Citrus Sinensis ID: 038079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MESNPLHQQIASMRQHLLDEEILDEQFVELEGlalasdedpnfVEVTINVYFEESNELLPMIEDllgknpiegsEMERILHRFKGscasvgankvKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA
Flexible Loop (DISEMBL)
MESNPLHQQIASMRQHLLDEEILDEQFVELEGLalasdedpnFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCasvgankvknEVNVVIACCRNGDIEGAKAAFEQVKteqgnlkakLDSYFELVKQAKA
Low Complexity Region (SEG)
MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA
Disordered region (IsUnstruct)
****************LLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVK*********LDSYF********
Disordered Region (DISOPRED)
********QIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQA**
Disordered Region (DISEMBL)
*********IASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA
Disordered Region (DISPRO)
*ESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9LU15	127	Histidine-containing phos	no	no	0.791	0.897	0.405	9e-19
Q9ZNV8	156	Histidine-containing phos	no	no	0.930	0.858	0.328	1e-11
Q9SAZ5	155	Histidine-containing phos	no	no	0.923	0.858	0.318	3e-10
Q8L9T7	157	Histidine-containing phos	no	no	0.930	0.853	0.306	2e-09
Q9ZNV9	154	Histidine-containing phos	no	no	0.743	0.694	0.280	3e-09
Q6VAK4	149	Histidine-containing phos	no	no	0.979	0.946	0.260	1e-08

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 22  ILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILH 81
            LDEQF+ELE   L  D +PNFVE    +YF++S  L+  I+  L +   + + ++  +H
Sbjct: 11  YLDEQFMELE--ELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68

Query: 82  RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFE 137
           +FKGS  S+GA+KVK E       CR G+ EG    F+Q+K E   L+ KL+ YF+
Sbjct: 69  QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQ 124

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 6   LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP-MIED 64
           L +Q       L  +  LD+QF EL+   L  D  P+FV   ++++FE+  +L+  M   
Sbjct: 8   LQRQFRDYTISLYQQGFLDDQFTELK--KLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query: 65  LLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
           L     ++ S++   +H+ KGS +SVGA +VK        CC   + EG     +QV  E
Sbjct: 66  LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIE 125

Query: 125 QGNLKAKLDSYFELVKQ 141
              LK KL   F L KQ
Sbjct: 126 YKALKTKLQDMFNLEKQ 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 6   LHQQIASMRQHLLDEEILDEQFVELEGLALASDE-DPNFVEVTINVYFEESNELLP-MIE 63
           L ++       L  +  LD+QF EL+ L    DE  P+FV   + ++FE+  +L+  M  
Sbjct: 8   LQRRFCDFTISLYHQGFLDDQFTELKKL---QDECSPDFVAEVVTLFFEDCEKLISNMAR 64

Query: 64  DLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
            L     ++   +   +H+ KGS +SVGA +VK     +  CC + + EG     +QV  
Sbjct: 65  ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124

Query: 124 EQGNLKAKLDSYFELVKQ 141
           E   LKAKL   F L +Q
Sbjct: 125 EYKTLKAKLQDLFNLEQQ 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 6   LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDL 65
           L +Q       L  +  LD QF EL    L  +  P+FV   ++++F++ ++L+  +   
Sbjct: 9   LQRQFQDYIVSLYQQGFLDNQFSELR--KLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66

Query: 66  LGK-NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
           L + + ++  +++  +H+ KGS +SVGA +VKN       CC   + EG     +QV  E
Sbjct: 67  LERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYE 126

Query: 125 QGNLKAKLDSYFELVKQ 141
              LK KL   F L KQ
Sbjct: 127 YKMLKTKLQDLFNLEKQ 143

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 62/107 (57%)

Query: 38  DEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN 97
           + +P+FV   + ++F++S+ +L  +   L +  ++  +++  +H+ KGS +S+GA +VKN
Sbjct: 36  ESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKN 95

Query: 98  EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
              V  + C   ++E      +QVK E   +K +L++ F+L +Q  A
Sbjct: 96  ACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVA 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 5/146 (3%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDE--DPNFVEVTINVYFEESNEL 58
           M +  L  Q+ ++   +  + ++DEQF +L+ L    DE   P FV   + ++ ++++ +
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVDEQFQQLQML---QDEGGTPGFVSEVVTLFCDDADRI 57

Query: 59  LPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF 118
           +  I  LL +  +   +++  +H+ KGS ASVGA KVK         C++   +G   A 
Sbjct: 58  INEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMAL 117

Query: 119 EQVKTEQGNLKAKLDSYFELVKQAKA 144
             V+ +  +L+ K  +  +L +Q +A
Sbjct: 118 AVVRNDFYDLRNKFQTMLQLEQQIQA 143

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
225445098	214	PREDICTED: histidine-containing phosphot	0.958	0.644	0.475	5e-28
357454793	150	Histidine phosphotransfer protein [Medic	0.972	0.933	0.401	1e-27
357454789	150	Histidine phosphotransfer protein [Medic	0.972	0.933	0.401	3e-27
388504598	150	unknown [Medicago truncatula]	0.972	0.933	0.401	3e-27
255549828	150	Histidine-containing phosphotransfer pro	0.965	0.926	0.439	3e-27
356526081	151	PREDICTED: histidine-containing phosphot	0.972	0.927	0.412	5e-27
224054404	224	histidine phosphotransfer protein [Popul	0.972	0.625	0.429	7e-27
391349165	150	histidine phosphotransfer protein [Popul	0.972	0.933	0.429	7e-27
351723223	151	uncharacterized protein LOC100526849 [Gl	0.972	0.927	0.412	7e-27
449447821	150	PREDICTED: histidine-containing phosphot	0.972	0.933	0.422	1e-26

>gi|225445098|ref|XP_002283696.1| PREDICTED: histidine-containing phosphotransfer protein 4 [Vitis vinifera] gi|297738760|emb|CBI28005.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 98/141 (69%), Gaps = 3/141 (2%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           MES  LHQQI++M+Q LLDE  +D  FVELE   L   ++ +F E  I ++F +S  L+ 
Sbjct: 1   MEST-LHQQISAMKQSLLDEGFVDGHFVELE--LLEDGDNLHFTEEIITLFFTDSARLIV 57

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            +E  L  +PI+ S++++ILH+FKGS +SVGAN+V+ +   +   C++GD+EG KAA +Q
Sbjct: 58  DVEKELNNDPIDYSKVDKILHQFKGSSSSVGANRVRLQGTKLRESCKDGDVEGWKAALKQ 117

Query: 121 VKTEQGNLKAKLDSYFELVKQ 141
           +K E   LK KLD+YF+LVKQ
Sbjct: 118 LKKEHATLKEKLDTYFQLVKQ 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454793|ref|XP_003597677.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486725|gb|AES67928.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           M+ N   +Q+A+M+Q L D+  LDEQF++LE   L  D +PNFVE  + +Y+ +S+ L+ 
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLE--ELQDDANPNFVEEIVTLYYRDSSRLIS 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            +E  L ++P++ ++++ I+H+FKGS +S+GA KVK E  ++   CR G+ EG + +F+Q
Sbjct: 59  SLEQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E   L+ +L++YF+L +QA
Sbjct: 119 MKREYAALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454789|ref|XP_003597675.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486723|gb|AES67926.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           M+ N   +Q+A+M+Q L D+  LDEQF++LE   L  D +PNFVE  + +Y+ +S+ L+ 
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLE--ELQDDANPNFVEEIVTLYYRDSSRLIS 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            +E  L ++P++ ++++ I+H+FKGS +S+GA KVK E  ++   CR G+ EG + +F+Q
Sbjct: 59  SLEQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E   L+ +L++YF+L +QA
Sbjct: 119 MKKEYVALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504598|gb|AFK40365.1| unknown [Medicago truncatula]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           M+ N   +Q+A+M+Q L D+  LDEQF++LE   L  D +PNFVE  + +Y+ +S+ L+ 
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLE--ELQDDANPNFVEELVTLYYRDSSRLIS 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            +E  L ++P++ ++++ I+H+FKGS +S+GA KVK E  ++   CR G+ EG + +F+Q
Sbjct: 59  SLEQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E   L+ +L++YF+L +QA
Sbjct: 119 MKKEYVALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549828|ref|XP_002515965.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223544870|gb|EEF46385.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 92/141 (65%), Gaps = 2/141 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           ME N LH+Q+A  RQ L D+  LDEQF++LE   L  D +PNFVE  + +Y+ +S  L+ 
Sbjct: 1   MERNKLHRQVALARQSLFDQGFLDEQFLQLE--ELQDDANPNFVEEVVTLYYRDSARLIL 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            IE  L ++P++ ++++  +H+FKGS +S+GA KVK E  +    CR G+ EG    F+Q
Sbjct: 59  SIEQGLERHPLDFNKLDSHMHQFKGSSSSIGAKKVKAECTLFREYCRAGNGEGCARTFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQ 141
           +K E   LK KL+SYF+L +Q
Sbjct: 119 LKKEYATLKKKLESYFQLARQ 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526081|ref|XP_003531648.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Glycine max]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           M+ N   +Q+A+M+Q L D+ +LDEQF++LE   L  D +PNFVE  + +++ +S+ L+ 
Sbjct: 1   MDRNQSRRQVAAMKQSLFDQGLLDEQFIQLE--ELQDDANPNFVEEIVTLHYRDSSRLIS 58

Query: 61  MIEDLLG-KNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFE 119
            IE  L  +NP++ ++++ ++H+FKGS +S+GA KVK E N+    CR G+ EG   +F+
Sbjct: 59  SIEQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKTECNLFREYCRAGNAEGCMRSFQ 118

Query: 120 QVKTEQGNLKAKLDSYFELVKQA 142
           Q+K E   L+ KL++YF+L +QA
Sbjct: 119 QLKREYAALRKKLEAYFQLARQA 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054404|ref|XP_002298243.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222845501|gb|EEE83048.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 93/142 (65%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           ME N L +Q+A  RQ L D+  LDEQF++LE   L  D +PNFVE  +++++ +S  L+ 
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLDEQFIQLE--ELQDDANPNFVEEVVSLHYRDSARLIS 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            IE  L KNP++ ++++  +H+FKGS +S+GA KVK E  +    C+ G+ EG    F+Q
Sbjct: 59  NIEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E   LK KL++YF+L +QA
Sbjct: 119 IKKEYATLKRKLETYFQLARQA 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391349165|emb|CCI55474.1| histidine phosphotransfer protein [Populus x canadensis]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 93/142 (65%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           ME N L +Q+A  RQ L D+  LDEQF++LE   L  D +PNFVE  +++++ +S  L+ 
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLDEQFIQLE--ELQDDANPNFVEEVVSLHYRDSARLIS 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            IE  L KNP++ ++++  +H+FKGS +S+GA KVK E  +    C+ G+ EG    F+Q
Sbjct: 59  NIEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E   LK KL++YF+L +QA
Sbjct: 119 IKKEYATLKRKLETYFQLARQA 140

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723223|ref|NP_001234968.1| uncharacterized protein LOC100526849 [Glycine max] gi|255630982|gb|ACU15855.1| unknown [Glycine max]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 97/143 (67%), Gaps = 3/143 (2%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           M+ N   +Q+A+M+Q L D+  LDEQF++LE   L  D +PNFVE  + +++ +S+ L+ 
Sbjct: 1   MDRNQSRRQVAAMKQSLFDQGFLDEQFIQLE--ELQDDANPNFVEEIVTLHYRDSSRLIS 58

Query: 61  MIEDLLG-KNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFE 119
            IE  L  +NP++ ++++ ++H+FKGS +S+GA KVK E N+    CR G+ EG   +F+
Sbjct: 59  SIEQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKAECNLFREYCRTGNAEGCMRSFQ 118

Query: 120 QVKTEQGNLKAKLDSYFELVKQA 142
           Q+K E   L+ KL++YF+L +QA
Sbjct: 119 QLKREYAALRKKLEAYFQLARQA 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447821|ref|XP_004141666.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus] gi|449480619|ref|XP_004155947.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 95/142 (66%), Gaps = 2/142 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           ME   L +Q+A++RQ L D+  LDEQFV+LE   L  D +PNFVE  + +Y+ +S+ L+ 
Sbjct: 1   MEKTQLRRQLANIRQSLFDQGFLDEQFVQLE--ELQDDANPNFVEEIVTLYYRDSSRLIL 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            IE  L K+P++ ++++ ++H+FKGS +S+GA KVK E   +   C+ G  EG    F+Q
Sbjct: 59  SIEQALQKSPLDFNKLDALMHQFKGSSSSIGAKKVKAECTQLREYCKAGSGEGCMRTFQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQA 142
           +K E  +L+ KL++YF+L +QA
Sbjct: 119 LKKEYTSLRKKLEAYFQLARQA 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.854	0.798	0.304	1.3e-13
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.930	0.858	0.328	5.6e-13
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.923	0.858	0.311	3.9e-12
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.923	0.847	0.318	1e-11
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.916	0.857	0.323	2e-10
TAIR|locus:2183184	114	AT5G19710 "AT5G19710" [Arabido	0.368	0.464	0.396	2.8e-09

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/125 (30%), Positives = 73/125 (58%)

Query:    20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79
             E ILD QF++L+   L  + +P+FV   + ++F++S+ +L  +   L +  ++  +++  
Sbjct:    20 EGILDSQFLQLQ--QLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPH 77

Query:    80 LHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELV 139
             +H+ KGS +S+GA +VKN   V  + C   ++E      +QVK E   +K +L++ F+L 
Sbjct:    78 VHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLE 137

Query:   140 KQAKA 144
             +Q  A
Sbjct:   138 QQIVA 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 45/137 (32%), Positives = 67/137 (48%)

Query:     6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP-MIED 64
             L +Q       L  +  LD+QF EL+   L  D  P+FV   ++++FE+  +L+  M   
Sbjct:     8 LQRQFRDYTISLYQQGFLDDQFTELK--KLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query:    65 LLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
             L     ++ S++   +H+ KGS +SVGA +VK        CC   + EG     +QV  E
Sbjct:    66 LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIE 125

Query:   125 QGNLKAKLDSYFELVKQ 141
                LK KL   F L KQ
Sbjct:   126 YKALKTKLQDMFNLEKQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/138 (31%), Positives = 69/138 (50%)

Query:     6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDE-DPNFVEVTINVYFEESNELLPMIED 64
             L ++       L  +  LD+QF EL+ L    DE  P+FV   + ++FE+  +L+  +  
Sbjct:     8 LQRRFCDFTISLYHQGFLDDQFTELKKL---QDECSPDFVAEVVTLFFEDCEKLISNMAR 64

Query:    65 LLGKNP-IEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
              L +   ++   +   +H+ KGS +SVGA +VK     +  CC + + EG     +QV  
Sbjct:    65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124

Query:   124 EQGNLKAKLDSYFELVKQ 141
             E   LKAKL   F L +Q
Sbjct:   125 EYKTLKAKLQDLFNLEQQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 44/138 (31%), Positives = 70/138 (50%)

Query:     6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDED-PNFVEVTINVYFEESNELLPMIED 64
             L +Q       L  +  LD QF EL  L    DE  P+FV   ++++F++ ++L+  +  
Sbjct:     9 LQRQFQDYIVSLYQQGFLDNQFSELRKL---QDEGTPDFVAEVVSLFFDDCSKLINTMSI 65

Query:    65 LLGK-NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
              L + + ++  +++  +H+ KGS +SVGA +VKN       CC   + EG     +QV  
Sbjct:    66 SLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDY 125

Query:   124 EQGNLKAKLDSYFELVKQ 141
             E   LK KL   F L KQ
Sbjct:   126 EYKMLKTKLQDLFNLEKQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 45/139 (32%), Positives = 70/139 (50%)

Query:     6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDL 65
             L   I  +   L  + +LDEQF++L+   L  +  PNFV   IN+YF+ES +LL  +  L
Sbjct:     9 LQADINRLLASLFHQGVLDEQFLQLQ--QLQDETSPNFVYDVINIYFDESEKLLRNLRLL 66

Query:    66 LGKNPIEGSEMERI-LH--RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVK 122
             L     E S+ ++I LH  +  GS +S+GA +V+N      +     +  G     E V+
Sbjct:    67 LMDR--EFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVE 124

Query:   123 TEQGNLKAKLDSYFELVKQ 141
              E   LK  +   F+L +Q
Sbjct:   125 HEYHYLKNMMHELFQLEQQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2183184 AT5G19710 "AT5G19710" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query:    90 VGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQA 142
             +GA KV  E+       + G+IEG K A   +K E   L+AK ++YF+L++QA
Sbjct:    52 IGAIKVVKELKKANTFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQLMRQA 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
pfam01627	87	pfam01627, Hpt, Hpt domain	4e-04
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	0.001

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 48 INVYFEESNELLPMIEDLLGKNPIE-GSEMERILHRFKGSCASVGANKVKN 97
          + ++ EE+ ELL  +E  L     E    + R  H  KGS  S+G   +  
Sbjct: 3  LELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAE 53

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 48 INVYFEESNELLPMIEDLLGKNPIEG--SEMERILHRFKGSCASVGANKVKN 97
          + ++ EE+ ELL  +E  L +       +E+ R  H  KGS AS+G  ++  
Sbjct: 5  LELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQ 56

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG4747	150	consensus Two-component phosphorelay intermediate	99.96
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.67
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.65
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.52
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.41
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.37
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.12
PRK10618	894	phosphotransfer intermediate protein in two-compon	98.9
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.57
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.57
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	97.82
PRK10547	670	chemotaxis protein CheA; Provisional	97.78
PRK09959	1197	hybrid sensory histidine kinase in two-component r	96.77
PRK15347	921	two component system sensor kinase SsrA; Provision	96.41

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.96  E-value=4.6e-28  Score=179.10  Aligned_cols=136  Identities=33%  Similarity=0.550  Sum_probs=132.5

Q ss_pred             chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhh
Q 038079            3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHR   82 (144)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~   82 (144)
                      +..++.+...+-+|++++|++|++|.+|++|  +|++.|+||.+++..|++||++.+..|+.|+..+ .|+.+++.+-|.
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~l--qD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~-~d~k~~~~~~hq   81 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQEL--QDDSSPDFVEEVVGLFFEDSERLINNLRLALDCE-RDFKKLGSHVHQ   81 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHH
Confidence            4578999999999999999999999999999  9999999999999999999999999999999986 499999999999


Q ss_pred             hcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079           83 FKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ  141 (144)
Q Consensus        83 LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~  141 (144)
                      |||||++|||.++...|..+..+|+.++.++|...+.+++.||..++++|++|.+++||
T Consensus        82 lkgssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq  140 (150)
T KOG4747|consen   82 LKGSSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQ  140 (150)
T ss_pred             ccCchhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.67  E-value=8.9e-16  Score=110.23  Aligned_cols=95  Identities=24%  Similarity=0.423  Sum_probs=85.9

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhc-CCHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRN-GDIEGAKAA  117 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~-~~~~~~~~~  117 (144)
                      +.|+++.+++..|+++++..+..++.++..+  |+..+.+.||+||||++|+|+.+++.+|.++|..++. ...+....+
T Consensus        20 ~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~~   97 (122)
T COG2198          20 GDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEEL   97 (122)
T ss_pred             CChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            5699999999999999999999999999986  8899999999999999999999999999999999988 689999999


Q ss_pred             HHHHHHH--HHHHHHHHHHH
Q 038079          118 FEQVKTE--QGNLKAKLDSY  135 (144)
Q Consensus       118 l~~l~~e--f~~~~~aL~~~  135 (144)
                      +..++.+  ...+...+.++
T Consensus        98 i~~l~~~~~~~~~~~~~~~~  117 (122)
T COG2198          98 IAELKDELQLDVLALELLTY  117 (122)
T ss_pred             HHHHHHHhcchHHHHHHHHH
Confidence            9999999  54544444444

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.65  E-value=1.1e-15  Score=102.20  Aligned_cols=82  Identities=22%  Similarity=0.425  Sum_probs=71.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHh---ccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHH---HHHHHH
Q 038079           46 VTINVYFEESNELLPMIEDLL---GKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEG---AKAAFE  119 (144)
Q Consensus        46 ~Li~~f~~ds~~~l~~l~~al---~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~---~~~~l~  119 (144)
                      +|++.|+++++..+..|+.++   ..+  |++.+++.+|+|||+++++|+.+++.+|..+|..++.++.+.   +.+.+.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            589999999999999999999   654  899999999999999999999999999999999999998888   555555


Q ss_pred             HHHHHHHHHH
Q 038079          120 QVKTEQGNLK  129 (144)
Q Consensus       120 ~l~~ef~~~~  129 (144)
                      .+...+.++.
T Consensus        79 ~l~~~l~~l~   88 (90)
T PF01627_consen   79 ELEAMLEQLR   88 (90)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.52  E-value=1.9e-14  Score=96.55  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038079           46 VTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQ  125 (144)
Q Consensus        46 ~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef  125 (144)
                      +++..|+++.+..+..|..++..+  |+..+++.+|+||||++++|+..|..+|..+|...+... ++...+...+...|
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~~--~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~-~~~~~~~~~l~~~~   78 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDAQ--DVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR-SGEVELTPDLLDLL   78 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCHh--HHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHH
Confidence            678999999999999999999754  899999999999999999999999999999999888643 44456788888888


Q ss_pred             HHHHHHHH
Q 038079          126 GNLKAKLD  133 (144)
Q Consensus       126 ~~~~~aL~  133 (144)
                      ..+...|.
T Consensus        79 ~~~~~~l~   86 (87)
T smart00073       79 LELVDVLK   86 (87)
T ss_pred             HHHHHHHc
Confidence            88877664

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.41  E-value=4e-13  Score=91.82  Aligned_cols=64  Identities=27%  Similarity=0.343  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc----cCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCC
Q 038079           45 EVTINVYFEESNELLPMIEDLLG----KNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGD  110 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~----~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~  110 (144)
                      .+++..|+++.+..+..|..++.    .+  |+..+++.+|+||||++++|+.+|..+|..+|..++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~--d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAE--DLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998    44  899999999999999999999999999999999998753

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.37  E-value=2.4e-12  Score=117.44  Aligned_cols=93  Identities=16%  Similarity=0.293  Sum_probs=87.4

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF  118 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l  118 (144)
                      .+++.+.+++..|+++++..+..|..++..+  |+..+++.+|.|||+++++||.+++.+|..||..++.|+.  ....+
T Consensus       876 ~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~~  951 (968)
T TIGR02956       876 LGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSDI  951 (968)
T ss_pred             cCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhHH
Confidence            5688999999999999999999999999976  9999999999999999999999999999999999999988  45789


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 038079          119 EQVKTEQGNLKAKLDSY  135 (144)
Q Consensus       119 ~~l~~ef~~~~~aL~~~  135 (144)
                      +.++..|..+..+|++|
T Consensus       952 ~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       952 DEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999999875

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.12  E-value=5.6e-10  Score=100.59  Aligned_cols=100  Identities=14%  Similarity=0.204  Sum_probs=93.8

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF  118 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l  118 (144)
                      .++..+.+.+..|.+..+..+..|..++..+  |+..+...||.|||+++++|+..++.+|..+|.....+.++...+++
T Consensus       678 ~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  755 (779)
T PRK11091        678 VGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNVQDWV  755 (779)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHHHHHH
Confidence            4567788999999999999999999999976  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 038079          119 EQVKTEQGNLKAKLDSYFELVK  140 (144)
Q Consensus       119 ~~l~~ef~~~~~aL~~~l~~~~  140 (144)
                      ++++.+|.....+|+.|+...+
T Consensus       756 ~~l~~~~~~~~~~~~~~~~~~~  777 (779)
T PRK11091        756 EELKNEWRHDVEVLKAWLAQAE  777 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998654

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=98.90  E-value=6.6e-09  Score=96.31  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038079           43 FVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVK  122 (144)
Q Consensus        43 fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~  122 (144)
                      +...++..|++..|.-+..|..++.++  |+..+++.||.|||+++++|...++.+|.+||..++.++..++...+.+|.
T Consensus       808 ~~s~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id  885 (894)
T PRK10618        808 HASDYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDID  885 (894)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            344567899999999999999999986  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 038079          123 TEQGNL  128 (144)
Q Consensus       123 ~ef~~~  128 (144)
                      ..+.++
T Consensus       886 ~~v~~l  891 (894)
T PRK10618        886 SFVKSL  891 (894)
T ss_pred             HHHHHH
Confidence            877654

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.57  E-value=2.5e-07  Score=84.50  Aligned_cols=88  Identities=15%  Similarity=0.220  Sum_probs=72.2

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF  118 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l  118 (144)
                      .+++.+.+++..|.++++..+..++.+...+  |+..+++.||.|||+++++|+..++.+|.++|..+...         
T Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~---------  888 (914)
T PRK11466        820 MGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA---------  888 (914)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc---------
Confidence            4566788999999999999999999999976  89999999999999999999999999999999975422         


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 038079          119 EQVKTEQGNLKAKLDSYFE  137 (144)
Q Consensus       119 ~~l~~ef~~~~~aL~~~l~  137 (144)
                      ..+..++.+...+|..|+.
T Consensus       889 ~~~~~~~~~~~~~~~~~~~  907 (914)
T PRK11466        889 PLPHEEITRSVAALEAWLA  907 (914)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            2234455555666666654

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.57  E-value=7.2e-07  Score=81.13  Aligned_cols=97  Identities=15%  Similarity=0.337  Sum_probs=83.8

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcC-CHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNG-DIEGAKAA  117 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~-~~~~~~~~  117 (144)
                      +.++...+++..|.++.+..+..|..++...  |...+...+|++||+++++|+.++..+|..+|...+.+ ..+.....
T Consensus       821 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  898 (919)
T PRK11107        821 GKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEPE  898 (919)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence            4567888999999999999999999999975  78999999999999999999999999999999999876 45666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 038079          118 FEQVKTEQGNLKAKLDSYFE  137 (144)
Q Consensus       118 l~~l~~ef~~~~~aL~~~l~  137 (144)
                      +..+..++.++...+.++++
T Consensus       899 ~~~~~~~~~~~~~~~~~~~~  918 (919)
T PRK11107        899 LLELLDEMENVARAAKKVLS  918 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            77777777777777776653

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.82  E-value=0.00015  Score=66.27  Aligned_cols=71  Identities=25%  Similarity=0.404  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHhcc---CCCCH---HHHHHHHhhhcccccccChHHHHHHHHHHHHH---hhcCCHH
Q 038079           42 NFVEVTINVYFEESNELLPMIEDLLGK---NPIEG---SEMERILHRFKGSCASVGANKVKNEVNVVIAC---CRNGDIE  112 (144)
Q Consensus        42 ~fv~~Li~~f~~ds~~~l~~l~~al~~---~~~D~---~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~---~~~~~~~  112 (144)
                      +-..++...|++++++++..|..++-.   .+.|.   .++.+.||+|||+++.+|-..++++|-.+|..   .++|...
T Consensus         4 ~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~~   83 (716)
T COG0643           4 MDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGELE   83 (716)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCcc
Confidence            445788999999999999999986543   23343   46789999999999999999999999999974   4566433

>PRK10547 chemotaxis protein CheA; Provisional

Probab=97.78  E-value=0.00018  Score=65.36  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC  106 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~  106 (144)
                      .+++..|++++.++|+.|+..+-.   .+.|   ...+-+.+|+|||+|+.+|-..+..+|-.+|..-
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~ll   71 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLL   71 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHH
Confidence            478999999999999999987654   3334   3467889999999999999999999999999765

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=96.77  E-value=0.031  Score=53.03  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCC-HHHHHHHH
Q 038079           40 DPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGD-IEGAKAAF  118 (144)
Q Consensus        40 ~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~-~~~~~~~l  118 (144)
                      ......+++..+...+...+..+..+...+  |...++..+|.+||++..+|+..+...|.++|......+ .+.....+
T Consensus      1098 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~~ 1175 (1197)
T PRK09959       1098 DLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLL 1175 (1197)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHHH
Confidence            446778888999999999898888888876  779999999999999999999999999999998876543 34455556


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038079          119 EQVKTEQGNLKAKLDSYF  136 (144)
Q Consensus       119 ~~l~~ef~~~~~aL~~~l  136 (144)
                      +.+..........++.++
T Consensus      1176 ~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1176 NSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            655555555555555443

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.41  E-value=0.01  Score=54.27  Aligned_cols=62  Identities=21%  Similarity=0.318  Sum_probs=51.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHH
Q 038079           47 TINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIE  112 (144)
Q Consensus        47 Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~  112 (144)
                      +-..+.+.....+..+..++..+  |  .+++.+|.+||+++++|+.++...|.++|...+.+...
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~  899 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEIL  899 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCC
Confidence            44555566678888888888865  3  89999999999999999999999999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
4euk_B	159	Crystal Structure Length = 159		4e-10
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		3e-09
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		4e-09
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		2e-08

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 62/107 (57%)
Query: 38  DEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN 97
           + +P+FV   + ++F++S+ +L  +   L +  ++  +++  +H+ KGS +S+GA +VKN
Sbjct: 41  ESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKN 100
Query: 98  EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
              V  + C   ++E      +QVK E   +K +L++ F+L +Q  A
Sbjct: 101 ACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVA 147

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 6   LHQQIASMRQHLLDEEILDEQFVELEGLALASDE--DPNFVEVTINVYFEESNELLPMIE 63
           L  Q+ ++   +  + ++DEQF +L+ L    DE   P FV   + ++ ++++ ++  I 
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQML---QDEGGTPGFVSEVVTLFCDDADRIINEIA 62
Query: 64  DLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
            LL +  +   +++  +H+ KGS ASVGA KVK         C++   +G   A   V+ 
Sbjct: 63  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122
Query: 124 EQGNLKAKLDSYFELVKQAKA 144
           +  +L+ K  +  +L +Q +A
Sbjct: 123 DFYDLRNKFQTMLQLEQQIQA 143

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 58/105 (55%)
Query: 40  DPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV 99
           +P FV   ++++F++S  +L  +   + +  I+  +++  +H+FKGS AS+GA +VKN  
Sbjct: 38  NPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSC 97
Query: 100 NVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
                 C   +I+  +   +QVK E   +K KL++   L +Q  A
Sbjct: 98  VAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVA 142

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDED---PNFVEVTINVYFEESNE 57
           M +  L +Q+ ++   +    ++DEQF +L+ L     ED   P FV   + ++ ++++ 
Sbjct: 1   MAAAALREQLNALLSSMFASGLVDEQFQQLQML----QEDGGTPGFVAEVVTLFCDDADR 56
Query: 58  LLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAA 117
           ++  +  LL +  ++  +++  +H+ KGS ASVGA KVK         C++ + +G   A
Sbjct: 57  IISELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMA 116
Query: 118 FEQVKTEQGNLKAKLDS 134
              V+ E  +L+ K  +
Sbjct: 117 LAVVRNEFYDLRNKFQT 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3us6_A	153	Histidine-containing phosphotransfer protein type	2e-30
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	8e-30
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	1e-09
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	1e-08
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-05
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	2e-05

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  106 bits (265), Expect = 2e-30
 Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 1   MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
           ME   + +Q     + +  E  LD QF++L+   L  + +P FV   ++++F++S  +L 
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQ--QLQDENNPEFVFEVVSLFFDDSERILK 58

Query: 61  MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQ 120
            +   + +  I+  +++  +H+FKGS AS+GA +VKN        C   +I+  +   +Q
Sbjct: 59  DLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQ 118

Query: 121 VKTEQGNLKAKLDSYFELVKQAKA 144
           VK E   +K KL++   L +Q  A
Sbjct: 119 VKQEYLLVKNKLETLLRLEQQIVA 142

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  104 bits (261), Expect = 8e-30
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 6   LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDL 65
           L  Q+ ++   +  + ++DEQF +L+ L       P FV   + ++ ++++ ++  I  L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQML-QDEGGTPGFVSEVVTLFCDDADRIINEIATL 64

Query: 66  LGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQ 125
           L +  +   +++  +H+ KGS ASVGA KVK         C++   +G   A   V+ + 
Sbjct: 65  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124

Query: 126 GNLKAKLDSYFELVKQAKA 144
            +L+ K  +  +L +Q +A
Sbjct: 125 YDLRNKFQTMLQLEQQIQA 143

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 15/124 (12%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 10  IASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKN 69
           ++++   +++  IL  + + +       D+D +F +  I  + +++      ++  L   
Sbjct: 1   MSTIPSEIINWTIL-NEIISM------DDDDSDFSKGLIIQFIDQAQTTFAQMQRQL-DG 52

Query: 70  PIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLK 129
               +E++ + H  KGS A++G  ++      +    R  +                ++ 
Sbjct: 53  EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII 112

Query: 130 AKLD 133
             ++
Sbjct: 113 NGIN 116

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 19/123 (15%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 14  RQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEG 73
             H ++ ++L++Q +E     L+++   + V V ++++  E +  +  + +L G   +  
Sbjct: 3   HHHHMNTDVLNQQKIE----ELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLL- 57

Query: 74  SEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLD 133
             ++ I H  K S AS GA+++      +    +   ++       ++       +    
Sbjct: 58  -YLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYR 116

Query: 134 SYF 136
           S+ 
Sbjct: 117 SWT 119

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 15  QHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGS 74
           + LLD  +L EQ++EL G        P  +   + V+ +     + ++E  L     +  
Sbjct: 9   EALLDIPML-EQYLELVG--------PKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKK 57

Query: 75  EMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDS 134
            +    H+ KG+  SVG   ++     + +       +      E++K E  +    L +
Sbjct: 58  GIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKA 117

Query: 135 YFE 137
           +  
Sbjct: 118 WVA 120

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 8/121 (6%)

Query: 18  LDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEME 77
            D   L+        L  A+    N     + +  +   E +  I+  LG+N      M 
Sbjct: 1   FDLHTLNWD----LCLTQANH-KSNLALEMLKMLLDSLPETVEKIQTALGQNDQA--TML 53

Query: 78  RILHRFKGSCASVGANKVKNEVNVVIACCRNG-DIEGAKAAFEQVKTEQGNLKAKLDSYF 136
             +H+  G+    G    +     + +  +    +E  +    ++  E   +++ +    
Sbjct: 54  STIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVL 113

Query: 137 E 137
            
Sbjct: 114 S 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	100.0
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.96
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.89
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.81
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.78
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.76
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.74
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.64
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.55
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.39
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.36
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.34
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	98.96
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.61

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=9.5e-39  Score=238.59  Aligned_cols=141  Identities=28%  Similarity=0.499  Sum_probs=137.0

Q ss_pred             CCchhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Q 038079            1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERIL   80 (144)
Q Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~a   80 (144)
                      |.+.+|+.++..++++++++|+||++|++|+.|  +++++|+|+.++|.+|++|+++.+..|+.++++++.|+..++++|
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L--~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~a   78 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQL--QDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHV   78 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHT--CBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence            788999999999999999999999999999999  999999999999999999999999999999998767999999999


Q ss_pred             hhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038079           81 HRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAK  143 (144)
Q Consensus        81 H~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~~  143 (144)
                      |+|||||+||||.+|+.+|..+|.+++.++.+++..++.+|+.+|.+++.+|++|+++++|+.
T Consensus        79 H~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~  141 (153)
T 3us6_A           79 HQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIV  141 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999985

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=100.00  E-value=6.7e-37  Score=227.04  Aligned_cols=140  Identities=25%  Similarity=0.473  Sum_probs=133.1

Q ss_pred             chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCC-hhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 038079            3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDED-PNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILH   81 (144)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~-~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH   81 (144)
                      +++|+.|+..++++++++|+||++|++|+.|  +++++ |+|+.+||.+|++|+++.+..|+.|++++++|+..+++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L--~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH   80 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQFQQLQML--QDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVH   80 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHH--HC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHh--hCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            5789999999999999999999999999999  89888 99999999999999999999999999987679999999999


Q ss_pred             hhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038079           82 RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA  144 (144)
Q Consensus        82 ~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~~~  144 (144)
                      +|||||+||||.+|+.+|.++|..++.++++++..++.+++.+|..++.+|++|+++++|+.+
T Consensus        81 ~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~  143 (149)
T 1yvi_A           81 QLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA  143 (149)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999864

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.96  E-value=4.9e-30  Score=193.78  Aligned_cols=118  Identities=17%  Similarity=0.285  Sum_probs=110.8

Q ss_pred             cccchhhhHH-HHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHH
Q 038079           16 HLLDEEILDE-QFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK   94 (144)
Q Consensus        16 ~~~~~~~lD~-~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~   94 (144)
                      +|.++|+||+ +|++|+.|  ++++ |+|+.+||.+|++|+++++..|++|++ .+.||.+++.+||+||||||||||.+
T Consensus         2 ~~~~~~~LD~~~f~qL~el--~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~r   77 (167)
T 2r25_A            2 STIPSEIINWTILNEIISM--DDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQR   77 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHT--TTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCCcCCcCHHHHHHHHHh--cccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHH
Confidence            5788999998 69999999  8887 999999999999999999999999999 23599999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCC------------HH--------------------------------HHHHHHHHHHHHHHHHHH
Q 038079           95 VKNEVNVVIACCRNGD------------IE--------------------------------GAKAAFEQVKTEQGNLKA  130 (144)
Q Consensus        95 l~~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~  130 (144)
                      |+.+|.+||.+|+.++            .+                                +|...|.+++.||..++.
T Consensus        78 V~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~  157 (167)
T 2r25_A           78 IAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARI  157 (167)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998            44                                789999999999999999


Q ss_pred             HHHHHHH
Q 038079          131 KLDSYFE  137 (144)
Q Consensus       131 aL~~~l~  137 (144)
                      +|++|++
T Consensus       158 ~L~~~~~  164 (167)
T 2r25_A          158 ELSKYYN  164 (167)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHc
Confidence            9999975

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.89  E-value=3.2e-23  Score=148.42  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=107.7

Q ss_pred             ccchhhhHHH-HHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHH
Q 038079           17 LLDEEILDEQ-FVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKV   95 (144)
Q Consensus        17 ~~~~~~lD~~-~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l   95 (144)
                      +...++||+. +.+|+.+     .|++|+.+++..|++++++.+..|..++..+  |+..+++.||+|||||+|+|+.+|
T Consensus         6 ~~~~~~lD~~~l~~l~~~-----~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l   78 (125)
T 2a0b_A            6 SKSEALLDIPMLEQYLEL-----VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHL   78 (125)
T ss_dssp             CHHHHHSCHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccCCHHHHHHHHHH-----hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3456788986 7788877     7899999999999999999999999999976  899999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079           96 KNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELV  139 (144)
Q Consensus        96 ~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~  139 (144)
                      +.+|..+|..++.++.+++..++..|..+|.+++.+|..|+.-.
T Consensus        79 ~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~  122 (125)
T 2a0b_A           79 QQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA  122 (125)
T ss_dssp             HHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998754

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.81  E-value=3.2e-19  Score=127.62  Aligned_cols=114  Identities=12%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             cchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHH
Q 038079           18 LDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN   97 (144)
Q Consensus        18 ~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~   97 (144)
                      ||..++|++  .+..+   -.|+|++..+++.+|+++.|+.+..|+.+++.+  |++.+.+.+|+|||||+++||.+|..
T Consensus         1 ~~~~~~D~~--~~l~~---~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~   73 (119)
T 3myf_A            1 FDLHTLNWD--LCLTQ---ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQR   73 (119)
T ss_dssp             -CTTTCCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHH
T ss_pred             CCccccCHH--HHHHH---hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            466788886  22222   127899999999999999999999999999986  89999999999999999999999999


Q ss_pred             HHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079           98 EVNVVIACCRNGD-IEGAKAAFEQVKTEQGNLKAKLDSYFEL  138 (144)
Q Consensus        98 ~c~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~aL~~~l~~  138 (144)
                      +|..||..++.+. .+.....+..+..+...+..+++.|+..
T Consensus        74 ~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~  115 (119)
T 3myf_A           74 LCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ  115 (119)
T ss_dssp             HHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999985 5788889999999999999999999873

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.78  E-value=2.8e-21  Score=138.48  Aligned_cols=109  Identities=17%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             hhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHH
Q 038079           21 EILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVN  100 (144)
Q Consensus        21 ~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~  100 (144)
                      +.+|+.  .|..|  +++.||+++.++++.|+++++++|..|+.+.+.+  |+..+.+.+|+|||||+|+||.+|+.+|.
T Consensus        10 ~~~d~~--~l~~L--~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~   83 (120)
T 1y6d_A           10 DVLNQQ--KIEEL--SAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI   83 (120)
T ss_dssp             TTTTTT--HHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             ccccHH--HHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHH
Confidence            556653  55555  5558899999999999999999999999987765  77889999999999999999999999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079          101 VVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSY  135 (144)
Q Consensus       101 ~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~  135 (144)
                      .+|..+|.|+...+......+...+.+++..+..+
T Consensus        84 ~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           84 AIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999887755445555555566666666554

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.76  E-value=3.2e-18  Score=123.20  Aligned_cols=110  Identities=16%  Similarity=0.253  Sum_probs=96.5

Q ss_pred             hhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHH
Q 038079           20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV   99 (144)
Q Consensus        20 ~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c   99 (144)
                      .+++|++  .+..+   -.|+|++..+|+.+|+++.|+.+..|+.++..+  |++.+++.+|+|||||+++||.+|..+|
T Consensus        12 ~~~~D~~--~~l~~---a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c   84 (123)
T 3iqt_A           12 NATLDWQ--LALRQ---AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC   84 (123)
T ss_dssp             GGTCCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred             CCccCHH--HHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            3678875  33333   227799999999999999999999999999986  8899999999999999999999999999


Q ss_pred             HHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079          100 NVVIACCRNGDI-EGAKAAFEQVKTEQGNLKAKLDSYF  136 (144)
Q Consensus       100 ~~lE~~~~~~~~-~~~~~~l~~l~~ef~~~~~aL~~~l  136 (144)
                      ..||..++.|+. +.....+..+..+...+..+.++|+
T Consensus        85 ~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           85 QLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999864 4778888999999999999998885

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.74  E-value=2.2e-18  Score=122.18  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=85.9

Q ss_pred             hhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHH
Q 038079           20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV   99 (144)
Q Consensus        20 ~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c   99 (144)
                      .+.+|.+  .|..+   ..|+|+|+.+|+.+|++++++.+..|..+  .  .|+   ++.||+|||||+||||.+|+.+|
T Consensus         8 ~~~iD~~--~L~~~---~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~--~~~---~~~aH~LKGsA~~iGA~~l~~~c   75 (113)
T 2ooc_A            8 SGAVDFA--YLEGF---AAGDFAVVDEVLALFREQAALWAPMLDPT--H--PGW---KDAVHTVKGAARGVGAFNLGEVC   75 (113)
T ss_dssp             -CCSCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--S--TTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCcCHH--HHHhH---hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--h--HHH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence            3456654  33333   34789999999999999999999999988  2  254   89999999999999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079          100 NVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFEL  138 (144)
Q Consensus       100 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~  138 (144)
                      ..+|..++.     ....+..|+..+.+++.+|..+++.
T Consensus        76 ~~lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~  109 (113)
T 2ooc_A           76 ERCEAGQES-----LEGVRTALDAALLDIAAYAHEQALR  109 (113)
T ss_dssp             HHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999877     5678899999999999999988763

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.64  E-value=3e-16  Score=111.86  Aligned_cols=88  Identities=11%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF  118 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l  118 (144)
                      +.+..-.+++.+|+++.++.+..|+.++.++  |+..+++.||+||||++++|+..++.+|.++|..++.++.+.+...+
T Consensus        28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i  105 (116)
T 1sr2_A           28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI  105 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4456788999999999999999999999986  89999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHH
Q 038079          119 EQVKTEQGNL  128 (144)
Q Consensus       119 ~~l~~ef~~~  128 (144)
                      ..|+..+.++
T Consensus       106 ~~L~~~l~~L  115 (116)
T 1sr2_A          106 SDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888876654

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.55  E-value=7.4e-15  Score=101.77  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHH
Q 038079           44 VEVTINVYFEESNELLPMIEDLLGK------NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGA  114 (144)
Q Consensus        44 v~~Li~~f~~ds~~~l~~l~~al~~------~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~  114 (144)
                      +.+++..|++++++.+..|+.++..      ...++..+.+.+|+|||||+++|+..+..+|..+|...   +.+.....
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~   82 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT   82 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4789999999999999999999952      11357899999999999999999999999999999876   67777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 038079          115 KAAFEQVKTEQGNLKAKLDS  134 (144)
Q Consensus       115 ~~~l~~l~~ef~~~~~aL~~  134 (144)
                      ..+++.+...+..++..+..
T Consensus        83 ~~~~~~l~~~~d~l~~~l~~  102 (105)
T 1tqg_A           83 SDLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            78888888888877766654

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.39  E-value=5.2e-13  Score=97.34  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK------NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~------~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~  115 (144)
                      .+++..|++++++.|..|..++..      +..++..+.+.+|+|||||+++|+..++.+|..+|...   +.|......
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~   82 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            478999999999999999999941      12367899999999999999999999999999999865   666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 038079          116 AAFEQVKTEQGNLKAKLDSY  135 (144)
Q Consensus       116 ~~l~~l~~ef~~~~~aL~~~  135 (144)
                      ..++.+...+..++..+..+
T Consensus        83 ~l~~~l~~~~D~l~~~l~~~  102 (139)
T 2ld6_A           83 DLLDKIFAGVDMITRMVDKI  102 (139)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666555543

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.36  E-value=7.7e-13  Score=97.23  Aligned_cols=89  Identities=18%  Similarity=0.302  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CC---CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHH---hhcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NP---IEGSEMERILHRFKGSCASVGANKVKNEVNVVIAC---CRNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~---~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~---~~~~~~~~~~  115 (144)
                      .+++..|++++++.|..|+.++..   ++   .++..+.+.+|+|||||+++|+..++.+|..+|..   .+.+......
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~   85 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            478999999999999999999933   11   24589999999999999999999999999999987   6777655445


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038079          116 AAFEQVKTEQGNLKAKLD  133 (144)
Q Consensus       116 ~~l~~l~~ef~~~~~aL~  133 (144)
                      .+++.+...+..++..+.
T Consensus        86 ~l~~~l~~~~D~l~~~l~  103 (146)
T 1i5n_A           86 DIINLFLETKDIMQEQLD  103 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555544444

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.34  E-value=1.3e-12  Score=91.80  Aligned_cols=89  Identities=20%  Similarity=0.298  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CCC---CHHHHHHHHhhhcccccccChHHHHHHHHHHHH---HhhcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NPI---EGSEMERILHRFKGSCASVGANKVKNEVNVVIA---CCRNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~---D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~---~~~~~~~~~~~  115 (144)
                      .+++..|+++++++|..|..++..   ++.   ++..+.+.+|+|||||+++|...++.+|..+|.   ..+.+......
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~   84 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS   84 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            588999999999999999999843   112   356799999999999999999999999999996   44677766667


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038079          116 AAFEQVKTEQGNLKAKLD  133 (144)
Q Consensus       116 ~~l~~l~~ef~~~~~aL~  133 (144)
                      .+++.+...+..+...+.
T Consensus        85 ~l~~~l~~~~d~l~~~l~  102 (113)
T 2lch_A           85 DLIDKVKKKLDMVTRELD  102 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777766665554

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=98.96  E-value=1.8e-09  Score=79.29  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHH
Q 038079           44 VEVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGA  114 (144)
Q Consensus        44 v~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~  114 (144)
                      ..+++..|+++++++|..|...+..   ++.|   ...+.+.+|+|||||+.+|...+..+|-.+|..-   +.+...--
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            4689999999999999999998753   2223   4579999999999999999999999999999854   55543333


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 038079          115 KAAFEQVKTEQGNLKAKLD  133 (144)
Q Consensus       115 ~~~l~~l~~ef~~~~~aL~  133 (144)
                      ..+++.+-..+..+...+.
T Consensus        89 ~~l~dlll~~~D~l~~lv~  107 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLE  107 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555554444444333

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.61  E-value=7.9e-08  Score=74.75  Aligned_cols=79  Identities=18%  Similarity=0.280  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~  115 (144)
                      .++++.|++++.++|..|...+-.   ++.|   ...+.+.+|+|||||+.+|...+..+|-.+|..-   |+|...--.
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~   85 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            467899999999999999998754   3334   3578899999999999999999999999999765   455433223


Q ss_pred             HHHHHHHH
Q 038079          116 AAFEQVKT  123 (144)
Q Consensus       116 ~~l~~l~~  123 (144)
                      .+++.+-.
T Consensus        86 ~~~~ll~~   93 (225)
T 2lp4_A           86 DIINLFLE   93 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	2e-26
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	1e-09
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	2e-09
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	1e-06
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	3e-06

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 94.2 bits (234), Expect = 2e-26
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 3   SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMI 62
           +  L  Q+ ++   +  + ++DEQF +L+ L       P FV   + ++ ++++ ++  I
Sbjct: 2   AAALRDQLTALLSSMFSQGLVDEQFQQLQML-QDEGGTPGFVSEVVTLFCDDADRIINEI 60

Query: 63  EDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVK 122
             LL +  +   +++  +H+ KGS ASVGA KVK         C++   +G   A   V+
Sbjct: 61  ATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVR 120

Query: 123 TEQGNLKAKLDSYFELVKQ 141
            +  +L+ K  +  +L +Q
Sbjct: 121 NDFYDLRNKFQTMLQLEQQ 139

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (120), Expect = 1e-09
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 19  DEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMER 78
            E +LD   +E           P  +   + V+ +     + ++E  L     +   +  
Sbjct: 3   SEALLDIPMLE----QYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKK--GIVE 56

Query: 79  ILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFE 137
             H+ KG+  SVG   ++     + +       +      E++K E  +    L ++  
Sbjct: 57  EGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 115

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 17  LLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEM 76
           L++ ++  E+    E      +           ++ +   + +  +      +      +
Sbjct: 8   LIEVQLAQEEV--TESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFA--AL 63

Query: 77  ERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
            +  HR KG  A +     K     +    R  D+ G +     + + 
Sbjct: 64  AQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSY 111

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 17/107 (15%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 18  LDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEME 77
           ++ ++L++Q +E     L+++   + V V ++++  E +  +  + +L G   +    ++
Sbjct: 1   MNTDVLNQQKIE----ELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLL--YLK 54

Query: 78  RILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
            I H  K S AS GA+++      +    +   ++       ++   
Sbjct: 55  EISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLAL 101

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 18  LDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEME 77
           +  EI++     L  +    D+D +F +  I  + +++      ++  L       +E++
Sbjct: 3   IPSEIINWT--ILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNL-TELD 59

Query: 78  RILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLD 133
            + H  KGS A++G  ++      +    R  +                ++   ++
Sbjct: 60  NLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGIN 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	100.0
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.9
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.89
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.85
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.81
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.69
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.0
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	98.91
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	84.85

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=4.8e-35  Score=213.73  Aligned_cols=140  Identities=25%  Similarity=0.466  Sum_probs=132.7

Q ss_pred             chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcC-CCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 038079            3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALAS-DEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILH   81 (144)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~-~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH   81 (144)
                      .++|++++.+++.+++++|++|.+|.+|..|  .+ .++|+|+.+||+.|++|+++.+..|.++++.++.||+.+++.||
T Consensus         2 ~~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l--~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH   79 (142)
T d1yvia1           2 AAALRDQLTALLSSMFSQGLVDEQFQQLQML--QDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVH   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHH--HC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHhcccccHHHHHHHHH--HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4689999999999999999999999999988  55 57799999999999999999999999999876679999999999


Q ss_pred             hhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038079           82 RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA  144 (144)
Q Consensus        82 ~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~~~  144 (144)
                      +|||||+|+||.+++.+|..+|.++++++++++..++.+|+.+|..++.+|++|+++++||.|
T Consensus        80 ~LKGss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi~~  142 (142)
T d1yvia1          80 QLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA  142 (142)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Confidence            999999999999999999999999999999999999999999999999999999999999976

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.3e-24  Score=149.60  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             chhhhHHH-HHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHH
Q 038079           19 DEEILDEQ-FVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN   97 (144)
Q Consensus        19 ~~~~lD~~-~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~   97 (144)
                      .+++||.. +.++...     .||+++.+++..|++++|+.+..|+.++.++  |+..+++.||+|||||+++|+.+++.
T Consensus         3 ~e~~lD~~~L~~l~~~-----~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~   75 (118)
T d2a0ba_           3 SEALLDIPMLEQYLEL-----VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ   75 (118)
T ss_dssp             HHHHSCHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccCCHHHHHHHHHH-----hCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            35677775 6677766     6799999999999999999999999999986  99999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079           98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFEL  138 (144)
Q Consensus        98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~  138 (144)
                      +|.++|..++.++.+.+..++..|+.+|..+..+|+.|+..
T Consensus        76 ~~~~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~  116 (118)
T d2a0ba_          76 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  116 (118)
T ss_dssp             HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999874

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.2e-23  Score=153.10  Aligned_cols=116  Identities=18%  Similarity=0.303  Sum_probs=103.5

Q ss_pred             cchhhhHHH-HHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHH
Q 038079           18 LDEEILDEQ-FVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVK   96 (144)
Q Consensus        18 ~~~~~lD~~-~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~   96 (144)
                      +-.++||+. |.+|..|  . +++|+|+.+||..|+++++..+..|++++.+. .|+.+++++||+|||||+||||.+++
T Consensus         3 ~p~~~id~~~l~~l~~m--~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~-~d~~~l~~~aH~lKgss~~~G~~~~~   78 (166)
T d2r25a1           3 IPSEIINWTILNEIISM--D-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGE-KNLTELDNLGHFLKGSSAALGLQRIA   78 (166)
T ss_dssp             CCSCSSCHHHHHHHHHT--T-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccccCHHHHHHHHHH--h-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            345789996 9999999  4 57899999999999999999999999999752 39999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC--------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 038079           97 NEVNVVIACCRNGD--------------------------------------------IEGAKAAFEQVKTEQGNLKAKL  132 (144)
Q Consensus        97 ~~c~~lE~~~~~~~--------------------------------------------~~~~~~~l~~l~~ef~~~~~aL  132 (144)
                      .+|..||++++.++                                            ...+...+.+.+.+|..++..|
T Consensus        79 ~~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L  158 (166)
T d2r25a1          79 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL  158 (166)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998642                                            3346788999999999999999


Q ss_pred             HHHHH
Q 038079          133 DSYFE  137 (144)
Q Consensus       133 ~~~l~  137 (144)
                      ..|++
T Consensus       159 ~~~~~  163 (166)
T d2r25a1         159 SKYYN  163 (166)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99975

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.85  E-value=1.6e-23  Score=145.71  Aligned_cols=111  Identities=16%  Similarity=0.261  Sum_probs=102.2

Q ss_pred             chhhhHHH-HHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHH
Q 038079           19 DEEILDEQ-FVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN   97 (144)
Q Consensus        19 ~~~~lD~~-~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~   97 (144)
                      ++++||+. +++|...     .|++++.+|+..|+++++..+..|++++.++  |++.+++.||+|||||+|+||.+|+.
T Consensus         2 ~~~lld~~~l~~L~~~-----~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~   74 (114)
T d1y6da_           2 NTDVLNQQKIEELSAE-----IGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCE   74 (114)
T ss_dssp             CCTTTTTTHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             CHHHCCHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            45788885 7776655     6689999999999999999999999999986  99999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079           98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYF  136 (144)
Q Consensus        98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l  136 (144)
                      +|..||..++.++.+.+...+..+...+.+++.+++.|.
T Consensus        75 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          75 RAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999998874

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-21  Score=136.02  Aligned_cols=88  Identities=11%  Similarity=0.128  Sum_probs=83.2

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079           39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF  118 (144)
Q Consensus        39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l  118 (144)
                      +.+.|+.+++.+|++++|..+..|+.+++++  |+..+++.||+|||||+|+||.+++.+|..||..++.++.+.+..++
T Consensus        28 ~~~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll  105 (116)
T d1sr2a_          28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI  105 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3356899999999999999999999999987  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 038079          119 EQVKTEQGNL  128 (144)
Q Consensus       119 ~~l~~ef~~~  128 (144)
                      .+|+.++.++
T Consensus       106 ~~le~~~~~l  115 (116)
T d1sr2a_         106 SDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.69  E-value=1e-17  Score=115.55  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=73.7

Q ss_pred             hhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHH
Q 038079           21 EILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVN  100 (144)
Q Consensus        21 ~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~  100 (144)
                      |.||+.  .|..+  -. |+++|+.+|+.+|+++++..+..+    .   .|++.+++.||+|||||+||||.+|+.+|.
T Consensus         1 gaiD~~--~L~~~--~g-gd~~l~~~ll~~F~e~~~~~~~~l----~---~d~~~~~~~aH~LKGsa~~iGa~~L~~~a~   68 (104)
T d2ooca1           1 GAVDFA--YLEGF--AA-GDFAVVDEVLALFREQAALWAPML----D---PTHPGWKDAVHTVKGAARGVGAFNLGEVCE   68 (104)
T ss_dssp             CCSCHH--HHHHH--TT-TCHHHHHHHHHHHHHHHHHHGGGC----S---TTSTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CccCHH--HHHHH--hC-CCHHHHHHHHHHHHHHHHHHHHHH----c---cCHHHHHHHHHHHHhHHHHcCHHHHHHHHH
Confidence            456654  66666  33 789999999999999999987554    2   278899999999999999999999999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079          101 VVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFE  137 (144)
Q Consensus       101 ~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~  137 (144)
                      +||..++.++         .+..++......+..|+.
T Consensus        69 ~lE~~~~~~~---------~~~~~l~~~~~~i~~~~~   96 (104)
T d2ooca1          69 RCEAGQESLE---------GVRTALDAALLDIAAYAH   96 (104)
T ss_dssp             HHHTTSSCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccC---------chHHHHHHHHHHHHHHHH
Confidence            9999887532         233445555555555544

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=8e-10  Score=74.64  Aligned_cols=85  Identities=21%  Similarity=0.320  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~  115 (144)
                      .++++.|++++++++..|+..+..   ++.|   ...+.+.+|+|||||+.+|...++.+|..+|.+-   +.+...--.
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~   83 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   83 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            478899999999999999998843   2223   4578899999999999999999999999999763   445433334


Q ss_pred             HHHHHHHHHHHHHH
Q 038079          116 AAFEQVKTEQGNLK  129 (144)
Q Consensus       116 ~~l~~l~~ef~~~~  129 (144)
                      ..++.+...+..++
T Consensus        84 ~~~~~l~~~~d~l~   97 (105)
T d1tqga_          84 DLLDKIFAGVDMIT   97 (105)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444443333

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.91  E-value=1.8e-09  Score=75.13  Aligned_cols=81  Identities=17%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcc---CCCCH---HHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079           45 EVTINVYFEESNELLPMIEDLLGK---NPIEG---SEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK  115 (144)
Q Consensus        45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~D~---~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~  115 (144)
                      .++++.|++++.+++..|+..+..   ++.|.   ..+.+.+|+|||||+.+|...+..+|..+|..-   +.+...--.
T Consensus         3 ~e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~   82 (128)
T d1i5na_           3 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   82 (128)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            357899999999999999998733   33343   478899999999999999999999999999864   345433333


Q ss_pred             HHHHHHHHHH
Q 038079          116 AAFEQVKTEQ  125 (144)
Q Consensus       116 ~~l~~l~~ef  125 (144)
                      ..++.+...+
T Consensus        83 ~~~~~l~~~~   92 (128)
T d1i5na_          83 DIINLFLETK   92 (128)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344444433

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.5  Score=28.12  Aligned_cols=39  Identities=18%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             hHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 038079           23 LDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIE   63 (144)
Q Consensus        23 lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~   63 (144)
                      +|....+++.|  -++-|+.|+...++-|-.|+++.+..|=
T Consensus         6 l~s~I~qV~Dl--~PdLG~GFi~~~L~~Y~~n~E~vI~~lL   44 (63)
T d2di0a1           6 LDSLISQVKDL--LPDLGEGFILACLEYYHYDPEQVINNIL   44 (63)
T ss_dssp             HHHHHHHHHHH--CCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence            56667889999  8999999999999999999999888763