 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHTCS-----------SCCCEEECCTTCHHHHHHHHHS
T ss_pred CEEEEecCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHh-----------hccCeEeecCCCHHHHHHHHHH
Confidence 468888877552 3344443 35789999999988876666442 3567888887763 223
Q ss_pred CCCcccEEEEcCC
Q 038076 213 ASGRYAGIVVDLF 225 (345)
Q Consensus 213 ~~~~yD~Ii~D~f 225 (345)
..+.+|+++..+-
T Consensus 69 ~~~~~d~lv~~Ag 81 (230)
T 3guy_A 69 LDSIPSTVVHSAG 81 (230)
T ss_dssp CSSCCSEEEECCC
T ss_pred HhhcCCEEEEeCC
Confidence 4556799998653
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.36 E-value=1.7 Score=40.36 Aligned_cols=109 Identities=14% Similarity=-0.029 Sum_probs=70.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---CC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---SG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~~ 215 (345)
.+.++++|=+|.|.+...+.+.--... +.++|+|+..++.-+.++. ...++.+|..++.... ..
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------------~~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------------GKIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------------TCEEEECCGGGCCHHHHHHTC
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------------CCceeCCChHHccHHHhcccC
Confidence 456899999999999888876411122 6899999999998887763 2357889999875321 24
Q ss_pred cccEEEEcCCCCC----C-----CCC--CcchHHHHHHHHhccCCC-------cEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEG----K-----VLP--QLEEVATWLKLKDRLMPN-------GRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~----~-----~p~--~l~t~ef~~~~~~~L~pg-------Gvlvvn~~~~~ 261 (345)
.+|+|+...+..+ . .-. .-.-.++++ +.+.++|. =+++=|+.+-.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~r-ii~~~~P~~~~~~P~~~l~ENV~gl~ 145 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYR-LLHDARPKEGDDRPFFWLFENVVAMG 145 (295)
T ss_dssp CCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHH-HHHHHSCCTTCCCCCEEEEEEESSBC
T ss_pred CcCEEEecCCCccccccCccccccccccchhHHHHHH-HHHHhCcccccCCccEEEEEcCcchh
Confidence 6999997653321 1 101 011234444 34457777 45666887654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=5.8 Score=36.73 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=44.5
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcC-CCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFG-LSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~-~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
++.+|.+||+| |++++..+.......+|..+|+|++..+. +.+... .+. ....+++..+|. + .-+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~------~~~~~~i~~~~~-~----al~ 73 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVF------APKPVDIWHGDY-D----DCR 73 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTS------SSSCCEEEECCG-G----GTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhh------cCCCeEEEcCcH-H----HhC
Confidence 34689999998 55566666554334589999999975553 222111 111 122455654432 2 235
Q ss_pred cccEEEEcCCC
Q 038076 216 RYAGIVVDLFS 226 (345)
Q Consensus 216 ~yD~Ii~D~f~ 226 (345)
..|+||+-+..
T Consensus 74 ~aDvViia~~~ 84 (316)
T 1ldn_A 74 DADLVVICAGA 84 (316)
T ss_dssp TCSEEEECCSC
T ss_pred CCCEEEEcCCC
Confidence 68999986543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.33 E-value=1.8 Score=45.14 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCC-----CCCCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKP-----TATGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~-----~~~~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..+.+ .+.+|+++|++++.++.++++.. +...... .....+++.. .|. +-
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~-~~ 388 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDY-ES 388 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSS-GG
T ss_pred cEEEEEcCCHhhHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCH-HH
Confidence 579999998 4566666654 36789999999999887654310 0000000 0011344432 232 21
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
-+.-|+||.-++. .+ ...+.++.+...++|+-+++.|..+.
T Consensus 389 ----~~~aDlVIeaVpe------~~~vk~~v~~~l~~~~~~~~IlasntStl 430 (725)
T 2wtb_A 389 ----FRDVDMVIEAVIE------NISLKQQIFADLEKYCPQHCILASNTSTI 430 (725)
T ss_dssp ----GTTCSEEEECCCS------CHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred ----HCCCCEEEEcCcC------CHHHHHHHHHHHHhhCCCCcEEEeCCCCC
Confidence 2567999985533 22 24578888999999999888786543
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=1.8 Score=38.96 Aligned_cols=89 Identities=16% Similarity=-0.025 Sum_probs=53.7
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |..++..+.+ +.+|+++|.+++-.+...+. +.. .. + +...-+..|+
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~-g~~-------------~~--~----~~~~~~~~D~ 58 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE-FGS-------------EA--V----PLERVAEARV 58 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH-HCC-------------EE--C----CGGGGGGCSE
T ss_pred CeEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC-CCc-------------cc--C----HHHHHhCCCE
Confidence 379999998 3445555554 56799999999887765553 211 11 1 1111246899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|++-+.. .....+.++.+...|++|.+ ++++...
T Consensus 59 vi~~v~~------~~~~~~v~~~l~~~l~~~~~-vv~~s~~ 92 (289)
T 2cvz_A 59 IFTCLPT------TREVYEVAEALYPYLREGTY-WVDATSG 92 (289)
T ss_dssp EEECCSS------HHHHHHHHHHHTTTCCTTEE-EEECSCC
T ss_pred EEEeCCC------hHHHHHHHHHHHhhCCCCCE-EEECCCC
Confidence 9984432 22234566777777877654 4566543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.14 E-value=3.9 Score=37.40 Aligned_cols=93 Identities=9% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
..+++|++||+| .|......++.+ +.+|+++|.+++-.+.+.+ ++ .+.+. .+ +.+.-+.
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~-~g-------------~~~~~~~~----l~~~l~~ 215 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARITE-MG-------------LVPFHTDE----LKEHVKD 215 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TT-------------CEEEEGGG----HHHHSTT
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-CC-------------CeEEchhh----HHHHhhC
Confidence 357899999987 232222223334 4699999999976554444 22 12221 22 2222357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.|+|++-+ |.++.+.+. .+.++|++++ +|+....
T Consensus 216 aDvVi~~~------p~~~i~~~~----~~~mk~g~~l-in~a~g~ 249 (300)
T 2rir_A 216 IDICINTI------PSMILNQTV----LSSMTPKTLI-LDLASRP 249 (300)
T ss_dssp CSEEEECC------SSCCBCHHH----HTTSCTTCEE-EECSSTT
T ss_pred CCEEEECC------ChhhhCHHH----HHhCCCCCEE-EEEeCCC
Confidence 99999743 334555443 3567877654 6887543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=0.83 Score=42.94 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=57.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+.++||+.|+ |.|..+..+++.. +.+|.+++.+++-.+.+++. +.. .++.- |..+-+..
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL-GAA------------AGFNYKKEDFSEATLKF 226 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCc------------EEEecCChHHHHHHHHH
Confidence 45678999984 4555666666554 57999999999999988654 321 11111 11111211
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|++|..+-. +.++.+.+.|+++|.++.
T Consensus 227 ~~~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~ 259 (354)
T 2j8z_A 227 TKGAGVNLILDCIGG-----------SYWEKNVNCLALDGRWVL 259 (354)
T ss_dssp TTTSCEEEEEESSCG-----------GGHHHHHHHEEEEEEEEE
T ss_pred hcCCCceEEEECCCc-----------hHHHHHHHhccCCCEEEE
Confidence 23479999853311 135667788999999864
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=85.70 E-value=3.8 Score=37.85 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...+|.+||+| |..++..+.+. +.+|+++|.+++-.+...+. + ++ ...|..+.+ +..
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~l~~~-g-------------~~-~~~~~~e~~----~~a 88 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTPARAASLAAL-G-------------AT-IHEQARAAA----RDA 88 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-T-------------CE-EESSHHHHH----TTC
T ss_pred CCCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHC-C-------------CE-eeCCHHHHH----hcC
Confidence 34689999998 44566666653 57899999999987765442 1 21 123333332 457
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHH--HHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWL--KLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~--~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++-+.++ ....+.+. .+...++++.+ ++++.+...
T Consensus 89 DvVi~~vp~~------~~~~~v~~~~~~~~~l~~~~~-vi~~st~~~ 128 (320)
T 4dll_A 89 DIVVSMLENG------AVVQDVLFAQGVAAAMKPGSL-FLDMASITP 128 (320)
T ss_dssp SEEEECCSSH------HHHHHHHTTTCHHHHCCTTCE-EEECSCCCH
T ss_pred CEEEEECCCH------HHHHHHHcchhHHhhCCCCCE-EEecCCCCH
Confidence 9999854321 12334444 55566776654 567765543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.64 E-value=2.4 Score=41.89 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |+.++..+.+. +.+|++++.+++.++...+..+..+ ...++. ...|..+.++. -+..|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~g~~~------~~~~i~-~~~~~~e~v~~-l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAP------FAGNLK-AFETMEAFAAS-LKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTST------TGGGEE-ECSCHHHHHHH-BCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCCC------CCCCeE-EECCHHHHHhc-ccCCCE
Confidence 479999988 55666666653 4679999999998887766544221 012232 12233333221 125899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+.. .....+.++.+...|++|-+ ++++.+..
T Consensus 72 VilaVp~------~~~v~~vl~~l~~~l~~g~i-IId~sng~ 106 (478)
T 1pgj_A 72 ALILVQA------GAATDSTIEQLKKVFEKGDI-LVDTGNAH 106 (478)
T ss_dssp EEECCCC------SHHHHHHHHHHHHHCCTTCE-EEECCCCC
T ss_pred EEEecCC------hHHHHHHHHHHHhhCCCCCE-EEECCCCC
Confidence 9985433 22346677888888887654 45665443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=85.55 E-value=2.6 Score=36.80 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=60.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--cccc-CCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP--SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~-~~~ 215 (345)
.++++++|+| .++..+.+..- +. |+++|.||+.++.++ . .+.++.+|+.+ .++. .-+
T Consensus 9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~-------------~~~~i~gd~~~~~~l~~a~i~ 70 (234)
T 2aef_A 9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR--S-------------GANFVHGDPTRVSDLEKANVR 70 (234)
T ss_dssp -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--T-------------TCEEEESCTTCHHHHHHTTCT
T ss_pred CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--c-------------CCeEEEcCCCCHHHHHhcCcc
Confidence 4689999874 55555554432 35 999999999877655 2 25789999875 2332 246
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
..|.|++-..+. ..........+.+.|+..+++.+....
T Consensus 71 ~ad~vi~~~~~d-------~~n~~~~~~a~~~~~~~~iia~~~~~~ 109 (234)
T 2aef_A 71 GARAVIVDLESD-------SETIHCILGIRKIDESVRIIAEAERYE 109 (234)
T ss_dssp TCSEEEECCSCH-------HHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred hhcEEEEcCCCc-------HHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence 789998743221 112234445566888877776665443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=0.12 Score=61.16 Aligned_cols=102 Identities=10% Similarity=0.052 Sum_probs=47.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP-----SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p-----~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..+||+||.|+|..+..+++... ..+.+..|+++...+.|++.|..- .+..-.=|..+.-.....
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----------di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----------HVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----------TEEEECCCSSCCCC----
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----------ccccccccccccccCCCC
Confidence 46899999999987776665433 247888999998887777766310 011000011000000245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.||+||..---+.. . ...+.++++++.|+|||.+++.
T Consensus 1311 ~ydlvia~~vl~~t--~--~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1311 KADLLVCNCALATL--G--DPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp -CCEEEEECC------------------------CCEEEEE
T ss_pred ceeEEEEccccccc--c--cHHHHHHHHHHhcCCCcEEEEE
Confidence 69999964211110 1 1245788999999999998774
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=8.8 Score=35.37 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=57.3
Q ss_pred CCCEEEEeec--ccHHHHHHHHhC--CCCEEEEEECCHH--HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLW--PSLKLEGWEIDEI--LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~--p~~~v~~VEidp~--vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
..+|.+||+| |+.++..|.+.. +..+|++++.+++ -.+..+++ + +++ ..|..+. -
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~-G-------------~~~-~~~~~e~----~ 82 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM-G-------------VKL-TPHNKET----V 82 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH-T-------------CEE-ESCHHHH----H
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc-C-------------CEE-eCChHHH----h
Confidence 3589999998 667777776531 1257999999985 55544432 2 222 2232222 2
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+..|+||+-+. + -...+.++.+...++++.++ +++.+.
T Consensus 83 ~~aDvVilav~------~-~~~~~vl~~l~~~l~~~~iv-vs~s~g 120 (322)
T 2izz_A 83 QHSDVLFLAVK------P-HIIPFILDEIGADIEDRHIV-VSCAAG 120 (322)
T ss_dssp HHCSEEEECSC------G-GGHHHHHHHHGGGCCTTCEE-EECCTT
T ss_pred ccCCEEEEEeC------H-HHHHHHHHHHHhhcCCCCEE-EEeCCC
Confidence 46899998542 1 24567888888888877654 455433
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=85.16 E-value=3.1 Score=40.91 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=61.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |..++..+.+. +.+|.+++.+++.++...+..+ +.++. ...|..+.++. -++.|+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~----------~~gi~-~~~s~~e~v~~-l~~aDv 71 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR--GYTVAIYNRTTSKTEEVFKEHQ----------DKNLV-FTKTLEEFVGS-LEKPRR 71 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTT----------TSCEE-ECSSHHHHHHT-BCSSCE
T ss_pred CcEEEEeeHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHhCc----------CCCeE-EeCCHHHHHhh-ccCCCE
Confidence 579999998 55666666653 4689999999998877665432 11232 22343333321 235899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+.. .....+.++.+...|++|-+ ++++.+..
T Consensus 72 Vilavp~------~~~v~~vl~~l~~~l~~g~i-iId~s~~~ 106 (474)
T 2iz1_A 72 IMLMVQA------GAATDATIKSLLPLLDIGDI-LIDGGNTH 106 (474)
T ss_dssp EEECCCT------THHHHHHHHHHGGGCCTTCE-EEECSCCC
T ss_pred EEEEccC------chHHHHHHHHHHhhCCCCCE-EEECCCCC
Confidence 9985433 22345677888888887765 45665443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.14 E-value=1.3 Score=41.90 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=58.7
Q ss_pred CCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 139 VPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
.+..+||++|++ .|..+.++++.. +.+|.++- +++-.+.++++ +.. .++. .|..+.+..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l-Ga~------------~vi~~~~~~~~~~v~~~ 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR-GAE------------EVFDYRAPNLAQTIRTY 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT-TCS------------EEEETTSTTHHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc-CCc------------EEEECCCchHHHHHHHH
Confidence 445789999983 577787888765 46787774 88888888774 321 1222 222222222
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvv 255 (345)
.++++|+|+- ... ..+.++.+.+.| +++|.++.
T Consensus 228 t~g~~d~v~d-~~g---------~~~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 228 TKNNLRYALD-CIT---------NVESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp TTTCCCEEEE-SSC---------SHHHHHHHHHHSCTTCEEEEE
T ss_pred ccCCccEEEE-CCC---------chHHHHHHHHHhhcCCCEEEE
Confidence 3456999884 222 135678888889 69999864
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=84.74 E-value=1.3 Score=42.81 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCCCCEEEEeecccHHHHHHH-HhCCC-CEEEEEECCHHHHHHHHHhcCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLML-DLWPS-LKLEGWEIDEILIDKVRDYFGL 186 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~-~~~p~-~~v~~VEidp~vi~~A~~~f~~ 186 (345)
.+...++++|++.|..+..+. +..+. .+|.++|.+|...+..++....
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 355789999999999998877 55554 8999999999999998887643
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=84.68 E-value=2 Score=39.00 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=56.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| |..++..+.+. +.+|+++|.+++-.+...+. + ++ ...|..+.+ +..|+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-g-------------~~-~~~~~~~~~----~~adv 60 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPAKCAPLVAL-G-------------AR-QASSPAEVC----AACDI 60 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGGGGHHHHHH-T-------------CE-ECSCHHHHH----HHCSE
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-C-------------Ce-ecCCHHHHH----HcCCE
Confidence 479999998 55667777664 46899999999887766553 1 11 112333322 34699
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++-+.+ .....+.+ +.+...++++.+ ++++.+...
T Consensus 61 vi~~v~~------~~~~~~v~~~~~~l~~~l~~g~~-vv~~st~~~ 99 (287)
T 3pdu_A 61 TIAMLAD------PAAAREVCFGANGVLEGIGGGRG-YIDMSTVDD 99 (287)
T ss_dssp EEECCSS------HHHHHHHHHSTTCGGGTCCTTCE-EEECSCCCH
T ss_pred EEEEcCC------HHHHHHHHcCchhhhhcccCCCE-EEECCCCCH
Confidence 9985432 22234444 555666776655 457765443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=84.63 E-value=6.4 Score=36.44 Aligned_cols=99 Identities=17% Similarity=0.094 Sum_probs=53.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc--CCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF--GLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f--~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+||+| |..++..+.......+|..+|++++.++.....+ ..+. ....++...|. +- -+..|
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~-------~~~~~i~~~d~-~~----~~~aD 69 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF-------TRRANIYAGDY-AD----LKGSD 69 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG-------SCCCEEEECCG-GG----GTTCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhh-------cCCcEEEeCCH-HH----hCCCC
Confidence 68999987 3445555554321238999999998776533211 1110 01233433442 21 25689
Q ss_pred EEEEcCCCCCCCCCC--c--c------hHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQ--L--E------EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~--l--~------t~ef~~~~~~~L~pgGvlvv 255 (345)
+||+-+..+.. |.. + . -.+..+.+.+. .|++++++
T Consensus 70 vViiav~~~~~-~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~ 114 (319)
T 1a5z_A 70 VVIVAAGVPQK-PGETRLQLLGRNARVMKEIARNVSKY-APDSIVIV 114 (319)
T ss_dssp EEEECCCCCCC-SSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred EEEEccCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEE
Confidence 99987655432 111 0 0 13455555555 58887654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=8.9 Score=35.88 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=42.9
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHH-H---HHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDK-V---RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A---~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
++.+|.+||+| |.+++..+....-..++..+|++++.++- + ..-+.+. ..++++..+|...
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~--------~~~v~i~~~~~~a----- 70 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA--------PQPVKTSYGTYED----- 70 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS--------SSCCEEEEECGGG-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc--------cCCeEEEeCcHHH-----
Confidence 35789999987 33444444443212489999999986653 1 1112211 1345666555322
Q ss_pred CCcccEEEEcCCC
Q 038076 214 SGRYAGIVVDLFS 226 (345)
Q Consensus 214 ~~~yD~Ii~D~f~ 226 (345)
-+..|+||+-+-.
T Consensus 71 ~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 71 CKDADIVCICAGA 83 (326)
T ss_dssp GTTCSEEEECCSC
T ss_pred hCCCCEEEEeccc
Confidence 2568999986533
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=1.3 Score=42.59 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=55.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCC-----CCCCCcEEEEEcccccccccCCC
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKP-----TATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~-----~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
+|.+||+| |+.++..+.+ +.+|+++|++++.++..++.. .+-.+.. .....+++. ..|..+. -+
T Consensus 2 kI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~l~~-t~~~~~~----~~ 72 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINNGL-SPIQDEYIEYYLKSKQLSIKA-TLDSKAA----YK 72 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHTTC-CSSCCHHHHHHHHHSCCCEEE-ESCHHHH----HH
T ss_pred EEEEECCCHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHcCC-CCcCCCCHHHHHHhccCcEEE-eCCHHHH----hc
Confidence 68899998 4455555543 578999999999888665432 1100000 000012221 1222111 13
Q ss_pred cccEEEEcCCCCC----CCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 216 RYAGIVVDLFSEG----KVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 216 ~yD~Ii~D~f~~~----~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
..|+||+-+..+. ..+.--...+.++.+.. ++++.+++
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV 114 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLI 114 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEE
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEE
Confidence 5799998665431 00111135677888888 88876655
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.12 E-value=2.2 Score=39.31 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=56.8
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |..++..+.+. +.+|+++|.+++-++...+. + ++ ...|..+.+ +..|
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-g-------------~~-~~~~~~~~~----~~aD 79 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTLSKCDELVEH-G-------------AS-VCESPAEVI----KKCK 79 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-T-------------CE-ECSSHHHHH----HHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-C-------------Ce-EcCCHHHHH----HhCC
Confidence 4689999998 55666666653 56899999999887766542 1 11 112332322 3479
Q ss_pred EEEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+-+.++ ....+.+ +.+...+++|. +++++.+...
T Consensus 80 vvi~~vp~~------~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~ 119 (310)
T 3doj_A 80 YTIAMLSDP------CAALSVVFDKGGVLEQICEGK-GYIDMSTVDA 119 (310)
T ss_dssp EEEECCSSH------HHHHHHHHSTTCGGGGCCTTC-EEEECSCCCH
T ss_pred EEEEEcCCH------HHHHHHHhCchhhhhccCCCC-EEEECCCCCH
Confidence 999854331 1233444 45556677655 4567765443
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.95 E-value=6.1 Score=36.52 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCC-CEEEEEECCH-------HHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPS-LKLEGWEIDE-------ILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPS 210 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~-~~v~~VEidp-------~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l 210 (345)
.+|.+||+| |..++..+.+. + .+|+++|.++ +..+.+.+. .+ .. |..+.+
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~~--------------g~---~~~s~~e~~ 85 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAEL--------------GV---EPLDDVAGI 85 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHHT--------------TC---EEESSGGGG
T ss_pred CeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHHC--------------CC---CCCCHHHHH
Confidence 579999998 55666666653 5 6899999998 444433321 11 22 333332
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+.-|+||+-+.. . ...+.++.+...|+++.+ ++++.+..
T Consensus 86 ----~~aDvVi~avp~------~-~~~~~~~~i~~~l~~~~i-vv~~st~~ 124 (317)
T 4ezb_A 86 ----ACADVVLSLVVG------A-ATKAVAASAAPHLSDEAV-FIDLNSVG 124 (317)
T ss_dssp ----GGCSEEEECCCG------G-GHHHHHHHHGGGCCTTCE-EEECCSCC
T ss_pred ----hcCCEEEEecCC------H-HHHHHHHHHHhhcCCCCE-EEECCCCC
Confidence 457999985433 2 224456788888887665 45666544
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.80 E-value=1.9 Score=40.31 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-C
Q 038076 139 VPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~ 213 (345)
.+..+||+.|++ .|..+.++++.....+|.+++ +++-.+.++ ++.. .++. .|..+-+.+ .
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~------------~~~~~~~~~~~~~~~~~ 205 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVT------------HLFDRNADYVQEVKRIS 205 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSS------------EEEETTSCHHHHHHHHC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCc------------EEEcCCccHHHHHHHhc
Confidence 456889999973 466777777766567898888 555555555 4422 1222 121122211 3
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.+|+||--. .. +.++.+.+.|+++|.+++
T Consensus 206 ~~g~Dvv~d~~-g~----------~~~~~~~~~l~~~G~~v~ 236 (349)
T 4a27_A 206 AEGVDIVLDCL-CG----------DNTGKGLSLLKPLGTYIL 236 (349)
T ss_dssp TTCEEEEEEEC-C-----------------CTTEEEEEEEEE
T ss_pred CCCceEEEECC-Cc----------hhHHHHHHHhhcCCEEEE
Confidence 56899988432 21 123567789999999875
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=83.40 E-value=1.4 Score=40.65 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE----EcccccccccCCC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH----IGDVFSPSEDASG 215 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~----~gDa~~~l~~~~~ 215 (345)
.+|++||+| |+.++..|.+. +.+|+.++-++ . +..++. ++.-. ..++..++. ..|. + .-+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~-~-~~i~~~-g~~~~----~~~g~~~~~~~~~~~~~----~-~~~ 68 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD-Y-EAIAGN-GLKVF----SINGDFTLPHVKGYRAP----E-EIG 68 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT-H-HHHHHT-CEEEE----ETTCCEEESCCCEESCH----H-HHC
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc-H-HHHHhC-CCEEE----cCCCeEEEeeceeecCH----H-HcC
Confidence 589999998 55666666653 46899999987 3 444432 21100 001222210 1111 1 124
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.+|+|++-+.. ....+.++.++..++++.+++
T Consensus 69 ~~D~vilavk~-------~~~~~~l~~l~~~l~~~~~iv 100 (312)
T 3hn2_A 69 PMDLVLVGLKT-------FANSRYEELIRPLVEEGTQIL 100 (312)
T ss_dssp CCSEEEECCCG-------GGGGGHHHHHGGGCCTTCEEE
T ss_pred CCCEEEEecCC-------CCcHHHHHHHHhhcCCCCEEE
Confidence 79999984322 234578999999999987664
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=1.7 Score=40.84 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC--C------CCCCCCCC---CCcEEEEEcccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--S------DLEKPTAT---GGVLQVHIGDVF 207 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~------~~~~~~~~---~~rv~v~~gDa~ 207 (345)
..+|.+||+| |..++..++. .+.+|+.+|++|+.++.+.++..- . ........ -.+++.. .|..
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~ 82 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLA 82 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchH
Confidence 4689999998 3334444443 478999999999988876543310 0 00000000 0122221 1211
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+ .-+..|+|+= .+|+.+ ...+.|+++-+.++|+-+++.|..+...
T Consensus 83 ~----a~~~ad~ViE------av~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~i 128 (319)
T 3ado_A 83 E----AVEGVVHIQE------CVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128 (319)
T ss_dssp H----HTTTEEEEEE------CCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCH
T ss_pred h----HhccCcEEee------ccccHHHHHHHHHHHHHHHhhhcceeehhhhhccc
Confidence 1 1245777773 344443 4678999999999999999999887653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.21 E-value=1.4 Score=40.60 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=54.9
Q ss_pred CEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 143 PIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
+||++|+ |.|..+.++++.. +.+|.+++.+++-.+.+++ ++... -+.....| .+.++. ....+|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~-lGa~~---------~i~~~~~~-~~~~~~~~~~~~d~ 219 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV-LGAKE---------VLAREDVM-AERIRPLDKQRWAA 219 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH-TTCSE---------EEECC----------CCSCCEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-cCCcE---------EEecCCcH-HHHHHHhcCCcccE
Confidence 8999996 4567777777765 4689999999988888877 44221 01100111 111111 2357999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
||--. .. +.++.+.+.|+++|.++.
T Consensus 220 vid~~-g~----------~~~~~~~~~l~~~G~~v~ 244 (328)
T 1xa0_A 220 AVDPV-GG----------RTLATVLSRMRYGGAVAV 244 (328)
T ss_dssp EEECS-TT----------TTHHHHHHTEEEEEEEEE
T ss_pred EEECC-cH----------HHHHHHHHhhccCCEEEE
Confidence 87422 21 136677889999999874
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.17 E-value=3.8 Score=37.02 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |..++..+.+. +.+|.++|.+++-.+..++. + ++. ..|..+.+ +..|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-g-------------~~~-~~~~~~~~----~~~D~ 64 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-G-------------AET-ASTAKAIA----EQCDV 64 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-T-------------CEE-CSSHHHHH----HHCSE
T ss_pred ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-C-------------Cee-cCCHHHHH----hCCCE
Confidence 379999998 44556666553 46899999999987766553 2 111 12222222 35899
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+.. .....+.+ +.+...+++|.++ +++.+..
T Consensus 65 vi~~v~~------~~~~~~~~~~~~~l~~~l~~~~~v-v~~s~~~ 102 (299)
T 1vpd_A 65 IITMLPN------SPHVKEVALGENGIIEGAKPGTVL-IDMSSIA 102 (299)
T ss_dssp EEECCSS------HHHHHHHHHSTTCHHHHCCTTCEE-EECSCCC
T ss_pred EEEECCC------HHHHHHHHhCcchHhhcCCCCCEE-EECCCCC
Confidence 9985432 12233444 4566778887755 6775443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.00 E-value=6.7 Score=38.92 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=62.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-hcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD-YFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~-~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+|.+||+| |..++..+.+. +.+|++++.+++.++...+ ... +.+++. ..|..+.++ .-++.
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----------~~gi~~-~~s~~e~v~-~l~~a 75 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQSKVDHFLANEAK----------GKSIIG-ATSIEDFIS-KLKRP 75 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSHHHHHHHHTTTT----------TSSEEC-CSSHHHHHH-TSCSS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHccccc----------CCCeEE-eCCHHHHHh-cCCCC
Confidence 3589999999 56677777663 5689999999998887665 211 012221 123333322 12357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+||+-+.. .....+.++.+...|+||- +++++.+..
T Consensus 76 DvVil~Vp~------~~~v~~vl~~l~~~l~~g~-iIId~s~~~ 112 (497)
T 2p4q_A 76 RKVMLLVKA------GAPVDALINQIVPLLEKGD-IIIDGGNSH 112 (497)
T ss_dssp CEEEECCCS------SHHHHHHHHHHGGGCCTTC-EEEECSCCC
T ss_pred CEEEEEcCC------hHHHHHHHHHHHHhCCCCC-EEEECCCCC
Confidence 999985433 2245677888888887765 455666554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=14 Score=34.19 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=53.8
Q ss_pred CCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhc-CCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 141 NGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYF-GLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 141 p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f-~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+|.+||+|.- +++..+.......++..+|++++.++- +.+.- ..+. ....+++..+|... -+.
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~------~~~~~~v~~~~~~a-----~~~ 74 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPY------SPTTVRVKAGEYSD-----CHD 74 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGG------SSSCCEEEECCGGG-----GTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhh------cCCCeEEEeCCHHH-----hCC
Confidence 468999998722 333333333223589999999865542 22110 0111 11344555444222 256
Q ss_pred ccEEEEcCCCCCCCCCC------cchHHHHHHHHhc---cCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQ------LEEVATWLKLKDR---LMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~------l~t~ef~~~~~~~---L~pgGvlvvn~~~ 259 (345)
-|+|++-+..+.. |.. ..+...+..+.+. .+|++++++ +.+
T Consensus 75 aDvVvi~ag~~~~-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tN 124 (317)
T 3d0o_A 75 ADLVVICAGAAQK-PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV-ATN 124 (317)
T ss_dssp CSEEEECCCCCCC-TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE-CSS
T ss_pred CCEEEECCCCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecC
Confidence 8999986543322 111 1222334433322 389998875 443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=82.62 E-value=1.4 Score=42.68 Aligned_cols=95 Identities=13% Similarity=-0.058 Sum_probs=59.6
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc----------
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV---------- 206 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa---------- 206 (345)
.+.++||+.|+ |-|..+..+++.. +.++.+++.+++-.+.++++ +... -+.....|.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l-Ga~~---------~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL-GCDL---------VINRAELGITDDIADDPRR 287 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCCC---------EEEHHHHTCCTTGGGCHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCCE---------EEecccccccccccccccc
Confidence 45678999996 3466677777664 57899999999999999764 4221 111111111
Q ss_pred --------ccccc-cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 207 --------FSPSE-DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 207 --------~~~l~-~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+. .....+|+||--+ . .+.++.+.+.|+++|.++.
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~-G----------~~~~~~~~~~l~~~G~iv~ 334 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHT-G----------RVTFGLSVIVARRGGTVVT 334 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECS-C----------HHHHHHHHHHSCTTCEEEE
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECC-C----------chHHHHHHHHHhcCCEEEE
Confidence 11111 1245799988422 1 1357788889999999874
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=82.61 E-value=4.2 Score=37.73 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=57.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhC--C---CCEEEEEECCHH-----HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLW--P---SLKLEGWEIDEI-----LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~--p---~~~v~~VEidp~-----vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+|.+||+| |+.++..+.+.. + ..+|++++.+++ ..+..++.-.............+++. ..|..+.
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 87 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDVVQA 87 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCHHHH
Confidence 479999998 556666666531 0 158999999987 65554442110000000000122332 2232221
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
-+..|+||+-+. + ....+.++.+...++++.+++.
T Consensus 88 ----~~~aD~Vilav~------~-~~~~~v~~~i~~~l~~~~ivv~ 122 (354)
T 1x0v_A 88 ----AEDADILIFVVP------H-QFIGKICDQLKGHLKANATGIS 122 (354)
T ss_dssp ----HTTCSEEEECCC------G-GGHHHHHHHHTTCSCTTCEEEE
T ss_pred ----HcCCCEEEEeCC------H-HHHHHHHHHHHhhCCCCCEEEE
Confidence 246899998542 2 2557788889888888776553
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.59 E-value=1.3 Score=40.55 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=58.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |..++..+.+. +.+|+++|.+++.++...+. + ++ ...|..+. -+ .|
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-g-------------~~-~~~~~~~~----~~-aD 72 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIEAMTPLAEA-G-------------AT-LADSVADV----AA-AD 72 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTTTSHHHHHT-T-------------CE-ECSSHHHH----TT-SS
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-C-------------CE-EcCCHHHH----Hh-CC
Confidence 3589999998 44566665543 56899999999887766552 1 11 11232222 23 89
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+-+.+ .....+.++.+...++++-++ +++.+..
T Consensus 73 vvi~~vp~------~~~~~~v~~~l~~~l~~g~iv-v~~st~~ 108 (296)
T 3qha_A 73 LIHITVLD------DAQVREVVGELAGHAKPGTVI-AIHSTIS 108 (296)
T ss_dssp EEEECCSS------HHHHHHHHHHHHTTCCTTCEE-EECSCCC
T ss_pred EEEEECCC------hHHHHHHHHHHHHhcCCCCEE-EEeCCCC
Confidence 99985432 223456778888888876654 5666544
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.56 E-value=1.5 Score=41.50 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---ccccccccC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~~ 213 (345)
.+..+||+.|+ |.|..+.++++.. +.+|.+++ +++-.+.+++. +.. .++.. |..+-+..
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~l-Ga~------------~v~~~~~~~~~~~~~~- 245 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKL-GAD------------DVIDYKSGSVEEQLKS- 245 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT-TCS------------EEEETTSSCHHHHHHT-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHc-CCC------------EEEECCchHHHHHHhh-
Confidence 35678999993 4667777777765 46899998 67777877653 421 11211 11111221
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...+|+||--. ... ...++...+.|+++|.++.
T Consensus 246 ~~g~D~vid~~-g~~--------~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 246 LKPFDFILDNV-GGS--------TETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp SCCBSEEEESS-CTT--------HHHHGGGGBCSSSCCEEEE
T ss_pred cCCCCEEEECC-CCh--------hhhhHHHHHhhcCCcEEEE
Confidence 25799988432 210 1235667788999999864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=82.53 E-value=6.6 Score=36.47 Aligned_cols=106 Identities=19% Similarity=0.090 Sum_probs=50.3
Q ss_pred CCCCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
++.+|.+||+| .| +++..+.......+|..+|+|++.++- +.+.-.... ...++++..+| .+ .-+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~------~~~~~~i~~~~-~~----a~~~ 74 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP------FMGQMSLYAGD-YS----DVKD 74 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC------CTTCEEEC--C-GG----GGTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH------hcCCeEEEECC-HH----HhCC
Confidence 35789999986 22 333333332122489999999876552 333221111 11355565444 22 1356
Q ss_pred ccEEEEcCCCCCCCCCC------cch----HHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQ------LEE----VATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~------l~t----~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
-|+|++-+..+.. |.. ..+ .+..+.+.+. +|++++++ +.+
T Consensus 75 aDvVii~~g~p~k-~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv-~tN 124 (318)
T 1y6j_A 75 CDVIVVTAGANRK-PGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV-VSN 124 (318)
T ss_dssp CSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE-CSS
T ss_pred CCEEEEcCCCCCC-CCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEE-ecC
Confidence 8999986533221 111 111 2334444444 79998775 433
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.52 E-value=6.8 Score=35.66 Aligned_cols=92 Identities=9% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCcc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~y 217 (345)
..++|++||+| .|......++.+ +.+|+++|.++.-.+.+++ ++ .+.+. .+ +.+.-+..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~-~g-------------~~~~~~~~----l~~~l~~a 214 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAE-MG-------------MEPFHISK----AAQELRDV 214 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TT-------------SEEEEGGG----HHHHTTTC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-CC-------------CeecChhh----HHHHhcCC
Confidence 56899999987 233222233334 4699999999876554443 22 12221 12 22223579
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++-+ |.++...+.+ +.++|++++ +|+....
T Consensus 215 DvVi~~~------p~~~i~~~~l----~~mk~~~~l-in~ar~~ 247 (293)
T 3d4o_A 215 DVCINTI------PALVVTANVL----AEMPSHTFV-IDLASKP 247 (293)
T ss_dssp SEEEECC------SSCCBCHHHH----HHSCTTCEE-EECSSTT
T ss_pred CEEEECC------ChHHhCHHHH----HhcCCCCEE-EEecCCC
Confidence 9999843 3345555443 357777655 6887543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=82.47 E-value=4.5 Score=39.53 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC-------CCCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT-------ATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~-------~~~~rv~v~~gDa~~~l~ 211 (345)
..+.-+||+| |..++..+.+. +.+|+++|+|++.++..++-- .+-.+... ....+++.- .|
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~-~pi~epgl~~ll~~~~~~g~l~~t-td------ 80 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQ-ISIEEPGLQEVYEEVLSSGKLKVS-TT------ 80 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEE-SS------
T ss_pred CCccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHhhcccCceEEe-Cc------
Confidence 4578899999 44566666653 579999999999998766531 11100000 001233322 22
Q ss_pred cCCCcccEEEEcCCCCCCC----CCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 212 DASGRYAGIVVDLFSEGKV----LPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~----p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.+.-|+||+-+.++... .+.+ +-.+..+.+.+.|++|- ++++..+.+.
T Consensus 81 --~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~-iVV~~STV~p 133 (431)
T 3ojo_A 81 --PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGN-TIIVESTIAP 133 (431)
T ss_dssp --CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTE-EEEECSCCCT
T ss_pred --hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCC-EEEEecCCCh
Confidence 23589999977665321 0112 22344567888888875 4456555554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=82.39 E-value=11 Score=34.30 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHH
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILID 178 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~ 178 (345)
+.+|.+||+| |+.++..+.......+|+.+|++++..+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~ 46 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 46 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHH
Confidence 4689999997 3344444444211128999999997665
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.06 E-value=2.9 Score=38.37 Aligned_cols=98 Identities=8% Similarity=0.122 Sum_probs=56.6
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccccCCCcc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEI--DEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSEDASGRY 217 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEi--dp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~~~~~y 217 (345)
+|.+||+| |+.++..+.+. +.+|++++. +++.++..++........ ..-+++++... |..+ .-+..
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~----~~~~~ 72 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLG---VKLNGVEIFWPEQLEK----CLENA 72 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTT---BCCCSEEEECGGGHHH----HHTTC
T ss_pred EEEEECcCHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHhCcCcccC---ccccceEEecHHhHHH----HHhcC
Confidence 68999998 45666666654 468999999 998877665532101000 00012222210 2111 12468
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+||+-+.. . ...+.++.+.. |+++.+++ .+.
T Consensus 73 D~vi~~v~~------~-~~~~v~~~i~~-l~~~~~vv-~~~ 104 (335)
T 1txg_A 73 EVVLLGVST------D-GVLPVMSRILP-YLKDQYIV-LIS 104 (335)
T ss_dssp SEEEECSCG------G-GHHHHHHHHTT-TCCSCEEE-ECC
T ss_pred CEEEEcCCh------H-HHHHHHHHHhc-CCCCCEEE-EEc
Confidence 999985422 2 45778888888 88876554 443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=81.98 E-value=13 Score=34.08 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=50.9
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+| |.+++..+.......+|..+|+|++.++. +.+.-.... .....++..+|. + .-+..|+
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~------~~~~~~i~~~~~-~----a~~~aDv 70 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAP------VSHGTRVWHGGH-S----ELADAQV 70 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCC------TTSCCEEEEECG-G----GGTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhh------hcCCeEEEECCH-H----HhCCCCE
Confidence 68999987 33444444432112389999999986653 333221111 012344443442 2 1256899
Q ss_pred EEEcCCCCCCCC---CCc--ch----HHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVL---PQL--EE----VATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p---~~l--~t----~ef~~~~~~~L~pgGvlvv 255 (345)
|++-+..+...- ..+ .+ .+.++.+.+. .|++++++
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~ 114 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV 114 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 998653221100 001 12 4455556655 69998764
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.91 E-value=5.8 Score=36.36 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|.+||+| |..+++.+.+. +.+|+++|.+++-.+.+.+. +. + ...|..+.+ +..|
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-g~-------------~-~~~~~~e~~----~~aD 67 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSPGKAAALVAA-GA-------------H-LCESVKAAL----SASP 67 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH-TC-------------E-ECSSHHHHH----HHSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC-CC-------------e-ecCCHHHHH----hcCC
Confidence 4689999998 56677777653 46899999999988776553 21 1 112333322 3479
Q ss_pred EEEEcCCCCCCCCCCcchHHHHH--HHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWL--KLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~--~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+-+.++ ....+.+. .+.. +++ |.+++++.+...
T Consensus 68 vVi~~vp~~------~~~~~v~~~~~l~~-~~~-g~ivid~st~~~ 105 (306)
T 3l6d_A 68 ATIFVLLDN------HATHEVLGMPGVAR-ALA-HRTIVDYTTNAQ 105 (306)
T ss_dssp EEEECCSSH------HHHHHHHTSTTHHH-HTT-TCEEEECCCCCT
T ss_pred EEEEEeCCH------HHHHHHhcccchhh-ccC-CCEEEECCCCCH
Confidence 999854332 12233343 3332 444 556678876655
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=81.83 E-value=1.3 Score=41.33 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=52.4
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-----cccccccccC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-----GDVFSPSEDA 213 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-----gDa~~~l~~~ 213 (345)
..+|++||+| |+.++..|.+. +.+|+.++.++. .+..++. ++.. ..+..+... .|...
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~~~-~~~~~~~-g~~~------~~~~~~~~~~~~~~~~~~~----- 67 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARGAT-LQALQTA-GLRL------TEDGATHTLPVRATHDAAA----- 67 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCHHH-HHHHHHT-CEEE------EETTEEEEECCEEESCHHH-----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEEChHH-HHHHHHC-CCEE------ecCCCeEEEeeeEECCHHH-----
Confidence 3589999998 55666666653 468999998644 4433332 2110 011111111 11111
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
-+.+|+||+-+ +. ....+.++.++..++|+.+++.
T Consensus 68 ~~~~D~Vilav------k~-~~~~~~~~~l~~~l~~~~~iv~ 102 (335)
T 3ghy_A 68 LGEQDVVIVAV------KA-PALESVAAGIAPLIGPGTCVVV 102 (335)
T ss_dssp HCCCSEEEECC------CH-HHHHHHHGGGSSSCCTTCEEEE
T ss_pred cCCCCEEEEeC------Cc-hhHHHHHHHHHhhCCCCCEEEE
Confidence 25699999843 22 2445777777788888776653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=81.67 E-value=5 Score=35.56 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=51.3
Q ss_pred HHHhhcccc--CCCCCEEEEeecccH--HHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE
Q 038076 130 DEFVSLPAI--VPNGPIAIYGLGGGT--AAHLMLDLWPSLKLEGWE--IDEILIDKVRDYFGLSDLEKPTATGGVLQVHI 203 (345)
Q Consensus 130 ~~~~~l~~~--~~p~~VLiIG~G~G~--~~~~l~~~~p~~~v~~VE--idp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~ 203 (345)
..|..+|.+ ...++||++|+|.=. -++.|++. +.+|++|+ +++++.+++.+ .+++++.
T Consensus 18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~l~~~--------------~~i~~i~ 81 (223)
T 3dfz_A 18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTVSAEINEWEAK--------------GQLRVKR 81 (223)
T ss_dssp ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSCCHHHHHHHHT--------------TSCEEEC
T ss_pred cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHc--------------CCcEEEE
Confidence 456667754 468999999988322 22334332 57888885 45566555542 2355554
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 204 GDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 204 gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++ |-...-..+|+||....+. +.=..+...-+ .|++ +|+...+.
T Consensus 82 ~~---~~~~dL~~adLVIaAT~d~----------~~N~~I~~~ak-~gi~-VNvvD~p~ 125 (223)
T 3dfz_A 82 KK---VGEEDLLNVFFIVVATNDQ----------AVNKFVKQHIK-NDQL-VNMASSFS 125 (223)
T ss_dssp SC---CCGGGSSSCSEEEECCCCT----------HHHHHHHHHSC-TTCE-EEC-----
T ss_pred CC---CCHhHhCCCCEEEECCCCH----------HHHHHHHHHHh-CCCE-EEEeCCcc
Confidence 33 3223335799999742221 12223333334 6887 57665543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=81.54 E-value=6.8 Score=38.75 Aligned_cols=113 Identities=23% Similarity=0.292 Sum_probs=63.9
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCC-EEEEEECCHH----HHHHHHHhcCCCCC--CCCCC--------CCCcEEEE
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSL-KLEGWEIDEI----LIDKVRDYFGLSDL--EKPTA--------TGGVLQVH 202 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~-~v~~VEidp~----vi~~A~~~f~~~~~--~~~~~--------~~~rv~v~ 202 (345)
+..+|.+||+| |..++..+.+. |+. +|+++|+|++ .++..++.- .+. ..... ...+++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~~~~~kv~~l~~g~--~~i~~~e~gl~~l~~~~~~~g~l~~- 92 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSKSSGYKIEMLNRGE--SPLKGEEPGLEELIGKVVKAGKFEC- 92 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCTTTTTHHHHHTTTC--CCSSCCGGGHHHHHHHHHHTTCEEE-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChhHhHHHHHHHHhcC--CCccccCCCHHHHHHhhcccCCeEE-
Confidence 34689999999 44555555553 466 9999999999 777655421 110 00000 0233433
Q ss_pred EcccccccccCCCcccEEEEcCCCCCCCC----CCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 203 IGDVFSPSEDASGRYAGIVVDLFSEGKVL----PQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 203 ~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p----~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..| .+- -+..|+||+-+.++...- +.+ +-.+..+.+.+.|++|-++ ++..+.+.
T Consensus 93 ttd-~ea----~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~p 151 (478)
T 3g79_A 93 TPD-FSR----ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLV-VLESTITP 151 (478)
T ss_dssp ESC-GGG----GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEE-EECSCCCT
T ss_pred eCc-HHH----HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEE-EEeCCCCh
Confidence 233 222 245799999776653211 122 2234567788889887654 56655544
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=81.46 E-value=2.2 Score=43.07 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCcccEEEEcCCCCCCCCCCcc--------hHHH-HHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHH
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLE--------EVAT-WLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNS 284 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~--------t~ef-~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~ 284 (345)
..+||+||+|+-.+.. .|-| .... -....++|+|||.+++-..+.-. +..+.
T Consensus 219 ~~ryDlvfvn~~t~yr--~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyAD-----------------r~sE~ 279 (670)
T 4gua_A 219 QARYDLVFINIGTKYR--NHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYAD-----------------RNSED 279 (670)
T ss_dssp CCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCS-----------------HHHHH
T ss_pred CCcccEEEEecCCCcc--cchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccc-----------------cchHH
Confidence 4699999999866421 2212 1112 23567789999999988877664 56789
Q ss_pred HHHHHHHHCCCCEEEE
Q 038076 285 AIRALSEAFPGKVSWK 300 (345)
Q Consensus 285 ~~~~l~~~F~~~v~~~ 300 (345)
++.++.+-|. .+.+.
T Consensus 280 vv~alaRkF~-~~rv~ 294 (670)
T 4gua_A 280 VVTALARKFV-RVSAA 294 (670)
T ss_dssp HHHHHHHTEE-EEEEE
T ss_pred HHHHHHhhee-eeeee
Confidence 9999999998 55543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=8.3 Score=33.96 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=47.8
Q ss_pred CCCCEEEEeeccc-----HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---
Q 038076 140 PNGPIAIYGLGGG-----TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--- 211 (345)
Q Consensus 140 ~p~~VLiIG~G~G-----~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--- 211 (345)
..+++|+.|++++ .+++.+++ .+.+|.+++.++...+..++..... ...++.++..|..+.-.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE--AGARLIFTYAGERLEKSVHELAGTL-------DRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHTS-------SSCCCEEEECCCSSSHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEecCchHHHHHHHHHHHhc-------CCCCceEEeCCCCCHHHHHH
Confidence 3578999997633 24445544 3678999998876555544433211 13478899999876411
Q ss_pred ---c---CCCcccEEEEcCC
Q 038076 212 ---D---ASGRYAGIVVDLF 225 (345)
Q Consensus 212 ---~---~~~~yD~Ii~D~f 225 (345)
. ..++.|+++..+-
T Consensus 77 ~~~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHhCCeeEEEEccc
Confidence 0 1247899998653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.14 E-value=3.8 Score=37.18 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=54.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhC--C-C-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLW--P-S-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DA 213 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~--p-~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~ 213 (345)
.+|.+||+| |+.++..|.+.. + + .+|++++. ++.++..++..+..-. ..+... ..... .... ..
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~-----~~~~~~-~~~~~-~~~~~~~~ 80 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVV-----TPSRDF-LARPT-CVTDNPAE 80 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEE-----CSSCEE-EECCS-EEESCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEE-----eCCCCe-EEecc-eEecCccc
Confidence 579999999 556666666530 1 4 68999998 7666555441121100 000000 00000 0000 01
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
-+.+|+||+-+... ...+.++.++..++++.++ +.+.
T Consensus 81 ~~~~D~vil~vk~~-------~~~~v~~~i~~~l~~~~~i-v~~~ 117 (317)
T 2qyt_A 81 VGTVDYILFCTKDY-------DMERGVAEIRPMIGQNTKI-LPLL 117 (317)
T ss_dssp HCCEEEEEECCSSS-------CHHHHHHHHGGGEEEEEEE-EECS
T ss_pred cCCCCEEEEecCcc-------cHHHHHHHHHhhcCCCCEE-EEcc
Confidence 25799999854332 2467888888888876654 4443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=1.5 Score=40.55 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=56.3
Q ss_pred CEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cc-cccccc-CCCcc
Q 038076 143 PIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DV-FSPSED-ASGRY 217 (345)
Q Consensus 143 ~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da-~~~l~~-~~~~y 217 (345)
+||++|+ |.|..+..+++.. +.+|.+++.+++-.+.+++ ++.. .++.. |. .+.++. ....+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~-lGa~------------~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ-LGAS------------EVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH-HTCS------------EEEEHHHHCSSCCCSSCCCCE
T ss_pred eEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCc------------EEEECCCchHHHHHHhhcCCc
Confidence 8999996 4566666766654 4689999999888888877 4422 11111 11 111221 23579
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|+- ... .+.++.+.+.|+++|.++.
T Consensus 219 d~vid-~~g----------~~~~~~~~~~l~~~G~iv~ 245 (330)
T 1tt7_A 219 QGAVD-PVG----------GKQLASLLSKIQYGGSVAV 245 (330)
T ss_dssp EEEEE-SCC----------THHHHHHHTTEEEEEEEEE
T ss_pred cEEEE-CCc----------HHHHHHHHHhhcCCCEEEE
Confidence 98874 221 1357788899999999874
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=5.7 Score=41.26 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=64.0
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCCC-----CCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPTA-----TGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~~-----~~~rv~v~~gDa~~ 208 (345)
.++|.+||+| |+.++..+.+. +.+|+++|++++.++.++++.. +........ ...+++.. .|. +
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~-~ 389 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LSY-G 389 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SSS-T
T ss_pred CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CCH-H
Confidence 4689999998 55666666653 5789999999998887644321 000000000 00123322 232 2
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
- -+.-|+||.-++. .+ ...+.++.+...++|+-+++.|..+.
T Consensus 390 ~----~~~aDlVIeaV~e------~~~vk~~v~~~l~~~~~~~~IlasntStl 432 (715)
T 1wdk_A 390 D----FGNVDLVVEAVVE------NPKVKQAVLAEVENHVREDAILASNTSTI 432 (715)
T ss_dssp T----GGGCSEEEECCCS------CHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred H----HCCCCEEEEcCCC------CHHHHHHHHHHHHhhCCCCeEEEeCCCCC
Confidence 1 2467999985533 22 24578888999999998887776543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=80.44 E-value=2.5 Score=37.54 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=26.9
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHH
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEIL 176 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~v 176 (345)
..++|.+||+| |+.++..+.+. +.+|++++.+++-
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~~ 54 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPKA 54 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChhh
Confidence 35789999988 55677676653 5689999999985
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.43 E-value=3.9 Score=37.59 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=56.2
Q ss_pred CCCCCEEEEe-e-cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCCC
Q 038076 139 VPNGPIAIYG-L-GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG-~-G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~~ 215 (345)
.+..+||++| + |.|..+.++++.. +.+|.++.- ++-.+.++++ +.. .++..+-.+ +. ..-+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~-~~~~~~~~~l-Ga~------------~~i~~~~~~~~~-~~~~ 214 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTAS-KRNHAFLKAL-GAE------------QCINYHEEDFLL-AIST 214 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEEC-HHHHHHHHHH-TCS------------EEEETTTSCHHH-HCCS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEec-cchHHHHHHc-CCC------------EEEeCCCcchhh-hhcc
Confidence 4567899997 3 4577777888765 468888875 4447888774 422 122221112 21 1225
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+- ... .+.++.+.+.|+++|.++.
T Consensus 215 g~D~v~d-~~g----------~~~~~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 215 PVDAVID-LVG----------GDVGIQSIDCLKETGCIVS 243 (321)
T ss_dssp CEEEEEE-SSC----------HHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEE-CCC----------cHHHHHHHHhccCCCEEEE
Confidence 7999884 211 1234788899999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 345 | ||||
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 3e-17 | |
| d1uira_ | 312 | c.66.1.17 (A:) Spermidine synthase {Thermus thermo | 3e-16 | |
| d1xj5a_ | 290 | c.66.1.17 (A:) Spermidine synthase {Thale cress (A | 7e-15 | |
| d1inla_ | 295 | c.66.1.17 (A:) Spermidine synthase {Thermotoga mar | 5e-12 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 1e-10 | |
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 2e-10 | |
| d1iy9a_ | 274 | c.66.1.17 (A:) Spermidine synthase {Bacillus subti | 2e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.004 |
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 78.3 bits (192), Expect = 3e-17
Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 17/224 (7%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+ + SKY I + +T R+L LD T + + SY + V +
Sbjct: 18 KKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVT-------LGERSYHEPLVHPAMLAH 70
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV 198
P + + G G G +L ++ EIDE +I +D + + G
Sbjct: 71 PKPKRVLVIGGGDGGTVREVLQHDVD-EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGK 129
Query: 199 L---QVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255
++ IGD F ++ + + I+ D L + + D L G ++
Sbjct: 130 HEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188
Query: 256 NCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW 299
G + + K M V+ + ++
Sbjct: 189 QAGSVY--LFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAF 230
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Score = 76.0 bits (186), Expect = 3e-16
Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 16/224 (7%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+V+ + ++ + D + ++ ++L+LD + Y + V +
Sbjct: 23 RVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTE-------RDEYIYHETLVHPAMLTH 75
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV 198
P + I G G G +L K +ID L++ + + + +
Sbjct: 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHM--PEWHQGAFDDPR 133
Query: 199 LQVHIGDVFSPSEDASGRYAGIVVDL---FSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255
+ I D + E RY +++DL E L V + +K L P G +
Sbjct: 134 AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193
Query: 256 NCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW 299
G I + + + + + + + F +
Sbjct: 194 QTGMILLTHHRVHPVVHRT-VREAFRYVRSYKNHIPGFFLNFGF 236
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.8 bits (175), Expect = 7e-15
Identities = 32/181 (17%), Positives = 68/181 (37%), Gaps = 14/181 (7%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+V+ +S Y D+++ + ++L+LD + + +Y + LP
Sbjct: 26 KVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTE-------RDECAYQEMITHLPLCSI 78
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV 198
P + + G G G + +++ EID++++D + +F +
Sbjct: 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-- 136
Query: 199 LQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257
+ IGD + ++ A G Y ++VD +L E + + L P G
Sbjct: 137 -NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195
Query: 258 G 258
Sbjct: 196 E 196
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Score = 63.2 bits (153), Expect = 5e-12
Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 14/180 (7%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+V+ + +S I I + P + LD K Y + +P +
Sbjct: 35 RVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTE-------KDEFMYHEMLAHVPMFLH 87
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV 198
P + I G G G +L K E+D ++I+ R Y +
Sbjct: 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPR--- 144
Query: 199 LQVHIGDVFSPSEDASGRYAGIVVDLF-SEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257
++ I + + I++D L + D L +G F
Sbjct: 145 AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 1e-10
Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 15/217 (6%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLP--AI 138
Q++ RS+Y DI++ + +L+LD + SY + +LP +
Sbjct: 24 QLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTE-------RDEFSYQEMIANLPLCSH 76
Query: 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV 198
+ I G G G ++ + EIDE +I + + + ++
Sbjct: 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-- 134
Query: 199 LQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258
+H+GD F + + I+ D L + + + +K L +G
Sbjct: 135 -TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193
Query: 259 GIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295
+ + ++ + +P
Sbjct: 194 CQW--LHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPS 228
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 59.0 bits (142), Expect = 2e-10
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 19/219 (8%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+V+ +SKY D+++ ++ +L+LD + SY + LP
Sbjct: 52 KVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATE-------RDEFSYQEMLAHLPMFAH 104
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD--LEKPTATG 196
P + I G G G +L K+ EIDE++ID + + P
Sbjct: 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPK--- 161
Query: 197 GVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256
L + GD F ++ + I+ D L + + L+D L +G
Sbjct: 162 --LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219
Query: 257 CGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295
+ + A ++ + +++ +P
Sbjct: 220 GESVW--LHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPS 256
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Score = 55.6 bits (133), Expect = 2e-09
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 17/182 (9%)
Query: 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAIVP 140
+ + ++++ + +V+T + ML LD K Y + +P
Sbjct: 21 KTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSE-------KDEFVYHEMVAHVPLFTH 73
Query: 141 NGP--IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD--LEKPTATG 196
P + + G G G +L K +ID +I+ + + L+ P
Sbjct: 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPR--- 130
Query: 197 GVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256
+ V + D F + +Y I+VD L + + L +G F+
Sbjct: 131 --VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188
Query: 257 CG 258
Sbjct: 189 TD 190
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.004
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 15/135 (11%)
Query: 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILID----KVRDYFGLSDLEKP 192
I P + G G G + + ++ +E+ + D + + L
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 193 TATGGVLQVHIGDVFS-PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNG 251
+ D+ + S + + +D+ + LP L G
Sbjct: 156 EEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPH---------LKHGG 206
Query: 252 RFMVNCGGIDGVSDM 266
V I V ++
Sbjct: 207 VCAVYVVNITQVIEL 221
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 100.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 100.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 100.0 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 100.0 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.98 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.48 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.45 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.44 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.43 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.43 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.41 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.41 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.38 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.38 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.34 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.34 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.34 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.34 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.32 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.3 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.3 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.3 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.29 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.29 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.28 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.28 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.27 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.26 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.26 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.25 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.24 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.24 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.24 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.23 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.23 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.17 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.16 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.15 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.14 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.14 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.14 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.14 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.13 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.12 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.11 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.11 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.11 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.09 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.05 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.05 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.01 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.98 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.98 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.97 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.94 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.93 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.88 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.79 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.79 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.76 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.76 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.75 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.71 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.63 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.56 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.53 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.51 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.49 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.42 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.4 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.36 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.24 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.2 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.14 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.08 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.04 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.04 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.02 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.01 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.01 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.99 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.97 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.87 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.85 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.76 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.7 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.29 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.28 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.28 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.16 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.06 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.97 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.93 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.88 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.87 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.78 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.68 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.5 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.42 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.38 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.23 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.01 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.81 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.7 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.67 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.66 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.63 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.53 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.49 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.22 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.81 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.79 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 94.53 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.29 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.75 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.58 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.52 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.16 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.03 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.49 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.93 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.39 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.52 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.42 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.06 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 88.47 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.46 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 88.18 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.08 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.29 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 86.99 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 86.84 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.54 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 86.38 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 86.37 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 86.1 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 85.33 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 84.44 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 83.18 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.08 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 82.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 82.85 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 82.83 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 82.76 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.28 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 82.02 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 81.28 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 80.76 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 80.05 |
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-33 Score=261.92 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=165.4
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|.|+++.. .|+|.+|+.. |. .. .-...|++.|++.|.. ..|++||+||+|+|.++++
T Consensus 23 ~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~-q~-~~-----~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~ 95 (285)
T d2o07a1 23 EQLLHHRRSRYQDILVFRSKTYGNVLVLDGVI-QC-TE-----RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLRE 95 (285)
T ss_dssp EEEEEEEECSSSEEEEEEESSSCEEEEETTEE-EE-ET-----TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHH
T ss_pred eeEEEeCCCCCcEEEEEEeCCCCeEEEECCcE-EE-ec-----CCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHH
Confidence 469999999999999999977 6999999864 22 21 1235688777766654 6789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++|||||+|+++|++||.... ....+||++++++||+.|++..+++||+||+|++++.+.+.+|+|.
T Consensus 96 ~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~---~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~ 172 (285)
T d2o07a1 96 VVKHPSVESVVQCEIDEDVIQVSKKFLPGMA---IGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKE 172 (285)
T ss_dssp HTTCTTCCEEEEEESCHHHHHHHHHHCHHHH---GGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------C
T ss_pred HHHcCCcceeeeccCCHHHHHHHHhhchhhc---cccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccH
Confidence 9988778999999999999999999984211 1245899999999999999988899999999999987778899999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCce-EEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGEN-FLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n-~v~~a 314 (345)
|||+.|+++|+|||++++|+.+...+ ....+.+.++++++|+ +|..+. +|.-.+++ .++++
T Consensus 173 eF~~~~~~~L~~~Gi~v~q~~s~~~~---------------~~~~~~~~~tl~~~F~-~v~~y~~~vP~~~~g~w~f~~a 236 (285)
T d2o07a1 173 SYYQLMKTALKEDGVLCCQGECQWLH---------------LDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC 236 (285)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECTTTC---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEeccchhhh---------------HHHHHHHHHHHHhcCC-eeeEEeeeeeecCCCCeEEEEE
Confidence 99999999999999999999876652 2568899999999999 565444 45544444 46778
Q ss_pred CCCC
Q 038076 315 GLLP 318 (345)
Q Consensus 315 ~~~p 318 (345)
++.|
T Consensus 237 Sk~p 240 (285)
T d2o07a1 237 SKNP 240 (285)
T ss_dssp ESST
T ss_pred ECCc
Confidence 7766
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.4e-32 Score=255.88 Aligned_cols=212 Identities=17% Similarity=0.175 Sum_probs=174.1
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||.|+|++++. .|+|.+|+.. |.+ + .-+..|++.|++.|.. .+|++||+||+|+|+.+++
T Consensus 20 ~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~-q~~----~--~de~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~ 92 (274)
T d1iy9a_ 20 NKTLHTEQTEFQHLEMVETEEFGNMLFLDGMV-MTS----E--KDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIRE 92 (274)
T ss_dssp EEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEE----T--TTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHH
T ss_pred eeEEEeCcCCCcEEEEEEcCCcCeEEEECCce-eee----c--CchhhchhhhccchhhccCCcceEEecCCCCcHHHHH
Confidence 469999999999999999987 6999999864 222 1 2245688877766653 6789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++|||||+|+++|++||.... ...++||++++++||+.|+++.+++||+|++|++++.+.+.+|+|.
T Consensus 93 ~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~---~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~ 169 (274)
T d1iy9a_ 93 ILKHPSVKKATLVDIDGKVIEYSKKFLPSIA---GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTK 169 (274)
T ss_dssp HTTCTTCSEEEEEESCHHHHHHHHHHCHHHH---TTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTT
T ss_pred HHhcCCcceEEEecCCHHHHHHHHHhChhhc---ccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccH
Confidence 9988778999999999999999999994321 1245899999999999999998999999999999988778889999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCC-CceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERN-GENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~-~~n~v~~a 314 (345)
|||+.|+++|+|||++++|..++... ....+.+.++|+++|+ .|..+. +|.-. +.+.++++
T Consensus 170 eFy~~~~~~L~~~Gv~v~q~~s~~~~---------------~~~~~~i~~tl~~~F~-~v~~y~~~vPsy~~g~w~f~~a 233 (274)
T d1iy9a_ 170 GFYAGIAKALKEDGIFVAQTDNPWFT---------------PELITNVQRDVKEIFP-ITKLYTANIPTYPSGLWTFTIG 233 (274)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHTTCS-EEEEEEECCTTSGGGCEEEEEE
T ss_pred HHHHHHHhhcCCCceEEEecCCcccc---------------HHHHHHHHHhhhhhcC-ceEEEEEEeeecCCCceEEEEE
Confidence 99999999999999999998776542 2567899999999999 565454 45432 34567777
Q ss_pred CCCC
Q 038076 315 GLLP 318 (345)
Q Consensus 315 ~~~p 318 (345)
++..
T Consensus 234 S~~~ 237 (274)
T d1iy9a_ 234 SKKY 237 (274)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 7664
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=6.5e-33 Score=261.60 Aligned_cols=212 Identities=18% Similarity=0.200 Sum_probs=162.8
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|.|+++.. .|+|++|+.. +.... -++.|++.|++.|.+ ..|++||+||+|+|+++++
T Consensus 51 ~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~--q~~e~-----de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~re 123 (312)
T d2b2ca1 51 KKVLFHEKSKYQDVLVFESTTYGNVLVLDGIV--QATER-----DEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILRE 123 (312)
T ss_dssp EEEEEEEECSSCEEEEEEETTTEEEEEETTEE--EEESS-----SSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHH
T ss_pred EEEEEecCCCCeEEEEEEcCCcCCEEEECCce--eeecc-----cHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHH
Confidence 469999999999999999977 6999999864 22211 235688888777753 6789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..+|++|||||+|+++|++||.... ...++||++++++||++|++..+++||+||+|++++.+.+..|+|.
T Consensus 124 llk~~~v~~v~~VEID~~Vv~~a~~~~~~~~---~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~ 200 (312)
T d2b2ca1 124 VLKHESVEKVTMCEIDEMVIDVAKKFLPGMS---CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQ 200 (312)
T ss_dssp HTTCTTCCEEEEECSCHHHHHHHHHHCTTTS---GGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC------------
T ss_pred HHHcCCcceEEEEcccHHHHHHHHhhchhhc---cccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhH
Confidence 9988777899999999999999999996432 2357899999999999999988999999999999987778889999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceE-EEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENF-LALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~-v~~a 314 (345)
|||+.|+++|+|||++++|..+...+ ......+.++++++|+ .|..+. +|.-.++++ ++++
T Consensus 201 eFy~~~~~~L~~~Gi~v~q~~s~~~~---------------~~~~~~i~~~l~~vF~-~v~~y~~~vPtyp~G~w~f~~a 264 (312)
T d2b2ca1 201 SYYELLRDALKEDGILSSQGESVWLH---------------LPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLIC 264 (312)
T ss_dssp -HHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEecCChHHh---------------HHHHHHHHHHhhhccc-eEEEeeeccCCcCCccceeeEE
Confidence 99999999999999999998766542 2568899999999999 665454 454334444 6677
Q ss_pred CCCC
Q 038076 315 GLLP 318 (345)
Q Consensus 315 ~~~p 318 (345)
++.+
T Consensus 265 Sk~~ 268 (312)
T d2b2ca1 265 AKNA 268 (312)
T ss_dssp ESST
T ss_pred ECCC
Confidence 6543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.7e-33 Score=260.02 Aligned_cols=213 Identities=17% Similarity=0.227 Sum_probs=173.5
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|+|+++.. .|+|.+|+.. |.+ ..-++.|++.|++.|.. .+|++||+||+|+|+++++
T Consensus 25 ~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~-q~~------e~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~ 97 (290)
T d1xj5a_ 25 EKVLFQGKSDYQDVIVFQSATYGKVLVLDGVI-QLT------ERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE 97 (290)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCEEEEETTEE-EEE------TTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHH
T ss_pred eeEEEeCCCCCeEEEEEEeCCCCeEEEECCeE-eee------ccchhHHHHHHhhHHHhhCCCCcceEEecCCchHHHHH
Confidence 469999999999999999976 6999999964 222 12245788878777754 5789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcch
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
++++.|..+|++|||||+|+++|++||.... ...+++|++++++||++|+++. +++||+||+|++++..++.+|+|
T Consensus 98 ~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~---~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t 174 (290)
T d1xj5a_ 98 VARHASIEQIDMCEIDKMVVDVSKQFFPDVA---IGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFE 174 (290)
T ss_dssp HTTCTTCCEEEEEESCHHHHHHHHHHCHHHH---GGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGS
T ss_pred HHhcccceeeEEecCCHHHHHHHHHhchhhh---ccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCC
Confidence 9988777899999999999999999995321 1246899999999999999765 46899999999998777888999
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCCCce-EEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERNGEN-FLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~~~n-~v~~ 313 (345)
.|||+.|+++|+|||++++|+.+...+ ...++.++++++++|++.+..+ .+|.-.++. .+++
T Consensus 175 ~eF~~~~~~~L~~~Gi~v~q~~s~~~~---------------~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~ 239 (290)
T d1xj5a_ 175 KPFFQSVARALRPGGVVCTQAESLWLH---------------MDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML 239 (290)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCCTTTC---------------HHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCcHHH---------------HHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEE
Confidence 999999999999999999999876642 2568899999999999665433 366543344 4666
Q ss_pred eCCCC
Q 038076 314 TGLLP 318 (345)
Q Consensus 314 a~~~p 318 (345)
+++.+
T Consensus 240 as~~~ 244 (290)
T d1xj5a_ 240 CSTEG 244 (290)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 66543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.1e-32 Score=255.10 Aligned_cols=213 Identities=18% Similarity=0.123 Sum_probs=166.5
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|.|+|+.. .|+|.+|+.. |++ . ..+..|++.|+..|. ..+|++||+||+|+|..+++
T Consensus 17 ~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~-q~~-~-----~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~ 89 (276)
T d1mjfa_ 17 KKKIYEKLSKYQKIEVYETEGFGRLLALDGTV-QLV-T-----LGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVRE 89 (276)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCEEEEETTEE-EEE-T-----TTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHH
T ss_pred eeEEEEecCCCeEEEEEEeCCCCeEEEECCce-eee-c-----cchhHHHHHhhcchhhcCCCCceEEEecCCchHHHHH
Confidence 469999999999999999876 6999999864 322 1 224579888876654 36789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC---CCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCc
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE---KPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQL 234 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~---~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l 234 (345)
++++ +..+|++|||||+|+++|++||+..... .....+||++++++||+.|+++ .++||+||+|++++.+.+..|
T Consensus 90 ~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~~~~~~~L 167 (276)
T d1mjfa_ 90 VLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVL 167 (276)
T ss_dssp HTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----T
T ss_pred HHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCCCCCcccc
Confidence 9875 5679999999999999999999764310 0113589999999999999975 678999999999987778889
Q ss_pred chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEe--cCCCCceEEE
Q 038076 235 EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRM--PERNGENFLA 312 (345)
Q Consensus 235 ~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~--~~~~~~n~v~ 312 (345)
+|.|||+.|+++|+|||++++|+.+...+ ...+..++++|+++|+ +|..+.+ |.-.+.+.++
T Consensus 168 ~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~---------------~~~~~~~~~tl~~~F~-~v~~y~~~vP~y~~~w~f~ 231 (276)
T d1mjfa_ 168 FSEEFYRYVYDALNNPGIYVTQAGSVYLF---------------TDELISAYKEMKKVFD-RVYYYSFPVIGYASPWAFL 231 (276)
T ss_dssp TSHHHHHHHHHHEEEEEEEEEEEEETTTS---------------HHHHHHHHHHHHHHCS-EEEEEEECCTTSSSSEEEE
T ss_pred cCHHHHHhhHhhcCCCceEEEecCCcchh---------------HHHHHHHHHHHHhhCC-eeEEEEecCcCCCCceEEE
Confidence 99999999999999999999998766542 1467889999999999 6766654 4433444556
Q ss_pred EeCCCC
Q 038076 313 LTGLLP 318 (345)
Q Consensus 313 ~a~~~p 318 (345)
++++.|
T Consensus 232 ~as~~~ 237 (276)
T d1mjfa_ 232 VGVKGD 237 (276)
T ss_dssp EEEESS
T ss_pred EEeCCC
Confidence 665443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-32 Score=258.15 Aligned_cols=213 Identities=16% Similarity=0.108 Sum_probs=168.0
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
-.++|++.+|+||.|.|++++. +|.|.+|+.. |. . + .-++.|++.|++.|.. ..|++||+||+|+|.+++
T Consensus 33 v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~-q~-~---~--~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r 105 (295)
T d1inla_ 33 MNRVIYSGQSDIQRIDIFENPDLGVVFALDGIT-MT-T---E--KDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR 105 (295)
T ss_dssp CSEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EE-E---T--TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHH
T ss_pred EEEEEEecCCCCcEEEEEEcCCcceEEEECCEE-EE-e---c--CchhhhhhhhcchhHhhCCCCceEEEecCCchHHHH
Confidence 3579999999999999999976 7999999964 21 1 1 1245788887777753 678999999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCC-CCCCcc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK-VLPQLE 235 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~-~p~~l~ 235 (345)
+++++.|..+|++|||||+|+++|++||.... ...++||++++++||++|+++.+++||+||+|++++.. .+..|+
T Consensus 106 ~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~---~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~ 182 (295)
T d1inla_ 106 EVLKHDSVEKAILCEVDGLVIEAARKYLKQTS---CGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLF 182 (295)
T ss_dssp HHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH---GGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CC
T ss_pred HHHhcCCCceEEEecCCHHHHHHHHHHHHhhc---ccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhc
Confidence 99998778999999999999999999995431 12468999999999999999989999999999999753 456799
Q ss_pred hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCC-ceEEE
Q 038076 236 EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNG-ENFLA 312 (345)
Q Consensus 236 t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~-~n~v~ 312 (345)
|.|||+.|+++|+|||++++|..++..+ ....+.+.++++++|+ .+..+. +|.-.+ ...++
T Consensus 183 t~efy~~~~~~L~~~Gi~v~q~~sp~~~---------------~~~~~~i~~tl~~vF~-~v~~y~~~vPtyp~G~w~f~ 246 (295)
T d1inla_ 183 TEEFYQACYDALKEDGVFSAETEDPFYD---------------IGWFKLAYRRISKVFP-ITRVYLGFMTTYPSGMWSYT 246 (295)
T ss_dssp SHHHHHHHHHHEEEEEEEEEECCCTTTT---------------HHHHHHHHHHHHHHCS-EEEEEEEECTTSTTSEEEEE
T ss_pred cHHHHHHHHhhcCCCcEEEEecCChhhh---------------hHHHHHHHHHHHhhcc-eeEEEEeeeceecCcccEEE
Confidence 9999999999999999999998876542 2568899999999999 565443 454333 44577
Q ss_pred EeCCCC
Q 038076 313 LTGLLP 318 (345)
Q Consensus 313 ~a~~~p 318 (345)
++++.+
T Consensus 247 ~aSk~~ 252 (295)
T d1inla_ 247 FASKGI 252 (295)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 777654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.1e-32 Score=261.10 Aligned_cols=215 Identities=19% Similarity=0.160 Sum_probs=171.4
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.++|++.+|+||+|.|+++.. +|+|.+|+.. |.+ . .-+..|++.|++.|.+ ..|++||+||+|+|.++++
T Consensus 22 ~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~-q~~----~--~de~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ 94 (312)
T d1uira_ 22 ERVIASGKTPFQDYFLFESKGFGKVLILDKDV-QST----E--RDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLRE 94 (312)
T ss_dssp SEEEEEEECSSCEEEEEEETTTEEEEEETTEE-EEE----T--TTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHH
T ss_pred EEEEEeCCCCCceEEEEEcCCcCcEEEECCee-eec----c--ccHHHHHHHHhhhhhhhCCCcceEEEeCCCchHHHHH
Confidence 469999999999999999987 6999999864 322 1 2245688888777643 6789999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCC---CCCCCc
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG---KVLPQL 234 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~---~~p~~l 234 (345)
++++.+..+|++|||||+|+++|++||... .+...++||++++++||++|+++.+++||+||+|++++. ..+..|
T Consensus 95 ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~--~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L 172 (312)
T d1uira_ 95 VLKHPTVEKAVMVDIDGELVEVAKRHMPEW--HQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLL 172 (312)
T ss_dssp HTTSTTCCEEEEEESCHHHHHHHHHHCHHH--HTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGG
T ss_pred HHhcCCcceEEEecCCHHHHHHHHhcCccc--ccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhh
Confidence 998877899999999999999999998421 112356899999999999999988899999999998753 235579
Q ss_pred chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEEE
Q 038076 235 EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFLA 312 (345)
Q Consensus 235 ~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v~ 312 (345)
+|.|||+.|+++|+|||++++|+.+..... ....+.+.++++++|+ +|..+. +|.-.+...++
T Consensus 173 ~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~--------------~~~~~~i~~tl~~~F~-~V~~y~~~vPs~~~~w~f~ 237 (312)
T d1uira_ 173 YTVEFYRLVKAHLNPGGVMGMQTGMILLTH--------------HRVHPVVHRTVREAFR-YVRSYKNHIPGFFLNFGFL 237 (312)
T ss_dssp SSHHHHHHHHHTEEEEEEEEEEEEEECC-----------------CHHHHHHHHHHTTCS-EEEEEEEEEGGGTEEEEEE
T ss_pred hhHHHHHHHHHhcCCCceEEEecCCcccch--------------HHHHHHHHHHHHHhCc-eEEEEEeeeCCcCCCCEeE
Confidence 999999999999999999999987654310 1456778899999999 565444 56544444577
Q ss_pred EeCCCCC
Q 038076 313 LTGLLPD 319 (345)
Q Consensus 313 ~a~~~p~ 319 (345)
++++.++
T Consensus 238 ~aS~~~~ 244 (312)
T d1uira_ 238 LASDAFD 244 (312)
T ss_dssp EEESSSC
T ss_pred EEeCCCC
Confidence 7877654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.8e-14 Score=127.48 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=88.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+.++||+||||+|..+.++++.. ..++++||+||.+++.|++++... ..+++++.+|+...... ..++|
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~f 122 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ--------THKVIPLKGLWEDVAPTLPDGHF 122 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC--------SSEEEEEESCHHHHGGGSCTTCE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhc--------ccccccccccccccccccccccc
Confidence 456799999999999999998754 468999999999999999998532 46789999998886544 56889
Q ss_pred cEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvv 255 (345)
|.|+.|.+.......+.. ..++++++++.|+|||++++
T Consensus 123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 999999877654444443 45688999999999999976
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=1.9e-13 Score=121.70 Aligned_cols=121 Identities=10% Similarity=0.050 Sum_probs=91.7
Q ss_pred hHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 127 SYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 127 ~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
++++.|.....+.+..+||+||||+|.++..+.+.. .+|++||+++.+++.|+++..... .++++++.+|+
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~-------~~~~~~~~~d~ 73 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG-------VENVRFQQGTA 73 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT-------CCSEEEEECBT
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccc-------ccccccccccc
Confidence 345555444445678899999999999999998763 689999999999999999875322 35799999999
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.+. .-.+++||+|++-..- ..++ .-.++++++++.|+|||.+++..+...
T Consensus 74 ~~~-~~~~~~fD~v~~~~~l-~~~~---d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 74 ESL-PFPDDSFDIITCRYAA-HHFS---DVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp TBC-CSCTTCEEEEEEESCG-GGCS---CHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred ccc-cccccccceeeeecee-eccc---CHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 884 4467899999983211 1122 136899999999999999888655444
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.44 E-value=4.5e-14 Score=126.62 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=84.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|..+..+.+. +.+|++||+++.|++.|++..... ..+++++.+|++++- .+++||
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~--------~~~v~~~~~d~~~~~--~~~~fD 103 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ--------GLKPRLACQDISNLN--INRKFD 103 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT--------TCCCEEECCCGGGCC--CSCCEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhcccccccc--------Cccceeeccchhhhc--cccccc
Confidence 45689999999999999999875 468999999999999999877422 357999999999873 467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++-...-..++..-....+++.++++|+|||.+++.++..
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 999721111112221233468999999999999999887643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=1.4e-13 Score=122.97 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=83.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|..+..+.+. +.+|++||+++.|++.|++.+... +.+++++.+|+.++- .+++||
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~--------~~~i~~~~~d~~~l~--~~~~fD 107 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER--------NLKIEFLQGDVLEIA--FKNEFD 107 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--------TCCCEEEESCGGGCC--CCSCEE
T ss_pred CCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccc--------cccchheehhhhhcc--cccccc
Confidence 35678999999999999998875 468999999999999999987522 457999999999863 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-. +.......-....++++++++|+|||++++....
T Consensus 108 ~I~~~~-~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 108 AVTMFF-STIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEECS-SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhhhh-hhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999721 1111111112357999999999999999987654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.3e-13 Score=122.14 Aligned_cols=116 Identities=10% Similarity=0.027 Sum_probs=89.1
Q ss_pred HHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc
Q 038076 129 WDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS 208 (345)
Q Consensus 129 ~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~ 208 (345)
++.+.....+.+..+||+||||+|..+..+.+.++ .+|++||++|.+++.|++...... .+++++++++|+.+
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g------l~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG------VSERVHFIHNDAAG 94 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT------CTTTEEEEESCCTT
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh------ccccchhhhhHHhh
Confidence 34444344456778999999999999999887654 799999999999999998764222 14689999999999
Q ss_pred ccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 209 PSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+. .+++||+|++- ++. +++ .-..+++++++.|+|||.+++...
T Consensus 95 ~~--~~~~fD~v~~~~~~~--~~~---d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 95 YV--ANEKCDVAACVGATW--IAG---GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CC--CSSCEEEEEEESCGG--GTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cc--ccCceeEEEEEehhh--ccC---CHHHHHHHHHHHcCcCcEEEEEec
Confidence 74 46889999862 211 122 126799999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=5.8e-13 Score=115.74 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=95.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+.++||+||||+|.++..+++.. .+|+++|+|+.+++.|++.+..... .+.+++++.+|..+.+ .+++|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~l-----~~~~i~~~~~d~~~~~--~~~~f 120 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDLYENV--KDRKY 120 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECSTTTTC--TTSCE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhCC-----ccceEEEEEcchhhhh--ccCCc
Confidence 3567899999999999999988764 4899999999999999987754332 2568999999998865 36899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~ 295 (345)
|+|+++..-.. ..-...++++.+.++|+|||.+++-+.... ..+.....+++.|.+
T Consensus 121 D~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-------------------~~~~~~~~l~~~f~~ 176 (194)
T d1dusa_ 121 NKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-------------------GAKSLAKYMKDVFGN 176 (194)
T ss_dssp EEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-------------------HHHHHHHHHHHHHSC
T ss_pred eEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCcC-------------------CHHHHHHHHHHhCCc
Confidence 99999642211 111345789999999999999876443221 245566678888883
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.41 E-value=4.5e-13 Score=115.78 Aligned_cols=108 Identities=18% Similarity=0.094 Sum_probs=87.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||+|.++..+++. ..+|++||+||++++.|++++..... .++++++++|+.+.+. ..+.|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl------~~~v~~~~gda~~~~~-~~~~~ 101 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGL------GDNVTLMEGDAPEALC-KIPDI 101 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC------CTTEEEEESCHHHHHT-TSCCE
T ss_pred CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCC------CcceEEEECchhhccc-ccCCc
Confidence 356789999999999999998864 46999999999999999998743321 3689999999988754 46789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|.|+++.... ...++++.+.+.|+|||.++++....+
T Consensus 102 D~v~~~~~~~-------~~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 102 DIAVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp EEEEESCCTT-------CHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred CEEEEeCccc-------cchHHHHHHHHHhCcCCEEEEEeeccc
Confidence 9999974321 346899999999999999998876433
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.41 E-value=5.1e-13 Score=117.86 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=83.8
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||+|..+..+.+. +.+|++||+++.+++.|++.+.... .++++++++|+.+. .-.+++|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~-------~~~i~~~~~d~~~l-~~~~~~f 82 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNG-------HQQVEYVQGDAEQM-PFTDERF 82 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCC-CC-CSCTTCE
T ss_pred CCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccc-------cccccccccccccc-ccccccc
Confidence 356789999999999999998876 3689999999999999998874322 46899999999884 4457899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++-..- .+++ .-..+++++.+.|+|||.+++..+.
T Consensus 83 D~v~~~~~l-~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 83 HIVTCRIAA-HHFP---NPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp EEEEEESCG-GGCS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccc-cccC---CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999974211 1122 2357899999999999998875443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=3.3e-13 Score=122.46 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=97.3
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||++|||+|.++.++++. .|..+|+++|+++++++.|++++.... ...+++++++|..+.+ .++.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~------~~~nv~~~~~Di~~~~--~~~~ 154 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY------DIGNVRTSRSDIADFI--SDQM 154 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS------CCTTEEEECSCTTTCC--CSCC
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc------CCCceEEEEeeeeccc--ccce
Confidence 356789999999999999999876 577899999999999999999874221 2468999999999875 3578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
||.|++|+.++ .++++.+.+.|+|||++++.+.+.. ....++.+|++. |.
T Consensus 155 fD~V~ld~p~p---------~~~l~~~~~~LKpGG~lv~~~P~i~-------------------Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 155 YDAVIADIPDP---------WNHVQKIASMMKPGSVATFYLPNFD-------------------QSEKTVLSLSASGMH 205 (250)
T ss_dssp EEEEEECCSCG---------GGSHHHHHHTEEEEEEEEEEESSHH-------------------HHHHHHHHSGGGTEE
T ss_pred eeeeeecCCch---------HHHHHHHHHhcCCCceEEEEeCCcC-------------------hHHHHHHHHHHCCCc
Confidence 99999987553 2578999999999999998766433 356677777765 54
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=6.1e-13 Score=116.31 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=84.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||+|.++..+.+. +.+|+++|+++.+++.|++.+.-. +.++..+.+|+.+. ...+++|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~--------~~~~~~~~~d~~~l-~~~~~~f 103 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSR--------ESNVEFIVGDARKL-SFEDKTF 103 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--------TCCCEEEECCTTSC-CSCTTCE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccc--------cccccccccccccc-cccCcCc
Confidence 456789999999999999999874 679999999999999999877422 35678899999984 4567899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++-. .-..++. -.-..+++++.+.|+|||.+++....
T Consensus 104 D~I~~~~-~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 104 DYVIFID-SIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEEES-CGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEec-chhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999731 1111111 12245899999999999999887664
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.34 E-value=5.4e-13 Score=119.40 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=90.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----- 212 (345)
.+|++||+||++.|..+.++++..| +.+|+.+|+||+..+.|+++|...+ ...++++++||+.+.+..
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g------~~~~i~~~~g~a~~~L~~l~~~~ 131 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG------VDHKIDFREGPALPVLDEMIKDE 131 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT------CGGGEEEEESCHHHHHHHHHHCG
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc------cccceeeeehHHHHHHHHHHhcc
Confidence 4789999999999999999998766 6899999999999999999996443 256999999999998865
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..++||+||+|+.... ..++|+.+.++|+|||++++.
T Consensus 132 ~~~~~fD~iFiDa~k~~-------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 132 KNHGSYDFIFVDADKDN-------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp GGTTCBSEEEECSCSTT-------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ccCCceeEEEeccchhh-------hHHHHHHHHhhcCCCcEEEEc
Confidence 2568999999985532 358999999999999999885
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5.7e-13 Score=118.65 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=89.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
..++++||+||+|+|..+.++++..| +.+|+.+|+||+..+.|++++..... ..++++++||+.+.+..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~------~~~i~~~~Gda~e~l~~~~~~ 130 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA------EHKIDLRLKPALETLDELLAA 130 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC------TTTEEEEESCHHHHHHHHHHT
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc------cceEEEEEeehhhcchhhhhh
Confidence 45799999999999999999998765 68999999999999999999964432 57899999999987653
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
...+||+|++|+.... ..++|+.+.++|+|||++++.
T Consensus 131 ~~~~~fD~ifiD~dk~~-------y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 131 GEAGTFDVAVVDADKEN-------CSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp TCTTCEEEEEECSCSTT-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCccEEEEeCCHHH-------HHHHHHHHHHHhcCCcEEEEe
Confidence 3678999999975532 357889999999999999884
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=1.1e-12 Score=119.81 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.+..+||++|||+|+++.+|++. .|..+|+++|+++++++.|++++..-.. ....+++++++|+.+. ...+.
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~----~~~~nv~~~~~d~~~~-~~~~~ 167 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG----QPPDNWRLVVSDLADS-ELPDG 167 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT----SCCTTEEEECSCGGGC-CCCTT
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc----CCCceEEEEecccccc-cccCC
Confidence 3457889999999999999999876 6889999999999999999986631000 1135899999999874 33578
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH--C
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA--F 293 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~--F 293 (345)
.||.|++|+.+++ +++..+++.|+|||.+++.+.+.+ .....+.+|++. |
T Consensus 168 ~fDaV~ldlp~P~---------~~l~~~~~~LkpGG~lv~~~P~i~-------------------Qv~~~~~~l~~~~~f 219 (264)
T d1i9ga_ 168 SVDRAVLDMLAPW---------EVLDAVSRLLVAGGVLMVYVATVT-------------------QLSRIVEALRAKQCW 219 (264)
T ss_dssp CEEEEEEESSCGG---------GGHHHHHHHEEEEEEEEEEESSHH-------------------HHHHHHHHHHHHSSB
T ss_pred CcceEEEecCCHH---------HHHHHHHhccCCCCEEEEEeCccC-------------------hHHHHHHHHHHcCCe
Confidence 9999999986643 578899999999999998776543 356777778643 6
Q ss_pred C
Q 038076 294 P 294 (345)
Q Consensus 294 ~ 294 (345)
.
T Consensus 220 ~ 220 (264)
T d1i9ga_ 220 T 220 (264)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.34 E-value=4.1e-12 Score=112.28 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=85.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..+..+||+||||+|..+..++++ .|+.+|++||+++.|++.|++...... ...++++..+|..++ ..+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~------~~~~~~~~~~d~~~~---~~~ 107 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH------SEIPVEILCNDIRHV---EIK 107 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC------CSSCEEEECSCTTTC---CCC
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc------ccchhhhccchhhcc---ccc
Confidence 356679999999999999999875 478999999999999999999864221 256888999998876 457
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.+|+|++-.... ..+. -....+++++++.|+|||.+++.-..
T Consensus 108 ~~d~i~~~~~l~-~~~~-~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 108 NASMVILNFTLQ-FLPP-EDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp SEEEEEEESCGG-GSCG-GGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cceeeEEeeecc-ccCh-hhHHHHHHHHHHhCCCCceeeccccc
Confidence 889988743221 1211 13457999999999999999876443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.32 E-value=2.1e-12 Score=118.17 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=85.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||+|.++..+.+.+ +.+|++||++|.+++.|+++.....+ .++++++.+|+.+. ...+++|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl------~~~v~~~~~d~~~l-~~~~~sf 136 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL------ADNITVKYGSFLEI-PCEDNSY 136 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC------TTTEEEEECCTTSC-SSCTTCE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc------cccccccccccccc-ccccccc
Confidence 4567899999999999999998764 57999999999999999987643221 46899999999885 4456899
Q ss_pred cEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++- ++. +++ .-.++++++++.|+|||.+++..+.
T Consensus 137 D~V~~~~~l~--h~~---d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 137 DFIWSQDAFL--HSP---DKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp EEEEEESCGG--GCS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccchhh--hcc---CHHHHHHHHHHhcCCCcEEEEEEee
Confidence 999863 221 222 2357999999999999998886443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.6e-12 Score=114.82 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=82.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|..+..+++..+ .+|++||+++.+++.|++.+.... .++++++++|+.++. ..+++||
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~-------~~~~~f~~~d~~~~~-~~~~~fD 129 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG-------KRVRNYFCCGLQDFT-PEPDSYD 129 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG-------GGEEEEEECCGGGCC-CCSSCEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc-------ccccccccccccccc-ccccccc
Confidence 4567899999999999998875543 689999999999999999886432 357899999999864 3578999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..- .+++.. .-.++++++++.|+|||.+++..
T Consensus 130 ~I~~~~~l-~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 130 VIWIQWVI-GHLTDQ-HLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp EEEEESCG-GGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccc-ccchhh-hhhhHHHHHHHhcCCcceEEEEE
Confidence 99973211 112211 12468999999999999988753
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.30 E-value=6.6e-12 Score=110.76 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=100.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+..+||+||||+|+.+..+.+..|+.+|++||++|.+++.|++.... .+++..+.+|+...-.. ....
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~---------~~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE---------RNNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH---------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc---------cCCceEEEeeccCccccccccce
Confidence 566899999999999999999988888999999999999999887642 35799999999875322 3456
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGK 296 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~ 296 (345)
+|+|+.|.... .....+++++.+.|+|||.+++.......+.. .+.....+...+.+.+-|. .
T Consensus 126 vd~v~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~----------~~~~~~~~~~~~~l~~gf~-i 188 (209)
T d1nt2a_ 126 VDLIYQDIAQK------NQIEILKANAEFFLKEKGEVVIMVKARSIDST----------AEPEEVFKSVLKEMEGDFK-I 188 (209)
T ss_dssp EEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTT----------SCHHHHHHHHHHHHHTTSE-E
T ss_pred EEEEEecccCh------hhHHHHHHHHHHHhccCCeEEEEEEccccCCC----------CCHHHHHHHHHHHHHcCCE-E
Confidence 77777765332 24568999999999999998876543221100 0112456777777777776 4
Q ss_pred EEEEEec
Q 038076 297 VSWKRMP 303 (345)
Q Consensus 297 v~~~~~~ 303 (345)
+....+.
T Consensus 189 ~E~i~L~ 195 (209)
T d1nt2a_ 189 VKHGSLM 195 (209)
T ss_dssp EEEEECT
T ss_pred EEEEccC
Confidence 4444443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.6e-12 Score=118.96 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=94.3
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCC----CCCCCCCCCcEEEEEccccccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSD----LEKPTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~~~~~~~rv~v~~gDa~~~l~~ 212 (345)
+.+..+||++|||+|+++..|++. .|+.+|+++|+++++++.|++++.-.. .........++.++++|...+...
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 457899999999999999999876 578899999999999999998763100 000011256899999999887544
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
....||.||+|+.+++ +++..+++.|+|||++++.+.+.. ....++.+|++
T Consensus 176 ~~~~~fD~V~LD~p~P~---------~~l~~~~~~LKpGG~lv~~~P~i~-------------------Qv~~~~~~l~~ 227 (324)
T d2b25a1 176 IKSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVNIT-------------------QVIELLDGIRT 227 (324)
T ss_dssp -----EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESSHH-------------------HHHHHHHHHHH
T ss_pred cCCCCcceEeecCcCHH---------HHHHHHHHhccCCCEEEEEeCCHH-------------------HHHHHHHHHHH
Confidence 4568999999986643 368899999999999998775443 35677888876
Q ss_pred H
Q 038076 292 A 292 (345)
Q Consensus 292 ~ 292 (345)
.
T Consensus 228 ~ 228 (324)
T d2b25a1 228 C 228 (324)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=2.3e-11 Score=108.78 Aligned_cols=150 Identities=14% Similarity=0.033 Sum_probs=103.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|+.+..+.+..|+.+|++||++|.+++.+++... ..+++..+.+|++......+..+|
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~---------~~~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA---------ERENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT---------TCTTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh---------hhcccceEEEeeccCcccccccce
Confidence 46678999999999999999998888999999999999999988753 246788999999987655444555
Q ss_pred E--EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCC
Q 038076 219 G--IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPG 295 (345)
Q Consensus 219 ~--Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~ 295 (345)
+ |+.|.... -....++.++++.|+|||.+++.......+.. + +-...+++..+.|++. |.
T Consensus 144 v~~i~~~~~~~------~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~---~-------~~~~~~~e~~~~L~~aGF~- 206 (230)
T d1g8sa_ 144 VDVIYEDVAQP------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVT---K-------DPKEIFKEQKEILEAGGFK- 206 (230)
T ss_dssp EEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS---S-------CHHHHHHHHHHHHHHHTEE-
T ss_pred eEEeeccccch------HHHHHHHHHHHHhcccCceEEEEeeccccCCC---C-------CHHHHHHHHHHHHHHcCCE-
Confidence 4 44443321 13467899999999999998876544332110 1 1124466777788776 65
Q ss_pred CEEEEEecCCCCceEEEEe
Q 038076 296 KVSWKRMPERNGENFLALT 314 (345)
Q Consensus 296 ~v~~~~~~~~~~~n~v~~a 314 (345)
.+....+..-..+..++++
T Consensus 207 ive~idL~py~~~H~~vvg 225 (230)
T d1g8sa_ 207 IVDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp EEEEEECTTTSTTEEEEEE
T ss_pred EEEEecCCCCcCCeEEEEE
Confidence 4444444332223444443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.29 E-value=3.2e-12 Score=115.14 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=84.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+.++||+||||+|..+..+.+. +..+|++||+++.+++.|++...... ...++.++++|+..-....+++|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~------~~~~v~f~~~D~~~~~~~~~~~f 94 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK------RRFKVFFRAQDSYGRHMDLGKEF 94 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC------CSSEEEEEESCTTTSCCCCSSCE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcC------CCcceEEEEcchhhhcccccccc
Confidence 346689999999999887777765 34689999999999999998763221 25689999999966433357789
Q ss_pred cEEEEcCCCCCCCCCC-cchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQ-LEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~-l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++-.... +.+.. -.-..+++++.+.|+|||++++.+..
T Consensus 95 D~V~~~~~l~-~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 95 DVISSQFSFH-YAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEEEEESCGG-GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEEEEcceee-ecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9999742211 22111 12246899999999999999987754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.29 E-value=5.2e-12 Score=109.56 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=84.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|..+.++.++ +.+|++||+++.+++.|++...... -+++++...|..+.- .+++||
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~-------~~~~~~~~~d~~~~~--~~~~fD 97 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEG-------LDNLQTDLVDLNTLT--FDGEYD 97 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-------CTTEEEEECCTTTCC--CCCCEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcc-------ccchhhhheeccccc--cccccc
Confidence 35789999999999999999985 5799999999999999998775332 357899999998863 467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .+|.. .-..+++.+++.|+|||++++....
T Consensus 98 ~I~~~~~~~-~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 98 FILSTVVMM-FLEAQ-TIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp EEEEESCGG-GSCTT-HHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEeeeee-cCCHH-HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999743221 23322 3457999999999999998886544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.28 E-value=6.9e-12 Score=113.59 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..++.... .+|++||+++.+++.|++.+.- .++++++++|+.++- -.+++||
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~---------~~~~~~~~~d~~~~~-~~~~~fD 160 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG---------MPVGKFILASMETAT-LPPNTYD 160 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT---------SSEEEEEESCGGGCC-CCSSCEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc---------cccceeEEccccccc-cCCCccc
Confidence 3567899999999999998776543 4899999999999999998752 457899999998863 3468999
Q ss_pred EEEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++-. +..++.. .+++++|++.|+|||.+++.
T Consensus 161 ~I~~~~-----vl~hl~d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 161 LIVIQW-----TAIYLTDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EEEEES-----CGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEeec-----cccccchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 999842 1223332 47899999999999999883
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=3e-12 Score=117.14 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=97.4
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.+..+||++|||+|.++.++++.. |..+|+++|++|++++.|++++.-.. ...++.+..+|..... ...
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g------~~~~v~~~~~d~~~~~--~~~ 171 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG------LIERVTIKVRDISEGF--DEK 171 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT------CGGGEEEECCCGGGCC--SCC
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc------cccCcEEEeccccccc--ccc
Confidence 34678999999999999999998764 67899999999999999999875322 1468999999975543 457
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
.||.|++|+.++ .++++.+.+.|||||.+++.+.+.+ ....++..|++. |.
T Consensus 172 ~~D~V~~d~p~p---------~~~l~~~~~~LKpGG~lv~~~P~~~-------------------Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 172 DVDALFLDVPDP---------WNYIDKCWEALKGGGRFATVCPTTN-------------------QVQETLKKLQELPFI 223 (266)
T ss_dssp SEEEEEECCSCG---------GGTHHHHHHHEEEEEEEEEEESSHH-------------------HHHHHHHHHHHSSEE
T ss_pred ceeeeEecCCCH---------HHHHHHHHhhcCCCCEEEEEeCccc-------------------HHHHHHHHHHHCCce
Confidence 899999987653 2578999999999999998886433 356777888764 54
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=6.1e-12 Score=110.66 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=88.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~I 220 (345)
.-||+||||.|..+..+++.+|+..+++||+++.+++.|.+...... -.+++++.+|+...+.. .+..+|.|
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-------l~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-------AQNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-------CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-------ccCchhcccchhhhhcccCchhhhcc
Confidence 45899999999999999999999999999999999999887764222 35799999999986532 57889999
Q ss_pred EEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 221 VVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 221 i~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
++-..++.. ....+.+.+|++.+++.|+|||.|.+-
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 886555432 123467789999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=2.4e-12 Score=113.89 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=79.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+..+.+. +.+|++||+++.+++.|++... . .++.+|+.+. ...+++||
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~-----------~--~~~~~~~~~l-~~~~~~fD 104 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----------K--NVVEAKAEDL-PFPSGAFE 104 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----------S--CEEECCTTSC-CSCTTCEE
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc-----------c--cccccccccc-cccccccc
Confidence 46789999999999999999874 6799999999999999999752 1 2567888874 44578999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-...-..++ ...++++++.+.|+|||++++.+.+
T Consensus 105 ~ii~~~~~~~~~~---d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 105 AVLALGDVLSYVE---NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp EEEECSSHHHHCS---CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ceeeecchhhhhh---hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9986211101122 2357899999999999999998754
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.26 E-value=8.4e-12 Score=110.43 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=81.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|.+++.+.+. +.+|++||+++++++.|++.+. .+++++++|+.++. .+++||
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~-----------~~~~~~~~~~~~~~--~~~~fD 83 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK-----------DGITYIHSRFEDAQ--LPRRYD 83 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC-----------SCEEEEESCGGGCC--CSSCEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc-----------cccccccccccccc--cccccc
Confidence 45789999999999999998764 4689999999999999999863 35899999998863 468899
Q ss_pred EEEEcCCCCCCCCCCcc-hHHHHHHHH-hccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLE-EVATWLKLK-DRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~-t~ef~~~~~-~~L~pgGvlvvn~~~~~ 261 (345)
+|++-. +..|+. ..+++.+++ +.|+|||.+++.+.+..
T Consensus 84 ~I~~~~-----vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 84 NIVLTH-----VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp EEEEES-----CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred cccccc-----eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 998731 222222 357788887 67999999999876533
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.26 E-value=8.4e-12 Score=114.48 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=88.9
Q ss_pred HHHHHh-hccccCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc
Q 038076 128 YWDEFV-SLPAIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD 205 (345)
Q Consensus 128 Y~~~~~-~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD 205 (345)
|.+.+. .+..+.+|.+||+||||+|..+..+.+..| +.+|+++|+++.+++.|++.+... ..+++++.+|
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~--------~~~~~f~~~d 85 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL--------PYDSEFLEGD 85 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS--------SSEEEEEESC
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc--------cccccccccc
Confidence 555443 233456789999999999999999988776 489999999999999999988532 3478999999
Q ss_pred cccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 206 VFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 206 a~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+.+. . .+++||+|++...-. +++. -..+++++++.|+|||.+++..
T Consensus 86 ~~~~-~-~~~~fD~v~~~~~l~-~~~d---~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 86 ATEI-E-LNDKYDIAICHAFLL-HMTT---PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp TTTC-C-CSSCEEEEEEESCGG-GCSS---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccc-c-ccCCceEEEEehhhh-cCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 9875 2 356899999853221 2221 2578999999999999988754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.25 E-value=4.1e-12 Score=106.44 Aligned_cols=110 Identities=13% Similarity=0.006 Sum_probs=85.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|+++.+++.+ ...+|+.||+|+.+++.+++++.... ...+++++.+|+.+++....++||
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~------~~~~~~ii~~D~~~~l~~~~~~fD 85 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK------AENRFTLLKMEAERAIDCLTGRFD 85 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT------CGGGEEEECSCHHHHHHHBCSCEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc------cccchhhhcccccccccccccccc
Confidence 35789999999999999988765 34699999999999999999886443 256899999999999988889999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~~ 260 (345)
+|++|.+-. .-...+.++.+. +.|+|+|++++-....
T Consensus 86 iIf~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~ 124 (152)
T d2esra1 86 LVFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDKT 124 (152)
T ss_dssp EEEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred eeEechhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence 999984211 112234455543 4599999999865543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=5.4e-11 Score=106.14 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=104.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~ 215 (345)
.+..+||+||||+|+.+..+.+.. |..+|++||++|.+++.+++...- .+++..+.+|++..-. ....
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~---------~~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE---------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS---------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh---------cCCceEEEEECCCccccccccc
Confidence 467899999999999999999874 678999999999999999987642 3568888999876432 2357
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~ 295 (345)
.+|+|++|+... -....+++++++.|+|||.+++.......+.. .+.....+.+.+.+++.|.
T Consensus 143 ~vD~i~~d~~~~------~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~----------~~~~~v~~~v~~l~~~gf~- 205 (227)
T d1g8aa_ 143 KVDVIFEDVAQP------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT----------KEPEQVFREVERELSEYFE- 205 (227)
T ss_dssp CEEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT----------SCHHHHHHHHHHHHHTTSE-
T ss_pred ceEEEEEEcccc------chHHHHHHHHHHhcccCCeEEEEEECCccCCC----------CCHHHHHHHHHHHHHcCCE-
Confidence 899999986543 24567999999999999998876544332110 0112344555555555666
Q ss_pred CEEEEEecCCCCceEEEEeC
Q 038076 296 KVSWKRMPERNGENFLALTG 315 (345)
Q Consensus 296 ~v~~~~~~~~~~~n~v~~a~ 315 (345)
.+....+..-..+..++++.
T Consensus 206 iie~i~L~p~~~~H~~vv~r 225 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred EEEEEcCCCCCCceEEEEEE
Confidence 44433443322234455554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=7.3e-12 Score=113.75 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=79.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+.+. +.+|++||+||.+++.|+++.... +-+.+++++|..+.+. .++||
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n--------~~~~~~~~~d~~~~~~--~~~fD 186 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRN--------GVRPRFLEGSLEAALP--FGPFD 186 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHT--------TCCCEEEESCHHHHGG--GCCEE
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHc--------CCceeEEecccccccc--ccccc
Confidence 46789999999999999888764 578999999999999999987543 2346789999887643 57899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++..... .-.+++..+++.|+|||.+++.
T Consensus 187 ~V~ani~~~-------~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 187 LLVANLYAE-------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhccccc-------cHHHHHHHHHHhcCCCcEEEEE
Confidence 999864321 2357888999999999999875
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.1e-11 Score=113.07 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|..+..+.+..|+.++++||+++.+++.|++.. ++++++++|+.+. .-.++.||
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------~~~~~~~~d~~~l-~~~~~sfD 149 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------PQVTFCVASSHRL-PFSDTSMD 149 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------TTSEEEECCTTSC-SBCTTCEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------------ccccceeeehhhc-cCCCCCEE
Confidence 4678999999999999999999889999999999999999999864 4688999999884 44678999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|++- +. |. .++++.+.|||||.+++...+...
T Consensus 150 ~v~~~-~~----~~------~~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 150 AIIRI-YA----PC------KAEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EEEEE-SC----CC------CHHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEeec-CC----HH------HHHHHHHHhCCCcEEEEEeeCCcc
Confidence 99962 11 22 256789999999999998876553
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=1.3e-11 Score=111.45 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||+||||+|..+..+.+.+|+.+++++|+ |++++.+++++.... ...|++++.+|..+. .+.+||
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~------~~~rv~~~~~D~~~~---~~~~~D 148 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG------LSDRVDVVEGDFFEP---LPRKAD 148 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT------CTTTEEEEECCTTSC---CSSCEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh------cccchhhccccchhh---cccchh
Confidence 4568999999999999999999999999999998 778999998875332 257899999998764 356799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..-. ..+. -...++++++++.|+|||.+++.-
T Consensus 149 ~v~~~~vlh-~~~d-~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 149 AIILSFVLL-NWPD-HDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred heeeccccc-cCCc-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence 998732211 1111 123468999999999999887753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.23 E-value=9.6e-12 Score=105.87 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=86.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC-----CCCCCCcEEEEEccccccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK-----PTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~-----~~~~~~rv~v~~gDa~~~l~~ 212 (345)
+.++.+||++|||+|..+.+|+++ +.+|++||+++.+++.|++......... ........+++.+|..+.-..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 356789999999999999999986 6899999999999999999875321100 011245567888888775444
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
....||+|+.-..-. .++. -....+++.+.+.|+|||.+++.......
T Consensus 96 ~~~~~D~i~~~~~l~-~l~~-~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMI-ALPA-DMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGG-GSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeE-ecch-hhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 557899998632221 1221 12356899999999999998776554443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=2.8e-11 Score=111.22 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=85.5
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.+..+||+||||.|.++.++.+.+ +.+|++|+++++.++.|++...-..+ ..++.+...|.+++ +++
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l------~~~~~~~~~d~~~~----~~~ 117 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT------NRSRQVLLQGWEDF----AEP 117 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC------SSCEEEEESCGGGC----CCC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc------ccchhhhhhhhhhh----ccc
Confidence 34677899999999999999988765 47999999999999999988743332 46788898998764 578
Q ss_pred ccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||.|++ +.+.+ ++. -.-..+|+.+++.|+|||.++++....
T Consensus 118 fD~i~si~~~eh--~~~-~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 118 VDRIVSIEAFEH--FGH-ENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp CSEEEEESCGGG--TCG-GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hhhhhHhhHHHH--hhh-hhHHHHHHHHHhccCCCceEEEEEeec
Confidence 999986 33221 221 123689999999999999999986543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=4.6e-11 Score=104.92 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=87.5
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~I 220 (345)
.-||+||||.|..+..+++.+|+..+++||+++.++..|.+...-.. -++++++.+|+..++.. ....+|.|
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-------l~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-------VPNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-------CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-------cccceeeecCHHHHhhhccCCceehh
Confidence 45999999999999999999999999999999999998877653222 35799999999987643 56889999
Q ss_pred EEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 221 VVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 221 i~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
++-..+++. .-..+.+.+|++.+.+.|+|||.+.+-
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 886555432 112467899999999999999999653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.6e-11 Score=108.42 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=85.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+.+||++|||+|.++..+++..|+.+|+++|+++..+++|+++..... -.+++++.+|..+.+. +.+||
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~-------~~~v~~~~~d~~~~~~--~~~fD 177 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-------IKNIHILQSDWFSALA--GQQFA 177 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-------CCSEEEECCSTTGGGT--TCCEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC-------cccceeeecccccccC--CCcee
Confidence 35678999999999999999999999999999999999999998864221 2469999999888653 57999
Q ss_pred EEEEcCCCCC------------CCC-CCcc--------hHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEG------------KVL-PQLE--------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~------------~~p-~~l~--------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.+--. +.| ..+. -..++..+.++|+|||.+++-+.
T Consensus 178 lIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 178 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred EEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999743210 001 1121 24577888999999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.2e-11 Score=106.43 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=80.8
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.+..+||+||||+|..+..+.+.. +..+|+++|++|++++.|++.+.... -.++.++++|+.+... ...
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-------~~n~~~~~~d~~~~~~-~~~ 143 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-------IENVIFVCGDGYYGVP-EFS 143 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCCG-GGC
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-------ccccccccCchHHccc-ccc
Confidence 45677899999999999999888764 57899999999999999999885332 3578899999987543 356
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|+++..-. .+| +.+.+.|+|||.+++-+.
T Consensus 144 ~fD~I~~~~~~~-~~p---------~~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 144 PYDVIFVTVGVD-EVP---------ETWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp CEEEEEECSBBS-CCC---------HHHHHHEEEEEEEEEEBC
T ss_pred chhhhhhhccHH-HhH---------HHHHHhcCCCcEEEEEEC
Confidence 899999864322 222 245678999999987553
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.2e-11 Score=109.58 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=84.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----- 212 (345)
.+|++||+||+|.|..+.++++..+ +.+|+++|++|++.+.|++++...+. ..++++++||+.+.+..
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl------~~~i~l~~Gd~~e~l~~l~~~~ 128 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL------QDKVTILNGASQDLIPQLKKKY 128 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC------GGGEEEEESCHHHHGGGHHHHS
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC------Cccceeeeccccccccchhhcc
Confidence 4789999999999999999988654 68999999999999999988854332 46899999999998764
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..++||+|++|.....+ .....+.++.++|+|||++++.
T Consensus 129 ~~~~~D~ifiD~~~~~~-----~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 129 DVDTLDMVFLDHWKDRY-----LPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp CCCCEEEEEECSCGGGH-----HHHHHHHHHTTCEEEEEEEEES
T ss_pred cccccceeeeccccccc-----ccHHHHHHHhCccCCCcEEEEe
Confidence 34689999999533211 1123466677899999998873
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=9.1e-11 Score=108.38 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=86.0
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.+..+||+||||.|+++.++.+.++ ++|++++++++.++.|++......+ ..++++...|.+. .+++
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l------~~~v~~~~~d~~~----~~~~ 126 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS------PRRKEVRIQGWEE----FDEP 126 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCC------SSCEEEEECCGGG----CCCC
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhcc------chhhhhhhhcccc----cccc
Confidence 346788999999999999999987765 7999999999999999887643322 4689999999764 3688
Q ss_pred ccEEEE-cCCCCCCCCCC------cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVV-DLFSEGKVLPQ------LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~-D~f~~~~~p~~------l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||.|++ ..+.+ +++. -.=..+|+.+.+.|+|||.+++..+...
T Consensus 127 fD~i~sie~~eH--~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 127 VDRIVSLGAFEH--FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp CSEEEEESCGGG--TTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred cceEeechhHHh--cchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 999986 33322 2111 1236899999999999999999876543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.14 E-value=6.4e-11 Score=110.71 Aligned_cols=118 Identities=11% Similarity=-0.061 Sum_probs=89.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||+++||+|.++.+++.. ...+|++||+++..++.|++++....+ ...+++++.+|+.++++. .++
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l-----~~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTC
T ss_pred hCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcc-----cCcceEEEEccHHHHHHHHHhhcC
Confidence 45789999999999999887653 446899999999999999999865543 245899999999999864 567
Q ss_pred cccEEEEcCCCCCCCCCCcc-----hHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLE-----EVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~-----t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||+||+|.+.-..-+.... -.+.++.+.+.|+|||++++.+.+...
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~ 268 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 268 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence 99999999754221111111 135777888999999999886665443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.14 E-value=1.2e-10 Score=103.71 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=79.7
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.+..+||+||||+|.++..+.+. ..+|+++|+++++++.|++.+.. ..+++++++|+..... ...+
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~---------~~nv~~~~~d~~~g~~-~~~p 134 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY---------YNNIKLILGDGTLGYE-EEKP 134 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT---------CSSEEEEESCGGGCCG-GGCC
T ss_pred hhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc---------ccccccccCchhhcch-hhhh
Confidence 4467789999999999999888876 46899999999999999998752 3589999999987543 3578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||.|++.+.-. .+| +.+.+.|+|||++++-+..
T Consensus 135 fD~Iiv~~a~~-~ip---------~~l~~qLk~GGrLV~pvg~ 167 (224)
T d1vbfa_ 135 YDRVVVWATAP-TLL---------CKPYEQLKEGGIMILPIGV 167 (224)
T ss_dssp EEEEEESSBBS-SCC---------HHHHHTEEEEEEEEEEECS
T ss_pred HHHHHhhcchh-hhh---------HHHHHhcCCCCEEEEEEcC
Confidence 99999965322 222 2345789999999987653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=1.5e-10 Score=106.69 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=86.6
Q ss_pred cccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 136 PAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 136 ~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..+.+..+||+||||.|.++.++.+.+ +++|+++.++++-++.|++...-.+ ...++++..+|.++. ++
T Consensus 58 l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g------~~~~v~~~~~d~~~~----~~ 126 (285)
T d1kpga_ 58 LGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE------NLRSKRVLLAGWEQF----DE 126 (285)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC------CCSCEEEEESCGGGC----CC
T ss_pred cCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh------hhhhhHHHHhhhhcc----cc
Confidence 344677899999999999999988876 5899999999999999998764333 257899999998764 57
Q ss_pred cccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||.|+. ..+. ++. +-.-..+|+.+.+.|+|||.+++..+.
T Consensus 127 ~fD~i~si~~~e--h~~-~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 127 PVDRIVSIGAFE--HFG-HERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CCSEEEEESCGG--GTC-TTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cccceeeehhhh--hcC-chhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 8999885 2222 121 123357999999999999999987665
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=5.4e-11 Score=111.44 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=88.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||++|||+|..+..+++. +..+|++||+++..++.|++++..... .++++++++|+.+++.. .++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl------~~~~~~~~~d~~~~~~~~~~~~~ 216 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV------EDRMKFIVGSAFEEMEKLQKKGE 216 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC------GGGEEEEESCHHHHHHHHHHTTC
T ss_pred CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCC------CccceeeechhhhhhHHHHhccC
Confidence 45789999999999999988865 446999999999999999998865542 46899999999988643 578
Q ss_pred cccEEEEcCCCCCCCCCCcc-----hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLE-----EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~-----t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+|++|.+.......... -.+++..+.+.|+|||+++....+..
T Consensus 217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99999999755322111111 13467778889999999887554443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.1e-10 Score=103.36 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=89.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-------C---CCCCCCcEEEEEccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-------K---PTATGGVLQVHIGDVFS 208 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-------~---~~~~~~rv~v~~gDa~~ 208 (345)
.+..+||++|||.|..+.+|++. +.+|++||++|.+++.|++..+..... . ......+++++++|..+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 45789999999999999999874 689999999999999999876532100 0 01235689999999998
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
........||+|+.-..-. .+++. ....+++.+.+.|+|||.+++.....+.
T Consensus 122 l~~~~~~~fd~i~~~~~l~-~~~~~-~r~~~~~~~~~~LkpgG~~~l~~~~~~~ 173 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALV-AINPG-DRKCYADTMFSLLGKKFQYLLCVLSYDP 173 (229)
T ss_dssp GGGSCCCCEEEEEESSSTT-TSCGG-GHHHHHHHHHHTEEEEEEEEEEEEECCT
T ss_pred ccccccCceeEEEEEEEEE-eccch-hhHHHHHHHHhhcCCcceEEEEEcccCC
Confidence 7666678999998643222 23222 3457899999999999987766655443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.12 E-value=1.2e-10 Score=105.46 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=82.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
...++||+||||+|..+..+++.+|+.+++++|+ |++++.|++++.-.+ ..+|++++.+|..+. .+..||
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~------~~~ri~~~~~d~~~~---~p~~~D 149 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG------LADRVTVAEGDFFKP---LPVTAD 149 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT------CTTTEEEEECCTTSC---CSCCEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC------Ccceeeeeeeecccc---ccccch
Confidence 4567899999999999999999999999999998 899999998874332 257899999998764 345799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++--.-+ ..+. -...++++++++.|+|||.+++.-
T Consensus 150 ~v~~~~vLh-~~~d-~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 150 VVLLSFVLL-NWSD-EDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEEEESCGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccccc-ccCc-HHHHHHHHHHHhhcCCcceeEEEE
Confidence 998732111 1111 123578999999999999887753
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.11 E-value=8.1e-11 Score=109.41 Aligned_cols=117 Identities=11% Similarity=-0.023 Sum_probs=87.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---AS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~ 214 (345)
..++++||+++||+|.++.++++. +.+|+.||+++..++.|++++.+... .+.+++++.+|+.+|++. ..
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~-----~~~~~~~i~~D~~~~l~~~~~~~ 202 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL-----EQAPIRWICEDAMKFIQREERRG 202 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC-----TTSCEEEECSCHHHHHHHHHHHT
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcc-----cCCcEEEEeCCHHHhHHHHhhcC
Confidence 356789999999999999988863 56999999999999999999865442 245799999999999864 46
Q ss_pred CcccEEEEcCCCCCCCCCC------cchHHHHHHHHhccCCCcE-EEEEecCCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQ------LEEVATWLKLKDRLMPNGR-FMVNCGGID 261 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~------l~t~ef~~~~~~~L~pgGv-lvvn~~~~~ 261 (345)
++||+||+|.+.-..-+.. -+-...++.+++.|+|||. +++++.+..
T Consensus 203 ~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~ 256 (309)
T d2igta1 203 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR 256 (309)
T ss_dssp CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred CCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 8999999996542111111 1223456778899999986 555665443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.2e-10 Score=103.47 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=83.3
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.+..+||+||||+|..+..+.+. .|..+|++||+++++++.|++++...... .....+++++.+|+..-.. ...
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~--~~~~~~~~~~~gD~~~~~~-~~~ 149 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT--LLSSGRVQLVVGDGRMGYA-EEA 149 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH--HHHTSSEEEEESCGGGCCG-GGC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc--cccccceEEEEeecccccc-hhh
Confidence 4456789999999999999888775 46789999999999999999887421100 0123578999999987543 467
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.||+|+++.... .+| +.+.+.|+|||++++-+....
T Consensus 150 ~fD~I~~~~~~~-~ip---------~~l~~~LkpGG~LV~pv~~~~ 185 (224)
T d1i1na_ 150 PYDAIHVGAAAP-VVP---------QALIDQLKPGGRLILPVGPAG 185 (224)
T ss_dssp CEEEEEECSBBS-SCC---------HHHHHTEEEEEEEEEEESCTT
T ss_pred hhhhhhhhcchh-hcC---------HHHHhhcCCCcEEEEEEccCC
Confidence 899999975332 222 346688999999998776443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=1.2e-10 Score=108.84 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=87.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||+++||+|..+.++.. ...+|++||+++.+++.|++++..... .+++++.+|+.++++. ..+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl-------~~~~~i~~d~~~~~~~~~~~~~ 214 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGL-------GNVRVLEANAFDLLRRLEKEGE 214 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTC-------TTEEEEESCHHHHHHHHHHTTC
T ss_pred hCCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCC-------CCcceeeccHHHHhhhhHhhhc
Confidence 3578999999999999988775 357999999999999999998865432 3689999999998643 578
Q ss_pred cccEEEEcCCCCCCCCCCcch-----HHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEE-----VATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t-----~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+|++|.+....-.....+ .+.+..+.+.|+|||++++...+..
T Consensus 215 ~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 215 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999999997653222222221 3567788899999999887655443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=4.1e-11 Score=110.00 Aligned_cols=115 Identities=8% Similarity=0.068 Sum_probs=78.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~y 217 (345)
+.++||+||||+|..+..|++. +.+|++||+++.|++.|++........ ....+..+...|....-.. ..++|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKE---PAFDKWVIEEANWLTLDKDVPAGDGF 130 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTS---HHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccc---cccceeeeeeccccccccccCCCCCc
Confidence 4679999999999999999875 579999999999999999876322100 0011234444554432111 35789
Q ss_pred cEEEEcCCCCCCCCCCc----chHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQL----EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l----~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++-...-.+++... .-..+++++++.|+|||++++...+
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 99997432212333221 2346999999999999999997754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.6e-10 Score=99.56 Aligned_cols=107 Identities=14% Similarity=-0.028 Sum_probs=85.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+++||+|+++.+++.+ +..+|+.||+|+..++.++++...-. ..+.+++.+|+.+++....++||+
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~-------~~~~~ii~~d~~~~l~~~~~~fDl 114 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLK-------AGNARVVNSNAMSFLAQKGTPHNI 114 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT-------CCSEEEECSCHHHHHSSCCCCEEE
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhcc-------ccceeeeeecccccccccccccCE
Confidence 5679999999999999988875 44699999999999999999875322 346899999999999888899999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~ 259 (345)
|++|.+-.. -.-.+.+..+.+ .|+++|++++-...
T Consensus 115 If~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 115 VFVDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp EEECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 999953221 123456666655 59999999986543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4.9e-10 Score=103.76 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=86.1
Q ss_pred chHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc
Q 038076 126 GSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD 205 (345)
Q Consensus 126 ~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD 205 (345)
..|.+++.......+.++||+||||+|.++..+++. +..+|+++|+++.+...++..-. .. ...+++++++|
T Consensus 21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~-~~------~~~~i~~~~~~ 92 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRL-NK------LEDTITLIKGK 92 (311)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHH-TT------CTTTEEEEESC
T ss_pred HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHH-hC------CCccceEEEee
Confidence 457676654444456789999999999999988875 44799999999998765443222 11 25789999999
Q ss_pred cccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 206 VFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 206 a~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
..+. ....++||+|+++..... ...+..-..++....+.|+|||.++
T Consensus 93 ~~~l-~~~~~~~D~Ivse~~~~~-~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 93 IEEV-HLPVEKVDVIISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTTS-CCSCSCEEEEEECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHh-cCccccceEEEEeeeeee-cccccccHHHHHHHHhcCCCCcEEe
Confidence 9985 445689999999765532 2233334566677788899999987
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.05 E-value=1e-10 Score=106.42 Aligned_cols=103 Identities=10% Similarity=-0.064 Sum_probs=85.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||.|+++..+++. +..+|++||+||..++.++++...... +.+++++.+|++++.. ...||
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l------~~~v~~~~~D~~~~~~--~~~~D 176 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV------EDRMSAYNMDNRDFPG--ENIAD 176 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC------TTTEEEECSCTTTCCC--CSCEE
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCC------CceEEEEEcchHHhcc--CCCCC
Confidence 46789999999999999988876 557999999999999999998866543 5689999999999864 47899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.|+++.+. .+.+|+..+.+.|++||++.+...
T Consensus 177 ~Ii~~~p~--------~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 177 RILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp EEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCC--------chHHHHHHHHhhcCCCCEEEEEec
Confidence 99986422 345789999999999999876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=2.5e-10 Score=98.85 Aligned_cols=98 Identities=16% Similarity=0.040 Sum_probs=76.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+. ++++||++|.+++.|++. +++++.+|+.+. ...+++||
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~--------------~~~~~~~d~~~l-~~~~~~fD 93 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR--------------GVFVLKGTAENL-PLKDESFD 93 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT--------------TCEEEECBTTBC-CSCTTCEE
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc--------------cccccccccccc-cccccccc
Confidence 445689999999999887763 468999999999999873 378999999875 34578999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++-..- ..++. -.++++++++.|+|||.+++......
T Consensus 94 ~I~~~~~l-~h~~d---~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 94 FALMVTTI-CFVDD---PERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp EEEEESCG-GGSSC---HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cccccccc-ccccc---cccchhhhhhcCCCCceEEEEecCCc
Confidence 99973211 12221 35789999999999999999877654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=3.9e-10 Score=105.31 Aligned_cols=118 Identities=11% Similarity=0.131 Sum_probs=84.8
Q ss_pred hHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 127 SYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 127 ~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.|.+++.......+.++||+||||+|.++..+.+. +..+|+++|.++ +++.|++...... ...+++++++|.
T Consensus 25 ~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~------~~~~i~~i~~~~ 96 (328)
T d1g6q1_ 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG------FSDKITLLRGKL 96 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT------CTTTEEEEESCT
T ss_pred HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC------ccccceEEEeeh
Confidence 35554432222246789999999999999888764 457999999997 5567776553222 256899999999
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.+. ...+++||+|++..... .....-.-..++..+.+.|+|||+++
T Consensus 97 ~~l-~~~~~~~D~i~se~~~~-~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 97 EDV-HLPFPKVDIIISEWMGY-FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTS-CCSSSCEEEEEECCCBT-TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhc-cCcccceeEEEEEecce-eeccchhHHHHHHHHHhccCCCeEEE
Confidence 885 34578999999976553 22233344567888889999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=6.4e-10 Score=103.38 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=84.2
Q ss_pred hHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 127 SYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 127 ~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.|.+++..-....+.++||+||||+|.++..+++. +..+|++||+++.+. .+++...... ...+++++.+|.
T Consensus 20 ~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~~-~a~~~~~~n~------~~~~v~~~~~~~ 91 (316)
T d1oria_ 20 TYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISD-YAVKIVKANK------LDHVVTIIKGKV 91 (316)
T ss_dssp HHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHH-HHHHHHHHTT------CTTTEEEEESCT
T ss_pred HHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHHh-hhhhHHHHhC------CccccceEeccH
Confidence 45555432222336788999999999999888874 446899999998764 4444432222 246899999999
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.+. ....+++|+|+++.... ....+-.-.+++..+.+.|+|||.++
T Consensus 92 ~~~-~~~~~~~D~ivs~~~~~-~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 92 EEV-ELPVEKVDIIISEWMGY-CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TTC-CCSSSCEEEEEECCCBB-TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred HHc-ccccceeEEEeeeeeee-eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 885 44568999999876543 22333344678889999999999986
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.98 E-value=4.3e-10 Score=96.79 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=85.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||+++||+|+++.+++.+ ...+|+.||.|+..++.+++++..-. ...+++++.+|+.++++. ...
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~------~~~~~~i~~~D~~~~l~~~~~~~~ 112 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK------EPEKFEVRKMDANRALEQFYEEKL 112 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT------CGGGEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh------cccccccccccchhhhhhhcccCC
Confidence 46789999999999999998875 45689999999999999999874221 135799999999998864 567
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~~~ 261 (345)
+||+|++|.+-. .. .-.+.++.+.+ .|+++|++++-.....
T Consensus 113 ~fDlIflDPPY~----~~-~~~~~l~~i~~~~~L~~~giIi~E~~~~~ 155 (182)
T d2fhpa1 113 QFDLVLLDPPYA----KQ-EIVSQLEKMLERQLLTNEAVIVCETDKTV 155 (182)
T ss_dssp CEEEEEECCCGG----GC-CHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CcceEEechhhh----hh-HHHHHHHHHHHCCCCCCCEEEEEEcCCCC
Confidence 899999985321 11 12456666644 5999999998765443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.97 E-value=8.9e-10 Score=97.31 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred cccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 136 PAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 136 ~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..+.+..+||+||+|+|+.+..+.+.. +.+|+++|+++.+++.|++.+.... -.+++++++|+..-.. ...
T Consensus 74 L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g-------~~nv~~~~gd~~~g~~-~~~ 144 (215)
T d1jg1a_ 74 ANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG-------VKNVHVILGDGSKGFP-PKA 144 (215)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCCG-GGC
T ss_pred hccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC-------CceeEEEECccccCCc-ccC
Confidence 345677899999999999998887754 4679999999999999998874322 3689999999988543 468
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||.|++...-. .+|. .+.+.|+|||++++-+....
T Consensus 145 pfD~Iiv~~a~~-~ip~---------~l~~qL~~gGrLv~pv~~~~ 180 (215)
T d1jg1a_ 145 PYDVIIVTAGAP-KIPE---------PLIEQLKIGGKLIIPVGSYH 180 (215)
T ss_dssp CEEEEEECSBBS-SCCH---------HHHHTEEEEEEEEEEECSSS
T ss_pred cceeEEeecccc-cCCH---------HHHHhcCCCCEEEEEEccCC
Confidence 899999864332 3332 24567999999998776544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.6e-09 Score=98.17 Aligned_cols=112 Identities=15% Similarity=0.038 Sum_probs=77.3
Q ss_pred CCEEEEeecccHHHHHHHH----hCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-----
Q 038076 142 GPIAIYGLGGGTAAHLMLD----LWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS----- 210 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~----~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l----- 210 (345)
.+||+||||+|.++..+++ .+++ .++++||+++.+++.|++.+.-... ...-++.++..++.++.
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN----LENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS----CTTEEEEEECSCHHHHHHHHTT
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc----cccccccchhhhhhhhcchhcc
Confidence 3799999999998777654 3444 5789999999999999998753221 11223455555554432
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
...+++||+|++-..-. +++ .-..+++.+++.|+|||.+++.+....
T Consensus 118 ~~~~~~fD~I~~~~~l~-~~~---d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 118 KKELQKWDFIHMIQMLY-YVK---DIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp SSSCCCEEEEEEESCGG-GCS---CHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred cCCCCceeEEEEcccee-cCC---CHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 12578999999732111 122 125799999999999999998877554
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.93 E-value=2.9e-09 Score=94.40 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=80.7
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDLW------PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS 210 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~~------p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l 210 (345)
.+.+..+||+||||+|+.+..+.+.. +..+|++||+++++++.|+++....... ...-.++.++++|+.+-.
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~--~~~~~nv~~~~~d~~~~~ 154 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS--MLDSGQLLIVEGDGRKGY 154 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH--HHHHTSEEEEESCGGGCC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh--hcCccEEEEEeccccccc
Confidence 45677899999999999988877652 3468999999999999998875311000 001347999999998854
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
. ...+||.|+++.... .+| +.+.+.|+|||++++-+...
T Consensus 155 ~-~~~~fD~Iiv~~a~~-~~p---------~~l~~~Lk~gG~lV~pvg~~ 193 (223)
T d1r18a_ 155 P-PNAPYNAIHVGAAAP-DTP---------TELINQLASGGRLIVPVGPD 193 (223)
T ss_dssp G-GGCSEEEEEECSCBS-SCC---------HHHHHTEEEEEEEEEEESCS
T ss_pred c-cccceeeEEEEeech-hch---------HHHHHhcCCCcEEEEEEecC
Confidence 3 367899999976432 233 23568999999999877643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=8.7e-10 Score=93.80 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=74.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc---ccCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS---EDAS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l---~~~~ 214 (345)
..+..+||++|||+|.++.+++++ +.++++||+||.+++.+++++..... +. +++..|+-.++ ....
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~------~~--~v~~~~~d~~~~~~~~~~ 108 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL------GA--RVVALPVEVFLPEAKAQG 108 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC------CC--EEECSCHHHHHHHHHHTT
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcc------cc--ceeeeehhcccccccccC
Confidence 356789999999999999988774 46899999999999999988753321 23 45555655543 2356
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHH--HhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKL--KDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~--~~~L~pgGvlvvn~~ 258 (345)
++||+|++|.+-... + .+.+..+ ...|+|||++++...
T Consensus 109 ~~fD~If~DPPY~~~----~--~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 109 ERFTVAFMAPPYAMD----L--AALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCEEEEEECCCTTSC----T--THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CccceeEEccccccC----H--HHHHHHHHHcCCcCCCeEEEEEec
Confidence 899999998532211 1 2233333 346999999987654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3.4e-08 Score=88.78 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=65.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-----CC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-----AS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-----~~ 214 (345)
+..++|+||+|+|.++..+.+..|+.+++++|||++.+++|+++.....+ ..|+.+++.|....+.. ..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l------~~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL------SDLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC------CcceeeeeeccHHhhhhhhhhccc
Confidence 34689999999999999999888999999999999999999998865443 57899998876655432 35
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
++||+|++..
T Consensus 135 ~~fD~ivsNP 144 (250)
T d2h00a1 135 IIYDFCMCNP 144 (250)
T ss_dssp CCBSEEEECC
T ss_pred CceeEEEecC
Confidence 6899999965
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=1.5e-08 Score=92.17 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=83.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+++++|+|+|.++..+++ +|+.+|+++|++|..+++|+++..... ...++.++.+|..+.+....++||+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~------~~~~~~i~~~~~~~~~~~~~~~fDl 182 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHG------VSDRFFVRKGEFLEPFKEKFASIEM 182 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTT------CTTSEEEEESSTTGGGGGGTTTCCE
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcC------CCceeEEeecccccccccccCcccE
Confidence 456899999999999988875 589999999999999999999875332 2468999999999887666789999
Q ss_pred EEEcCCCCC---CCCCC--------cc----hHHHHHH-HHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEG---KVLPQ--------LE----EVATWLK-LKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~---~~p~~--------l~----t~ef~~~-~~~~L~pgGvlvvn~~ 258 (345)
|+++.+--. ..+.. |+ -.++++. +.+.|+|||.+++-+.
T Consensus 183 IVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 183 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred EEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999753211 01110 11 1245544 5678999999988776
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=9.9e-09 Score=89.35 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=69.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||++|||+|.++..++.. +..+|++||+|+..++.|+++.... +.+.+++.+|+..+ +++||+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~--------~~~~~~~~~d~~~~----~~~fD~ 112 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF--------KGKFKVFIGDVSEF----NSRVDI 112 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG--------TTSEEEEESCGGGC----CCCCSE
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHc--------CCCceEEECchhhh----CCcCcE
Confidence 5689999999999999887764 5579999999999999999986532 45789999998775 678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
|++|.+-... ......+|+....+
T Consensus 113 Vi~nPP~~~~--~~~~d~~~l~~~~~ 136 (201)
T d1wy7a1 113 VIMNPPFGSQ--RKHADRPFLLKAFE 136 (201)
T ss_dssp EEECCCCSSS--STTTTHHHHHHHHH
T ss_pred EEEcCccccc--cccccHHHHHHHHh
Confidence 9998754321 22234566654433
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.6e-08 Score=94.28 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=82.7
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc----------CCCCCCCCCCCCC
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF----------GLSDLEKPTATGG 197 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f----------~~~~~~~~~~~~~ 197 (345)
..+.|.....+.+...||+||||.|.++..+++.++..++.+||++|.+++.|++.. +.. ..
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~--------~~ 210 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--------HA 210 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC--------CC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc--------CC
Confidence 334443333456678899999999999999988888889999999999999987542 222 46
Q ss_pred cEEEEEcccccccccCC--CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 198 VLQVHIGDVFSPSEDAS--GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 198 rv~v~~gDa~~~l~~~~--~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+++++++|+.+. ...+ ...|+|++..+.. .+ .-...+.++.+.|||||.+++.
T Consensus 211 ~i~~~~gd~~~~-~~~~~~~~advi~~~~~~f---~~--~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 211 EYTLERGDFLSE-EWRERIANTSVIFVNNFAF---GP--EVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CEEEEECCTTSH-HHHHHHHHCSEEEECCTTT---CH--HHHHHHHHHHTTCCTTCEEEES
T ss_pred ceEEEECccccc-ccccccCcceEEEEcceec---ch--HHHHHHHHHHHhCCCCcEEEEe
Confidence 799999998764 1112 2357888743221 11 1245788899999999999863
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=1.2e-08 Score=88.27 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---ccc-CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~-~~ 214 (345)
.+...+++++||+|..+..+++.+|+.+|+++|.||++++.|++.+.- .+.|+++++++..+. +.. ..
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~--------~~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE--------FSDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG--------GTTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc--------ccccccchhHHHhhHHHHHHHcCC
Confidence 456789999999999999999999999999999999999999998742 246899999987763 222 35
Q ss_pred CcccEEEEcCCCCCC---CCC-C-cchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGK---VLP-Q-LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~---~p~-~-l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++|.|+.|+--... -+. . -...+++..+.+.|+|||.+++...
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 799999999743210 011 1 2345778899999999999886544
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.71 E-value=1.5e-08 Score=88.00 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=63.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||++|||+|.++..+... +..+|++||+|+..++.|+++.. +++++.+|..+. +++||+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~------------~~~~~~~D~~~l----~~~fD~ 110 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------------GVNFMVADVSEI----SGKYDT 110 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------------TSEEEECCGGGC----CCCEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc------------cccEEEEehhhc----CCcceE
Confidence 5789999999999998877764 45689999999999999999753 478999998763 578999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHH
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLK 244 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~ 244 (345)
|++|.+-+. .....+..|++.+.
T Consensus 111 Vi~NPPfg~--~~~~~D~~fl~~a~ 133 (197)
T d1ne2a_ 111 WIMNPPFGS--VVKHSDRAFIDKAF 133 (197)
T ss_dssp EEECCCC---------CHHHHHHHH
T ss_pred EEeCcccch--hhhhchHHHHHHHH
Confidence 999854321 11223456766543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.63 E-value=4.6e-08 Score=83.67 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=83.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~y 217 (345)
+..+||++.+|+|+++.+.+.+ +..+++.||.|+..++..+++...-.. .+....++..|..+++.. ...+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~-----~~~~~~~~~~d~~~~l~~~~~~~~f 116 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKC-----SSEQAEVINQSSLDFLKQPQNQPHF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC-----CTTTEEEECSCHHHHTTSCCSSCCE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcc-----cccccccccccccccccccccCCcc
Confidence 4678999999999999999975 557999999999999999988642221 245688899999988864 35679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHh--ccCCCcEEEEEecCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKD--RLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~--~L~pgGvlvvn~~~~ 260 (345)
|+|++|.+-.. . ...+.++.+.+ .|+++|++++-....
T Consensus 117 DlIFlDPPY~~----~-~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 117 DVVFLDPPFHF----N-LAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp EEEEECCCSSS----C-HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred cEEEechhHhh----h-hHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 99999854321 1 23456666654 599999999876543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.4e-09 Score=95.17 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=72.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCC----------------------CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTA----------------------TG 196 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~----------------------~~ 196 (345)
.++.+||+||||+|..+..+.+. ...+|+++|+++.+++.|+++........... ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35678999999999887666543 23589999999999999998864221100000 00
Q ss_pred CcE-EEEEccccc--cc-ccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 197 GVL-QVHIGDVFS--PS-EDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 197 ~rv-~v~~gDa~~--~l-~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.++ .....+... .+ ....++||+|++-. .-.+++... .-..+++++.+.|+|||.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred hhhhcccccccccccccccccCCcccEEeehh-hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 000 111111110 11 12467899998732 111122211 224688999999999999998766544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.53 E-value=2.7e-07 Score=82.00 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=69.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||+|.|.++..|++. ..+|++||+|+.+++..++.+.- .++++++++|+.++-- .....
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~---------~~n~~i~~~D~l~~~~-~~~~~ 86 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD---------HDNFQVLNKDILQFKF-PKNQS 86 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT---------CCSEEEECCCGGGCCC-CSSCC
T ss_pred CCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc---------ccchhhhhhhhhhccc-ccccc
Confidence 456789999999999999999986 46899999999999999988741 4789999999998721 22222
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..|+. .+|....|.=.+..+....-+..+++++
T Consensus 87 ~~vv~------NLPYnIss~il~~ll~~~~~~~~vlm~Q 119 (235)
T d1qama_ 87 YKIFG------NIPYNISTDIIRKIVFDSIADEIYLIVE 119 (235)
T ss_dssp CEEEE------ECCGGGHHHHHHHHHHSCCCSEEEEEEE
T ss_pred ceeee------eehhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 33443 3455544443333333333333445544
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.7e-07 Score=89.66 Aligned_cols=127 Identities=9% Similarity=-0.082 Sum_probs=77.3
Q ss_pred ccchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC--CCCCCCCcEEE
Q 038076 124 WTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE--KPTATGGVLQV 201 (345)
Q Consensus 124 l~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~--~~~~~~~rv~v 201 (345)
+.......|.....+.+..++|+||||.|.++..++..++..++++||++|.+++.|++........ ..........+
T Consensus 200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 3333444333333345678899999999999999998888789999999999999998643100000 00001122333
Q ss_pred -EEcccccc--cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 202 -HIGDVFSP--SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 202 -~~gDa~~~--l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|...- ....-...|+|++..+.. .+ .-...+.++.+.|||||.+++
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn~~f---~~--~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNNFLF---DE--DLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTTC---CH--HHHHHHHHHHTTCCTTCEEEE
T ss_pred eeeechhhccccccccccceEEEEecccC---ch--HHHHHHHHHHHhcCCCcEEEE
Confidence 23333221 111235678888753321 11 124678899999999999875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.49 E-value=1.2e-07 Score=84.79 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..-++|++||||.|..+..+++.+|+.++++.|+ |++++.+ . ...|++++.+|..+.+ ...|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~---------~~~ri~~~~gd~~~~~----p~~D 141 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P---------PLSGIEHVGGDMFASV----PQGD 141 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C---------CCTTEEEEECCTTTCC----CCEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C---------CCCCeEEecCCccccc----ccce
Confidence 4458899999999999999999999999999999 7776421 1 2578999999987642 3459
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++--.-+.. + .-.....++++++.|+|||.+++.=
T Consensus 142 ~~~l~~vLh~~-~-de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 142 AMILKAVCHNW-S-DEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEESSGGGS-C-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEehhhhhC-C-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99873222211 1 1234578999999999999877653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=2.2e-07 Score=88.10 Aligned_cols=112 Identities=10% Similarity=-0.084 Sum_probs=89.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCC--------CCCCCcEEEEEcccccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKP--------TATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~--------~~~~~rv~v~~gDa~~~l~ 211 (345)
++.+||+..+|+|..+...+...+..+|+++|+||..++.++++..+....+. ......+.+...|+..++.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 67899999999999888555545678999999999999999998754422110 0123468899999999988
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..+++||+|.+|.|... ..|++.+.+.++.||++.+....
T Consensus 125 ~~~~~fDvIDiDPfGs~--------~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDPFGSP--------MEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECCSSCC--------HHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCCCCCc--------HHHHHHHHHHhccCCEEEEEecC
Confidence 88899999999987742 46999999999999999987543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6.3e-08 Score=87.18 Aligned_cols=119 Identities=14% Similarity=0.021 Sum_probs=71.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC-----------------------CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT-----------------------AT 195 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~-----------------------~~ 195 (345)
.++.++|+||||+|..+....... ..+|+++|+++.+++.++++.........- ..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 357899999999997765444332 358999999999999999987532210000 00
Q ss_pred CCcEEEEEccccc-----ccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 196 GGVLQVHIGDVFS-----PSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 196 ~~rv~v~~gDa~~-----~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.....+...|..+ .......+||+|++-..- ..++... .-..+++++.+.|||||.+++.-..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l-~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL-EAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH-HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHH-HHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 0001223333322 111134679999873221 1222221 1245788999999999999876543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=3e-07 Score=82.13 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
..++|++||||.|..+..+++.+|+.++++.|+ |++++.+ . ..+|++++.+|..+- ...+|+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~-------~~~rv~~~~gD~f~~----~p~aD~ 141 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL------S-------GSNNLTYVGGDMFTS----IPNADA 141 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------C-------CBTTEEEEECCTTTC----CCCCSE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC------c-------ccCceEEEecCcccC----CCCCcE
Confidence 457899999999999999999999999999999 7776532 1 257999999998763 346899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCC---cEEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPN---GRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg---Gvlvvn 256 (345)
+++--.-+.. +.-...+.++++++.|+|| |.+++.
T Consensus 142 ~~l~~vLHdw--~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 142 VLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp EEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred EEEEeecccC--ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 9873222111 1123457899999999998 555443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=8.4e-07 Score=78.88 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=69.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
..++|++||||.|..+..+++.+|+.+++++|+- .+++.+ ...+|++...+|..+-+ + ..|+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------------~~~~r~~~~~~d~~~~~---P-~ad~ 142 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDA-------------PSYPGVEHVGGDMFVSI---P-KADA 142 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTC-------------CCCTTEEEEECCTTTCC---C-CCSC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-Hhhhhc-------------ccCCceEEecccccccC---C-Ccce
Confidence 3578999999999999999999999999999994 444321 12578999999987643 2 3455
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+++-..-... +.-.....++++++.|+|||.+++.
T Consensus 143 ~~l~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 143 VFMKWICHDW--SDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp EECSSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred EEEEEEeecC--CHHHHHHHHHHHHHhcCCCceEEEE
Confidence 5542111111 1124567899999999999987775
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.20 E-value=2e-07 Score=83.35 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=71.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||+|.|.++..|++. +.+|++||+|+.+++.+++.+.. .++++++++|+.++ .-....+
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~---------~~n~~ii~~D~l~~-~~~~~~~ 94 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL---------NTRVTLIHQDILQF-QFPNKQR 94 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT---------CSEEEECCSCCTTT-TCCCSSE
T ss_pred CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh---------ccchhhhhhhhhcc-cccccee
Confidence 346678999999999999999986 46999999999999988877642 46899999999986 3334555
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.|+. .+|.+..|.=.+..+.+.--.+.++++
T Consensus 95 ~~vv~------NLPY~Ist~il~~~l~~~~~~~~v~m~ 126 (245)
T d1yuba_ 95 YKIVG------NIPYHLSTQIIKKVVFESRASDIYLIV 126 (245)
T ss_dssp EEEEE------ECCSSSCHHHHHHHHHHCCCEEEEEEE
T ss_pred eeEee------eeehhhhHHHHHHHhhhchhhhhhhhh
Confidence 66664 345555555455544432222334444
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.14 E-value=2.4e-06 Score=78.68 Aligned_cols=111 Identities=12% Similarity=-0.004 Sum_probs=80.4
Q ss_pred CCCCEEEEeecccHHHHHHHHh-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL-----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~-----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
++.+|++.|||+|++...+.++ .+..++.++|+|+.++++|+....+. +....+.++|.... ...
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~--~~~ 186 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------RQKMTLLHQDGLAN--LLV 186 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------TCCCEEEESCTTSC--CCC
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh--------hhhhhhhccccccc--ccc
Confidence 4568999999999999887653 23468999999999999999776543 34567888887654 246
Q ss_pred CcccEEEEcCCCCCC-------------CC-CCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGK-------------VL-PQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~-------------~p-~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.+||+|+.+.+-+.. .. ......-|++.+.+.|+|||.+++-+...
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 789999998653210 00 01123458999999999999887766543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.2e-05 Score=72.88 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=70.9
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+...|++||.|.|.++..|++. +.+|++||+|+.+++..++.|.... ...+++++++|+.++ ....+
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~------~~~~~~~i~~D~l~~---~~~~~ 87 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP------VASKLQVLVGDVLKT---DLPFF 87 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST------TGGGEEEEESCTTTS---CCCCC
T ss_pred CCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhc------cccchhhhHHHHhhh---hhhhh
Confidence 345678999999999999999987 3699999999999999998885322 246899999999886 23445
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvvn 256 (345)
+.||. .+|....|.=.+..+...-... .+++++
T Consensus 88 ~~vV~------NLPY~Iss~il~~~~~~~~~~~~~v~m~Q 121 (278)
T d1zq9a1 88 DTCVA------NLPYQISSPFVFKLLLHRPFFRCAILMFQ 121 (278)
T ss_dssp SEEEE------ECCGGGHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred hhhhc------chHHHHHHHHHHHHHhhCCccceeeEeec
Confidence 66664 3454444433333333333333 455554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.04 E-value=9.4e-06 Score=69.39 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCCCCEEEEeecccH----HHHHHHHhC----CCCEEEEEECCHHHHHHHH------------------HhcCCCCCCCC
Q 038076 139 VPNGPIAIYGLGGGT----AAHLMLDLW----PSLKLEGWEIDEILIDKVR------------------DYFGLSDLEKP 192 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~----~~~~l~~~~----p~~~v~~VEidp~vi~~A~------------------~~f~~~~~~~~ 192 (345)
.++-+|+..|||+|- ++..+.+.. ...+|++.|||+..++.|+ +||.-......
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345689999999996 455555431 2368999999999999987 34421110000
Q ss_pred ------CCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 193 ------TATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 193 ------~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.....+++....+.........++||+|+|=-.- .++. .-...+.++.+.+.|+|||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVL-iYf~-~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVM-IYFD-KTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSG-GGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhH-HhcC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 0000112222222222111134789999982100 0111 11345789999999999999873
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.04 E-value=3.4e-06 Score=74.61 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred CCCCCEEEEeecccHHHHHHHH----hCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLD----LWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~----~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~ 212 (345)
.+|++||+||.+.|..+.++.. ..+..+|+++|||+....... ...++++++.+|..+. +..
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------------~~~~~I~~i~gDs~~~~~~~~ 146 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------------SDMENITLHQGDCSDLTTFEH 146 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------------GGCTTEEEEECCSSCSGGGGG
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------------ccccceeeeecccccHHHHHH
Confidence 3689999999988866655543 235789999999985433211 2357899999998642 332
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
....+|.||+|.... . .+ ...++ .....|++||++++-
T Consensus 147 l~~~~~dlIfID~~H~-~--~~-v~~~~--~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 147 LREMAHPLIFIDNAHA-N--TF-NIMKW--AVDHLLEEGDYFIIE 185 (232)
T ss_dssp GSSSCSSEEEEESSCS-S--HH-HHHHH--HHHHTCCTTCEEEEC
T ss_pred HHhcCCCEEEEcCCcc-h--HH-HHHHH--HHhcccCcCCEEEEE
Confidence 345689999996432 1 11 11222 245789999998863
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.1e-05 Score=70.09 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=87.7
Q ss_pred ccchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH---hcCCCCCCCCCCCCCcEE
Q 038076 124 WTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD---YFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 124 l~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~---~f~~~~~~~~~~~~~rv~ 200 (345)
+..+.+|.+..++.+ ++.+++|||+|+|--+.-++-.+|+.+++.||-+..=+...++ -+++ .+++
T Consensus 50 ~~rHi~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L----------~nv~ 118 (207)
T d1jsxa_ 50 LVRHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----------ENIE 118 (207)
T ss_dssp HHHHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----------SSEE
T ss_pred HHHHhcchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC----------ccee
Confidence 445566776666665 4578999999999777777767899999999999987776554 3333 4699
Q ss_pred EEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 201 v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++++++.++. ...+||+|++=++.+ ...+++.++..++++|.++.--+
T Consensus 119 v~~~R~E~~~--~~~~fD~V~sRA~~~--------~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 119 PVQSRVEEFP--SEPPFDGVISRAFAS--------LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp EEECCTTTSC--CCSCEEEEECSCSSS--------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred eeccchhhhc--cccccceehhhhhcC--------HHHHHHHHHHhcCCCcEEEEECC
Confidence 9999998863 356899999877653 24678888999999999886655
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.01 E-value=3.8e-06 Score=72.16 Aligned_cols=112 Identities=16% Similarity=0.028 Sum_probs=77.9
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS 208 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~ 208 (345)
+.|..+....+..+||+.|||+|.+...+.+..+ ...+.++|+||..+++ ..+..++.+|...
T Consensus 9 ~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------------~~~~~~~~~~~~~ 72 (223)
T d2ih2a1 9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------------PPWAEGILADFLL 72 (223)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------------CTTEEEEESCGGG
T ss_pred HHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------------cccceeeeeehhc
Confidence 3444443335678999999999999888876544 5789999999864322 2356888999877
Q ss_pred ccccCCCcccEEEEcCCCCCC-----CC-------------------CC-cchHHHHHHHHhccCCCcEEEEEecC
Q 038076 209 PSEDASGRYAGIVVDLFSEGK-----VL-------------------PQ-LEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~-----~p-------------------~~-l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+. ...+||+|+.+..-... .+ .. -....|++.+.+.|+|||.+++-+..
T Consensus 73 ~~--~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 73 WE--PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CC--CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cc--cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 53 45889999987643210 00 00 12356888999999999998776653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=1.6e-05 Score=73.89 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=79.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+|+++-||.|+++..|++. ..+|++||+++..++.|++...... -.+++++.+|..+.+.. ...
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~-------i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG-------LQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCTTSCCSSSGGGTT
T ss_pred CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcc-------cccceeeecchhhhhhhhhhhhc
Confidence 35678999999999999998864 5799999999999999999876544 35799999999988754 357
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++|.+..+. .+.++.+.+ ++|.=++.+.|.
T Consensus 282 ~~d~vilDPPR~G~-------~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 282 GFDKVLLDPARAGA-------AGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CCSEEEECCCTTCC-------HHHHHHHHH-HCCSEEEEEESC
T ss_pred cCceEEeCCCCccH-------HHHHHHHHH-cCCCEEEEEeCC
Confidence 79999999765431 246666654 467766666554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=3.2e-06 Score=75.70 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=52.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
..+...|++||+|.|.++..|++. ..++++||+|+.+++..++.+.. .++++++++|+.++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~---------~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL---------GPKLTIYQQDAMTF 79 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT---------GGGEEEECSCGGGC
T ss_pred CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh---------ccchhHHhhhhhhh
Confidence 345789999999999999999975 46899999999999999886642 46899999999986
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.8e-05 Score=67.06 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=89.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
+.+..+||+||++.|+....+.+. .+...+.++|+.|. .+ -+++.++.+|..+.-..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~-------i~~~~~~~~d~~~~~~~~~~~ 81 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP-------IVGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC-------CTTEEEEESCTTSHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc-------cCCceEeecccccchhhhhhh
Confidence 356678999999999999988875 44589999998661 11 35688999998663211
Q ss_pred ---CCCcccEEEEcCCCCCC-CC--CCc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 213 ---ASGRYAGIVVDLFSEGK-VL--PQL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 213 ---~~~~yD~Ii~D~f~~~~-~p--~~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
...++|+|+.|.-...+ .. .+. .....+..+.+.|++||.+++=+..... .
T Consensus 82 ~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-------------------~ 142 (180)
T d1ej0a_ 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-------------------F 142 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-------------------H
T ss_pred hhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-------------------H
Confidence 46789999999633211 11 111 1223455678889999999998886432 5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 038076 283 NSAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~~~~ 301 (345)
..+...|+..|. .|.+++
T Consensus 143 ~~l~~~l~~~F~-~V~~~K 160 (180)
T d1ej0a_ 143 DEYLREIRSLFT-KVKVRK 160 (180)
T ss_dssp HHHHHHHHHHEE-EEEEEC
T ss_pred HHHHHHHHhhcC-EEEEEC
Confidence 678889999999 677554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=2.8e-05 Score=70.44 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=83.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++.+|.|+=+.++++...+.+|+++|+++.-++..++.+.--. -..+.+...|....-.....+||
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g-------~~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-------MKATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-------CCCEEEECCTTCTHHHHTTCCEE
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc-------ccceeeeccccccchhccccccc
Confidence 45679999999999888888877777899999999999988877653211 12344444444332222467899
Q ss_pred EEEEcCCCCCC--C---CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGK--V---LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~--~---p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.|++|+...+. + |.. -...+.+..+.+.|+|||.++..+-+...
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 99999987642 1 111 12456788888999999999987776665
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.85 E-value=2.9e-05 Score=65.86 Aligned_cols=109 Identities=21% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----~~ 214 (345)
.+...+++..+|+|..++.+++. +.+|.++|.||++++.|++.. ++++++++++..++-.. ..
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~-----------~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH-----------LPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC-----------CTTEEEEESCGGGHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc-----------ccceeEeehHHHHHHHHHHHcCC
Confidence 45678999999999999999985 569999999999999998853 46899999987764321 34
Q ss_pred CcccEEEEcCCCCCC---CCCC-c-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGK---VLPQ-L-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~---~p~~-l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+++|.|+.|+--... -+.. + ...+.++...+.|++||.+++.....
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 789999999833211 1111 1 22346788899999999998777643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.76 E-value=0.0001 Score=65.22 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=90.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+|++||||.|..+..+....+...+.++++=-.. ...|. ....+..+-++...++...++ .+++.
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~-------~e~P~-~~~~~~~ni~~~~~~~dv~~l--~~~~~ 133 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG-------HEEPI-PMSTYGWNLVRLQSGVDVFFI--PPERC 133 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT-------SCCCC-CCCSTTGGGEEEECSCCTTTS--CCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc-------ccCCc-cccccccccccchhhhhHHhc--CCCcC
Confidence 456678999999999999998876666788888872110 00110 001111223455555544443 56899
Q ss_pred cEEEEcCCCCCCCC--CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC
Q 038076 218 AGIVVDLFSEGKVL--PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295 (345)
Q Consensus 218 D~Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~ 295 (345)
|+|+||.-.....+ .+.-+.+.++.+.+.|+|||-+++=+..+.. ....+.+..|+..|.+
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~-----------------~~v~e~le~lq~~fgg 196 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM-----------------SSVIEKMEALQRKHGG 196 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS-----------------HHHHHHHHHHHHHHCC
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC-----------------hHHHHHHHHHHHHhCC
Confidence 99999984321111 2344567788888999999999999887654 3466888899999985
Q ss_pred CEEEEEecC
Q 038076 296 KVSWKRMPE 304 (345)
Q Consensus 296 ~v~~~~~~~ 304 (345)
..+ +.|-
T Consensus 197 -~lV-R~P~ 203 (257)
T d2p41a1 197 -ALV-RNPL 203 (257)
T ss_dssp -EEE-CCTT
T ss_pred -eeE-cCCC
Confidence 333 4564
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=0.00032 Score=61.76 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=88.1
Q ss_pred ccchHHHHHhhccccC--CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH---HHHhcCCCCCCCCCCCCCc
Q 038076 124 WTGSYWDEFVSLPAIV--PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK---VRDYFGLSDLEKPTATGGV 198 (345)
Q Consensus 124 l~~~Y~~~~~~l~~~~--~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~---A~~~f~~~~~~~~~~~~~r 198 (345)
+..+..|....++++. +..+++|||.|+|--+.-+.-.+|+.+++.||-+..=++. +.+.+++. +
T Consensus 52 ~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~----------n 121 (239)
T d1xdza_ 52 YLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----------N 121 (239)
T ss_dssp HHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----------S
T ss_pred HHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC----------C
Confidence 3445566666566553 4678999999999777776666899999999999876665 44555553 5
Q ss_pred EEEEEccccccccc--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 199 LQVHIGDVFSPSED--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 199 v~v~~gDa~~~l~~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+.++++.+.++-.. ..++||+|+.=++.+ ...+++.+...++++|.+++--+.
T Consensus 122 ~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~--------l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 122 TTFCHDRAETFGQRKDVRESYDIVTARAVAR--------LSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp EEEEESCHHHHTTCTTTTTCEEEEEEECCSC--------HHHHHHHHGGGEEEEEEEEEEECC
T ss_pred cEEEeehhhhccccccccccceEEEEhhhhC--------HHHHHHHHhhhcccCCEEEEECCC
Confidence 88999988876432 357899999977764 245788899999999998866553
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00024 Score=64.34 Aligned_cols=135 Identities=12% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||++++|.|+=+.++... .+..+|+++|+++.-++..++++.--. -.++.+...|+..+-.. ..+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-------~~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-------VSCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCGGGSCTTCGGGT
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-------ccceeeeehhhhhhcccccccc
Confidence 35678999999999877777654 456899999999999998887764221 34689999999886433 236
Q ss_pred cccEEEEcCCCCCC-----CCCC-------------c--chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCC
Q 038076 216 RYAGIVVDLFSEGK-----VLPQ-------------L--EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKS 275 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~-----~p~~-------------l--~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~ 275 (345)
+||.|++|++..+. .|.. + ...+.+..+. .|+|||.++..+-+....
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~------------ 232 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE------------ 232 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG------------
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh------------
Confidence 79999999986542 1111 0 0122333344 479999988777666651
Q ss_pred ccchHHHHHHHHHHHHHCCCCEE
Q 038076 276 MNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 276 ~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
.-..+++.+-+.+++.+.
T Consensus 233 -----ENe~vV~~~L~~~~~~~~ 250 (293)
T d2b9ea1 233 -----ENEDVVRDALQQNPGAFR 250 (293)
T ss_dssp -----GTHHHHHHHHTTSTTTEE
T ss_pred -----HhHHHHHHHHHhCCCCEE
Confidence 134566666666675443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.70 E-value=9.9e-05 Score=67.62 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=84.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++.+|.|+=+..+..... ...|+++|+++.-++..++...-.. -.++.+...|+..+ ......|
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-------~~~i~~~~~d~~~~-~~~~~~f 186 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-------VLNVILFHSSSLHI-GELNVEF 186 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-------CCSEEEESSCGGGG-GGGCCCE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-------hhcccccccccccc-ccccccc
Confidence 3567899999999987777776543 5899999999999988776553111 34677888888875 4457889
Q ss_pred cEEEEcCCCCCC--C---CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK--V---LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~--~---p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|+...+. . |.. -...+.+..+.+.|+|||.++..+-+...
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 999999977542 1 211 12456677888899999999887776665
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.49 E-value=0.00013 Score=69.24 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=93.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-------------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD 205 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD 205 (345)
.+..+|++-.||+|.+...+.++.. ...+.++|+|+....+|+-.+-+... ..+..++..+|
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~-----~~~~~~i~~~d 235 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-----GTDRSPIVCED 235 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-----CSSCCSEEECC
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC-----ccccceeecCc
Confidence 3468999999999999887765421 13599999999999999876644321 13455678888
Q ss_pred cccccccCCCcccEEEEcCCCCCC-------------CCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCC
Q 038076 206 VFSPSEDASGRYAGIVVDLFSEGK-------------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAAR 272 (345)
Q Consensus 206 a~~~l~~~~~~yD~Ii~D~f~~~~-------------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~ 272 (345)
.... ....+||+|+.+.+-+.. .+..-....|++.+.+.|++||.+++-+....-. .+
T Consensus 236 ~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~----~~--- 306 (425)
T d2okca1 236 SLEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF----EA--- 306 (425)
T ss_dssp TTTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH----CS---
T ss_pred hhhh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhh----hh---
Confidence 7653 356789999997644321 0111123569999999999999887766532210 00
Q ss_pred CCCccchHHHHHHHHHHHHHCCCCEEEEEecC
Q 038076 273 PKSMNDVWMHNSAIRALSEAFPGKVSWKRMPE 304 (345)
Q Consensus 273 ~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~ 304 (345)
...+.+-+.|.+.+. ...+..+|.
T Consensus 307 -------~~~~~iR~~Ll~~~~-i~aIi~LP~ 330 (425)
T d2okca1 307 -------GAGETIRKRLLQDFN-LHTILRLPT 330 (425)
T ss_dssp -------THHHHHHHHHHHHEE-EEEEEECCS
T ss_pred -------hhHHHHHHHHHHhcc-hhHhhcCCc
Confidence 123455556666654 345556663
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.34 E-value=0.00054 Score=56.13 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=67.2
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|++||+| |+++++.|.+.....+|+++|.|++..+.|++.-... ....+... ......|+
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~-------------~~~~~~~~---~~~~~~dl 65 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID-------------EGTTSIAK---VEDFSPDF 65 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS-------------EEESCGGG---GGGTCCSE
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch-------------hhhhhhhh---hhcccccc
Confidence 469999999 8899999988766789999999999999998853211 11111111 12357899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++.. |+ -...+.+..+...++++-++ +.+.+...
T Consensus 66 Iila~------p~-~~~~~vl~~l~~~~~~~~ii-~d~~s~k~ 100 (171)
T d2g5ca2 66 VMLSS------PV-RTFREIAKKLSYILSEDATV-TDQGSVKG 100 (171)
T ss_dssp EEECS------CH-HHHHHHHHHHHHHSCTTCEE-EECCSCCT
T ss_pred ccccC------Cc-hhhhhhhhhhhccccccccc-cccccccH
Confidence 99843 22 24567888999999877555 45554443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=0.00018 Score=59.97 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=63.5
Q ss_pred cCCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---c-
Q 038076 138 IVPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---D- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~- 212 (345)
..+..+||++|+| .|..+.++++.....+|.++|.+++-.+.|++. +... -+.....|..+..+ +
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~---------vi~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GADL---------TLNRRETSVEERRKAIMDI 95 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCSE---------EEETTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc-cceE---------EEeccccchHHHHHHHHHh
Confidence 3456899999987 467777888776545899999999999999875 3211 01001112222211 1
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+..+|+||-.... .+.++.+.+.|+++|.+++
T Consensus 96 ~~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 96 THGRGADFILEATGD----------SRALLEGSELLRRGGFYSV 129 (182)
T ss_dssp TTTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEE
T ss_pred hCCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEE
Confidence 24569998843322 1357888899999999863
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.28 E-value=9e-05 Score=65.81 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-CCC-CCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-LEK-PTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~-~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.+||+.=+|-|..+..+... +.+|+++|-+|.+..+.++.+.-.. ... ...--.|++++++|+.+|+.+..+.||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 458999999999999988876 5799999999999887765442100 000 000023899999999999988788899
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
+|++|.
T Consensus 167 vIYlDP 172 (250)
T d2oyra1 167 VVYLDP 172 (250)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999996
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.00014 Score=66.78 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=51.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
++..|++||.|.|.++..+++.....+++++|+|+...+.-++.|. +++++++++|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----------CCCcEEEeCchhhc
Confidence 4567999999999999999976434699999999999999988774 46799999999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.16 E-value=0.00018 Score=59.97 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||++|+|+ |..+..+++.....+|.++|.+++-.+.|+++ +... -+.....|..+.+.+ .++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga~~---------~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GATD---------ILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TCSE---------EECGGGSCHHHHHHHHTTTS
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh-Cccc---------cccccchhHHHHHHHHhhcc
Confidence 5678999999986 78888888876556899999999999999884 3221 000001111121211 345
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+||--... .+.++++.+.++|+|.+++
T Consensus 96 G~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 96 GVDRVIMAGGG----------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp CEEEEEECSSC----------TTHHHHHHHHEEEEEEEEE
T ss_pred CcceEEEccCC----------HHHHHHHHHHHhcCCEEEE
Confidence 69998853322 2357788899999999875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.15 E-value=0.00048 Score=57.28 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+|++||+| .|..+...++.. +.+|++.|.+++.++..+..++. +++....+-.. +++.-...|
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-----------~~~~~~~~~~~-l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-----------RVELLYSNSAE-IETAVAEAD 97 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-----------GSEEEECCHHH-HHHHHHTCS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-----------cceeehhhhhh-HHHhhccCc
Confidence 68999999999 566555555554 68999999999999988887742 24444443322 333346789
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||.-+.-++...+.|.|+|.+ +.+|||.+++ .+..
T Consensus 98 ivI~aalipG~~aP~lIt~~mv----~~Mk~GSVIV-Dvai 133 (168)
T d1pjca1 98 LLIGAVLVPGRRAPILVPASLV----EQMRTGSVIV-DVAV 133 (168)
T ss_dssp EEEECCCCTTSSCCCCBCHHHH----TTSCTTCEEE-ETTC
T ss_pred EEEEeeecCCcccCeeecHHHH----hhcCCCcEEE-Eeec
Confidence 9999877766667889988765 5678888775 5443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.07 E-value=0.0005 Score=56.95 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-C
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-~ 213 (345)
.+..+|+++|+|+ |.++..+++.....+|.++|.++.-.+.++++ +.. +++. .|..+.+.+ +
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~------------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT------------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCe------------EEEeCCCcCHHHHHHHHc
Confidence 4567899999873 44555666666667899999999999999885 422 1222 233333322 4
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+..+|+||-..- +.+.++.+.+.++|+|.+++
T Consensus 94 ~gg~D~vid~~G----------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 94 DGGVNFALESTG----------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp TSCEEEEEECSC----------CHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCcEEEEcCC----------cHHHHHHHHhcccCceEEEE
Confidence 568999885321 24678889999999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.06 E-value=0.0013 Score=55.59 Aligned_cols=106 Identities=10% Similarity=0.003 Sum_probs=70.7
Q ss_pred cCCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc-
Q 038076 138 IVPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~- 212 (345)
+.+..+||++|+|+ |..+..+++.....+|.++|.++.-.+.|+++-. . .++. .|..+.+.+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-~------------~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-E------------IADLSLDTPLHEQIAAL 89 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-E------------EEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-c------------EEEeCCCcCHHHHHHHH
Confidence 35678999999986 6677777777777899999999999999998632 1 1221 122222221
Q ss_pred -CCCcccEEEEcCCCCC-CCC----CCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEG-KVL----PQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~-~~p----~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.+..+|++|-..-... ..+ ...-+.+.++.+.+.++|+|.+++-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 3567999884332111 111 1223568999999999999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.97 E-value=0.0037 Score=50.85 Aligned_cols=94 Identities=7% Similarity=-0.035 Sum_probs=63.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc----cc---cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV----FS---PS 210 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa----~~---~l 210 (345)
.+..+|+++|+| .|.++.++++.. +.+|.++|.+++-.+.|+++.. . ..+...+. .+ .+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga-~-----------~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA-D-----------VTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S-----------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC-c-----------EEEeccccccccchhhhhh
Confidence 456789999987 566666777765 4799999999999999999643 1 11221111 11 11
Q ss_pred c-cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 211 E-DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 211 ~-~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
. ..+..+|+||-.. . ..+.++.+.+.|+++|.+++
T Consensus 92 ~~~~g~g~D~vid~~-g---------~~~~~~~a~~~~~~~G~iv~ 127 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCS-G---------NEKCITIGINITRTGGTLML 127 (170)
T ss_dssp HHHSSSCCSEEEECS-C---------CHHHHHHHHHHSCTTCEEEE
T ss_pred hcccccCCceeeecC-C---------ChHHHHHHHHHHhcCCceEE
Confidence 1 1356799887432 1 13568888899999999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0011 Score=54.53 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=63.7
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc------cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP------SE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~------l~ 211 (345)
.+..+|+++|+| .|..+..+++.....+|.++|.++.-.+.|+++ +.. .++..+-.+. +.
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga~------------~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GAD------------LVLQISKESPQEIARKVE 91 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS------------EEEECSSCCHHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CCc------------cccccccccccccccccc
Confidence 456789999987 455666667766656999999999999999885 322 1121111111 11
Q ss_pred -cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 212 -DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 212 -~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..+..+|+||--. . ..+.++.+.+.++++|.+++-
T Consensus 92 ~~~g~g~Dvvid~~-G---------~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 92 GQLGCKPEVTIECT-G---------AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHTSCCSEEEECS-C---------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ccCCCCceEEEecc-C---------CchhHHHHHHHhcCCCEEEEE
Confidence 1356799988522 1 145788999999999998753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.88 E-value=0.019 Score=46.25 Aligned_cols=90 Identities=19% Similarity=0.084 Sum_probs=62.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+++++.+.+. +.+|+++|.+++.++.+++.-... ... |-.+ .-+..|+|
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~-------------~~~-~~~~----~~~~~DiI 61 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVD-------------EAG-QDLS----LLQTAKII 61 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCS-------------EEE-SCGG----GGTTCSEE
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccc-------------eee-eecc----cccccccc
Confidence 68999999 88888888763 679999999999999887742111 111 1112 23678999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+-+ |.. ...+.++++...|+++-++ +++.+.
T Consensus 62 ilav------p~~-~~~~vl~~l~~~l~~~~iv-~~~~s~ 93 (165)
T d2f1ka2 62 FLCT------PIQ-LILPTLEKLIPHLSPTAIV-TDVASV 93 (165)
T ss_dssp EECS------CHH-HHHHHHHHHGGGSCTTCEE-EECCSC
T ss_pred cccC------cHh-hhhhhhhhhhhhcccccce-eecccc
Confidence 9843 222 4567888998888887765 566543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0012 Score=64.29 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=78.7
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhC----CC--------------CEEEEEECCHHHHHHHHHhcCCCCCCC
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLW----PS--------------LKLEGWEIDEILIDKVRDYFGLSDLEK 191 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~----p~--------------~~v~~VEidp~vi~~A~~~f~~~~~~~ 191 (345)
+.|..+....+..+|++-.||+|.+...+.++. .. ..+.++|+|+...++|+-.+-+.....
T Consensus 154 ~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~ 233 (524)
T d2ar0a1 154 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 233 (524)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc
Confidence 444433332345689999999999987665531 11 268999999999999997664432110
Q ss_pred CCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCC----------CCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 192 PTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK----------VLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 192 ~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~----------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.....-.+..+|...--.....+||+|+.+.+-+.. .+..-...-|++.+.+.|+|||.+++-+..
T Consensus 234 --~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 234 --NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp --BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred --cccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 001112234444332111245789999997644211 112223345999999999999998876653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.78 E-value=0.00062 Score=55.59 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=60.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---ccccccccCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~~~ 214 (345)
.+..+|+++|+| .|.++..+++.. +.+|.++|.+++-.+.++++- .. +++.. |..+.+....
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~G-a~------------~~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLG-AS------------LTVNARQEDPVEAIQRDI 91 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT-CS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccC-cc------------ccccccchhHHHHHHHhh
Confidence 456789999987 456666777766 489999999999999999853 22 12221 2222222222
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|.++.+... .+.++.+.+.|+++|.+++
T Consensus 92 ~g~~~~i~~~~~----------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 92 GGAHGVLVTAVS----------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp SSEEEEEECCSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred cCCccccccccc----------chHHHHHHHHhcCCcEEEE
Confidence 345555544221 3568888899999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.68 E-value=0.0012 Score=54.26 Aligned_cols=95 Identities=21% Similarity=0.143 Sum_probs=64.0
Q ss_pred cCCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--c-ccccccc-
Q 038076 138 IVPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--D-VFSPSED- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--D-a~~~l~~- 212 (345)
..+..+||++|+|+ |..+..+++.....+|.++|.+++-.+.++++.. . .++.. | ....++.
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-~------------~~i~~~~~~~~~~~~~~ 96 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-D------------HVVDARRDPVKQVMELT 96 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-S------------EEEETTSCHHHHHHHHT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-c------------eeecCcccHHHHHHHhh
Confidence 34567899999874 4555566666666899999999999999998643 1 12222 1 1122222
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+||-...+ .+.++...+.|+++|.+++
T Consensus 97 ~~~g~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 97 RGRGVNVAMDFVGS----------QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp TTCCEEEEEESSCC----------HHHHHHGGGGEEEEEEEEE
T ss_pred CCCCceEEEEecCc----------chHHHHHHHHHhCCCEEEE
Confidence 34669988853322 3568888999999999885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.0012 Score=54.14 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+|+++|+| .|.++..+++.. +.+|.++|.+++-.+.|+++ +.. ..+...+--++.+...+.+
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l-Ga~-----------~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-GAD-----------HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-TCS-----------EEEEGGGTSCHHHHSCSCE
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc-CCc-----------EEeeccchHHHHHhhhccc
Confidence 467899999987 566666776654 57999999999999999886 322 1111122223444456789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|+......... .++.+.+.|+|+|.+++
T Consensus 93 d~vi~~~~~~~~~--------~~~~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 93 DLIVVCASSLTDI--------DFNIMPKAMKVGGRIVS 122 (168)
T ss_dssp EEEEECCSCSTTC--------CTTTGGGGEEEEEEEEE
T ss_pred ceEEEEecCCccc--------hHHHHHHHhhccceEEE
Confidence 9988533222111 13345688999998864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.42 E-value=0.012 Score=48.52 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---cc-ccc-cc-c
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GD-VFS-PS-E 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gD-a~~-~l-~ 211 (345)
.+..+|+++|+|+ |..+.++.+.....+|.++|++++-.+.|+++ +... ++. .| ... .. .
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga~~------------~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GATD------------CLNPRELDKPVQDVITE 93 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CCCc------------ccCCccchhhhhhhHhh
Confidence 4568899999986 78888888887767999999999999999985 3221 111 11 111 11 1
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEEE
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMVN 256 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvvn 256 (345)
.....+|++|--. . ..+.++.+.+.|+++ |.+++-
T Consensus 94 ~~~~G~d~vie~~-G---------~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 94 LTAGGVDYSLDCA-G---------TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHTSCBSEEEESS-C---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhcCCCcEEEEec-c---------cchHHHHHHHHhhcCCeEEEec
Confidence 1356799998422 1 246788999999996 998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.38 E-value=0.0036 Score=50.99 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 139 VPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
.+..+|+++|++ .|.++..+++.....+|.++|.+++-.+.++++- .. .++..+-.++.+.
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G-a~------------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG-AD------------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT-CS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC-Cc------------eeeccCCcCHHHHHHHH
Confidence 466789999963 4555666666666689999999999999998853 21 1222222222221
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.++.+|+|+-... ..+.++.+.+.++|+|.+++
T Consensus 93 ~~~~~~d~vid~~g----------~~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 93 TESKGVDAVIDLNN----------SEKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp TTTSCEEEEEESCC----------CHHHHTTGGGGEEEEEEEEE
T ss_pred hhcccchhhhcccc----------cchHHHhhhhhcccCCEEEE
Confidence 3567998885321 13566777899999999864
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.23 E-value=0.0042 Score=51.23 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=60.6
Q ss_pred cCCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc--ccc-ccC
Q 038076 138 IVPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF--SPS-EDA 213 (345)
Q Consensus 138 ~~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~--~~l-~~~ 213 (345)
+.+..+||++|+|+ |..+..+++.....+|.++|++++-.+.|+++-. .. -++....|.. +.. ...
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa-~~---------~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-TE---------CLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-SE---------EECGGGCSSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC-cE---------EEcCCCchhHHHHHHHHhc
Confidence 35667899999874 4555566666666899999999999999998632 21 1111112211 111 124
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccC-CCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM-PNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~-pgGvlvv 255 (345)
+..+|+||-.... .+.++.....+. ++|.+++
T Consensus 95 ~~G~d~vid~~g~----------~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 95 NGGVDYAVECAGR----------IETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp TSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred CCCCcEEEEcCCC----------chHHHHHHHHHHHhcCceEE
Confidence 5689999964322 345566666664 5687654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.01 E-value=0.0098 Score=49.71 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=66.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc----cc---
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS----PS--- 210 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~----~l--- 210 (345)
.+|.+|++||+| .|..+....... +.+|++.|+++...+..++.++-.-.. ........+--.+.+.+ |.
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~-~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITV-DDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC------------------------CCH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEE-eccccccccccccchhhcCHHHHHHH
Confidence 378999999999 555555555444 689999999999999988876411000 00000001111111111 11
Q ss_pred ----ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 211 ----EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 211 ----~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
...-...|+||.-+.-++...+.|.+++.+ +.+|||.+++ .+.
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv----~~Mk~GSVIV-Dva 151 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMV----TKMKPGSVII-DLA 151 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHH----TTSCTTCEEE-ETT
T ss_pred HHHHHHHHHhhhhheeeeecCCcccceeehHHHH----HhcCCCcEEE-EEe
Confidence 111257999998877776667778887755 5688888875 443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.017 Score=46.78 Aligned_cols=94 Identities=10% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+|+++|+| -|.++.++++.. +.++.+++.+++-.+.+++.-. . .++.-+--.......+.+
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGa-d------------~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGA-D------------EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S------------EEEETTCHHHHHTTTTCE
T ss_pred CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCC-c------------EEEECchhhHHHHhcCCC
Confidence 567899999986 466777777765 5778899999998899887532 1 122211111222345689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+++-..... ..++...+.|+++|.+++-
T Consensus 95 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 95 DFILNTVAAP----------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred ceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence 9988654322 1256777899999998753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.70 E-value=0.012 Score=47.87 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+++.+||+| |..++..|.+ .+.+|+++|.+++-++..++.-.................+..|..+. -+..|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~aD~ 75 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADV 75 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSE
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH----hcCCCE
Confidence 689999999 3445555554 35799999999999988776432111000000001111112222222 256899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++-.. .....+.+++++.+|+++-+++
T Consensus 76 iii~v~-------~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 76 ILIVVP-------AIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp EEECSC-------GGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEEEEc-------hhHHHHHHHHhhhccCCCCEEE
Confidence 998432 2256789999999999988765
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.67 E-value=0.034 Score=45.56 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=38.1
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.+..+|+++|+|+ |..+..+.+.....+|.++|++++-+++|+++-.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 4567899999874 5566677777766899999999999999999754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.66 E-value=0.01 Score=46.21 Aligned_cols=90 Identities=21% Similarity=0.073 Sum_probs=57.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCcc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRY 217 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~y 217 (345)
+|+++|+| |-.+++.|.+ .+..|++||.||+.++.+++.++ ..+++||+.+. ++. .-+..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~~~~~~~~~~~~-------------~~vi~Gd~~~~~~l~~~~i~~a 66 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAEID-------------ALVINGDCTKIKTLEDAGIEDA 66 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCS-------------SEEEESCTTSHHHHHHTTTTTC
T ss_pred EEEEECCCHHHHHHHHHHHH--CCCCcceecCChhhhhhhhhhhh-------------hhhccCcccchhhhhhcChhhh
Confidence 68899886 3344445444 35799999999999998777553 56899999863 333 34678
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|.++.-..+. ...-+.....+.+.+.-+++
T Consensus 67 ~~vv~~t~~d-------~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 67 DMYIAVTGKE-------EVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp SEEEECCSCH-------HHHHHHHHHHHHTTCCCEEE
T ss_pred hhhcccCCcH-------HHHHHHHHHHHHcCCceEEE
Confidence 8888622111 11123344556688875553
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.012 Score=48.07 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+..+||+.|+ |.|..+..+++.. +.++.++.-+++-.+.++++ +... -+.....|..+.+.. .+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga~~---------vi~~~~~~~~~~i~~~t~~ 95 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN-GAHE---------VFNHREVNYIDKIKKYVGE 95 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCSE---------EEETTSTTHHHHHHHHHCT
T ss_pred CCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc-Cccc---------ccccccccHHHHhhhhhcc
Confidence 46678999996 4566777777765 57899999899988999874 3221 011111222222221 46
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+.-. ..+.++...+.|+|+|.++.
T Consensus 96 ~g~d~v~d~~-----------g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 96 KGIDIIIEML-----------ANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp TCEEEEEESC-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCceEEeecc-----------cHHHHHHHHhccCCCCEEEE
Confidence 7799988421 23568888899999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.53 E-value=0.051 Score=43.76 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=65.1
Q ss_pred cCCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc----ccccccc-
Q 038076 138 IVPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG----DVFSPSE- 211 (345)
Q Consensus 138 ~~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g----Da~~~l~- 211 (345)
+.+..+||+.|+| .|.++.++.+.....+|.+++.+++-.+.++++ +... .+... +....++
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l-Ga~~-----------~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GATE-----------CINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCSE-----------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh-CCcE-----------EEeCCchhhHHHHHHHH
Confidence 3566789999976 455666677766668999999999999999985 3221 11111 1112221
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..+..+|+|+--.- ....++.+...+++||.+++-...
T Consensus 94 ~~~~g~D~vid~~G----------~~~~~~~~~~~~~~g~~~~~v~~~ 131 (176)
T d2fzwa2 94 MTDGGVDYSFECIG----------NVKVMRAALEACHKGWGVSVVVGV 131 (176)
T ss_dssp HTTSCBSEEEECSC----------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HcCCCCcEeeecCC----------CHHHHHHHHHhhcCCceeEEEEee
Confidence 14567999985321 235778888999998877654443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.49 E-value=0.0043 Score=50.13 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+.|+| .|..+..+++. .+.+|.+++.+++=.+.++++ +.... +.....|...-+......+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~-Ga~~~---------~~~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKEL-GADLV---------VNPLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT-TCSEE---------ECTTTSCHHHHHHHHHSSE
T ss_pred CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhc-Cccee---------cccccchhhhhcccccCCC
Confidence 456789999987 45555566665 456899999999999999884 42210 0000012222222222344
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|.++.|... .+.++...+.|+|+|.+++
T Consensus 95 ~~~v~~~~~----------~~~~~~a~~~l~~~G~i~~ 122 (168)
T d1rjwa2 95 HAAVVTAVS----------KPAFQSAYNSIRRGGACVL 122 (168)
T ss_dssp EEEEESSCC----------HHHHHHHHHHEEEEEEEEE
T ss_pred ceEEeecCC----------HHHHHHHHHHhccCCceEe
Confidence 555555422 3568889999999999875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.22 E-value=0.086 Score=42.53 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=60.4
Q ss_pred CCCCCEEEEeeccc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-----c
Q 038076 139 VPNGPIAIYGLGGG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-----D 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-----~ 212 (345)
.+..+||++|+|++ ..+..+++.....+|.++|.+++-.+.++++.. . -.+...|..+.+. .
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga-~-----------~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-T-----------ECVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-S-----------EEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC-e-----------eEEecCCchhHHHHHHHHH
Confidence 45678999998644 455566666677899999999999999988753 1 1121122222221 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCc-EEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNG-RFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG-vlvv 255 (345)
.++.+|+||-..-. ...++.+...++.+| .+++
T Consensus 95 ~~~G~D~vid~~G~----------~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 95 SNGGVDFSFEVIGR----------LDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp TTSCBSEEEECSCC----------HHHHHHHHHHBCTTTCEEEE
T ss_pred hcCCCCEEEecCCc----------hhHHHHHHHHHhcCCcceEE
Confidence 45689988853211 345777777888864 5443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.015 Score=47.31 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=62.0
Q ss_pred cCCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc
Q 038076 138 IVPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~ 212 (345)
+.+.++||+.|+| .|..+.++++.. +.+|.+++.+++-.+.+++. +.. +++. .|..+.+.+
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l-Ga~------------~vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GAW------------QVINYREEDLVERLKE 91 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS------------EEEETTTSCHHHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc-CCe------------EEEECCCCCHHHHHHH
Confidence 3466789999766 456777777764 58999999999999999885 322 2232 222222222
Q ss_pred --CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 --ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 --~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.++.+|+|+ |.-.+ +.+....+.|+++|.+++
T Consensus 92 ~t~g~g~d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 92 ITGGKKVRVVY-DSVGR----------DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HTTTCCEEEEE-ECSCG----------GGHHHHHHTEEEEEEEEE
T ss_pred HhCCCCeEEEE-eCccH----------HHHHHHHHHHhcCCeeee
Confidence 357789766 33221 346778889999998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.79 E-value=0.044 Score=42.23 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
++++++|+| |-.+++.|.+ -+.+|+++|.||+.++.+++.. ..++.+|+.+. +.. .-++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~~~~~~~~~~~--------------~~~~~gd~~~~~~l~~a~i~~ 64 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYASYA--------------THAVIANATEENELLSLGIRN 64 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHHTTTTC--------------SEEEECCTTCTTHHHHHTGGG
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcHHHHHHHHHhC--------------CcceeeecccchhhhccCCcc
Confidence 578899887 3345555554 3678999999999999865432 35778898763 211 2356
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|.+++-..+. .....+-...+.+.+...+++
T Consensus 65 a~~vi~~~~~~-------~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 65 FEYVIVAIGAN-------IQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp CSEEEECCCSC-------HHHHHHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCch-------HHhHHHHHHHHHHcCCCcEEe
Confidence 88888754332 122333344445566666543
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=94.53 E-value=0.09 Score=46.24 Aligned_cols=116 Identities=15% Similarity=0.018 Sum_probs=80.8
Q ss_pred EeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCcccEEEEc
Q 038076 147 YGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIVVD 223 (345)
Q Consensus 147 IG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii~D 223 (345)
.=.|+-.++..+++ ++-++..+|+.|+-.+.-+++|. .++|++++..|+.+.+.. +.++=-+|++|
T Consensus 89 ~YPGSP~ia~~llR--~~Drl~l~ELHp~e~~~L~~~~~---------~~~~~~v~~~DG~~~l~allPP~~rRgLVLID 157 (271)
T d2oo3a1 89 YYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPH---------FNKKVYVNHTDGVSKLNALLPPPEKRGLIFID 157 (271)
T ss_dssp EEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCC---------TTSCEEEECSCHHHHHHHHCSCTTSCEEEEEC
T ss_pred cCCCCHHHHHHhCC--CCCceEEeecCHHHHHHHHHHhc---------cCCCceEEcCchHHHHHhhCCCCCCceEEEec
Confidence 34466666666554 68899999999999999998875 268999999999998765 45667799998
Q ss_pred CCCCCCCCCCcchHHHHHHHHhccC--CCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRLM--PNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L~--pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
..-. ...+. ....+.+.+.++ |+|+++++....+. .....+.+.|++.=+
T Consensus 158 PpYE--~k~ey--~~v~~~l~~a~kr~~~g~~~iWYPi~~~-----------------~~~~~~~~~l~~~~~ 209 (271)
T d2oo3a1 158 PSYE--RKEEY--KEIPYAIKNAYSKFSTGLYCVWYPVVNK-----------------AWTEQFLRKMREISS 209 (271)
T ss_dssp CCCC--STTHH--HHHHHHHHHHHHHCTTSEEEEEEEESSH-----------------HHHHHHHHHHHHHCS
T ss_pred CCcC--CHHHH--HHHHHHHHHHHHhCCCceEEEEeeccCc-----------------HHHHHHHHHHHhcCc
Confidence 5322 11111 112333333333 79999999886664 457778888887755
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.29 E-value=0.029 Score=45.60 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---cccccccc-
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~~- 212 (345)
.+..+||+.|+ |.|..+.++++.. +.++.++.-+++-.+.++++ +.. +++.. |..+.+.+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~-Ga~------------~vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL-GVE------------YVGDSRSVDFADEILEL 89 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT-CCS------------EEEETTCSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc-ccc------------ccccCCccCHHHHHHHH
Confidence 45578999884 4567777777764 57888887888888988874 321 12222 22222222
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.++.+|+|+.-.. .+.++.+.+.|+++|.++.
T Consensus 90 t~~~g~d~v~d~~g-----------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLA-----------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp TTTCCEEEEEECCC-----------THHHHHHHHTEEEEEEEEE
T ss_pred hCCCCEEEEEeccc-----------chHHHHHHHHhcCCCEEEE
Confidence 3578999995221 2467788899999999875
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.75 E-value=0.32 Score=38.74 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCCCCEEEEeeccc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc----cc-ccccc-
Q 038076 139 VPNGPIAIYGLGGG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG----DV-FSPSE- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g----Da-~~~l~- 211 (345)
.+..+|+++|+|++ ..+..+.+.....+|.++|.+++-.+.|+++ +... ++.- |. .....
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~-GAd~------------~in~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GATD------------FVNPNDHSEPISQVLSK 93 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCCE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc-CCcE------------EEcCCCcchhHHHHHHh
Confidence 45678999998864 4444555666778999999999999999885 4221 2211 11 11111
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..+..+|+|+-..- ..+.+..+...++++|..++-.
T Consensus 94 ~~~~G~d~vid~~G----------~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 94 MTNGGVDFSLECVG----------NVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp HHTSCBSEEEECSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hccCCcceeeeecC----------CHHHHHHHHHHhhCCCcceeEE
Confidence 13567999985321 1345667667766665444333
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.58 E-value=0.16 Score=38.89 Aligned_cols=97 Identities=15% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCccc
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~yD 218 (345)
++++++|+ |..+..+.+...+..|.+||.||+..+..++. .+.++.||+.+- |+. .-++.+
T Consensus 1 kHivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------------~~~~i~Gd~~~~~~L~~a~i~~A~ 64 (129)
T d2fy8a1 1 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLRS--------------GANFVHGDPTRVSDLEKANVRGAR 64 (129)
T ss_dssp CCEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------------TCEEEESCTTSHHHHHHTTCTTCS
T ss_pred CEEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------------CccccccccCCHHHHHHhhhhcCc
Confidence 46778765 56677777766677899999999998876542 367899998762 322 346788
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.+++...+. ....+.....+.++|+..+++.+....
T Consensus 65 ~vi~~~~~d-------~~n~~~~~~~r~~~~~~~iia~~~~~~ 100 (129)
T d2fy8a1 65 AVIVNLESD-------SETIHCILGIRKIDESVRIIAEAERYE 100 (129)
T ss_dssp EEEECCSSH-------HHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred EEEEeccch-------hhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence 888743221 122334455667899988877766444
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.52 E-value=0.057 Score=44.40 Aligned_cols=94 Identities=22% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCc
Q 038076 140 PNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~ 216 (345)
+..+||+-|+ |.|+.+.++.+.. +.+|+++--+++-.+.+++. +... -+. +..+-.+.. ...++.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~l-Ga~~---------vi~-~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL-GAKE---------VLA-REDVMAERIRPLDKQR 98 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT-TCSE---------EEE-CC---------CCSCC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhc-ccce---------eee-cchhHHHHHHHhhccC
Confidence 4578999985 4567888888764 68889999988989999885 3221 011 111111111 124678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
||+|+- .-.+ +.+....+.|+|+|.++.-
T Consensus 99 vD~vid-~vgg----------~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 99 WAAAVD-PVGG----------RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp EEEEEE-CSTT----------TTHHHHHHTEEEEEEEEEC
T ss_pred cCEEEE-cCCc----------hhHHHHHHHhCCCceEEEe
Confidence 998774 3221 2478888999999998753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.16 E-value=0.06 Score=44.26 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=59.6
Q ss_pred CCEEEEe--ecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 142 GPIAIYG--LGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 142 ~~VLiIG--~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
+.||+.| +|.|..+.++.+......|.++.-.++-.....+.++... -+..-..|..+.++. .++.+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~---------vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA---------AVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE---------EEETTSSCHHHHHHHHCTTCEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE---------EeeccchhHHHHHHHHhccCce
Confidence 5699988 4678899999988766677776666655554444444321 111111233333332 467799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+ |... .+.++...+.|+++|.++.
T Consensus 103 vv~-D~vG----------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 103 VYF-DNVG----------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp EEE-ESSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred EEE-ecCC----------chhHHHHhhhccccccEEE
Confidence 998 3221 3568889999999999864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.03 E-value=0.29 Score=39.48 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=63.5
Q ss_pred CCCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-----
Q 038076 139 VPNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE----- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~----- 211 (345)
.+..+||+.|++ .|..+.++.+.. +.+|.++.-+++-.+.+++.-. . +++..+-.++.+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga-~------------~vi~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGF-D------------AAFNYKTVNSLEEALKK 93 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S------------EEEETTSCSCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhh-h------------hhcccccccHHHHHHHH
Confidence 456789998875 456777777765 5899999999999998888532 1 122222222211
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..++.+|+|+--+ ..+.++.+.+.|+++|.+++
T Consensus 94 ~~~~Gvd~v~D~v-----------G~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 94 ASPDGYDCYFDNV-----------GGEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HCTTCEEEEEESS-----------CHHHHHHHGGGEEEEEEEEE
T ss_pred hhcCCCceeEEec-----------CchhhhhhhhhccCCCeEEe
Confidence 1567799988421 13678999999999999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.49 E-value=0.12 Score=38.77 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=55.3
Q ss_pred hcccc--CCCCCEEEEeecccH--HHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 134 SLPAI--VPNGPIAIYGLGGGT--AAHLMLDLWPSLKLEGWE--IDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G~--~~~~l~~~~p~~~v~~VE--idp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+|.+ ...++||++|+|.=. -++.+++ -+.+|++++ .+++..+.++ ..+++++..+..
T Consensus 3 ~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~--------------~~~i~~~~~~~~ 66 (113)
T d1pjqa1 3 HLPIFCQLRDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWAN--------------EGMLTLVEGPFD 66 (113)
T ss_dssp CEEEEECCBTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHT--------------TTSCEEEESSCC
T ss_pred ccceEEEeCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHh--------------cCCceeeccCCC
Confidence 34533 467899999988433 3334444 256777765 4455554432 235666654432
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
. ..-..+|+|+....+ .+.=+.+.+..++.|++ +|+...+.
T Consensus 67 ~---~dl~~~~lv~~at~d----------~~~n~~i~~~a~~~~il-VNv~D~p~ 107 (113)
T d1pjqa1 67 E---TLLDSCWLAIAATDD----------DTVNQRVSDAAESRRIF-CNVVDAPK 107 (113)
T ss_dssp G---GGGTTCSEEEECCSC----------HHHHHHHHHHHHHTTCE-EEETTCTT
T ss_pred H---HHhCCCcEEeecCCC----------HHHHHHHHHHHHHcCCE-EEeCCChh
Confidence 2 233568888874322 22333445555566888 47765543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.94 E-value=0.12 Score=44.96 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=47.6
Q ss_pred CCcEEEEEccccccccc-CCCcccEEEEcCCCCCC--C-CCCcc-------hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 196 GGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGK--V-LPQLE-------EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~--~-p~~l~-------t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
...-++++||.++.|+. .+++.|+|+.|.+-... . ..... -.+.+..+++.|+|+|.+.+++....
T Consensus 10 ~~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~ 86 (320)
T d1booa_ 10 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 86 (320)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred CCCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence 34569999999999887 56789999999743211 0 01111 24568899999999999999987543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.52 Score=36.72 Aligned_cols=100 Identities=8% Similarity=-0.033 Sum_probs=61.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CC
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-AS 214 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~ 214 (345)
..+++++|+| |-.++..|.+. +.++++||.||+... ...+.. ...+.++.||+.+. ++. .-
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~-----------~~~~~vi~Gd~~d~~~L~~a~i 69 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL-----------GDNADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH-----------CTTCEEEESCTTSHHHHHHHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhh-----------cCCcEEEEccCcchHHHHHhcc
Confidence 3579999987 33444555443 578999999997543 333433 23588999998874 222 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
++.|.|++-..+. .+--......+.+.|+-.+++-+...
T Consensus 70 ~~a~~vi~~~~~d-------~~n~~~~~~~r~~~~~~~iia~~~~~ 108 (153)
T d1id1a_ 70 DRCRAILALSDND-------ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp TTCSEEEECSSCH-------HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred ccCCEEEEccccH-------HHHHHHHHHHHHhCCCCceEEEEcCH
Confidence 6789998743221 11223334455678887776655443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.044 Score=43.42 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.||++||+| |+.++..|.+ .+.+|+.++.++.-.+.. +..+.. .......+..+..+ ..+.+|+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~----~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQPYCSV-NLVETD-------GSIFNESLTANDPD----FLATSDL 66 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCSEEEE-EEECTT-------SCEEEEEEEESCHH----HHHTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHHHhhhh-ccccCC-------ccccccccccchhh----hhcccce
Confidence 379999998 4455556655 357899999877522211 001100 01111112222211 2357999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|++-+- ...+.+.++.++.+++++..++.
T Consensus 67 iii~vk-------a~~~~~~~~~l~~~~~~~~~Iv~ 95 (167)
T d1ks9a2 67 LLVTLK-------AWQVSDAVKSLASTLPVTTPILL 95 (167)
T ss_dssp EEECSC-------GGGHHHHHHHHHTTSCTTSCEEE
T ss_pred EEEeec-------ccchHHHHHhhccccCcccEEee
Confidence 998432 23567889999999998887654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.52 E-value=3 Score=32.09 Aligned_cols=89 Identities=7% Similarity=0.032 Sum_probs=56.6
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|..||+| |..++..|++.. ..+|.+.|.+++..+...+.++. +.. .|... -.+.|+|
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~~~~-------------~~~-~~~~~-----v~~~Div 61 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKELGV-------------ETS-ATLPE-----LHSDDVL 61 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHHTCC-------------EEE-SSCCC-----CCTTSEE
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhhccc-------------ccc-ccccc-----ccccceE
Confidence 68899988 555666666653 37999999999988776665432 211 12111 2347999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+-+ + ...+..+.+-|++.+.+++.+...-.
T Consensus 62 ~lav------k-----P~~~~~v~~~l~~~~~~viS~~ag~~ 92 (152)
T d1yqga2 62 ILAV------K-----PQDMEAACKNIRTNGALVLSVAAGLS 92 (152)
T ss_dssp EECS------C-----HHHHHHHHTTCCCTTCEEEECCTTCC
T ss_pred EEec------C-----HHHHHHhHHHHhhcccEEeecccCCC
Confidence 9732 2 13455666667777788777765443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.42 E-value=0.11 Score=43.97 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred EEEEccccccccc-CCCcccEEEEcCCCCCCC--CCC--------cchHHHHHHHHhccCCCcEEEEEec
Q 038076 200 QVHIGDVFSPSED-ASGRYAGIVVDLFSEGKV--LPQ--------LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 200 ~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~--p~~--------l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++++||..+.|+. ++++.|+|+.|.+-...- -.. -...+.++++++.|+|+|.++++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence 4899999999877 467899999996432110 001 1134577899999999998876543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.06 E-value=2.6 Score=35.96 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=70.3
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+|+++=+|.|.+...+.+. .-..+-++|+|+...+.-+.+|+ -+++.+|..++-...-.+.|+|+.
T Consensus 2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~-------------~~~~~~Di~~~~~~~~~~~dll~~ 67 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS-------------AKLIKGDISKISSDEFPKCDGIIG 67 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCC-------------SEEEESCTTTSCGGGSCCCSEEEE
T ss_pred eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC-------------CCCccCChhhCCHhHcccccEEee
Confidence 6899989988888777654 23456699999999999888874 146789988874444467899986
Q ss_pred cCCCCCC----CCCCcc-h-----HHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 223 DLFSEGK----VLPQLE-E-----VATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 223 D~f~~~~----~p~~l~-t-----~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..+..+. -..... . .+++ .+.+.++|.-+++=|+.+.-.
T Consensus 68 g~PCq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~~Pk~~~lENV~~~~~ 116 (324)
T d1dcta_ 68 GPPCQSWSEGGSLRGIDDPRGKLFYEYI-RILKQKKPIFFLAENVKGMMA 116 (324)
T ss_dssp CCCCTTTSSSSCCCCSSSHHHHHHHHHH-HHHHHHCCSEEEEEEEGGGGS
T ss_pred cccccccccccccccccccccchHHHHH-HHHHhhCCceeeccccccccc
Confidence 5433321 111011 1 1222 355678999999989976554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=88.47 E-value=0.42 Score=37.78 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=58.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|-+||+| |..+++.|++. +.+|.+.|.++.-.+..++.... ...+..+. -+..|+|
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~~~---------------~~~~~~e~----~~~~d~i 60 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAAGAE---------------TASTAKAI----AEQCDVI 60 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCE---------------ECSSHHHH----HHHCSEE
T ss_pred EEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHhhhh---------------hcccHHHH----HhCCCeE
Confidence 58899999 66777777763 67899999999998887764321 12233333 3568999
Q ss_pred EEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+.++. ...+.+ ..+...+++| .+++++.+..+
T Consensus 61 i~~v~~~~------~v~~v~~~~~~~~~~~~~g-~iiid~sT~~p 98 (161)
T d1vpda2 61 ITMLPNSP------HVKEVALGENGIIEGAKPG-TVLIDMSSIAP 98 (161)
T ss_dssp EECCSSHH------HHHHHHHSTTCHHHHCCTT-CEEEECSCCCH
T ss_pred EEEcCCHH------HHHHHHhCCcchhhccCCC-CEEEECCCCCH
Confidence 98654421 122333 2355667765 55667776654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.46 E-value=0.37 Score=38.58 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=58.6
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+.|+ |.|..+.++++.. +.+|.+++-+++-.+.+++. +.. .-+-..|....+. ..+.
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l-Ga~-----------~~i~~~~~~~~~~-~~~g 91 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-GAE-----------EAATYAEVPERAK-AWGG 91 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-TCS-----------EEEEGGGHHHHHH-HTTS
T ss_pred CCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc-ccc-----------eeeehhhhhhhhh-cccc
Confidence 46678999885 3456777777765 57999999999988888874 321 1111122222221 3567
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+ |.. + . .+..+.+.|+|+|.++.
T Consensus 92 ~D~v~-d~~-G-~---------~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 92 LDLVL-EVR-G-K---------EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp EEEEE-ECS-C-T---------THHHHHTTEEEEEEEEE
T ss_pred ccccc-ccc-c-h---------hHHHHHHHHhcCCcEEE
Confidence 99886 432 1 1 24667789999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=88.18 E-value=1.3 Score=35.25 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=63.2
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|-+||+| |..+++.|++. +.+|.+.|.+++-++...+...... .. .-.....+ +...-...|.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~---------~~-~~a~~~~~-~~~~~~~~~~ 69 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKGT---------KV-LGAHSLEE-MVSKLKKPRR 69 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTTS---------SC-EECSSHHH-HHHHBCSSCE
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhccccc---------cc-cchhhhhh-hhhhhcccce
Confidence 579999999 67788888774 5789999999998887665432110 00 01111111 1123456788
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++.+.+. -...+.++.+...+++|-+ ++++.+...
T Consensus 70 ii~~~~~~------~~v~~v~~~l~~~~~~g~i-iid~sT~~~ 105 (176)
T d2pgda2 70 IILLVKAG------QAVDNFIEKLVPLLDIGDI-IIDGGNSEY 105 (176)
T ss_dssp EEECSCTT------HHHHHHHHHHHHHCCTTCE-EEECSCCCH
T ss_pred EEEecCch------HHHHHHHHHHHhccccCcE-EEecCcchh
Confidence 88765443 2345667888888887654 557766554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.08 E-value=0.15 Score=43.65 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=46.2
Q ss_pred cEEEEEccccccccc-CCCcccEEEEcCCCCCCC-----CCC--cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 198 VLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKV-----LPQ--LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 198 rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~-----p~~--l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+-.++.+|..+.|+. ++++.|+|+.|.+-.... ... -...+.+.++.+.|+|+|.+++|+....
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~ 75 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY 75 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccc
Confidence 346788999999877 468899999997432110 011 1235678899999999999999987544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.29 E-value=0.35 Score=38.96 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc-ccc-ccCCC
Q 038076 140 PNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF-SPS-EDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~-~~l-~~~~~ 215 (345)
+..+||+-|+ |-|..+.++.+.. +.+|+++--+++=.+.+++.-. . .+ +...|.. +-+ ...++
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGa-d----------~v-i~~~~~~~~~~~~~~~~ 89 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGA-S----------EV-ISREDVYDGTLKALSKQ 89 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTC-S----------EE-EEHHHHCSSCCCSSCCC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcc-c----------ce-EeccchhchhhhcccCC
Confidence 3457999885 4567888888775 5789999888888888877532 1 11 2112211 111 12457
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.+|+|+-.+ . -+.+....+.|+|+|.+++-
T Consensus 90 gvd~vid~v-g----------g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 90 QWQGAVDPV-G----------GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CEEEEEESC-C----------THHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEecC-c----------HHHHHHHHHHhccCceEEEe
Confidence 899987432 2 14688899999999998753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=86.99 E-value=2.4 Score=32.95 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCCCEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..++|.+||+|. | +++..+....-..++..+|++++..+- +.+..... .......+..+|-.+ -+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~------~~~~~~~~~~~d~~~-----~~~ 72 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ------AFTAPKKIYSGEYSD-----CKD 72 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG------GGSCCCEEEECCGGG-----GTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccc------cccCCceEeeccHHH-----hcc
Confidence 456899999872 4 444444444224689999999976542 22211100 012334566666432 256
Q ss_pred ccEEEEcCCCCCCC-C--CCcc--hHHHHHHHHhc---cCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKV-L--PQLE--EVATWLKLKDR---LMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~-p--~~l~--t~ef~~~~~~~---L~pgGvlvv 255 (345)
-|+|++-+..+... . ..+. +...++++.+. -.|+|++++
T Consensus 73 adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aiviv 119 (146)
T d1ez4a1 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119 (146)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 79999855332211 1 1121 23334443333 478887653
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=86.84 E-value=3.1 Score=35.80 Aligned_cols=123 Identities=11% Similarity=-0.027 Sum_probs=81.1
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+-+|++|=+|.|.+...+.+. +-..+-++|+|+..++.-+.+|+.. .++|..+.-...-...|+|
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~--------------~~~Di~~~~~~~~~~~Dll 75 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK--------------PEGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC--------------CBSCGGGSCGGGSCCCSEE
T ss_pred CCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC--------------CcCchhcCchhhcceeeee
Confidence 468999999999988887653 3345677999999999999988521 2478877654445679999
Q ss_pred EEcCCCCC----C----C--CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHH
Q 038076 221 VVDLFSEG----K----V--LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALS 290 (345)
Q Consensus 221 i~D~f~~~----~----~--p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~ 290 (345)
+...+..+ + . +..-.-.+++ .+.+.++|.=+++=|+.+.... +....++.+.+.|.
T Consensus 76 ~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~kP~~~~lENV~~~~~~-------------~~~~~~~~i~~~l~ 141 (327)
T d2c7pa1 76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPKVVFMENVKNFASH-------------DNGNTLEVVKNTMN 141 (327)
T ss_dssp EEECCCTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCSEEEEEEEGGGGTG-------------GGGHHHHHHHHHHH
T ss_pred ecccccchhhhhhhhcCCcccchhHHHHHH-HHHhccCCcEEecccchhhhhh-------------ccchhhHHhhhHHH
Confidence 87543322 1 1 1111123344 4456789998888899875531 11245677777777
Q ss_pred HH
Q 038076 291 EA 292 (345)
Q Consensus 291 ~~ 292 (345)
+.
T Consensus 142 ~l 143 (327)
T d2c7pa1 142 EL 143 (327)
T ss_dssp HT
T ss_pred hc
Confidence 65
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.36 Score=39.69 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC--CCC-CCCCCC------------CcEEEEEc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS--DLE-KPTATG------------GVLQVHIG 204 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~-~~~~~~------------~rv~v~~g 204 (345)
++|.+||+| |..++..++. .+.+|+.+|+|++.++.+++...-. ... +..... .+++.. .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 689999998 4444444443 4789999999999998776643200 000 000000 122222 1
Q ss_pred ccccccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 205 DVFSPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 205 Da~~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|..+ .-+.-|+|+= .+++.+ ...+.|+++.+.++++-+++.|..+...
T Consensus 82 d~~~----a~~~ad~ViE------av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i 130 (192)
T d1f0ya2 82 DAAS----VVHSTDLVVE------AIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI 130 (192)
T ss_dssp CHHH----HTTSCSEEEE------CCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH
T ss_pred hhHh----hhcccceehh------hcccchhHHHHHHHHHhhhcccCceeeccCccccc
Confidence 1111 1245678774 234433 4678999999999999999988876553
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.38 E-value=3.9 Score=31.63 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=56.1
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+++|.+||+| |.+++..+....-..++..+|++++..+- +.+...... .....+++..+|-.+ -+.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~-----~~~~~~~~~~~d~~~-----l~d 74 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV-----FAPKPVDIWHGDYDD-----CRD 74 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT-----SSSSCCEEEECCGGG-----TTT
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc-----ccCCCeEEEECCHHH-----hcc
Confidence 45689999987 33455555543223689999999987442 111110000 112345666666433 244
Q ss_pred ccEEEEcCCCCCCCC-C--Cc--chHHHHHHHHhc---cCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVL-P--QL--EEVATWLKLKDR---LMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p-~--~l--~t~ef~~~~~~~---L~pgGvlvvn~~~ 259 (345)
-|+|++-+-.+.... . .+ .+.+.++.+.+. -.|+|+++ ++.+
T Consensus 75 aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~i-vvtN 124 (148)
T d1ldna1 75 ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL-VATN 124 (148)
T ss_dssp CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEE-ECSS
T ss_pred ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEE-EecC
Confidence 799998543332211 1 12 123333333333 36899765 4443
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=86.37 E-value=1.8 Score=32.25 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=51.5
Q ss_pred EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 166 KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 166 ~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
+|.+||=|+.+.+..++.+.-. ..+ ....++.+.+. ..++||+|++|..-+ ...-.++++.+++
T Consensus 4 kILiVDDd~~~~~~l~~~L~~~---------g~v-~~~~~~~~al~-~~~~~dlillD~~mP-----~~~G~~~~~~lr~ 67 (120)
T d1p2fa2 4 KIAVVDDDKNILKKVSEKLQQL---------GRV-KTFLTGEDFLN-DEEAFHVVVLDVMLP-----DYSGYEICRMIKE 67 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT---------EEE-EEESSHHHHHH-CCSCCSEEEEESBCS-----SSBHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhC---------CEE-EEECCHHHHHh-cCCCCCEEEEeCccc-----ccchhHHHHHHhh
Confidence 7899999999999999988521 233 35668888876 356899999997543 2345678888876
Q ss_pred ccCCCcEEEE
Q 038076 246 RLMPNGRFMV 255 (345)
Q Consensus 246 ~L~pgGvlvv 255 (345)
.=..--++++
T Consensus 68 ~~~~~~ii~i 77 (120)
T d1p2fa2 68 TRPETWVILL 77 (120)
T ss_dssp HCTTSEEEEE
T ss_pred cCCCCcEEEE
Confidence 5333334443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.10 E-value=0.19 Score=39.53 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=33.8
Q ss_pred hcccc--CCCCCEEEEeecccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhc
Q 038076 134 SLPAI--VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGW--EIDEILIDKVRDYF 184 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~V--Eidp~vi~~A~~~f 184 (345)
.+|.. .+.++||+||+|.-...+.-.=..-+.+|++| |++|++.+.+.+..
T Consensus 4 ~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~~~~~~~ 58 (150)
T d1kyqa1 4 SLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFI 58 (150)
T ss_dssp CEEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGG
T ss_pred cchhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHhcc
Confidence 45543 46899999999854433322111236788888 88899999887654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.33 E-value=0.67 Score=37.18 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=44.2
Q ss_pred CEEEEeecc-cH-HHHHHHHhCCCCEEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGG-GT-AAHLMLDLWPSLKLEG-WEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~-G~-~~~~l~~~~p~~~v~~-VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
||.+||||. |. ....+ +..++.++++ +|.|++-.+...+.++.+. ..+ +..|..+.++ ....|+
T Consensus 3 ki~iIG~G~~g~~~~~~l-~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~ll~--~~~iD~ 69 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAI-HLAPNATISGVASRSLEKAKAFATANNYPE---------STK-IHGSYESLLE--DPEIDA 69 (184)
T ss_dssp EEEEESCCTTHHHHHHHH-HHCTTEEEEEEECSSHHHHHHHHHHTTCCT---------TCE-EESSHHHHHH--CTTCCE
T ss_pred EEEEEcCCHHHHHHHHHH-HhCCCCEEEEEEeCCccccccchhcccccc---------cee-ecCcHHHhhh--ccccce
Confidence 689999984 32 23333 3457788885 4999988776666665442 122 3567666664 356899
Q ss_pred EEEcC
Q 038076 220 IVVDL 224 (345)
Q Consensus 220 Ii~D~ 224 (345)
|++-.
T Consensus 70 v~I~t 74 (184)
T d1ydwa1 70 LYVPL 74 (184)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98743
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=84.44 E-value=0.74 Score=36.35 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=43.8
Q ss_pred CEEEEeecccH-H-HHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLGGGT-A-AHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~-~-~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
||.+||+|.-. - -...++..++.++.++|.+++-.+...+.++.+. +..|..+.++ ...|+|
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~ll~---~~iD~V 66 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSA-------------TCTDYRDVLQ---YGVDAV 66 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCC-------------CCSSTTGGGG---GCCSEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccc-------------ccccHHHhcc---ccccee
Confidence 68999998432 1 2233445678888999999999888877776432 1245556553 358999
Q ss_pred EEc
Q 038076 221 VVD 223 (345)
Q Consensus 221 i~D 223 (345)
++-
T Consensus 67 ~I~ 69 (167)
T d1xeaa1 67 MIH 69 (167)
T ss_dssp EEC
T ss_pred ccc
Confidence 874
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.18 E-value=0.69 Score=36.08 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=31.1
Q ss_pred CCCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 141 NGPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 141 p~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.++||+||+| .| .++..|.+. +.+|+++|.+++-.+...+.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~~ 46 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQ 46 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhccc
Confidence 4789999987 33 344455442 5699999999998887666553
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.08 E-value=2.3 Score=36.74 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=78.6
Q ss_pred CCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+|-+|+++-+|.|.+...+... +...-+-++|+|+..++..+.+|+- ..++.+|..+.... ....
T Consensus 1 ~p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~------------~~~~~~di~~~~~~~~~~~~ 68 (343)
T d1g55a_ 1 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------------TQLLAKTIEGITLEEFDRLS 68 (343)
T ss_dssp CCEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------------SCEECSCGGGCCHHHHHHHC
T ss_pred CCCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC------------CCcccCchhhCCHhHcCCCC
Confidence 3678999999999888777654 1113467899999999998888741 34566787765322 1236
Q ss_pred ccEEEEcCCCCCC--------C--CCCcchHHHHHHHHhcc--CCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHH
Q 038076 217 YAGIVVDLFSEGK--------V--LPQLEEVATWLKLKDRL--MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNS 284 (345)
Q Consensus 217 yD~Ii~D~f~~~~--------~--p~~l~t~ef~~~~~~~L--~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~ 284 (345)
.|+|+...+..+. . +..-...++++.++. + +|.=+++=|+.+-... ...+.
T Consensus 69 ~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~-~~~kPk~~i~ENV~~l~~~----------------~~~~~ 131 (343)
T d1g55a_ 69 FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPR-LQKLPKYILLENVKGFEVS----------------STRDL 131 (343)
T ss_dssp CSEEEECCC------------------CHHHHHHHHGGG-CSSCCSEEEEEEETTGGGS----------------HHHHH
T ss_pred ccEEEeecccccccccccccccccccccccchhhhhHhh-hcCCCceeeeeccCCcccc----------------hhhHH
Confidence 8999865433211 0 000112334444433 4 6988777798865431 23556
Q ss_pred HHHHHHHHCCCCEEEEEe
Q 038076 285 AIRALSEAFPGKVSWKRM 302 (345)
Q Consensus 285 ~~~~l~~~F~~~v~~~~~ 302 (345)
+++.|++. .-.+.+..+
T Consensus 132 i~~~l~~~-GY~v~~~vl 148 (343)
T d1g55a_ 132 LIQTIENC-GFQYQEFLL 148 (343)
T ss_dssp HHHHHHHT-TEEEEEEEE
T ss_pred HHhhhhcc-ccccceeee
Confidence 66677665 223444443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.98 E-value=0.54 Score=38.00 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=53.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCcc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGW--EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGRY 217 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~y 217 (345)
+|.+||+| |-+++..+.+. +-+|+.+ +.|++.++.-.+....+... ..-....+.. .|..+ .-+..
T Consensus 2 kI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~---~~~~~~~i~~~~~~~~----~~~~a 72 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLG---VKLNGVEIFWPEQLEK----CLENA 72 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTT---BCCCSEEEECGGGHHH----HHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhc---chhccccccccccHHH----HHhcc
Confidence 68899999 33556566654 3466666 56888777654432211110 0011222221 22211 23568
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|++-+ |. -..++.++++...|+++-+++
T Consensus 73 d~Ii~av------ps-~~~~~~~~~l~~~l~~~~ii~ 102 (180)
T d1txga2 73 EVVLLGV------ST-DGVLPVMSRILPYLKDQYIVL 102 (180)
T ss_dssp SEEEECS------CG-GGHHHHHHHHTTTCCSCEEEE
T ss_pred chhhccc------ch-hhhHHHHHhhccccccceecc
Confidence 9999843 22 245788999999998764443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=82.85 E-value=5.4 Score=30.69 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHH
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILID 178 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~ 178 (345)
|.+|.+||+| |.+++..+....-..++..+|++++..+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~ 40 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 40 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence 5689999987 3344444443322368999999998765
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.83 E-value=2.3 Score=33.27 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|-+||+| |..+++.|.+. +.+|.+.|.++.-.+........ ...+..+ .-...|+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~~~~~~~~~~~~---------------~~~~~~e----~~~~~di 60 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAAGAS---------------AARSARD----AVQGADV 60 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHTTCE---------------ECSSHHH----HHTSCSE
T ss_pred CEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchhhhhhhhhhhcc---------------ccchhhh----hccccCe
Confidence 468999999 66788888874 57899999999988876654321 1122222 2356799
Q ss_pred EEEcCCCCCCCCCCcchHHHHHH---HHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLK---LKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~---~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+.-+.+.. ...+.+.. +...|++|- +++++.+..+
T Consensus 61 ii~~v~~~~------~~~~v~~~~~~~~~~l~~g~-iiid~st~~p 99 (162)
T d3cuma2 61 VISMLPASQ------HVEGLYLDDDGLLAHIAPGT-LVLECSTIAP 99 (162)
T ss_dssp EEECCSCHH------HHHHHHHSTTCHHHHSCTTC-EEEECSCCCH
T ss_pred eeecccchh------hHHHHHhccccccccCCCCC-EEEECCCCCH
Confidence 988654431 22333332 455677764 5568877665
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=82.76 E-value=4.5 Score=31.67 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=60.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|-+||+| |..+++.|.+. +.+|.+.|.+++-.+...+....... .+.... ..+.-.+.. .-...+.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~------~~~~~~-~~~~~~~~~-~~~~~~~ 71 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPF------AGNLKA-FETMEAFAA-SLKKPRK 71 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTT------GGGEEE-CSCHHHHHH-HBCSSCE
T ss_pred CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCcccc------ccchhh-hhhhhHHHH-hcccceE
Confidence 468899999 56778887764 57899999999998877665542221 122222 112212221 1233344
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+.-+ ++.....+.+..+...++++.++ +++.....
T Consensus 72 ~~~~~------~~~~~~~~~~~~~~~~~~~~~ii-i~~st~~~ 107 (178)
T d1pgja2 72 ALILV------QAGAATDSTIEQLKKVFEKGDIL-VDTGNAHF 107 (178)
T ss_dssp EEECC------CCSHHHHHHHHHHHHHCCTTCEE-EECCCCCH
T ss_pred EEEee------cCcchhhhhhhhhhhhcccccee-cccCccch
Confidence 43322 22234456677888889888766 46555443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.28 E-value=0.71 Score=39.66 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.+..-||+-=+|+|+++.+..+. +-+..++|+||+.+++|++++.
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence 35678999999999999988875 6899999999999999999885
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=82.02 E-value=0.51 Score=36.60 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECCH
Q 038076 141 NGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 141 p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEidp 174 (345)
.+||++||+|.. .++..|.+..++.+|+.+|-+|
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 479999999933 4556777777889999999877
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.28 E-value=5 Score=30.67 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=54.3
Q ss_pred CEEEEeecc-cHH-HHHHHHhCCCCEEEEEECCHHHHHHHH-HhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGG-GTA-AHLMLDLWPSLKLEGWEIDEILIDKVR-DYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~-G~~-~~~l~~~~p~~~v~~VEidp~vi~~A~-~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+|. |.. +..+....-..++..+|++++..+.-. +...-.. ..++.++..+|-.+ + +.-|+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~------~~~~~~~~~~~~~~-~----~~adi 70 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRRANIYAGDYAD-L----KGSDV 70 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG------GSCCCEEEECCGGG-G----TTCSE
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc------ccccccccCCcHHH-h----cCCCE
Confidence 688999873 433 333333322368999999997766322 1111000 12355666666433 2 45799
Q ss_pred EEEcCCCCCCCCCC----c--chHHHHHHHHhc---cCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQ----L--EEVATWLKLKDR---LMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~----l--~t~ef~~~~~~~---L~pgGvlvvn~~~~ 260 (345)
|++-+-.+.. |.. + .+.+.++.+.+. ..|+++++ ++.++
T Consensus 71 vvitag~~~~-~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivi-vvtNP 118 (140)
T d1a5za1 71 VIVAAGVPQK-PGETRLQLLGRNARVMKEIARNVSKYAPDSIVI-VVTNP 118 (140)
T ss_dssp EEECCCCCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE-ECSSS
T ss_pred EEEecccccC-CCcchhhhhccccchHHHHHHHHHhcCCCcEEE-EeCCc
Confidence 9986533322 111 1 122334444333 57889765 45443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=80.76 E-value=9.9 Score=29.15 Aligned_cols=108 Identities=13% Similarity=0.018 Sum_probs=56.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVR-DYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~-~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++|.+||+| |.+++..+....-..++..+|++++..+--. +...... ..+...++..+|-.+ -+.-|
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~-----~~~~~~~~~~~d~~~-----l~~ad 71 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-----NLEAHGNIVINDWAA-----LADAD 71 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-----GSSSCCEEEESCGGG-----GTTCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc-----ccCCccceeccCHHH-----hcccc
Confidence 689999987 3455555554433468999999999754211 1110000 012345566666433 25689
Q ss_pred EEEEcCCCCC----CC-CCC--c--chHHHHHHHHhc---cCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEG----KV-LPQ--L--EEVATWLKLKDR---LMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~----~~-p~~--l--~t~ef~~~~~~~---L~pgGvlvvn~~~~ 260 (345)
+|++-+-... .. ... + .+...++++.+. -.|+++++ ++.++
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivi-vvtNP 124 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV-VISNP 124 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE-ECSSS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEE-EecCc
Confidence 9987543211 10 111 1 234455555444 47899854 55443
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=80.05 E-value=2.1 Score=31.75 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.6
Q ss_pred cCCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEEC--------CHHHHHHHHHhcC
Q 038076 138 IVPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEI--------DEILIDKVRDYFG 185 (345)
Q Consensus 138 ~~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEi--------dp~vi~~A~~~f~ 185 (345)
+..|++|++||+|- |.-....++. -+.+|+.+|. ||++.+..++.+.
T Consensus 19 l~~p~~v~IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 19 IKESKKIGIVGSGYIAVELINVIKR-LGIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp CCCCSEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCchHHHHHHHHHHh-ccccceeeehhccccccccHHHHHHHHHHHH
Confidence 34589999999883 4322233322 4789999996 7888888887764
|