Citrus Sinensis ID: 038085

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKSR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MILQLLLLLYLGEKLKLLFDvadidlsssicivfgccpddwqsnwgedefpdmAKASVALSFLAFVALGFSSLISGYalynqksr
Flexible Loop (DISEMBL)
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLIsgyalynqksr
Low Complexity Region (SEG)
MIlqlllllylgeklkllFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKSR
Disordered region (IsUnstruct)
*ILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALY*****
Disordered Region (DISOPRED)
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ***
Disordered Region (DISEMBL)
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKSR
Disordered Region (DISPRO)
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILQLLLLLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q84WP5	283	CASP-like protein At2g363	yes	no	0.541	0.162	0.717	2e-14
D7LIR2	276	CASP-like protein ARALYDR	N/A	no	0.541	0.166	0.673	2e-13
Q9FNE8	270	CASP-like protein At5g403	no	no	0.776	0.244	0.513	2e-12
Q501G6	297	CASP-like protein At5g628	no	no	0.541	0.154	0.608	4e-10
D7MMW4	297	CASP-like protein ARALYDR	N/A	no	0.541	0.154	0.608	8e-10
A3A2W2	308	CASP-like protein Os02g01	yes	no	0.505	0.139	0.511	7e-08
B6TWJ1	306	CASP-like protein 15 OS=Z	N/A	no	0.505	0.140	0.511	2e-07
C4JAF2	302	CASP-like protein 14 OS=Z	N/A	no	0.505	0.142	0.511	6e-07
C5XTX2	452	CASP-like protein Sb04g00	N/A	no	0.505	0.095	0.511	1e-06

>sp|Q84WP5|CSPL8_ARATH CASP-like protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 39/46 (84%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+DEF +MA AS+A+SFLAF+A  FSSLISGY L+NQ S
Sbjct: 237 DDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282

Arabidopsis thaliana (taxid: 3702)

>sp|D7LIR2|CSPLI_ARALL CASP-like protein ARALYDRAFT_482607 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482607 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+D+F +MA AS+A+SFL F+A  FSSLISGY L+NQ S
Sbjct: 230 DDWVSNWGKDDFTEMASASIAMSFLTFLAFAFSSLISGYNLFNQDS 275

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q9FNE8|CSPLV_ARATH CASP-like protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 8   LLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVA 67
            L  G    L + +A    S+SI +      DDWQSNWG D+FPD+A+ASVALS+++FVA
Sbjct: 199 FLEFGLDQMLAYLLASASTSASIRV------DDWQSNWGADKFPDLARASVALSYVSFVA 252

Query: 68  LGFSSLISGYAL 79
             F SL SGYAL
Sbjct: 253 FAFCSLASGYAL 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G6|CSPLY_ARATH CASP-like protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 33/46 (71%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+DEF  MA AS+A+SFLAF A   S+LIS Y L+   S
Sbjct: 251 DDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296

Arabidopsis thaliana (taxid: 3702)

>sp|D7MMW4|CSPLJ_ARALL CASP-like protein ARALYDRAFT_919556 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919556 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 33/46 (71%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+DEF  MA AS+A+SFLAF A   S+LIS Y L+   S
Sbjct: 251 DDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|A3A2W2|CSPLO_ORYSJ CASP-like protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 40  DWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           DW  NWG D FP MA +S+A+SF+AF+    S+LIS Y L+ +
Sbjct: 264 DWIDNWGSDPFPKMANSSIAISFMAFLVFAISALISAYNLFRR 306

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B6TWJ1|CSPLF_MAIZE CASP-like protein 15 OS=Zea mays PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 40  DWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           D   NWG D FP+MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct: 262 DLTENWGSDSFPNMANGSIAISFVAFVVFAICSLISAYNLFRR 304

Zea mays (taxid: 4577)

>sp|C4JAF2|CSPLE_MAIZE CASP-like protein 14 OS=Zea mays PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 40  DWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           D   NWG D FP MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct: 258 DLIENWGSDSFPSMANGSIAISFVAFVVFAICSLISAYNLFRR 300

Zea mays (taxid: 4577)

>sp|C5XTX2|CSPL8_SORBI CASP-like protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 26/43 (60%)

Query: 40  DWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           D   NWG D FP MA  S+A+SFLAF      SLIS Y L+ +
Sbjct: 408 DLIDNWGSDPFPSMANGSIAISFLAFAVFAICSLISAYNLFRR 450

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
4510344	431	hypothetical protein [Arabidopsis thalia	0.8	0.157	0.527	6e-13
145360675	283	uncharacterized protein [Arabidopsis tha	0.541	0.162	0.717	9e-13
225457050	314	PREDICTED: CASP-like protein At2g36330 [	0.517	0.140	0.727	4e-12
255540689	306	conserved hypothetical protein [Ricinus	0.541	0.150	0.695	6e-12
297823443	276	hypothetical protein ARALYDRAFT_482607 [	0.541	0.166	0.673	7e-12
388511155	288	unknown [Medicago truncatula]	0.517	0.152	0.704	1e-11
224119318	282	predicted protein [Populus trichocarpa]	0.541	0.163	0.652	3e-11
225452466	285	PREDICTED: CASP-like protein At2g36330-l	0.494	0.147	0.714	5e-11
297733792	130	unnamed protein product [Vitis vinifera]	0.529	0.346	0.711	7e-11
15242642	270	uncharacterized protein [Arabidopsis tha	0.776	0.244	0.513	9e-11

>gi|4510344|gb|AAD21433.1| hypothetical protein [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 6/74 (8%)

Query: 11  LGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGF 70
           +   L+ LF+   ID ++++  V     DDW SNWG+DEF +MA AS+A+SFLAF+A  F
Sbjct: 363 ISHHLRPLFEFI-IDQATAVTRV-----DDWVSNWGKDEFTEMASASIAMSFLAFLAFAF 416

Query: 71  SSLISGYALYNQKS 84
           SSLISGY L+NQ S
Sbjct: 417 SSLISGYNLFNQGS 430

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360675|ref|NP_181174.2| uncharacterized protein [Arabidopsis thaliana] gi|75148783|sp|Q84WP5.1|CSPL8_ARATH RecName: Full=CASP-like protein At2g36330 gi|27754604|gb|AAO22748.1| unknown protein [Arabidopsis thaliana] gi|330254140|gb|AEC09234.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 39/46 (84%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+DEF +MA AS+A+SFLAF+A  FSSLISGY L+NQ S
Sbjct: 237 DDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457050|ref|XP_002279713.1| PREDICTED: CASP-like protein At2g36330 [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           DDWQSNWG+DEF +MA AS+ +SFLAFVA  FSSLISGY L N+
Sbjct: 268 DDWQSNWGKDEFTEMASASIGMSFLAFVAFAFSSLISGYNLCNR 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540689|ref|XP_002511409.1| conserved hypothetical protein [Ricinus communis] gi|223550524|gb|EEF52011.1| conserved hypothetical protein [Ricinus communis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDWQSNWG+DEF +MA ASVA++ LAF+A   SSLISGY LYN  S
Sbjct: 260 DDWQSNWGKDEFTEMATASVAMALLAFIAFAVSSLISGYNLYNNGS 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823443|ref|XP_002879604.1| hypothetical protein ARALYDRAFT_482607 [Arabidopsis lyrata subsp. lyrata] gi|391358736|sp|D7LIR2.1|CSPLI_ARALL RecName: Full=CASP-like protein ARALYDRAFT_482607 gi|297325443|gb|EFH55863.1| hypothetical protein ARALYDRAFT_482607 [Arabidopsis lyrata subsp. lyrata]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDW SNWG+D+F +MA AS+A+SFL F+A  FSSLISGY L+NQ S
Sbjct: 230 DDWVSNWGKDDFTEMASASIAMSFLTFLAFAFSSLISGYNLFNQDS 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511155|gb|AFK43639.1| unknown [Medicago truncatula]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82
           DDWQSNWG+DEF +MA AS+AL+FLAF+A   SSLISGY L N+
Sbjct: 243 DDWQSNWGKDEFTEMASASIALAFLAFIAFAISSLISGYNLCNR 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119318|ref|XP_002318041.1| predicted protein [Populus trichocarpa] gi|118482435|gb|ABK93140.1| unknown [Populus trichocarpa] gi|222858714|gb|EEE96261.1| predicted protein [Populus trichocarpa]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
           DDWQSNWG+DEF +MA ASV ++FLAF+A   SS+ISGY LYN+ +
Sbjct: 236 DDWQSNWGKDEFTEMATASVVMAFLAFIAYAGSSIISGYNLYNRDA 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452466|ref|XP_002274501.1| PREDICTED: CASP-like protein At2g36330-like [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALY 80
           +DWQSNWG+D+FP+MA+ASV +SFLAFVA   SSLISGY L+
Sbjct: 239 EDWQSNWGKDKFPEMARASVWMSFLAFVAFAASSLISGYFLF 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733792|emb|CBI15039.3| unnamed protein product [Vitis vinifera]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 39  DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQK 83
           DDWQSNWG+DEF +MA AS+ +SFLAFVA  FSSLISGY L N+ 
Sbjct: 84  DDWQSNWGKDEFTEMASASIGMSFLAFVAFAFSSLISGYNLCNRN 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242642|ref|NP_198846.1| uncharacterized protein [Arabidopsis thaliana] gi|75171836|sp|Q9FNE8.1|CSPLV_ARATH RecName: Full=CASP-like protein At5g40300 gi|10178139|dbj|BAB11584.1| unnamed protein product [Arabidopsis thaliana] gi|38454164|gb|AAR20776.1| At5g40300 [Arabidopsis thaliana] gi|45592924|gb|AAS68116.1| At5g40300 [Arabidopsis thaliana] gi|332007148|gb|AED94531.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 8   LLYLGEKLKLLFDVADIDLSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVA 67
            L  G    L + +A    S+SI +      DDWQSNWG D+FPD+A+ASVALS+++FVA
Sbjct: 199 FLEFGLDQMLAYLLASASTSASIRV------DDWQSNWGADKFPDLARASVALSYVSFVA 252

Query: 68  LGFSSLISGYAL 79
             F SL SGYAL
Sbjct: 253 FAFCSLASGYAL 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2049500	283	AT2G36330 "AT2G36330" [Arabido	0.541	0.162	0.717	9.5e-14
TAIR|locus:2170603	270	AT5G40300 "AT5G40300" [Arabido	0.482	0.151	0.731	1.5e-12
TAIR|locus:2170703	297	AT5G62820 "AT5G62820" [Arabido	0.670	0.191	0.525	5.7e-10

TAIR|locus:2049500 AT2G36330 "AT2G36330" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 9.5e-14, P = 9.5e-14
 Identities = 33/46 (71%), Positives = 39/46 (84%)

Query:    39 DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
             DDW SNWG+DEF +MA AS+A+SFLAF+A  FSSLISGY L+NQ S
Sbjct:   237 DDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2170603 AT5G40300 "AT5G40300" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query:    39 DDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYAL 79
             DDWQSNWG D+FPD+A+ASVALS+++FVA  F SL SGYAL
Sbjct:   224 DDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGYAL 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2170703 AT5G62820 "AT5G62820" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 31/59 (52%), Positives = 38/59 (64%)

Query:    26 LSSSICIVFGCCPDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 84
             +S+S C       DDW SNWG+DEF  MA AS+A+SFLAF A   S+LIS Y L+   S
Sbjct:   240 MSASSCAATRV--DDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        69   0.00091  102 3  11 22  0.42    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  107 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.83u 0.14s 7.97t   Elapsed:  00:00:01
  Total cpu time:  7.83u 0.14s 7.97t   Elapsed:  00:00:01
  Start:  Fri May 10 13:48:24 2013   End:  Fri May 10 13:48:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84WP5	CSPL8_ARATH	No assigned EC number	0.7173	0.5411	0.1625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	99.29
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	98.96

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=99.29  E-value=4.5e-12  Score=90.03  Aligned_cols=65  Identities=26%  Similarity=0.175  Sum_probs=56.3

Q ss_pred             hhhhhhhcchh----hhhhhhccccccc---------hhhhh-hccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038085           15 LKLLFDVADID----LSSSICIVFGCCP---------DDWQS-NWGEDEFPDMAKASVALSFLAFVALGFSSLISGYAL   79 (85)
Q Consensus        15 ~~~~fDf~~DQ----LLmSAsSaA~~r~---------~~w~s-~~~~d~Ft~~a~aSIsmsFlAF~alAlSsLiSgy~L   79 (85)
                      .+.|++|.+||    |++|+.++|.+..         ..|+. |-.-|+||+++.+|++++|+||+++++++++|+|++
T Consensus        76 ~~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~  154 (154)
T TIGR01569        76 FKLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL  154 (154)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999    9999999998743         24553 445789999999999999999999999999999985

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=98.96  E-value=5.6e-10  Score=77.30  Aligned_cols=65  Identities=38%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             HHHHHHHh------hhhhhhhhhhhcchh----hhhhhhccccccchhhhh----------hccCCchhhHHHHHHHHHH
Q 038085            3 LQLLLLLY------LGEKLKLLFDVADID----LSSSICIVFGCCPDDWQS----------NWGEDEFPDMAKASVALSF   62 (85)
Q Consensus         3 ~~~~~~~~------~~ek~~~~fDf~~DQ----LLmSAsSaA~~r~~~w~s----------~~~~d~Ft~~a~aSIsmsF   62 (85)
                      +|+....+      .++|...|++|.+||    |++|+.++|++..+.+.+          |..-++||+++.+|++++|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf  144 (149)
T PF04535_consen   65 LQLVLSIYSLSRGKLRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSF  144 (149)
T ss_pred             HHHHHHHHHHHccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHH
Confidence            45555544      678999999999999    999999999998887764          4678999999999999999


Q ss_pred             HHHHH
Q 038085           63 LAFVA   67 (85)
Q Consensus        63 lAF~a   67 (85)
                      +||++
T Consensus       145 ~a~~~  149 (149)
T PF04535_consen  145 LAFVA  149 (149)
T ss_pred             HHHHC
Confidence            99974

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00