Citrus Sinensis ID: 038087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGKQMRLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDGNGGNGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccEEEEEEEcccccEEEEcccccccccccccEEEcccccEEEEEEcccccccccccccccccEEcccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcEEEEEEEcccccEEEEEEEccHEEEEEEcEEccEcccEEEEEEEccccccccEEEccccEEEEEcccccEEEEccEEEEcccccccccccccccccccccccccccEccccccccccccccccccHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcc
Coil and Loop (DISEMBL)
magcvsgfgglshvVNVGNEVVLGKIWSQSSVFCKVRFKKFVKevylphvsvkgkQMRLVAMSSNMSESSAELQSGVAssverkegnvggvgkdvKVLENdyeiktgsdgnggngrfnngggggggggggsgggngddseqndyeerefgpimkFEEVMKEVEArgaslpsdMFEAAKSVGIRKLLLLRYFDlqgsswplgFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Flexible Loop (DISEMBL)
MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVkevylphvsvkgkqMRLVAMSSNMSESSAELQSGVassverkegnvggvgkdvkvlENDYEiktgsdgnggnGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARgaslpsdmFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Low Complexity Region (SEG)
MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSvfckvrfkkfvkevYLPHVSVKGKQMRLVamssnmsessaeLQSGVASSVERkegnvggvgkdvkvLENDYEIKTgsdgnggngrfnngggggggggggsgggngddsEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Disordered region (IsUnstruct)
***CVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGK**********************************************************************************************************************FEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFW****
Disordered Region (DISOPRED)
***********SHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPH**************************************************************************************************EFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGK*F***FE
Disordered Region (DISEMBL)
MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGKQMRLVAM***********************GNVGGVGKDVKVLENDYEIKTGSDGNGGNGRFNNGGGGGG******************YEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Disordered Region (DISPRO)
********GGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGKQMRLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIK************************************NDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFW**FE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGKQMRLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDGNGGNGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
225440504	443	PREDICTED: uncharacterized protein LOC10	0.984	0.559	0.585	1e-62
297823657	431	hypothetical protein ARALYDRAFT_482793 [	0.964	0.563	0.558	1e-55
227204439	432	AT2G37860 [Arabidopsis thaliana]	0.956	0.557	0.552	8e-53
30687283	347	uncharacterized protein [Arabidopsis tha	0.956	0.694	0.548	2e-52
79324637	432	uncharacterized protein [Arabidopsis tha	0.956	0.557	0.548	2e-52
449440303	439	PREDICTED: uncharacterized protein LOC10	0.960	0.551	0.537	3e-51
356566573	443	PREDICTED: uncharacterized protein LOC10	0.980	0.557	0.496	2e-50
356523205	443	PREDICTED: uncharacterized protein LOC10	0.944	0.537	0.501	1e-48
15242979	433	protein reticulata-related 1 [Arabidopsi	0.428	0.249	0.824	1e-47
255577977	420	conserved hypothetical protein [Ricinus	0.920	0.552	0.550	2e-46

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/263 (58%), Positives = 173/263 (65%), Gaps = 15/263 (5%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLP---------HVS 51
           MA C S  G LS  +++ NEVV G IWS + +    R   FVKEV LP         H+ 
Sbjct: 1   MAACSSSIG-LSRSLSLRNEVVSGMIWSHNLIIDNARLGYFVKEVALPLLCRNSGSRHLY 59

Query: 52  VKGKQMRLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDGN 111
            K KQ R  AMS  M E  AELQSGVA +   K+     V  D +VLE    +KT S+  
Sbjct: 60  RKKKQRR-GAMS--MLEPQAELQSGVAETPVSKDVTDTSVRNDARVLETGCALKTDSEDG 116

Query: 112 GGN--GRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASL 169
           G +        G    G GGG GGG  D  + +D EE EFGPI+ FEEVM+E +ARGASL
Sbjct: 117 GEDMLDGNGGNGNFPNGRGGGGGGGGDDKDDGDDLEEEEFGPILSFEEVMREAQARGASL 176

Query: 170 PSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIV 229
           PSDM  AAKSVGIRK+LLLRY DLQGS WPLGF MKS +MLRNRMLADPSFLFKIGTEIV
Sbjct: 177 PSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAMKSCSMLRNRMLADPSFLFKIGTEIV 236

Query: 230 IDSCCATLAEVQKRGKDFWAEFE 252
           IDSCCAT AEVQKRGKDFWAEFE
Sbjct: 237 IDSCCATFAEVQKRGKDFWAEFE 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823657|ref|XP_002879711.1| hypothetical protein ARALYDRAFT_482793 [Arabidopsis lyrata subsp. lyrata] gi|297325550|gb|EFH55970.1| hypothetical protein ARALYDRAFT_482793 [Arabidopsis lyrata subsp. lyrata]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 172/256 (67%), Gaps = 13/256 (5%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKGK--QMR 58
           MAGC   F   S VV V NE+   +I ++  VF     +   K + +P + ++G   + R
Sbjct: 1   MAGCAMNFQ-FSSVVKVRNEISSLRICNRDFVF-----RDLAKAMKVPVLRIRGASGRQR 54

Query: 59  LVAMSSNMSESSAELQSGVASSVERK-EGNVGGVGKD-VKVLENDYEIKTGSDGNGGNGR 116
              +  NMS+S  E QSGV+ + + K EG+   +GKD V+ L  D       DGN G+  
Sbjct: 55  SRLLMVNMSQSPVEPQSGVSVTEQSKGEGDDSILGKDNVRNLGTDQLENLDHDGNVGD-- 112

Query: 117 FNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEA 176
               G  G GGGGG G G   D E  DYEE+EFGPI+KFEEVMKE EARGA+LPSDM EA
Sbjct: 113 -GFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEA 171

Query: 177 AKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCAT 236
           AK+ GIRK+LLLRY DLQ S+  LGF ++SWAMLRNRMLADPSFLFKIG EIVIDSCCAT
Sbjct: 172 AKTYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCAT 231

Query: 237 LAEVQKRGKDFWAEFE 252
           +AEVQKRGKDFWAEFE
Sbjct: 232 VAEVQKRGKDFWAEFE 247

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227204439|dbj|BAH57071.1| AT2G37860 [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 143/259 (55%), Positives = 172/259 (66%), Gaps = 18/259 (6%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKG----KQ 56
           MAGC       S VV V NE+    I ++  VF     +   K + +P + ++G    ++
Sbjct: 1   MAGCAMNLQ-FSSVVKVRNEISSFGICNRDFVF-----RDLAKAMKVPVLRIRGGSGRQR 54

Query: 57  MRLVAMSSNMSESSAELQSGVASSVE--RKEGNVGGVGKD-VKVLENDYEIKTGSDGNGG 113
            RL  +  NMS+S  E QSG  ++ E  + EG+   +GKD V+ L  D       DGN G
Sbjct: 55  SRLFVV--NMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVG 112

Query: 114 NGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDM 173
           +G     G  G GGGGG G G   D E  DYEE+EFGPI+KFEEVMKE EARGA+LPSDM
Sbjct: 113 DGF---NGSDGNGGGGGGGNGGEGDGESEDYEEKEFGPILKFEEVMKETEARGATLPSDM 169

Query: 174 FEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSC 233
            EAAK+ GIRK+LLLRY DLQ S+  LGF ++SWAMLRNRMLADPSFLFKIG EIVIDSC
Sbjct: 170 LEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSC 229

Query: 234 CATLAEVQKRGKDFWAEFE 252
           CAT+AEVQKRGKDFWAEFE
Sbjct: 230 CATVAEVQKRGKDFWAEFE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687283|ref|NP_850287.1| uncharacterized protein [Arabidopsis thaliana] gi|79594760|ref|NP_850288.2| uncharacterized protein [Arabidopsis thaliana] gi|19698997|gb|AAL91234.1| unknown protein [Arabidopsis thaliana] gi|25084059|gb|AAN72164.1| unknown protein [Arabidopsis thaliana] gi|330254363|gb|AEC09457.1| uncharacterized protein [Arabidopsis thaliana] gi|330254364|gb|AEC09458.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 171/259 (66%), Gaps = 18/259 (6%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKG----KQ 56
           MAGC       S VV V NE+    I ++  VF     +   K + +P + ++G    ++
Sbjct: 1   MAGCAMNLQ-FSSVVKVRNEISSFGICNRDFVF-----RDLAKAMKVPVLRIRGGSGRQR 54

Query: 57  MRLVAMSSNMSESSAELQSGVASSVE--RKEGNVGGVGKD-VKVLENDYEIKTGSDGNGG 113
            RL  +  NMS+S  E QSG  ++ E  + EG+   +GKD V+ L  D       DGN G
Sbjct: 55  SRLFVV--NMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVG 112

Query: 114 NGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDM 173
           +      G  G GGGGG G G   D E  DYEE+EFGPI+KFEEVMKE EARGA+LPSDM
Sbjct: 113 D---GFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDM 169

Query: 174 FEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSC 233
            EAAK+ GIRK+LLLRY DLQ S+  LGF ++SWAMLRNRMLADPSFLFKIG EIVIDSC
Sbjct: 170 LEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSC 229

Query: 234 CATLAEVQKRGKDFWAEFE 252
           CAT+AEVQKRGKDFWAEFE
Sbjct: 230 CATVAEVQKRGKDFWAEFE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324637|ref|NP_001031506.1| uncharacterized protein [Arabidopsis thaliana] gi|222423084|dbj|BAH19522.1| AT2G37860 [Arabidopsis thaliana] gi|330254365|gb|AEC09459.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 171/259 (66%), Gaps = 18/259 (6%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHVSVKG----KQ 56
           MAGC       S VV V NE+    I ++  VF     +   K + +P + ++G    ++
Sbjct: 1   MAGCAMNLQ-FSSVVKVRNEISSFGICNRDFVF-----RDLAKAMKVPVLRIRGGSGRQR 54

Query: 57  MRLVAMSSNMSESSAELQSGVASSVE--RKEGNVGGVGKD-VKVLENDYEIKTGSDGNGG 113
            RL  +  NMS+S  E QSG  ++ E  + EG+   +GKD V+ L  D       DGN G
Sbjct: 55  SRLFVV--NMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVG 112

Query: 114 NGRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDM 173
           +      G  G GGGGG G G   D E  DYEE+EFGPI+KFEEVMKE EARGA+LPSDM
Sbjct: 113 D---GFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDM 169

Query: 174 FEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSC 233
            EAAK+ GIRK+LLLRY DLQ S+  LGF ++SWAMLRNRMLADPSFLFKIG EIVIDSC
Sbjct: 170 LEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSC 229

Query: 234 CATLAEVQKRGKDFWAEFE 252
           CAT+AEVQKRGKDFWAEFE
Sbjct: 230 CATVAEVQKRGKDFWAEFE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/255 (53%), Positives = 162/255 (63%), Gaps = 13/255 (5%)

Query: 8   FGGLSHVVNVGNEVVLGK-IWSQSSVFCKVRFKKFVKEVYLP---------HVSVKGKQM 57
           FG L + V  GNEVVLGK +WSQ   F    F+  VKEV  P          + VK K  
Sbjct: 4   FGTL-YSVEFGNEVVLGKMVWSQGVAFGCRSFRSVVKEVAYPISDRKGIGRCIGVKRKNK 62

Query: 58  RLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDGNGGNGRF 117
             V MS   S+S     +  A+    KE +    G+D + +E    +    D    +G  
Sbjct: 63  FSVVMS--FSQSHLNSDAPAAAVTVSKEEDDAIRGRDFRSMEMSEVVSDKHDAELIDGNG 120

Query: 118 NNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAA 177
            NG    GGGGGG  GG+G D  + D EE EFGPIMKFEEVMKE+E+RG +LPSDM EAA
Sbjct: 121 GNGAYNNGGGGGGGRGGDGGDDSRGDREEEEFGPIMKFEEVMKELESRGVTLPSDMLEAA 180

Query: 178 KSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATL 237
           KS GIRKLLLLRY ++QG  WPLGFLM+S AM+RNR+LADPSF FK+G E+VIDSCCAT 
Sbjct: 181 KSEGIRKLLLLRYLEMQGLGWPLGFLMRSCAMIRNRVLADPSFFFKVGVELVIDSCCATF 240

Query: 238 AEVQKRGKDFWAEFE 252
           AEVQKRGKDFW EFE
Sbjct: 241 AEVQKRGKDFWTEFE 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 167/264 (63%), Gaps = 17/264 (6%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYL----------PHV 50
           MAGC S F  ++   NV  E+VLG   +Q +   ++ F+  + E               V
Sbjct: 1   MAGCSSNFA-VAGCANVRKEIVLG---NQKTNLIRLSFRGVLNEATFQVLRGSKCSRSCV 56

Query: 51  SVKGKQMRLVAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDG 110
            ++ K M  V MS +   + AEL+S V+S    + G    + KD +  +++ + K   D 
Sbjct: 57  PIQKKAMFFV-MSMSQPSAEAELESAVSSIGLSEGGGDSVLRKDQETRDSESDSKIDRDD 115

Query: 111 NGGN--GRFNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGAS 168
           + G         G  G GG G   GG G + + ND EE EFGPI+K++EVM+E EARGA+
Sbjct: 116 DNGVVLDGSGGNGSFGSGGAGDGSGGGGSNDDGNDNEEEEFGPILKYDEVMRETEARGAT 175

Query: 169 LPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEI 228
           LP DM EAAKSVGIRK+LLLRY DLQGS WPLGF MKS +MLRNRMLADP+FLFKIG+EI
Sbjct: 176 LPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFMKSCSMLRNRMLADPAFLFKIGSEI 235

Query: 229 VIDSCCATLAEVQKRGKDFWAEFE 252
           VID+CCAT AE+QKRGKDFWAEFE
Sbjct: 236 VIDTCCATFAEIQKRGKDFWAEFE 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/273 (50%), Positives = 171/273 (62%), Gaps = 35/273 (12%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYL----------PHV 50
           MAGC S F  ++   NV  EVVLG   ++ +   ++ F+  + E               V
Sbjct: 1   MAGCSSNFA-VARFANVRKEVVLG---NEETNLIRLSFRGVLNESAFQVLRGSKCGRSCV 56

Query: 51  SVKGKQMRLVAMSSNMSESSAELQSGVA-SSVERKEGNVGGVGKDVKVLENDYEIKTGSD 109
            ++ K M L+    +MS+ SAE +S  A +S+   EG     G D  VL ND   +  S+
Sbjct: 57  PMQEKAMFLIM---SMSQPSAENESQSAVTSIGLSEG-----GGD-NVLSNDDGTRD-SE 106

Query: 110 GNGGNGRFNNGG----------GGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVM 159
            +  N R ++ G            G GG G   GG G D + ND EE EFGPI+K++EVM
Sbjct: 107 PDSKNERNDDNGVVLDGSGGNGNFGSGGAGDGSGGGGGDDDGNDNEEEEFGPILKYDEVM 166

Query: 160 KEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS 219
           +E EARGA+LP DM EAAKSVGIRK+LLLRY DLQGS WPLGF MKS +MLRNRMLADP+
Sbjct: 167 RETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFMKSCSMLRNRMLADPA 226

Query: 220 FLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE 252
           FLFKIG+EIVID+CCAT AE+QKRGKDFWAEFE
Sbjct: 227 FLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFE 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 97/108 (89%)

Query: 145 EEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLM 204
           EE+EFGPI+KFEEVMKE E RG +LP DM EAAKSVGIRKL LLRY DLQGS WPLGFLM
Sbjct: 141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query: 205 KSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE 252
           +S AMLRNRMLADPSFLFK+GTE+ IDSCCAT AEVQKRG+DFW+EFE
Sbjct: 201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577977|ref|XP_002529860.1| conserved hypothetical protein [Ricinus communis] gi|223530636|gb|EEF32510.1| conserved hypothetical protein [Ricinus communis]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/256 (55%), Positives = 166/256 (64%), Gaps = 24/256 (9%)

Query: 1   MAGCVSGFGGLSHVVNVGNEVVLGKIWSQSSV-FCKVRFKKFVKEVYLPHVSVKGKQMRL 59
           MAG  S F  L +   + N      I S +SV F +V F          HV    KQ RL
Sbjct: 1   MAGSASSFMKLQYDAVLLNRSSSIMIPSYNSVGFKQVTF----------HVPSVKKQGRL 50

Query: 60  VAMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKT---GSDGNGGNGR 116
           + +  +    S  L +   ++V   E +   V KDVK+LEN  E+ T   G  G GGNG+
Sbjct: 51  IRIRCSHEPESGALTT---TTVVTNESDESVVVKDVKILENRNELDTDIVGDCGTGGNGK 107

Query: 117 FNNGGGGGGGGGGGSGGGNGDDSEQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEA 176
           F +GGGG       +GGG   +SE  D EE+EFGPI+K+EEVMKEVE RGASLP+DM +A
Sbjct: 108 FPSGGGG-------NGGGGDGESEGEDIEEKEFGPILKYEEVMKEVERRGASLPADMLDA 160

Query: 177 AKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCAT 236
           AK  GIRKLLLLRY DLQGS   LGFLMKS +MLRNRMLADPSFLFKIGTEIVIDSCCAT
Sbjct: 161 AKGPGIRKLLLLRYLDLQGSGGILGFLMKSCSMLRNRMLADPSFLFKIGTEIVIDSCCAT 220

Query: 237 LAEVQKRGKDFWAEFE 252
            AE+QKRG+DFWAEFE
Sbjct: 221 FAEIQKRGEDFWAEFE 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.448	0.261	0.823	1.8e-46
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.448	0.260	0.796	1.3e-45

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 93/113 (82%), Positives = 102/113 (90%)

Query:   140 EQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWP 199
             E  DYEE+EFGPI+KFEEVMKE EARGA+LPSDM EAAK+ GIRK+LLLRY DLQ S+  
Sbjct:   136 EGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGL 195

Query:   200 LGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE 252
             LGF ++SWAMLRNRMLADPSFLFKIG EIVIDSCCAT+AEVQKRGKDFWAEFE
Sbjct:   196 LGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFE 248

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 90/113 (79%), Positives = 99/113 (87%)

Query:   140 EQNDYEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWP 199
             E +  EE+EFGPI+KFEEVMKE E RG +LP DM EAAKSVGIRKL LLRY DLQGS WP
Sbjct:   136 EADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWP 195

Query:   200 LGFLMKSWAMLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE 252
             LGFLM+S AMLRNRMLADPSFLFK+GTE+ IDSCCAT AEVQKRG+DFW+EFE
Sbjct:   196 LGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFE 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      252       179   0.00089  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  160 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.93u 0.19s 12.12t   Elapsed:  00:00:00
  Total cpu time:  11.93u 0.19s 12.12t   Elapsed:  00:00:00
  Start:  Mon May 20 16:09:00 2013   End:  Mon May 20 16:09:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	2e-17
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	8e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
PHA00370	297	PHA00370, III, attachment protein	0.002

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 212 NRMLADPSFLFKIGTEIVIDSCCATLAEVQKRGKDFWAEFE 252
            R+LADPSFLFK+  E VID C AT+AEV+KRG++FWAEF+
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFD 41

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 61  AMSSNMSESSAELQSGVASSVERKEGNVGGVGKDVKVLENDYEIKTGSDGNGGNGRFNNG 120
           A +S  S +++   S VA+                              G GG G F   
Sbjct: 47  ASASASSSATSSSASLVAN--GAVALLSASAI--------------SGGGGGGGGGFGGF 90

Query: 121 GGGGGGGGGGSGGG 134
           GGGGGGGGGG GG 
Sbjct: 91  GGGGGGGGGGGGGW 104

Length = 796

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 16/28 (57%), Positives = 16/28 (57%)

Query: 107 GSDGNGGNGRFNNGGGGGGGGGGGSGGG 134
           G  G G  G    G GGGGGG GG GGG
Sbjct: 25  GGRGGGRGGGRGRGRGGGGGGRGGGGGG 52

Length = 293

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/31 (61%), Positives = 19/31 (61%)

Query: 107 GSDGNGGNGRFNNGGGGGGGGGGGSGGGNGD 137
           GSD  G  G  N GGG GGG  GGSGGG  D
Sbjct: 93  GSDTGGDTGGGNTGGGSGGGDTGGSGGGGSD 123

Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
COG1512	271	Beta-propeller domains of methanol dehydrogenase t	87.93

>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

Probab=87.93  E-value=0.54  Score=43.69  Aligned_cols=11  Identities=36%  Similarity=0.779  Sum_probs=4.8

Q ss_pred             CCCCCCCCCCC
Q 038087          109 DGNGGNGRFNN  119 (252)
Q Consensus       109 ~g~gg~g~~~~  119 (252)
                      +|+|++|+++.
T Consensus       238 ~g~g~~g~~gg  248 (271)
T COG1512         238 SGSGGSGGSGG  248 (271)
T ss_pred             CCCCCCCCCCC
Confidence            44444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	95.11

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=95.11  E-value=0.0037  Score=56.84  Aligned_cols=8  Identities=38%  Similarity=0.584  Sum_probs=0.0

Q ss_pred             CCCCCCCC
Q 038087          110 GNGGNGRF  117 (252)
Q Consensus       110 g~gg~g~~  117 (252)
                      +.||+|++
T Consensus       280 ~~~~~~~~  287 (358)
T 2pk2_A          280 EQGGTGGG  287 (358)
T ss_dssp             --------
T ss_pred             ccCCCCCC
Confidence            45565544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00