Citrus Sinensis ID: 038090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP
Secondary Structure (PSIPRED)
ccccEEEccccccEEccHHHHHccccccEEEcccccccccccccccHHHcccccccccEEcccccccccccHHHHccccccccccccccccccEEEccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccHHHccccccEEEEcccccccccccHHHcccHccccEEEEEcccccccccccHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccHccccccc
Coil and Loop (DISEMBL)
hsqrkineqdfgvetsNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIdvdtssavsptltnlSSLIYLSIsecssqdlfgylpksqkgslleDLRLSFTKFlgkippslgnltnledrylsdngfsgelptslgklnslktfdisscnilgkiptsllirlppsvalsstp
Flexible Loop (DISEMBL)
hsqrkineqdfgvetsnISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFlgkippslgnltNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIlgkiptsllirlppsvalsstp
Low Complexity Region (SEG)
HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP
Disordered region (IsUnstruct)
***************SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL**********
Disordered Region (DISOPRED)
HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP
Disordered Region (DISEMBL)
HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP
Disordered Region (DISPRO)
*SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9SGP2	996	Receptor-like protein kin	no	no	0.569	0.106	0.405	9e-12
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.741	0.134	0.327	1e-10
C0LGV1	1135	LRR receptor-like serine/	no	no	0.526	0.086	0.429	4e-10
Q9C9H7	847	Receptor-like protein 12	no	no	0.521	0.114	0.386	7e-10
C0LGG9	1035	Probable LRR receptor-lik	no	no	0.806	0.144	0.319	9e-10
C0LGX3	993	LRR receptor-like serine/	no	no	0.548	0.102	0.377	1e-09
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.747	0.126	0.310	2e-09
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.779	0.116	0.305	4e-09
Q9SYQ8	980	Receptor protein kinase C	no	no	0.774	0.146	0.302	4e-09
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.822	0.146	0.339	5e-09

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 68  SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGN 126
           S + P   NL++L  + ++EC    L G +P S  + S L DL L+    +G IPPSLG 
Sbjct: 195 SRIPPEFGNLTNLEVMWLTECH---LVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGG 251

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           LTN+    L +N  +GE+P  LG L SL+  D S   + GKIP   L R+P
Sbjct: 252 LTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDE-LCRVP 301

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 33/171 (19%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
           L  LDLS N F         S+L K L+NL  + +IDV  +S        L     L+  
Sbjct: 103 LQALDLSNNAFE--------SSLPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHV 154

Query: 87  ECSSQDLFGYLPKSQ----------------KGSL---------LEDLRLSFTKFLGKIP 121
             SS +  G+LP+                  +GS+         L+ L LS   F GK+P
Sbjct: 155 NASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVP 214

Query: 122 PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
             +G L++LE   L  NGF GE+P   GKL  L+  D++  N+ G+IP+SL
Sbjct: 215 KVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSL 265

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 76  NLSSLIYLSISEC--------SSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGN 126
           NLS  + L IS C        S+  L GYLP S    + L+ L +S     GKIP SLG+
Sbjct: 502 NLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGH 561

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
           L +L    LS N F+GE+P+SLG   +L+  D+SS NI G IP  L 
Sbjct: 562 LISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELF 608

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 73  TLTNLSSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLE 131
           +L  L  L +L ++ C   +L+G +P S    S L  + L F KF+G+IP S+GNL  L 
Sbjct: 105 SLFKLQYLRHLDLTNC---NLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLR 161

Query: 132 DRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
              L++N  +GE+P+SLG L+ L   ++ S  ++GKIP S+
Sbjct: 162 HLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSI 202

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 14  ETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNL-------AKKLTNLIEIYLIDVDT 66
           +T NI R +       LD  +N  A    K   SN+       A  +  +  I L   + 
Sbjct: 47  QTVNIERTS------CLDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTNIQLRGFNL 100

Query: 67  SSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGN 126
              + P   NL+ L  + +       L G +P +     LE L ++  +  G  PP LG 
Sbjct: 101 RGIIPPEFGNLTRLTEIDLV---LNFLSGTIPTTLSQIPLEILAVTGNRLSGPFPPQLGQ 157

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           +T L D  +  N F+G+LP +LG L SLK   ISS NI G+IP SL
Sbjct: 158 ITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESL 203

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 68  SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGN 126
           S +  TL NLS+L  L ++     +L G +P S     LLE+L L+     G+IP S+G 
Sbjct: 210 SPIPSTLGNLSNLTDLRLTH---SNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGR 266

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           L ++    L DN  SG+LP S+G L  L+ FD+S  N+ G++P  +
Sbjct: 267 LESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKI 312

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 9/148 (6%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
           L VLD+S NH + ++     S L    +N+I + L   + S  +   +T   +L+ L ++
Sbjct: 411 LWVLDMSDNHLSGRIP----SYLCLH-SNMIILNLGTNNLSGNIPTGITTCKTLVQLRLA 465

Query: 87  ECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
                +L G  P +  K   +  + L   +F G IP  +GN + L+   L+DNGF+GELP
Sbjct: 466 R---NNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELP 522

Query: 146 TSLGKLNSLKTFDISSCNILGKIPTSLL 173
             +G L+ L T +ISS  + G++P+ + 
Sbjct: 523 REIGMLSQLGTLNISSNKLTGEVPSEIF 550

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 9/154 (5%)

Query: 20  RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS 79
            +++   L  LDLS N  A  + ++       +L  L ++YL +      +SP+++NL++
Sbjct: 355 ELSKCQSLKQLDLSNNSLAGSIPEALF-----ELVELTDLYLHNNTLEGTLSPSISNLTN 409

Query: 80  LIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
           L +L +      +L G LPK       LE L L   +F G+IP  +GN T+L+   +  N
Sbjct: 410 LQWLVLYH---NNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGN 466

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            F GE+P S+G+L  L    +    ++G +P SL
Sbjct: 467 HFEGEIPPSIGRLKELNLLHLRQNELVGGLPASL 500

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 8/152 (5%)

Query: 21  VARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80
           + R  +L +L LS N F   + +        K  +L +I ++    +  V   L NL   
Sbjct: 381 LCRGEKLEMLILSNNFFFGPIPEE-----LGKCKSLTKIRIVKNLLNGTVPAGLFNLP-- 433

Query: 81  IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
             ++I E +     G LP +  G +L+ + LS   F G+IPP++GN  NL+  +L  N F
Sbjct: 434 -LVTIIELTDNFFSGELPVTMSGDVLDQIYLSNNWFSGEIPPAIGNFPNLQTLFLDRNRF 492

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            G +P  + +L  L   + S+ NI G IP S+
Sbjct: 493 RGNIPREIFELKHLSRINTSANNITGGIPDSI 524

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           SNI+R+++      L L+ N  + K+  SG+    + LTNL  + L     SS + PTL 
Sbjct: 523 SNINRISK------LQLNGNRLSGKI-PSGI----RLLTNLEYLDLSSNRFSSEIPPTLN 571

Query: 76  NLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134
           NL  L Y+++S     DL   +P+   K S L+ L LS+ +  G+I     +L NLE   
Sbjct: 572 NLPRLYYMNLSR---NDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLD 628

Query: 135 LSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL 182
           LS N  SG++P S   + +L   D+S  N+ G IP +   R  P  A 
Sbjct: 629 LSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAF 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
224140521	888	predicted protein [Populus trichocarpa]	0.763	0.159	0.391	2e-15
224140509	961	predicted protein [Populus trichocarpa]	0.763	0.147	0.391	5e-15
147766212	925	hypothetical protein VITISV_018438 [Viti	0.806	0.162	0.337	2e-14
359485822	993	PREDICTED: receptor-like protein 12-like	0.881	0.165	0.406	2e-14
15228515	711	receptor like protein 43 [Arabidopsis th	0.795	0.208	0.350	4e-14
224140517	979	predicted protein [Populus trichocarpa]	0.763	0.145	0.379	1e-13
224140515	328	predicted protein [Populus trichocarpa]	0.763	0.432	0.379	2e-13
359490156	886	PREDICTED: receptor-like protein 12-like	0.784	0.164	0.366	2e-13
359493539	1001	PREDICTED: receptor-like protein 12-like	0.763	0.141	0.357	4e-13
18414102	891	receptor like protein 50 [Arabidopsis th	0.784	0.163	0.416	1e-12

>gi|224140521|ref|XP_002323631.1| predicted protein [Populus trichocarpa] gi|222868261|gb|EEF05392.1| predicted protein [Populus trichocarpa]

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 24/166 (14%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           LDL  N  + KLQK GL +L + LTNL  ++L  V+ S+ V   + NLSSL  L + +C 
Sbjct: 110 LDLGLN--SLKLQKPGLQHLVEALTNLEVLHLTKVNISAKVPQIMANLSSLSSLFLRDCG 167

Query: 90  SQDLF----------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
            Q  F                      GYLP+ Q GS LE L L+ TKF G +P SLGNL
Sbjct: 168 LQGEFPMGIFQLPNLRFLSIRYNPYLTGYLPEFQSGSKLETLMLTGTKFSGHLPESLGNL 227

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
            +L++ +++   FSG +P+SLG L  L   D+S  +  GKIP++ +
Sbjct: 228 KSLKEFHVAKCYFSGVVPSSLGNLTKLNYLDLSDNSFSGKIPSTFV 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 24/166 (14%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           LDL  N  + KLQK GL +L + LTNL  ++L +V+ S+ V   +TNLSSL  L + +C 
Sbjct: 141 LDLGLN--SLKLQKPGLQHLVEALTNLEVLHLSEVNISAKVPQVMTNLSSLSSLFLRDCG 198

Query: 90  SQDLF----------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
            Q  F                      GYLP+ Q G+ LE L L+ T F G++P SLGNL
Sbjct: 199 LQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPEFQLGNQLEKLLLARTSFSGQLPGSLGNL 258

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
            ++++  ++   FSG +P+SLG L  L   D+SS    GKIP S++
Sbjct: 259 KSMKEFDVAGCYFSGVIPSSLGNLTKLNYLDLSSNVFFGKIPRSVV 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 22/172 (12%)

Query: 23  RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82
           R L L     +Y+   F LQK  L NL +   +L +++L +V+ SS +   L NLSSL  
Sbjct: 123 RRLDLSXNXFNYSEIPFXLQKPXLRNLVQNXAHLKKLHLSEVNISSTIPHELANLSSLTT 182

Query: 83  LSISECS----------------------SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI 120
           L + EC                       + DL GYLP+ Q+ S L++L L  T F G++
Sbjct: 183 LFLRECGLHGEFPMNIFQLPSLKILSVSYNPDLIGYLPEFQETSPLKELHLYGTSFSGEL 242

Query: 121 PPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           P S+G L +L +  +S   F+G +P++LG L  L + D+S+ +  G IP+S+
Sbjct: 243 PTSIGRLGSLTELDISSCNFTGLVPSTLGHLPQLSSLDLSNNSFSGLIPSSM 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 4   RKINEQDFGVETSNISRVARAL-QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLI 62
           R +N  D        S V  AL +L  LDLS N    +LQK GL NL + LT   +++L 
Sbjct: 146 RSLNLSDSQFSGQIPSEVLLALSKLVFLDLSGNPM-LQLQKHGLRNLVQNLTLFKKLHLS 204

Query: 63  DVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS--QKGSLLEDLRLSFTKFLGKI 120
            V+ SS +   L NLSSL  L + EC    L G  PK   Q  SL + L L +   L   
Sbjct: 205 QVNISSTIPHALANLSSLTSLRLRECG---LHGEFPKKILQLPSL-QFLSLRYNPNLNIY 260

Query: 121 PPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            P     + L+  YL+   +SGELP S+GKL+SL   DISSCN  G +P+SL
Sbjct: 261 FPEFQETSPLKVLYLAGTSYSGELPASMGKLSSLSELDISSCNFTGLVPSSL 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228515|ref|NP_189531.1| receptor like protein 43 [Arabidopsis thaliana] gi|238479928|ref|NP_001154652.1| receptor like protein 43 [Arabidopsis thaliana] gi|9294230|dbj|BAB02132.1| disease resistance protein-like [Arabidopsis thaliana] gi|332643980|gb|AEE77501.1| receptor like protein 43 [Arabidopsis thaliana] gi|332643981|gb|AEE77502.1| receptor like protein 43 [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 18  ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNL 77
           +S +     L  LDLS+NHF+ ++  S        + NL  +  +D+  +       +++
Sbjct: 138 MSSIENLSHLTYLDLSFNHFSGQVPSS--------IGNLSHLTFLDLYCNQFSGQVPSSI 189

Query: 78  SSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
            +L +L+  E S    FG  P S  G S L  L L    FLG+IP S+GNL+NL   YL 
Sbjct: 190 GNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLC 249

Query: 137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
            N FSG++P+ +G L+ L   D+SS N  G+IP  L 
Sbjct: 250 KNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLW 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 24/166 (14%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           LDL  N  + KLQK GL +L + LTNL  ++L  V+ S+ V   +TNLSSL  L + +C 
Sbjct: 172 LDLGVN--SLKLQKPGLQHLVEALTNLEVLHLTGVNISAKVPQIMTNLSSLSSLFLRDCG 229

Query: 90  SQDLF----------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
            Q  F                      GYL + Q GS LE L L+ T F GK+P S+GNL
Sbjct: 230 LQGEFPMGIFQLPNLRFLSIRNNPYLTGYLSEFQSGSQLEILYLAGTSFSGKLPVSIGNL 289

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
            ++++  ++   FSG +P+SLG L  L   D+S  +  GKIP++ +
Sbjct: 290 KSMKELDVAACYFSGVIPSSLGNLTKLDYLDLSHNSFYGKIPSTFV 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140515|ref|XP_002323628.1| predicted protein [Populus trichocarpa] gi|222868258|gb|EEF05389.1| predicted protein [Populus trichocarpa]

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 24/166 (14%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           LDL  N  + KLQK GL +L + LTNL  ++L  V+ S+ V   +TNLSSL  L + +C 
Sbjct: 21  LDLGVN--SLKLQKPGLQHLVEALTNLEVLHLSGVNISAKVPQIMTNLSSLSSLFLRDCG 78

Query: 90  SQDLF----------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
            Q  F                      GYL + Q GS LE L L+ T F GK+P S+GNL
Sbjct: 79  LQGEFPMGIFQLPNLRFLSIRNNPYLTGYLSEFQSGSQLEILYLAGTSFSGKLPVSIGNL 138

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
            ++++  ++   FSG +P+SLG L  L   D+S  +  GKIP++ +
Sbjct: 139 KSMKELDVAACYFSGVIPSSLGNLTKLDYLDLSHNSFYGKIPSTFV 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 23/169 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L  L+LS N    +LQK GL  L + LT+L E++L  V+ SS +   L NLSSL  L +
Sbjct: 149 KLVFLNLSANPM-LQLQKPGLRYLVQNLTHLKELHLRQVNISSTIPHELANLSSLRTLFL 207

Query: 86  SECS----------------------SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS 123
            EC                       + DL GYLP+ Q+ S L+ L LS T F G++P S
Sbjct: 208 RECGLHGEFPMNIFQLPSLQFLSVRYNPDLIGYLPEFQETSPLKLLYLSGTSFSGELPTS 267

Query: 124 LGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           +G L +L    +S   F+G +P+ LG L+ L   D+S+    G+IP+S+
Sbjct: 268 IGRLGSLTKLDISSCNFTGLVPSPLGHLSQLSYLDLSNNFFSGQIPSSM 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 23/165 (13%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           LDLS N+ A +    G ++L + LT L +++L  +  SS    +L N SSLI + +S C 
Sbjct: 169 LDLSENYGA-EFAPHGFNSLVQNLTKLQKLHLRGISISSVFPNSLLNRSSLISIDLSGCG 227

Query: 90  ----------------------SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
                                 + DL G  P+  + + L +L LSFT   G++P S+GNL
Sbjct: 228 LHGRFPDHDIHLPKLEVLDLWRNDDLSGNFPRFSENNSLMELDLSFTNLSGELPASIGNL 287

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            +L+   LS   FSG + TS+G L SL+T D+S C   G IPTS+
Sbjct: 288 KSLQTLDLSGCEFSGFIHTSIGNLKSLQTLDLSGCEFSGFIPTSI 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414102|ref|NP_567412.1| receptor like protein 50 [Arabidopsis thaliana] gi|16604663|gb|AAL24124.1| putative disease resistance Cf-2 [Arabidopsis thaliana] gi|20259297|gb|AAM14384.1| putative disease resistance Cf-2 protein [Arabidopsis thaliana] gi|332657943|gb|AEE83343.1| receptor like protein 50 [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 19  SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS 78
           S + R   L  LDLSYN  +  L  S  +    ++ NL+   L        +  +L +LS
Sbjct: 99  SSLFRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGCNLF-----GEIPTSLRSLS 153

Query: 79  SLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
            L  L +S   + DL G +  S  G+L  L  L L+  KF GKIP SLGNLT L D  LS
Sbjct: 154 YLTDLDLSY--NDDLTGEILDSM-GNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLS 210

Query: 137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            N F+GELP S+G L SL+  ++  CN  GKIPTSL
Sbjct: 211 WNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSL 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.774	0.202	0.398	1e-17
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.790	0.164	0.431	1e-16
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.811	0.157	0.396	1.5e-16
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.795	0.165	0.356	5.4e-15
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.774	0.146	0.393	6.2e-15
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.784	0.154	0.388	1.2e-14
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.822	0.174	0.367	3.4e-13
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.758	0.141	0.376	1.1e-12
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.827	0.150	0.341	2.4e-12
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.666	0.109	0.36	2.7e-12

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 61/153 (39%), Positives = 84/153 (54%)

Query:    18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNL 77
             +S +     L  LDLS+NHF+ ++  S + NL+  LT  +++Y      S  V  ++ NL
Sbjct:   138 MSSIENLSHLTYLDLSFNHFSGQVPSS-IGNLSH-LT-FLDLYCNQF--SGQVPSSIGNL 192

Query:    78 SSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
             S L  L   E S    FG  P S  G S L  L L    FLG+IP S+GNL+NL   YL 
Sbjct:   193 SHLTTL---ELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLC 249

Query:   137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
              N FSG++P+ +G L+ L   D+SS N  G+IP
Sbjct:   250 KNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIP 282

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 69/160 (43%), Positives = 88/160 (55%)

Query:    16 SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLI-DVDTSSAVSPTL 74
             SN S + R   L  LDLSYN  +  L  S  +    ++ NL+   L  ++ TS      L
Sbjct:    97 SN-SSLFRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGCNLFGEIPTS------L 149

Query:    75 TNLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLED 132
              +LS L  L +S   + DL G +  S  G+L  L  L L+  KF GKIP SLGNLT L D
Sbjct:   150 RSLSYLTDLDLSY--NDDLTGEILDSM-GNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTD 206

Query:   133 RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
               LS N F+GELP S+G L SL+  ++  CN  GKIPTSL
Sbjct:   207 LDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSL 246

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 65/164 (39%), Positives = 91/164 (55%)

Query:    10 DF-GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS 68
             DF G  TS+I  ++    L  LDLS NHF+ ++  S + NL++ LT L    L D   S 
Sbjct:   132 DFKGQITSSIENLSH---LTYLDLSSNHFSGQILNS-IGNLSR-LTYL---NLFDNQFSG 183

Query:    69 AVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNL 127
                 ++ NLS L +L +S       FG  P S  G S L  L L   KF G+IP S+GNL
Sbjct:   184 QAPSSICNLSHLTFLDLSY---NRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNL 240

Query:   128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171
             +NL    LS+N FSG++P+ +G L+ L    + S N +G+IP+S
Sbjct:   241 SNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSS 284

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 56/157 (35%), Positives = 83/157 (52%)

Query:    18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNL 77
             ++ +    +L  LDLS+N F+ ++  S + NL+    +L  + L        +  ++ NL
Sbjct:    99 LNSIGNLSRLTSLDLSFNQFSGQIPSS-IGNLS----HLTFLGLSGNRFFGQIPSSIGNL 153

Query:    78 SSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
             S L +L +S       FG  P S  G S L +L LS+ K+ G+IP S+GNL+ L   YLS
Sbjct:   154 SHLTFLGLS---GNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLS 210

Query:   137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
              N F GE+P+S G LN L   D+S   + G  P  LL
Sbjct:   211 VNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLL 247

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 61/155 (39%), Positives = 85/155 (54%)

Query:    19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS 78
             S +     L  +D S+N+F+ ++     S+L   L++L    L   + S  V  ++ NLS
Sbjct:   154 SSIGNLSHLIFVDFSHNNFSGQIP----SSLGY-LSHLTSFNLSYNNFSGRVPSSIGNLS 208

Query:    79 SLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
                YL+    S    FG LP S  GSL  L DL L    F+GKIP SLGNL++L    L 
Sbjct:   209 ---YLTTLRLSRNSFFGELPSSL-GSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLH 264

Query:   137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171
              N F GE+P SLG L+ L +F +S  NI+G+IP+S
Sbjct:   265 KNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSS 299

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 61/157 (38%), Positives = 79/157 (50%)

Query:    19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS 78
             S +     L  L LSYN F   L  S + NL++ LT+L   +L     S  +  ++ NLS
Sbjct:   143 SSIGNLSHLTSLHLSYNQF-LGLIPSSIENLSR-LTSL---HLSSNQFSGQIPSSIGNLS 197

Query:    79 SLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
              L  L   E SS    G +P S  G+L  L  L L    F G+IP S+GNL  L   YLS
Sbjct:   198 HLTSL---ELSSNQFSGQIPSSI-GNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLS 253

Query:   137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
              N F GE+P+S G LN L    + S  + G +P SLL
Sbjct:   254 YNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLL 290

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 61/166 (36%), Positives = 87/166 (52%)

Query:    19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS 78
             S +     L  LDLS N+F+  +  S L NL   LT+L   +L D +    +  +L NLS
Sbjct:   129 SSIGNLSHLTTLDLSGNNFSGWIPSS-LGNLFH-LTSL---HLYDNNFGGEIPSSLGNLS 183

Query:    79 SLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLS 136
                YL+  + S+ +  G +P S  GSL  L  LRL   K  G +P  + NLT L +  LS
Sbjct:   184 ---YLTFLDLSTNNFVGEIPSSF-GSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLS 239

Query:   137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL 182
              N F+G LP ++  L+ L++F  S  N +G IP+SL     PS+ L
Sbjct:   240 HNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTI--PSITL 283

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 58/154 (37%), Positives = 80/154 (51%)

Query:    27 LGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
             L VL L YN     +    L N++  K+ NL   Y  +  + S + P   NL++L  + +
Sbjct:   158 LEVLSLVYNLLDGTIPPF-LGNISTLKMLNLS--Y--NPFSPSRIPPEFGNLTNLEVMWL 212

Query:    86 SECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143
             +EC    L G +P S  G L  L DL L+    +G IPPSLG LTN+    L +N  +GE
Sbjct:   213 TECH---LVGQIPDSL-GQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGE 268

Query:   144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             +P  LG L SL+  D S   + GKIP  L  R+P
Sbjct:   269 IPPELGNLKSLRLLDASMNQLTGKIPDELC-RVP 301

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 178 (67.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 57/167 (34%), Positives = 92/167 (55%)

Query:    21 VARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80
             +    +L +L L  N F+  +  + LSNL    TNL+ + L   + S  +   L N+ +L
Sbjct:   444 IGNLTELNILLLGTNKFSGWIPYT-LSNL----TNLLSLGLSTNNLSGPIPSELFNIQTL 498

Query:    81 -IYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSD 137
              I +++S+    +L G +P+ + G L  L +      +  GKIP +LG+   L   YL +
Sbjct:   499 SIMINVSK---NNLEGSIPQ-EIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQN 554

Query:   138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL-IRLPPSVALS 183
             N  SG +P++LG+L  L+T D+SS N+ G+IPTSL  I +  S+ LS
Sbjct:   555 NLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLS 601

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 45/125 (36%), Positives = 67/125 (53%)

Query:    49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG-SLLE 107
             + K +  L  +  +D+  ++   P    +S+   L +   S+  L GYLP S    + L+
Sbjct:   483 IPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQ 542

Query:   108 DLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGK 167
              L +S     GKIP SLG+L +L    LS N F+GE+P+SLG   +L+  D+SS NI G 
Sbjct:   543 VLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGT 602

Query:   168 IPTSL 172
             IP  L
Sbjct:   603 IPEEL 607

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
           L  LDL YN+    +  S L NL     NL  ++L     S  + P++ +L  LI L +S
Sbjct: 238 LNHLDLVYNNLTGPIPSS-LGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 87  ECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
           + S   L G +P+   +   LE L L    F GKIP +L +L  L+   L  N FSGE+P
Sbjct: 293 DNS---LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 146 TSLGKLNSLKTFDISSCNILGKIPTSL 172
            +LGK N+L   D+S+ N+ G+IP  L
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 40  KLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP 98
           +LQ +  S  L  + T L  +Y +D+  ++      +    +  L +   +    FG LP
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 99  KSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFD 158
            S     LE+L LS  +F G +P  LG+L+ L    LS+N  SGE+P  L     L + D
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 159 ISSCNILGKIPTS 171
           +S   + G+IP S
Sbjct: 530 LSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 91  QDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLG 149
           Q L G++P    K   L+ + LS     G IPPSLG++T+LE   LS N F+G +P SLG
Sbjct: 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 150 KLNSLKTFDISSCNILGKIPTSLLIRL 176
           +L SL+  +++  ++ G++P +L  RL
Sbjct: 488 QLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 30  LDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECS 89
           L+LS N+F   + +  + NL            +D+  +        ++ S   L + +  
Sbjct: 123 LNLSNNNFTGSIPRGSIPNL----------ETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 90  SQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSL 148
              L G +P S    + LE L L+  + +G+IP  LG + +L+  YL  N  SGE+P  +
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 149 GKLNSLKTFDISSCNILGKIPTSL 172
           G L SL   D+   N+ G IP+SL
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSL 256

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 47/147 (31%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L +L L+ N F   L  S  S   + L       L     S AV   L +LS L+ L +
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGSKRLENLD------LSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 86  SECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
           SE     L G +P        L  L LS  +  G+IP S   +  L    LS N  SGE+
Sbjct: 507 SE---NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTS 171
           P +LG + SL   +IS  ++ G +P++
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 83  LSISECSSQDLFGYLPKSQKGS-LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
           L++ + S+ +L G +P+    S  L  L L      G+IP SLG   +L    L DN FS
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPT 170
           GELP+   KL  +   DIS+ N+ G+I +
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165
           L+ L L+  KF G +P S G+   LE+  LS N FSG +P  LG L+ L    +S   + 
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 166 GKIPTSL 172
           G+IP  L
Sbjct: 513 GEIPDEL 519

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 70  VSPTLTNLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLT 128
           +  +LTNL+SL +L+++   S  L G +P+   +   L+ + L +    G+IP  +G LT
Sbjct: 180 IPNSLTNLTSLEFLTLA---SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           +L    L  N  +G +P+SLG L +L+   +    + G IP S+
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 26/104 (25%)

Query: 46  LSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL 105
           + N   KL +L  I L        + P+L +++S                          
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-------------------------- 467

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLG 149
           LE L LS+  F G IP SLG LT+L    L+ N  SG +P +LG
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165
           L ++ L  +K L +IP  L   TNLE   LSD     ELP+S+  LN L+  D+S C  L
Sbjct: 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 166 GKIPT 170
             +PT
Sbjct: 695 EILPT 699

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
PLN03150	623	hypothetical protein; Provisional	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
PLN03150	623	hypothetical protein; Provisional	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.32
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.41
KOG4341	483	consensus F-box protein containing LRR [General fu	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.08
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.64
smart00370	26	LRR Leucine-rich repeats, outliers.	95.64
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.3
KOG4308	478	consensus LRR-containing protein [Function unknown	94.44
KOG4341	483	consensus F-box protein containing LRR [General fu	94.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.94
KOG4308	478	consensus LRR-containing protein [Function unknown	93.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.19
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.01
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.78
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.48
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.87

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=2.5e-21  Score=167.55  Aligned_cols=162  Identities=27%  Similarity=0.364  Sum_probs=92.4

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|++++|.+....+..+..+++|+.|++++|.  +   .+.+|..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV--L---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCc--c---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            4555555555544445556666666666666666  3   4455555666666666666666655555556666666666


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      |++++|   ...+.+|. +..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       217 L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        217 IYLGYN---NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             EECcCC---ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            666666   33444454 55555566666665555555555555555555555555555545555555555555555555


Q ss_pred             CcccccCChhH
Q 038090          162 CNILGKIPTSL  172 (186)
Q Consensus       162 n~~~~~~p~~~  172 (186)
                      |.+.+.+|..+
T Consensus       294 n~l~~~~p~~~  304 (968)
T PLN00113        294 NSLSGEIPELV  304 (968)
T ss_pred             CeeccCCChhH
Confidence            55554444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=3.7e-21  Score=166.47  Aligned_cols=163  Identities=28%  Similarity=0.309  Sum_probs=104.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+....+..+.++++|++|++++|.  +   .+.+|..+..+.+|++|++++|.+.+..|..++.+++|+
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--L---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCC--C---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            57778888887766667777788888888888877  4   556666777777777777777777666666777777777


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|   ...+.+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus       240 ~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        240 HLDLVYN---NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             EEECcCc---eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            7777777   33444555 5566666666666666555555555555555555555555555555555555555555555


Q ss_pred             CCcccccCChhH
Q 038090          161 SCNILGKIPTSL  172 (186)
Q Consensus       161 ~n~~~~~~p~~~  172 (186)
                      +|.+.+.+|..+
T Consensus       317 ~n~~~~~~~~~~  328 (968)
T PLN00113        317 SNNFTGKIPVAL  328 (968)
T ss_pred             CCccCCcCChhH
Confidence            555554444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.82  E-value=3.8e-22  Score=136.03  Aligned_cols=159  Identities=23%  Similarity=0.265  Sum_probs=143.3

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      .++|.++++.++ ..++.|+.+.+|+.|++++|+      ....|..+..+++|+.|.+..|.+. ..|..|+.++.|+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            467889999886 448899999999999999999      6789999999999999999999877 68999999999999


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      ||+++|.+.  ...+|. +-.++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|.+++.+..|++|++.+
T Consensus       107 ldltynnl~--e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  107 LDLTYNNLN--ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhccccccc--cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999999432  235677 888899999999999998 78999999999999999999998 8999999999999999999


Q ss_pred             CcccccCChhHHH
Q 038090          162 CNILGKIPTSLLI  174 (186)
Q Consensus       162 n~~~~~~p~~~~~  174 (186)
                      |+++ .+|+++++
T Consensus       183 nrl~-vlppel~~  194 (264)
T KOG0617|consen  183 NRLT-VLPPELAN  194 (264)
T ss_pred             ceee-ecChhhhh
Confidence            9998 99998874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.66  E-value=3.3e-17  Score=129.85  Aligned_cols=167  Identities=22%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +++|++++|.|++.....|..+.+|..|.|+.|.  +   ..-.+..|+.+++|+.|++..|.+.-.-.-.|.++++|+.
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr--i---ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n  249 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR--I---TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN  249 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCc--c---cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence            4556666666665555566666666666666666  2   2222234555666666666666554322345555666666


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |.+.+|.+....+..  +..+..++.|++..|++...-.+++..++.|++|+++.|.+....+++|+.+++|+.|++++|
T Consensus       250 lklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhhcCcccccCcc--eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            666665433221111  556666667777776666555566666777777777777776545566666777777777777


Q ss_pred             cccccCChhHHHhCC
Q 038090          163 NILGKIPTSLLIRLP  177 (186)
Q Consensus       163 ~~~~~~p~~~~~~l~  177 (186)
                      +++ ++++.-++.+.
T Consensus       328 ~i~-~l~~~sf~~L~  341 (873)
T KOG4194|consen  328 RIT-RLDEGSFRVLS  341 (873)
T ss_pred             ccc-cCChhHHHHHH
Confidence            776 66655444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.64  E-value=1.6e-17  Score=133.04  Aligned_cols=162  Identities=25%  Similarity=0.269  Sum_probs=115.9

Q ss_pred             ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090            5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS   84 (186)
Q Consensus         5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   84 (186)
                      .|++++|+|.++.-+.+.++..|-+||+|+|.      .+.+|+....+..||+|.+++|++.-.--..+..|++|++|.
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr------Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNR------LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH  203 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccch------hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence            56777777777766667788888888888887      456777777788888888888876532223455566667777


Q ss_pred             eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090           85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN  163 (186)
Q Consensus        85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~  163 (186)
                      +++.+  .-...+|. +-.+.+|+.++++.|.+. .+|..+.++.+|+.|+|++|+++ ++....+.+.+|.+|+++.|+
T Consensus       204 ms~Tq--RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  204 MSNTQ--RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             ccccc--chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence            76663  22345666 677777888888888776 77888888888888888888887 666666677778888888888


Q ss_pred             ccccCChhHHHhCCC
Q 038090          164 ILGKIPTSLLIRLPP  178 (186)
Q Consensus       164 ~~~~~p~~~~~~l~~  178 (186)
                      ++ .+|..++ .++.
T Consensus       280 Lt-~LP~avc-KL~k  292 (1255)
T KOG0444|consen  280 LT-VLPDAVC-KLTK  292 (1255)
T ss_pred             hc-cchHHHh-hhHH
Confidence            87 7777776 3443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=6e-17  Score=128.40  Aligned_cols=170  Identities=19%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|..|.++.|.++...+..|.++++|+.|||..|.  +   ....--.|.++++|+.|.+.+|++...-.+.|..|.+++
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--i---rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--I---RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccc--e---eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            56788999999998888899999999999999999  3   222234588999999999999998876677889999999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|+++.|.++.+....  +..++.|+.|++++|.|.+..++.+..+++|+.|+|++|.+...-+..+..+..|++|+++.
T Consensus       273 ~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             eeecccchhhhhhccc--ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence            9999999665443321  55777788888888888777777777788888888888888733334466677777777777


Q ss_pred             CcccccCChhHHHhCCCC
Q 038090          162 CNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       162 n~~~~~~p~~~~~~l~~~  179 (186)
                      |.+. .+.+..+..+.++
T Consensus       351 Nsi~-~l~e~af~~lssL  367 (873)
T KOG4194|consen  351 NSID-HLAEGAFVGLSSL  367 (873)
T ss_pred             cchH-HHHhhHHHHhhhh
Confidence            7776 6666665555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.61  E-value=1.6e-17  Score=126.49  Aligned_cols=155  Identities=25%  Similarity=0.272  Sum_probs=111.3

Q ss_pred             hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090           18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL   97 (186)
Q Consensus        18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   97 (186)
                      ++.+..+.++..+++.+|.      ..+.|+..-.++.|++|+...|-+. .+|+.++.+.+|..||+.+|.+    ..+
T Consensus       153 p~~~~~~~~l~~l~~~~n~------l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki----~~l  221 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNK------LKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI----RFL  221 (565)
T ss_pred             chHHHHHHHHHHhhccccc------hhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc----ccC
Confidence            4444444555555555555      2333333333566666666666555 4566777777777777777743    345


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCCcccC-CCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhC
Q 038090           98 PKSQKGSLLEDLRLSFTKFLGKIPPSLG-NLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL  176 (186)
Q Consensus        98 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l  176 (186)
                      |++..|..|.++.++.|.+. .+|.... .+..+.+||+..|+++ ++|+++..+++|.++|+++|.++ .+|.++++-+
T Consensus       222 Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlh  298 (565)
T KOG0472|consen  222 PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLH  298 (565)
T ss_pred             CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccce
Confidence            56777777778878777776 4555444 7889999999999999 99999999999999999999999 9999999776


Q ss_pred             CCCCCCCCCC
Q 038090          177 PPSVALSSTP  186 (186)
Q Consensus       177 ~~~~~l~~~~  186 (186)
                      .....+-+||
T Consensus       299 L~~L~leGNP  308 (565)
T KOG0472|consen  299 LKFLALEGNP  308 (565)
T ss_pred             eeehhhcCCc
Confidence            6778888887

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.58  E-value=1.1e-16  Score=128.21  Aligned_cols=170  Identities=21%  Similarity=0.234  Sum_probs=120.2

Q ss_pred             ccceeccccccc-CcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            3 QRKINEQDFGVE-TSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         3 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      |..|.+++.+-+ ...|..+..+.+|..+|+|.|+      ...+|+.+-.+++|+.|++++|.++ .+-...+...+|+
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE  271 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccC------CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh
Confidence            444555554322 3346666777777777777777      3456666777777777777777766 3444555666777


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      .|++++|+++    .+|+ +++++.|+.|++.+|++... +|..++++.+|+.++.++|.+. .+|+++..|..|+.|.+
T Consensus       272 tLNlSrNQLt----~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  272 TLNLSRNQLT----VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhccccchhc----cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            7777777432    4566 77788888888888876544 7788888888888888888888 88888888888999999


Q ss_pred             cCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          160 SSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      ++|++. .+|++|. -+|.+  .++..||
T Consensus       347 ~~NrLi-TLPeaIH-lL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  347 DHNRLI-TLPEAIH-LLPDLKVLDLRENP  373 (1255)
T ss_pred             ccccee-echhhhh-hcCCcceeeccCCc
Confidence            999887 8888886 45543  4555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.4e-16  Score=108.99  Aligned_cols=143  Identities=23%  Similarity=0.342  Sum_probs=127.2

Q ss_pred             hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090           19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP   98 (186)
Q Consensus        19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~   98 (186)
                      +.+..+.+++.|-+|+|.      ...+|+.+..+.+|+.|.+++|+++ .+|.+++.+++|+.|+++.|.+    ..+|
T Consensus        27 ~gLf~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl----~~lp   95 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL----NILP   95 (264)
T ss_pred             ccccchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh----hcCc
Confidence            345678899999999999      4567778899999999999999988 5888999999999999999853    3557


Q ss_pred             C-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090           99 K-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI  174 (186)
Q Consensus        99 ~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~  174 (186)
                      . ++..+.|+.||+.+|++. ..+|..|..++.|+.|+++.|.++ .+|..++++++|+.|.+..|.+. ++|++++.
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~  171 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD  171 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence            7 999999999999998874 458999999999999999999999 89999999999999999999998 99999973

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=1.3e-15  Score=115.84  Aligned_cols=167  Identities=20%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecc-ccCCCCcccccCCCCCCCe
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~   82 (186)
                      ..+.|..|+|+.+.+.+|..+++|+.||||+|+  +   ...-|..|.++.++..|-+.+ |+++......|.++.+++.
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--I---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccc--h---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            356777788887777788888888888888888  4   445566777777777777766 6665444445666666666


Q ss_pred             Eeecccccc-----------------------------------------------------------------------
Q 038090           83 LSISECSSQ-----------------------------------------------------------------------   91 (186)
Q Consensus        83 L~l~~~~l~-----------------------------------------------------------------------   91 (186)
                      |.+.-|.+.                                                                       
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            655555444                                                                       


Q ss_pred             -----------------------------------ccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090           92 -----------------------------------DLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY  134 (186)
Q Consensus        92 -----------------------------------~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  134 (186)
                                                         ......|.  +..+++|+.|++++|.+++.-+.+|.....+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                               11122333  56778888888888888877778888888888888


Q ss_pred             cCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHHhCC
Q 038090          135 LSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLIRLP  177 (186)
Q Consensus       135 L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~  177 (186)
                      |..|+++ .+. ..|..+..|++|++.+|+|+ .+....++.+-
T Consensus       305 L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~  346 (498)
T KOG4237|consen  305 LTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLF  346 (498)
T ss_pred             cCcchHH-HHHHHhhhccccceeeeecCCeeE-EEecccccccc
Confidence            8888888 443 34677888888999888888 55554444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=2.2e-14  Score=109.78  Aligned_cols=117  Identities=20%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             HHHcCCccceEEeccccCCCC----cccccCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCCCc
Q 038090           49 LAKKLTNLIEIYLIDVDTSSA----VSPTLTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKIPP  122 (186)
Q Consensus        49 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~  122 (186)
                      .+..+++|++|++++|.+.+.    .+..+..+++|++|++++|.+.... ..+.. +..+++|+.|++++|.+.+....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            334444555555555544421    1122333345555555555322110 01112 33445555555555555432111


Q ss_pred             ccC-----CCCCCCEEEcCCCcCCC----CCchhhhccCCCCEEeccCCccc
Q 038090          123 SLG-----NLTNLEDRYLSDNGFSG----ELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       123 ~~~-----~l~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      .+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.+.
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            111     12455666666655542    12223344455666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=8.3e-15  Score=111.88  Aligned_cols=121  Identities=22%  Similarity=0.253  Sum_probs=101.5

Q ss_pred             ccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCC
Q 038090           43 KSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIP  121 (186)
Q Consensus        43 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  121 (186)
                      .+.+|..++.+++|..|++++|.+. .+|..++.+..||.++++.|+    +.++|. +...+.++.+-.++|++....+
T Consensus       424 isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr----Fr~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  424 ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR----FRMLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc----cccchHHHhhHHHHHHHHhccccccccCh
Confidence            4556777888999999999999877 578889999999999999984    456677 5566667777667788886666


Q ss_pred             cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChh
Q 038090          122 PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS  171 (186)
Q Consensus       122 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~  171 (186)
                      ..++.|.+|..||+.+|.+. .+|+.+++|.+|++|.+++|+|.  +|.+
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            77999999999999999999 89999999999999999999996  4543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.45  E-value=4.4e-14  Score=108.18  Aligned_cols=163  Identities=21%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             CccceecccccccCcChhhHHhhcc---cCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCC----cccc
Q 038090            2 SQRKINEQDFGVETSNISRVARALQ---LGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSA----VSPT   73 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~   73 (186)
                      +|++|++++|.+....+..+..+..   |+.|++++|.+.. .....+...+..+ ++|+.|++++|.+++.    ....
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            4555566655554333444444444   6666666665210 0001122333444 5666666666655521    1223


Q ss_pred             cCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCCCchh
Q 038090           74 LTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGELPTS  147 (186)
Q Consensus        74 ~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~  147 (186)
                      +..+..|++|++++|.+.... ..++. +...++|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            444555666666666332100 01112 23334666666666655422    2233445566666666666665322222


Q ss_pred             hh-c----cCCCCEEeccCCccc
Q 038090          148 LG-K----LNSLKTFDISSCNIL  165 (186)
Q Consensus       148 ~~-~----~~~L~~l~l~~n~~~  165 (186)
                      +. .    .+.|+++++++|.++
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCC
Confidence            21 1    256666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.45  E-value=6.1e-13  Score=117.15  Aligned_cols=45  Identities=33%  Similarity=0.538  Sum_probs=29.3

Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090          128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      ++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            356666666665555677777777777777777764334666544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.40  E-value=2.6e-12  Score=113.20  Aligned_cols=79  Identities=22%  Similarity=0.201  Sum_probs=39.8

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++..... .+.++.+++|+.|++++|.  .   ...+|..+..+.+|+.|++++|.....+|..+ .+++|+
T Consensus       635 ~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~--~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        635 GLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCS--S---LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             CCCEEECCCCCCcCc-CCccccCCcccEEEecCCC--C---ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            455666665532222 2235556666666666665  2   34455556666666666666554333334332 334444


Q ss_pred             eEeecc
Q 038090           82 YLSISE   87 (186)
Q Consensus        82 ~L~l~~   87 (186)
                      +|++++
T Consensus       708 ~L~Lsg  713 (1153)
T PLN03210        708 RLNLSG  713 (1153)
T ss_pred             EEeCCC
Confidence            444433

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.34  E-value=9.5e-12  Score=104.51  Aligned_cols=61  Identities=26%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      +|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ++|++|++++|.++ .+|..+
T Consensus       326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l  386 (754)
T PRK15370        326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL  386 (754)
T ss_pred             cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence            4555555555554 3443332  45666666666665 4554442  45666666666665 555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=8.7e-12  Score=104.60  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             CCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090          130 LEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       130 L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      |+.|++++|+++ .+|..+..+++|+.+++++|++++..|..+
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            333444444444 445455555555555555555555444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.28  E-value=1.9e-11  Score=102.66  Aligned_cols=73  Identities=25%  Similarity=0.424  Sum_probs=56.8

Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC--CCC
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP--SVA  181 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~--~~~  181 (186)
                      .+|+.|++++|.+. .+|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..++ .++.  .+.
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~-~L~~L~~Ld  451 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLI-HLSSETTVN  451 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHh-hccCCCeEE
Confidence            36888899888887 45543   367999999999998 67753   346889999999998 9999887 4554  467


Q ss_pred             CCCCC
Q 038090          182 LSSTP  186 (186)
Q Consensus       182 l~~~~  186 (186)
                      +++||
T Consensus       452 Ls~N~  456 (788)
T PRK15387        452 LEGNP  456 (788)
T ss_pred             CCCCC
Confidence            77776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=4.6e-11  Score=100.48  Aligned_cols=147  Identities=18%  Similarity=0.200  Sum_probs=79.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|++++|.++.. +..+  ..+|+.|++++|.  +    ..+|..+.  .+|+.|++++|.+. .+|..+.  .+|+
T Consensus       200 ~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~--L----tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~  265 (754)
T PRK15370        200 QITTLILDNNELKSL-PENL--QGNIKTLYANSNQ--L----TSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQ  265 (754)
T ss_pred             CCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCc--c----ccCChhhh--ccccEEECcCCccC-cCChhHh--CCCC
Confidence            355666666666533 2322  2466666666666  2    23333322  34555566655554 2333332  3455


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccC-------------------CCCCCCEEEcCCCcCC
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLG-------------------NLTNLEDRYLSDNGFS  141 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------~l~~L~~L~L~~n~~~  141 (186)
                      +|++++|.+.    .+|. +.  .+|+.|++++|.+. .+|..+.                   ..++|+.|++++|.++
T Consensus       266 ~L~Ls~N~L~----~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        266 SLDLFHNKIS----CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT  338 (754)
T ss_pred             EEECcCCccC----ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence            6666555332    2232 21  24555555555544 2222111                   1256777777777777


Q ss_pred             CCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090          142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       142 ~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                       .+|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       339 -~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp  366 (754)
T PRK15370        339 -SLPASLP--PELQVLDVSKNQIT-VLPETLP  366 (754)
T ss_pred             -cCChhhc--CcccEEECCCCCCC-cCChhhc
Confidence             5665543  68889999999887 7777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=2.1e-13  Score=108.11  Aligned_cols=153  Identities=20%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090            5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS   84 (186)
Q Consensus         5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   84 (186)
                      .+.+.++.+..+ +..++.+..|+++||+.|+      ....|..+..++ |+.|.+++|++. .+|+.++....|..|+
T Consensus       102 ~liLy~n~~r~i-p~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen  102 SLILYHNCIRTI-PEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHHhccceec-chhhhhhhHHHHhhhccch------hhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhh
Confidence            344445544432 5666677777777777776      355555555555 667777777665 4566666666777777


Q ss_pred             eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090           85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN  163 (186)
Q Consensus        85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~  163 (186)
                      .+.|.+    ..+|. ++.+.+|+.+.+.+|.+. .+|..+. .-.|..||++.|++. .+|..|.+|+.|++|-|.+|+
T Consensus       173 ~s~nei----~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  173 VSKNEI----QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhh----hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCC
Confidence            777743    23344 666667777777777766 5566665 334677777777777 777777777777777777777


Q ss_pred             ccccCChhHHH
Q 038090          164 ILGKIPTSLLI  174 (186)
Q Consensus       164 ~~~~~p~~~~~  174 (186)
                      +. +-|..|+.
T Consensus       246 Lq-SPPAqIC~  255 (722)
T KOG0532|consen  246 LQ-SPPAQICE  255 (722)
T ss_pred             CC-CChHHHHh
Confidence            76 66666653

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=2.5e-11  Score=100.81  Aligned_cols=104  Identities=28%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             cceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090           56 LIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY  134 (186)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  134 (186)
                      ++.|++++|.+.+..|..++.+++|+.|++++|   .+.+.+|. ++.+++|+.|++++|.+.+.+|..++.+++|++|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N---~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN---SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCC---cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            444455555555444545555555555555555   33344444 44555555555555555544555555555555555


Q ss_pred             cCCCcCCCCCchhhhcc-CCCCEEeccCC
Q 038090          135 LSDNGFSGELPTSLGKL-NSLKTFDISSC  162 (186)
Q Consensus       135 L~~n~~~~~~~~~~~~~-~~L~~l~l~~n  162 (186)
                      +++|.+.+.+|..++.. .++..+++.+|
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCC
Confidence            55555555555444332 23444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=1.1e-11  Score=86.61  Aligned_cols=107  Identities=21%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHH-cCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCC-
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS-  100 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-  100 (186)
                      ++.++++|++++|.  +    ..+. .+. .+.+|+.|++++|.+...  +.+..++.|+.|++++|.++....   .+ 
T Consensus        17 n~~~~~~L~L~~n~--I----~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~---~l~   84 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ--I----STIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE---GLD   84 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH---HHH
T ss_pred             cccccccccccccc--c----cccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc---chH
Confidence            34445556666665  2    2221 122 345555556655555532  234445555555555553332211   01 


Q ss_pred             CCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCC
Q 038090          101 QKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      ..+++|+.|++++|.+... .-..+..+++|++|++.+|.+.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            1344555555555554321 1123334455555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=9e-13  Score=109.48  Aligned_cols=159  Identities=19%  Similarity=0.211  Sum_probs=94.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccc-----------------cccccchhHHHHcCCccceEEeccc
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAF-----------------KLQKSGLSNLAKKLTNLIEIYLIDV   64 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~~~l~~L~~L~l~~~   64 (186)
                      .|.+++++++.+... +.++..|.+|+.++..+|.+.-                 .-....+|+...++.+|++|++..|
T Consensus       242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             cceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            356677777776644 4777888888888888877300                 0001224445555678888888877


Q ss_pred             cCCCCcccccCC-------------------------CCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC
Q 038090           65 DTSSAVSPTLTN-------------------------LSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK  119 (186)
Q Consensus        65 ~~~~~~~~~~~~-------------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (186)
                      ++...++..+..                         ++.|+.|++.+|.++  ...+|-+.+..+|+.|.+++|.+. .
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt--d~c~p~l~~~~hLKVLhLsyNrL~-~  397 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT--DSCFPVLVNFKHLKVLHLSYNRLN-S  397 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc--ccchhhhccccceeeeeecccccc-c
Confidence            665322211111                         233566666666432  234444677778888888888776 4


Q ss_pred             CC-cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          120 IP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       120 ~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +| ..+.++..|++|+|++|+++ .+|..+..++.|++|...+|++.
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            55 34567777888888888777 55544444444444444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=6.9e-13  Score=105.26  Aligned_cols=165  Identities=23%  Similarity=0.223  Sum_probs=138.2

Q ss_pred             ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090            5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS   84 (186)
Q Consensus         5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   84 (186)
                      ..+++.+.+.. .+..++.+..|+.+.+..|.      ...+|+.+..+..|..|+++.|.++ ..|..++.++ |+.|-
T Consensus        79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~------~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   79 FADLSRNRFSE-LPEEACAFVSLESLILYHNC------IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             hhhcccccccc-CchHHHHHHHHHHHHHHhcc------ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            45777777654 47778999999999999998      6788889999999999999999988 4677777766 88898


Q ss_pred             eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090           85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN  163 (186)
Q Consensus        85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~  163 (186)
                      +++|.+    ..+|+ ++-...|..++.+.|.+. ..|..++++.+|+.+.+..|.+. .+|+++..++ |..||+++|+
T Consensus       150 ~sNNkl----~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk  222 (722)
T KOG0532|consen  150 VSNNKL----TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK  222 (722)
T ss_pred             EecCcc----ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence            999853    45566 788888999999999987 78888999999999999999999 8888888555 9999999999


Q ss_pred             ccccCChhHHH-hCCCCCCCCCCC
Q 038090          164 ILGKIPTSLLI-RLPPSVALSSTP  186 (186)
Q Consensus       164 ~~~~~p~~~~~-~l~~~~~l~~~~  186 (186)
                      ++ .+|..|.+ +..+.+.|..||
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCC
Confidence            99 99999974 334566777776

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=2.7e-11  Score=100.62  Aligned_cols=93  Identities=37%  Similarity=0.593  Sum_probs=86.5

Q ss_pred             CCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEe
Q 038090           80 LIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFD  158 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~  158 (186)
                      ++.|++++|   .+.+.+|. ++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|++|+
T Consensus       420 v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCC---CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            678899999   56778888 99999999999999999989999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCChhHHHh
Q 038090          159 ISSCNILGKIPTSLLIR  175 (186)
Q Consensus       159 l~~n~~~~~~p~~~~~~  175 (186)
                      +++|.++|.+|..+...
T Consensus       497 Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        497 LNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CcCCcccccCChHHhhc
Confidence            99999999999998754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=1.5e-12  Score=108.25  Aligned_cols=128  Identities=26%  Similarity=0.233  Sum_probs=90.2

Q ss_pred             hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCC
Q 038090           24 ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQK  102 (186)
Q Consensus        24 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~  102 (186)
                      +..|++|.+.+|.  +   +....+-+.++.+|+.|++++|.+...+...+.++..|++|++++|.++    .+|. +..
T Consensus       358 ~~~Lq~LylanN~--L---td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~----~Lp~tva~  428 (1081)
T KOG0618|consen  358 HAALQELYLANNH--L---TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT----TLPDTVAN  428 (1081)
T ss_pred             hHHHHHHHHhcCc--c---cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh----hhhHHHHh
Confidence            3556667777777  4   5555556777888888888888877665667788888888888888544    3445 667


Q ss_pred             CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC-CchhhhccCCCCEEeccCCc
Q 038090          103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCN  163 (186)
Q Consensus       103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~  163 (186)
                      +..|+.|....|.+. .+| .+..++.|+.+|++.|.++-. +++ -...++|++||+++|.
T Consensus       429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence            777888877777776 677 677788888888888877722 222 2223778888888885

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=6.1e-11  Score=93.66  Aligned_cols=154  Identities=32%  Similarity=0.409  Sum_probs=99.1

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++.+... +..+..+++|+.|++++|+      ...++......+.|+.|++++|.+.. .|........|+
T Consensus       141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~------l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND------LSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALE  212 (394)
T ss_pred             hcccccccccchhhh-hhhhhccccccccccCCch------hhhhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhhh
Confidence            456666666665533 2455667777777777776      34455444456677777777776663 444444455577


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      ++.+++|.   . ...+. +...+++..+.+..|.+. ..+..++.+.+++.|++++|.++ .++. ++...+++.++++
T Consensus       213 ~l~~~~N~---~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s  285 (394)
T COG4886         213 ELDLSNNS---I-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLS  285 (394)
T ss_pred             hhhhcCCc---c-eecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEecc
Confidence            77777762   1 12223 556666777776676665 33666777788888888888888 6555 7788888888888


Q ss_pred             CCcccccCCh
Q 038090          161 SCNILGKIPT  170 (186)
Q Consensus       161 ~n~~~~~~p~  170 (186)
                      +|.++...|.
T Consensus       286 ~n~~~~~~~~  295 (394)
T COG4886         286 GNSLSNALPL  295 (394)
T ss_pred             Cccccccchh
Confidence            8888744333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.6e-11  Score=81.92  Aligned_cols=127  Identities=24%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             HcCCccceEEeccccCCCCcccccC-CCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCccc-CCCC
Q 038090           51 KKLTNLIEIYLIDVDTSSAVSPTLT-NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSL-GNLT  128 (186)
Q Consensus        51 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~  128 (186)
                      .+...+++|++++|.++..  +.++ .+.+|+.|++++|.+..+.    .+..++.|+.|++++|.+.. +...+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            3445688899999987743  3454 5788999999999665432    25677889999999999874 44334 3578


Q ss_pred             CCCEEEcCCCcCCCC-CchhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCCCCC
Q 038090          129 NLEDRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVALSST  185 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l~~~  185 (186)
                      +|++|++++|++... --..++.+++|++|++.+|+++ .-+.   .+...+|++..|++.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence            899999999988731 1244678889999999999998 4442   445578888877763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.1e-11  Score=92.05  Aligned_cols=162  Identities=24%  Similarity=0.278  Sum_probs=92.2

Q ss_pred             CccceecccccccCcCh-hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc-cCCCCC
Q 038090            2 SQRKINEQDFGVETSNI-SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-LTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~   79 (186)
                      +|+++.+.++.+..... .....|++++.||++.|=|.-   +..+.....++++|+.|.++.|.+.....+. -..++.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46667777776654332 345678888888888886321   3445556677888888888888766322221 123455


Q ss_pred             CCeEeecccccc----------------------c--cccCCCCCCCCCcccEEEccCCcCCCCCC--cccCCCCCCCEE
Q 038090           80 LIYLSISECSSQ----------------------D--LFGYLPKSQKGSLLEDLRLSFTKFLGKIP--PSLGNLTNLEDR  133 (186)
Q Consensus        80 L~~L~l~~~~l~----------------------~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L  133 (186)
                      |+.|.++.|.+.                      .  .....+ ....+.|+.|++++|++. .++  ...+.++.|..|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            666666666444                      0  000000 122345666677666655 223  344566777777


Q ss_pred             EcCCCcCCC-CCchh-----hhccCCCCEEeccCCcccccCC
Q 038090          134 YLSDNGFSG-ELPTS-----LGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       134 ~L~~n~~~~-~~~~~-----~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      +++.+++.. ..|+.     -...++|++|++..|++. +++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~  317 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWR  317 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccc-ccc
Confidence            777776662 12221     134567777777777775 444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=3.4e-11  Score=89.52  Aligned_cols=132  Identities=24%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCC
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQK  102 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  102 (186)
                      .-+.|+++|+|+|.      ...+-++++-++.++.|+++.|.+.. .. .+..+++|+.||+++|.+..+.+-   -.+
T Consensus       282 TWq~LtelDLS~N~------I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gw---h~K  350 (490)
T KOG1259|consen  282 TWQELTELDLSGNL------ITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGW---HLK  350 (490)
T ss_pred             hHhhhhhccccccc------hhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhh---Hhh
Confidence            34678899999998      57788888889999999999998874 34 488899999999999965544331   246


Q ss_pred             CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCC
Q 038090          103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      +.+...|.++.|.+.+  -..++++.+|..||+.+|++. .+.  ..+++++.|.++.+.+|++. .+|
T Consensus       351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~-~~v  415 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA-GSV  415 (490)
T ss_pred             hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence            6778889999998862  345778899999999999998 442  45899999999999999997 444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=2.3e-10  Score=90.41  Aligned_cols=153  Identities=31%  Similarity=0.369  Sum_probs=113.3

Q ss_pred             ccceecccccccCcChhhHHhhc-ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            3 QRKINEQDFGVETSNISRVARAL-QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      ++.+++.++.++.. ++....+. +|+.|++++|.      ...++..+..+++|+.|+++.|++.. .+...+..+.|+
T Consensus       118 l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~------i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~  189 (394)
T COG4886         118 LTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNK------IESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLN  189 (394)
T ss_pred             eeEEecCCcccccC-ccccccchhhcccccccccc------hhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhh
Confidence            55677777776543 44445553 88888888888      45565567788888888888888774 555555788888


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      .+++++|.+.    .+|. ......|+.+.+++|.+. ..+..+.++.++..+.+.+|++. ..+..++.++++++++++
T Consensus       190 ~L~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         190 NLDLSGNKIS----DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS  263 (394)
T ss_pred             heeccCCccc----cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence            8888888543    3344 334555888888888644 56667788888888888898888 556778888999999999


Q ss_pred             CCcccccCCh
Q 038090          161 SCNILGKIPT  170 (186)
Q Consensus       161 ~n~~~~~~p~  170 (186)
                      +|.++ .++.
T Consensus       264 ~n~i~-~i~~  272 (394)
T COG4886         264 NNQIS-SISS  272 (394)
T ss_pred             ccccc-cccc
Confidence            99998 7776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.97  E-value=5.4e-10  Score=85.65  Aligned_cols=111  Identities=19%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      .||+|++++|.++.+...+|.++.++++|.|..|.  +   .......|.++..|++|++++|+++...|..|..+.+|.
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~--l---~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK--L---EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcch--H---HHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            58899999999998888899999999999999999  4   333445688999999999999999988888999999999


Q ss_pred             eEeecccccc--------------ccccCCCCCCCCCcccEEEccCCcCC
Q 038090           82 YLSISECSSQ--------------DLFGYLPKSQKGSLLEDLRLSFTKFL  117 (186)
Q Consensus        82 ~L~l~~~~l~--------------~~~~~~~~~~~~~~L~~L~l~~~~~~  117 (186)
                      ++++-.|..-              .-....|..+....++.+.++++.+.
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~  399 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFG  399 (498)
T ss_pred             eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccc
Confidence            9998776543              11112233566667777777766553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=2.1e-10  Score=86.46  Aligned_cols=150  Identities=23%  Similarity=0.239  Sum_probs=77.3

Q ss_pred             HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc-------------cCCCCCCCeEeeccc
Q 038090           22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-------------LTNLSSLIYLSISEC   88 (186)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~   88 (186)
                      ..+++|+.+|||+|.|.. .-...+-..+..+..|++|.+.+|.+.......             .+.-+.|+++.+.+|
T Consensus        89 ~~~~~L~~ldLSDNA~G~-~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGP-KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             hcCCceeEeeccccccCc-cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            445677777777777311 001123334455667777777777665332222             222345677777666


Q ss_pred             cccccccC-CCC-CCCCCcccEEEccCCcCCCCC----CcccCCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEe
Q 038090           89 SSQDLFGY-LPK-SQKGSLLEDLRLSFTKFLGKI----PPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFD  158 (186)
Q Consensus        89 ~l~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~  158 (186)
                      ++...... +.. ++.++.|+.+.+..|.+....    ...+..++.|+.||++.|-++..    +...+..+++|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            55422211 112 444555666666665554221    23445566666666666666532    223345556666666


Q ss_pred             ccCCcccccCChhH
Q 038090          159 ISSCNILGKIPTSL  172 (186)
Q Consensus       159 l~~n~~~~~~p~~~  172 (186)
                      +++|.+...--.++
T Consensus       248 l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  248 LGDCLLENEGAIAF  261 (382)
T ss_pred             ccccccccccHHHH
Confidence            66666654433333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=3.6e-10  Score=85.16  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             CccceecccccccCcChhhH----HhhcccCeeeCCCCCccccccccch-h---------HHHHcCCccceEEeccccCC
Q 038090            2 SQRKINEQDFGVETSNISRV----ARALQLGVLDLSYNHFAFKLQKSGL-S---------NLAKKLTNLIEIYLIDVDTS   67 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~-~---------~~~~~l~~L~~L~l~~~~~~   67 (186)
                      .|++|+|++|.+....++.+    ..+..|+.|.+.+|+  ++...+.. .         .....-+.|+++...+|.+.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            58899999998877766665    578999999999999  42222221 1         11122378999999999877


Q ss_pred             CCc----ccccCCCCCCCeEeeccccccccccCC-CC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCC
Q 038090           68 SAV----SPTLTNLSSLIYLSISECSSQDLFGYL-PK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSD  137 (186)
Q Consensus        68 ~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~  137 (186)
                      ...    ...|...+.|+.+.++.|.+..--... .. +..+++|+.|++.+|.++..    +...++.|+.|++++++.
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            432    345677889999999999764322211 23 78899999999999988644    456677889999999999


Q ss_pred             CcCCCCCchhh-----hccCCCCEEeccCCcccc
Q 038090          138 NGFSGELPTSL-----GKLNSLKTFDISSCNILG  166 (186)
Q Consensus       138 n~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~  166 (186)
                      |.++.....++     ...++|+++.+.+|.++.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            99986655443     356899999999999974

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1.1e-09  Score=63.39  Aligned_cols=61  Identities=36%  Similarity=0.474  Sum_probs=44.1

Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcc
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~  164 (186)
                      ++|+.|++++|.+....+..|..+++|++|++++|.+...-+..|..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3577777777777644446777788888888888888733345677888888888888764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.8e-09  Score=62.55  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090           49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC   88 (186)
Q Consensus        49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (186)
                      .|.++++|++|++++|.+....+..|.++++|+++++++|
T Consensus        20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444555555555555554444445555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=5.5e-10  Score=83.21  Aligned_cols=127  Identities=21%  Similarity=0.128  Sum_probs=100.1

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.+++++|.|+.+ -+.+.-.+.++.|++|+|.  +    ..+- .+..+.+|+.|++++|.++. ..+.=.++.+++.
T Consensus       286 LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~--i----~~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  286 LTELDLSGNLITQI-DESVKLAPKLRRLILSQNR--I----RTVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             hhhccccccchhhh-hhhhhhccceeEEeccccc--e----eeeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence            67899999988644 3556678999999999999  3    2332 37789999999999998774 3334456889999


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSG  142 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~  142 (186)
                      |.++.|.+...++    +.++.+|..||+.+|++... --..+++++-|+++.|.+|.+.+
T Consensus       357 L~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  357 LKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9999996554433    67888999999999998632 23678999999999999999983

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.75  E-value=4.8e-09  Score=77.12  Aligned_cols=150  Identities=19%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             hHHhhcccCeeeCCCCCccccccccchhH----HHHcCCccceEEeccccCCCCcccccC-------------CCCCCCe
Q 038090           20 RVARALQLGVLDLSYNHFAFKLQKSGLSN----LAKKLTNLIEIYLIDVDTSSAVSPTLT-------------NLSSLIY   82 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~l~~L~~   82 (186)
                      ++.+|++|+.+++|+|.|     ...+|+    .+..-..|.+|.+++|.+....++.++             .-+.|+.
T Consensus        87 aLlkcp~l~~v~LSDNAf-----g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~  161 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAF-----GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV  161 (388)
T ss_pred             HHhcCCcceeeecccccc-----CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence            445667777777777773     223332    233446677777777766544333333             2355777


Q ss_pred             EeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCC-----CcccCCCCCCCEEEcCCCcCCCCC----chhhhcc
Q 038090           83 LSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKI-----PPSLGNLTNLEDRYLSDNGFSGEL----PTSLGKL  151 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~  151 (186)
                      +.+.+|++.+.+...-.  +.....+..+.+..|.|.-+.     -..+..+.+|+.||++.|-++...    ...+..+
T Consensus       162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence            77777765544332222  334445666666666664221     122345677788888877776322    2334556


Q ss_pred             CCCCEEeccCCcccccCChhHHH
Q 038090          152 NSLKTFDISSCNILGKIPTSLLI  174 (186)
Q Consensus       152 ~~L~~l~l~~n~~~~~~p~~~~~  174 (186)
                      +.|+.|.+..|-++.+..+++.+
T Consensus       242 ~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         242 NLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             chhhhccccchhhccccHHHHHH
Confidence            66777777777776555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=6.8e-09  Score=80.56  Aligned_cols=158  Identities=19%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             CccceecccccccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      +|+.|+++.|.+........ ..+++|+.|.++.|++.    ...+--.+..+++|+.|.+.+|.....-.....-+..|
T Consensus       173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls----~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS----WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             cchhcccccccccCCccccchhhhhhhheEEeccCCCC----HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            45555666555442211111 24556666666666632    23333344556677777776664111111223335678


Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCcc-----cCCCCCCCEEEcCCCcCCCCCc--hhhhccC
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPS-----LGNLTNLEDRYLSDNGFSGELP--TSLGKLN  152 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~  152 (186)
                      +.|++++|.+-.+ ...+..+.++.|..|.++.+++.+. .|+.     ...+++|++|++..|++. .++  ..+..++
T Consensus       249 ~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~  326 (505)
T KOG3207|consen  249 QELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLE  326 (505)
T ss_pred             hhccccCCccccc-ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccc
Confidence            8888888854221 1223367778888888888887643 3332     235688999999999886 433  2355667


Q ss_pred             CCCEEeccCCccc
Q 038090          153 SLKTFDISSCNIL  165 (186)
Q Consensus       153 ~L~~l~l~~n~~~  165 (186)
                      +|+.+.+..|.+.
T Consensus       327 nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  327 NLKHLRITLNYLN  339 (505)
T ss_pred             hhhhhhccccccc
Confidence            8888888888775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.62  E-value=2.2e-09  Score=71.22  Aligned_cols=139  Identities=17%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CC
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ  101 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~  101 (186)
                      +-..+..+||+.|++..   ....+..+.+...|..+++++|.+.+.++....+++.++.+++++|.+    ..+|+ +.
T Consensus        25 dakE~h~ldLssc~lm~---i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei----sdvPeE~A   97 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLMY---IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI----SDVPEELA   97 (177)
T ss_pred             HHHHhhhcccccchhhH---HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh----hhchHHHh
Confidence            34567788899988321   222334455567777788899988865454556677888888888843    34566 77


Q ss_pred             CCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090          102 KGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      .++.|+.|++..|.+. ..|..+..+.++..|+..+|... +++..+-.....-..++.++++.+.-+.
T Consensus        98 am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen   98 AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            8888888888888876 66776666788888888888777 6665543333344445566666654443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.59  E-value=3e-08  Score=83.11  Aligned_cols=151  Identities=20%  Similarity=0.141  Sum_probs=103.2

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC-CcccccCCCCCCCeEeeccccccccccCCCCCCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS-AVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG  103 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  103 (186)
                      .+|+.||+++....   ..++....-.-+|.|+.|.+.+-.+.. .+.....++++|..||++++.+....+    ++.+
T Consensus       122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G----IS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG----ISRL  194 (699)
T ss_pred             HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH----Hhcc
Confidence            67888888887621   133333333357899999988866543 233455678889999999986554422    6788


Q ss_pred             CcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCC--ch----hhhccCCCCEEeccCCcccccCChhHHHhC
Q 038090          104 SLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGEL--PT----SLGKLNSLKTFDISSCNILGKIPTSLLIRL  176 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~--~~----~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l  176 (186)
                      ++|+.|.+.+-.+.. ..-..+..+++|++||++........  ..    ....+|.|+.||+|++.+...+.+.+.+.+
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            888888777665542 11234667899999999986665321  11    123578999999999999888888888888


Q ss_pred             CCCCCC
Q 038090          177 PPSVAL  182 (186)
Q Consensus       177 ~~~~~l  182 (186)
                      |.+..+
T Consensus       275 ~~L~~i  280 (699)
T KOG3665|consen  275 PNLQQI  280 (699)
T ss_pred             ccHhhh
Confidence            876554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.49  E-value=5.7e-09  Score=69.27  Aligned_cols=124  Identities=20%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             CccceEEeccccCCCCccc---ccCCCCCCCeEeeccccccccccCCCC-C-CCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090           54 TNLIEIYLIDVDTSSAVSP---TLTNLSSLIYLSISECSSQDLFGYLPK-S-QKGSLLEDLRLSFTKFLGKIPPSLGNLT  128 (186)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~  128 (186)
                      ..+-.+++++|++.- ++.   -+.+-..|+..++++|.+    ..+|. + ...+.++.+++++|.+. .+|..+..|+
T Consensus        27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~  100 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP  100 (177)
T ss_pred             HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence            456677888887653 333   344455677788999843    33444 3 44457888999999997 7888899999


Q ss_pred             CCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH-hCCCCCCCCCC
Q 038090          129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI-RLPPSVALSST  185 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~-~l~~~~~l~~~  185 (186)
                      .|+.++++.|.+. ..|.-+..+.++..|+..+|.+. ++|..+.. ..+.+.++.-+
T Consensus       101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen  101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            9999999999999 66777777899999999999887 88877543 34445554433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9.6e-09  Score=76.48  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=75.8

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-ccccCCC-CCC
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTLTNL-SSL   80 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l-~~L   80 (186)
                      |+.|.+.+..+.+.....+++-++|+.++++.+.   ++......-.+..+..|+.|+++.|...... --.+... .+|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeecccccc---ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            4445555554444444445555555555555554   1222333344455555555555555433211 1111121 245


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcC-CCCCCcccCCCCCCCEEEcCCCcCCCCCch---hhhccCCCC
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKF-LGKIPPSLGNLTNLEDRYLSDNGFSGELPT---SLGKLNSLK  155 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~  155 (186)
                      +.|+++++.-.-....+.- ..+++++..||++++.. +......|.+++-|+++.++.|-..  .|.   .+...++|.
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceE
Confidence            5555555421000111111 34667777777776653 2223344556677777777776443  232   246667778


Q ss_pred             EEeccCC
Q 038090          156 TFDISSC  162 (186)
Q Consensus       156 ~l~l~~n  162 (186)
                      +|++.++
T Consensus       367 yLdv~g~  373 (419)
T KOG2120|consen  367 YLDVFGC  373 (419)
T ss_pred             EEEeccc
Confidence            8776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=2.2e-07  Score=49.84  Aligned_cols=37  Identities=38%  Similarity=0.574  Sum_probs=24.8

Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777777 56666777777777777777776

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=9e-08  Score=82.20  Aligned_cols=153  Identities=27%  Similarity=0.252  Sum_probs=93.2

Q ss_pred             ccceeccccc--ccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            3 QRKINEQDFG--VETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         3 L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      |+.|-++.+.  +.....+.|..++.|+.||+++|.  -   ..++|..++.+-+||.|+++++.+. .+|..++++..|
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--~---l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--S---LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--c---cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            5566666664  445545556778888888888776  3   5677777888888888888887766 577788888888


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCC--CCCCcccCCCCCCCEEEcCC--------------------
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFL--GKIPPSLGNLTNLEDRYLSD--------------------  137 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~--------------------  137 (186)
                      .+|++..+   .....++. ...+++|+.|.+......  ...-..+..+..|+.+....                    
T Consensus       621 ~~Lnl~~~---~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  621 IYLNLEVT---GRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             heeccccc---cccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence            88887776   22333344 455777777776544311  11111222222222222211                    


Q ss_pred             ------CcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          138 ------NGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       138 ------n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                            +... ..+..++.+.+|+.|.+.++.++
T Consensus       698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence                  1111 23444677888888888888875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=1.1e-08  Score=84.10  Aligned_cols=86  Identities=22%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090           73 TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN  152 (186)
Q Consensus        73 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (186)
                      ++.-++.++.|++++|.++.+.    .+..++.|..||+++|.+. .+|..-..=..|..|.+++|-++ .+ .++.+++
T Consensus       182 SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~Lk  254 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLK  254 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhh
Confidence            3333444555555555322111    1444555555555555554 34432221123555555555555 32 2255555


Q ss_pred             CCCEEeccCCccc
Q 038090          153 SLKTFDISSCNIL  165 (186)
Q Consensus       153 ~L~~l~l~~n~~~  165 (186)
                      +|..||+++|-+.
T Consensus       255 sL~~LDlsyNll~  267 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLS  267 (1096)
T ss_pred             hhhccchhHhhhh
Confidence            5555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=1.1e-06  Score=65.03  Aligned_cols=175  Identities=17%  Similarity=0.116  Sum_probs=120.7

Q ss_pred             CccceecccccccCcChhhHH----hhcccCeeeCCCCCccccccccchh-------HHHHcCCccceEEeccccCCCCc
Q 038090            2 SQRKINEQDFGVETSNISRVA----RALQLGVLDLSYNHFAFKLQKSGLS-------NLAKKLTNLIEIYLIDVDTSSAV   70 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~   70 (186)
                      +++++++++|.+.+.-..+++    .-++|+..++++-.  .++....++       +.+-+++.|+.++++.|.+....
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567889999988766555554    45888888888876  333333333       34456899999999999988766


Q ss_pred             ccc----cCCCCCCCeEeeccccccccccC-CC---------C-CCCCCcccEEEccCCcCCCCCCcc-----cCCCCCC
Q 038090           71 SPT----LTNLSSLIYLSISECSSQDLFGY-LP---------K-SQKGSLLEDLRLSFTKFLGKIPPS-----LGNLTNL  130 (186)
Q Consensus        71 ~~~----~~~l~~L~~L~l~~~~l~~~~~~-~~---------~-~~~~~~L~~L~l~~~~~~~~~~~~-----~~~l~~L  130 (186)
                      |+.    +++-+.|.+|.+++|.+..+.+. +-         . ...-+.|+.+..++|++. ..+..     +..-.+|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence            654    55678899999999987644331 11         1 334577899999998876 44432     2333689


Q ss_pred             CEEEcCCCcCCCCCc-----hhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          131 EDRYLSDNGFSGELP-----TSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       131 ~~L~L~~n~~~~~~~-----~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      +.+.+..|.+.-...     ..+..+.+|++||+..|-++-.....++..++.+
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence            999999998874322     2346789999999999999844344445555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.32  E-value=1.5e-07  Score=75.00  Aligned_cols=129  Identities=27%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCC
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQK  102 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  102 (186)
                      .+..++.+.+..|.      ...+...+..+.+|..+++.+|.+.+. ...+..+++|++|++++|.++.+.+    +..
T Consensus        70 ~l~~l~~l~l~~n~------i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~----l~~  138 (414)
T KOG0531|consen   70 SLTSLKELNLRQNL------IAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG----LST  138 (414)
T ss_pred             HhHhHHhhccchhh------hhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc----hhh
Confidence            34444445555554      222333345556666666666655532 2225556666666666664332211    344


Q ss_pred             CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEeccCCccc
Q 038090          103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~  165 (186)
                      ++.|+.|++.+|.+.. + ..+..++.|+.++++.|.+. .+... ...+.+++.+.+.+|.+.
T Consensus       139 l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  139 LTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            4446666666666542 1 22333556666666666655 32221 345555666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.30  E-value=3.9e-07  Score=78.37  Aligned_cols=148  Identities=24%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL   83 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   83 (186)
                      |++.+.++.+......  ..++.|+.|-+..|..-+   .....+.|..++.|+.||+++|.-.+.+|+.++.+.+|++|
T Consensus       526 rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             eEEEEeccchhhccCC--CCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4455555544322111  345578888888885101   23344557889999999999887667899999999999999


Q ss_pred             eeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC--CCCchhhhccCCCCEEecc
Q 038090           84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS--GELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~~~L~~l~l~  160 (186)
                      +++++.+    ..+|. +.++..|.+|++..+.....+|.....+.+|++|.+......  ...-..+..+.+|+.+...
T Consensus       601 ~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  601 DLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccCCCc----cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            9999843    36777 889999999999887765456666667899999998876532  1222334555666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.26  E-value=1.6e-08  Score=83.16  Aligned_cols=130  Identities=21%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCc
Q 038090           26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL  105 (186)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  105 (186)
                      +|.+.++++|.      -..+-..+.-++.|+.|++++|++.+. . .+..++.|++||+++|.++.+....+.  .+. 
T Consensus       165 ~L~~a~fsyN~------L~~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc~-  233 (1096)
T KOG1859|consen  165 KLATASFSYNR------LVLMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMV--GCK-  233 (1096)
T ss_pred             hHhhhhcchhh------HHhHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchh--hhh-
Confidence            45666777777      234455677778999999999998853 3 788999999999999977654433222  333 


Q ss_pred             ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCC
Q 038090          106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      |+.|.+.+|-+.  .-..+.++++|+.||++.|-+.+.-. ..+..+.+|+.|.+.+|++. ..|
T Consensus       234 L~~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p  295 (1096)
T KOG1859|consen  234 LQLLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP  295 (1096)
T ss_pred             heeeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence            888889888775  23457788999999999998884211 23567788999999999985 444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=1e-07  Score=75.93  Aligned_cols=108  Identities=25%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             HHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCC
Q 038090           21 VARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS  100 (186)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  100 (186)
                      +..+++++.+++.+|.      ...+...+..+.+|+.|++++|.+++.  ..+..++.|+.|++++|.+..+.    .+
T Consensus        91 l~~~~~l~~l~l~~n~------i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~----~~  158 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK------IEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS----GL  158 (414)
T ss_pred             cccccceeeeeccccc------hhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc----CC
Confidence            5567777777777777      234443356677777777777776643  34555566777777777544322    24


Q ss_pred             CCCCcccEEEccCCcCCCCCCcc-cCCCCCCCEEEcCCCcCC
Q 038090          101 QKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~  141 (186)
                      ..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus       159 ~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            446667777777777653222 1 345566666666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.8e-08  Score=74.09  Aligned_cols=171  Identities=21%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             ccceecccccccCc-ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCC-cccccCCCCC
Q 038090            3 QRKINEQDFGVETS-NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSA-VSPTLTNLSS   79 (186)
Q Consensus         3 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~   79 (186)
                      |+.+|++...++.- ....+..|++|+.|.+.++.  +   ...+...+.+-.+|+.++++.+. ++.. ..-.+..+..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~--L---dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR--L---DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccc--c---CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            34556665555422 23345677777777777777  4   56666667777777788877763 2211 1123566777


Q ss_pred             CCeEeeccccccccccCCCC-CC-CCCcccEEEccCCcCC---CCCCcccCCCCCCCEEEcCCCcC-CCCCchhhhccCC
Q 038090           80 LIYLSISECSSQDLFGYLPK-SQ-KGSLLEDLRLSFTKFL---GKIPPSLGNLTNLEDRYLSDNGF-SGELPTSLGKLNS  153 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~-~~-~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~~~  153 (186)
                      |..|++++|.+..-.  +.- +. --.++..|+++++.-.   ..+..-...+++|.+|||+.|.- +.....++.+++.
T Consensus       262 L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             HhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            888888887543211  111 11 1245677777765421   11222234678999999998644 3334455778899


Q ss_pred             CCEEeccCCcccccCChhH--HHhCCCCCCC
Q 038090          154 LKTFDISSCNILGKIPTSL--LIRLPPSVAL  182 (186)
Q Consensus       154 L~~l~l~~n~~~~~~p~~~--~~~l~~~~~l  182 (186)
                      |+++.++-|..  -+|..+  .+..|.+..|
T Consensus       340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  340 LQHLSLSRCYD--IIPETLLELNSKPSLVYL  368 (419)
T ss_pred             heeeehhhhcC--CChHHeeeeccCcceEEE
Confidence            99999887754  234433  2345555433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.18  E-value=1.2e-06  Score=73.60  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=99.5

Q ss_pred             Cccceeccccc-ccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCC
Q 038090            2 SQRKINEQDFG-VETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~   79 (186)
                      +|+.|++++.. +...++..++ .++.|+.|.+.+-.+.    .+.+......+++|..||+++++++..  .+++.+++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            57889998873 4456666776 6899999999998853    455777788999999999999998854  68889999


Q ss_pred             CCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCC--C----cccCCCCCCCEEEcCCCcCCCC
Q 038090           80 LIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI--P----PSLGNLTNLEDRYLSDNGFSGE  143 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~L~~n~~~~~  143 (186)
                      |+.|.+.+=.+.. ...+-++-.+++|+.||+++.......  .    ..-..++.|+.||.++..+...
T Consensus       197 Lq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  197 LQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            9999887764322 122223668999999999987654221  1    1223478999999998766643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=3.4e-06  Score=45.19  Aligned_cols=37  Identities=46%  Similarity=0.618  Sum_probs=28.5

Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      ++|+.|++++|++. .+|..++++++|++|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888887 56767888888888888888887

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=2.3e-06  Score=64.02  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=23.3

Q ss_pred             CCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccc
Q 038090          128 TNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILG  166 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~  166 (186)
                      +.+-.|+|+.+++. .+.  +++..+++|+-+.++++++.+
T Consensus       224 p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             Ccchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccc
Confidence            34445666666655 332  345667777778888777764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=5e-05  Score=59.93  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC   88 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (186)
                      .|.+++.|++++|.      ...+|.   --.+|++|.+++|.-....|+.+.  .+|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCD------IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCC------CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            45666666766665      233331   113466666665443333443331  35666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=1.7e-05  Score=56.22  Aligned_cols=109  Identities=23%  Similarity=0.116  Sum_probs=75.9

Q ss_pred             hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCC
Q 038090           24 ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG  103 (186)
Q Consensus        24 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  103 (186)
                      ......+||++|+  +    ... ..|..++.|.+|.+.+|.+....|..-.-+++|+.|.+.+|.+..+ +.+..+..+
T Consensus        41 ~d~~d~iDLtdNd--l----~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~  112 (233)
T KOG1644|consen   41 LDQFDAIDLTDND--L----RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASC  112 (233)
T ss_pred             ccccceecccccc--h----hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccC
Confidence            4566778999998  3    222 2356778899999999998865454334466799999999876544 333336788


Q ss_pred             CcccEEEccCCcCCCCCC---cccCCCCCCCEEEcCCCcC
Q 038090          104 SLLEDLRLSFTKFLGKIP---PSLGNLTNLEDRYLSDNGF  140 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~  140 (186)
                      +.|+.|.+-+|.+...--   ..+..+++|+.||+.+-..
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            889999988888764322   3456778999998776433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.79  E-value=3e-05  Score=56.84  Aligned_cols=110  Identities=25%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             hhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCccc
Q 038090           46 LSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPSL  124 (186)
Q Consensus        46 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~  124 (186)
                      +......+..|+.+.+.++.+++  -..+..+++|++|.++.|..+-..+..+....+++|+.+++++|.+... .-..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            44444455667777777766653  2355567777777777773322222211134447777777777776521 11223


Q ss_pred             CCCCCCCEEEcCCCcCCCCCc----hhhhccCCCCEEe
Q 038090          125 GNLTNLEDRYLSDNGFSGELP----TSLGKLNSLKTFD  158 (186)
Q Consensus       125 ~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~l~  158 (186)
                      ..+.+|..|++.+|.... +-    ..|.-+++|++++
T Consensus       113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence            455666777777776653 21    1234455666555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.77  E-value=3.7e-05  Score=54.56  Aligned_cols=102  Identities=24%  Similarity=0.153  Sum_probs=55.1

Q ss_pred             CccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCC--cccCCCCCCC
Q 038090           54 TNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIP--PSLGNLTNLE  131 (186)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~  131 (186)
                      .+...+++++|.+..  -..|..++.|.+|.+++|++..+...+  -...+++..|.+.+|.+. .+.  ..+..|+.|+
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence            355566666665542  235566666777777777554333322  234455666666666654 221  2344566677


Q ss_pred             EEEcCCCcCCCC---CchhhhccCCCCEEecc
Q 038090          132 DRYLSDNGFSGE---LPTSLGKLNSLKTFDIS  160 (186)
Q Consensus       132 ~L~L~~n~~~~~---~~~~~~~~~~L~~l~l~  160 (186)
                      +|.+-+|.++..   --.-+-.+++|++||++
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            777666666521   01113456667777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00014  Score=57.50  Aligned_cols=70  Identities=13%  Similarity=0.093  Sum_probs=43.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      .++.|++++|.+... | .  -..+|+.|.+++|.  -   ...+|..+  ..+|+.|.+++|.....+|.      +|+
T Consensus        53 ~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~--n---LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         53 ASGRLYIKDCDIESL-P-V--LPNELTEITIENCN--N---LTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             CCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCC--C---cccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            467899999976643 2 1  23469999999876  2   23344433  25788999998832223443      355


Q ss_pred             eEeeccc
Q 038090           82 YLSISEC   88 (186)
Q Consensus        82 ~L~l~~~   88 (186)
                      .|++..+
T Consensus       116 ~L~L~~n  122 (426)
T PRK15386        116 SLEIKGS  122 (426)
T ss_pred             eEEeCCC
Confidence            5555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=3.9e-05  Score=57.63  Aligned_cols=170  Identities=14%  Similarity=0.129  Sum_probs=91.1

Q ss_pred             eecccccccCc-ChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090            6 INEQDFGVETS-NISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL   83 (186)
Q Consensus         6 L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   83 (186)
                      +.+.++.+... ....|+ .+++++++|+.+|.++-   +..+...+.+++.|++|+++.|.+...+...-....+|+.+
T Consensus        50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             heecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            34444544322 233443 67888888888888433   45566677788888888888888775433222456678888


Q ss_pred             eeccccccccccCCCC-CCCCCcccEEEccCCcCCCC--CCccc---------------------------CCCCCCCEE
Q 038090           84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK--IPPSL---------------------------GNLTNLEDR  133 (186)
Q Consensus        84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~---------------------------~~l~~L~~L  133 (186)
                      -+.+..+.  ..++.. +..++.++.+-++.|.+.+.  .....                           ..++++..+
T Consensus       127 VLNgT~L~--w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  127 VLNGTGLS--WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEcCCCCC--hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            77776432  111222 44455555555555532110  00000                           112445555


Q ss_pred             EcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCCh-hHHHhCCCCCC
Q 038090          134 YLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPT-SLLIRLPPSVA  181 (186)
Q Consensus       134 ~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~~l~~~~~  181 (186)
                      -+..|.+.+.-. +++...+++.-|+++.|++- ++-. .-.+++|++.+
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~d  253 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVD  253 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhhe
Confidence            555555543222 23455667777777777773 4332 12335565543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.55  E-value=4.9e-05  Score=55.77  Aligned_cols=110  Identities=22%  Similarity=0.266  Sum_probs=72.8

Q ss_pred             cccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCC--cCCCCCCcccCCCCCCCEEEcCCCcCCC-CCch
Q 038090           70 VSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFT--KFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPT  146 (186)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~  146 (186)
                      +....-.+..|+.+.+.+..++.+..    +-.+++|+.|.++.|  .+.+.++....++++|+++++++|+++. .-..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence            44455566778888877775544322    446678888889888  5555555555567899999999998883 1112


Q ss_pred             hhhccCCCCEEeccCCcccccCC---hhHHHhCCCCCCCCC
Q 038090          147 SLGKLNSLKTFDISSCNILGKIP---TSLLIRLPPSVALSS  184 (186)
Q Consensus       147 ~~~~~~~L~~l~l~~n~~~~~~p---~~~~~~l~~~~~l~~  184 (186)
                      .+..+.+|..|++.+|..+ .+-   ..++..+|++..+++
T Consensus       111 pl~~l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccc
Confidence            3567788889999888776 332   244556677666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.41  E-value=0.00042  Score=45.81  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=40.3

Q ss_pred             hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC
Q 038090           20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK   99 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~   99 (186)
                      +|..+.+|+.+.+...-      ..--...|.++.+++.+.+..+ +.......|..+.+++.+.+..+ +..+...  .
T Consensus         7 ~F~~~~~l~~i~~~~~~------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~--~   76 (129)
T PF13306_consen    7 AFYNCSNLESITFPNTI------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDN--A   76 (129)
T ss_dssp             TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TT--T
T ss_pred             HHhCCCCCCEEEECCCe------eEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccc--c
Confidence            45566666666665432      1112223555556666666553 33333345556656666666432 1111110  1


Q ss_pred             CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCC
Q 038090          100 SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSD  137 (186)
Q Consensus       100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~  137 (186)
                      +..+++++.+++..+ +.......+..+ +++.+.+..
T Consensus        77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            444555555555432 221222334443 555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.29  E-value=0.00021  Score=55.89  Aligned_cols=175  Identities=21%  Similarity=0.195  Sum_probs=110.4

Q ss_pred             ccceeccccc-ccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-cccc-CCCC
Q 038090            3 QRKINEQDFG-VETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTL-TNLS   78 (186)
Q Consensus         3 L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~~l~   78 (186)
                      +.++++++|. ++....-.+ ..+.+|+.++.+.+..   ++...+...-.+..+|+.+.+..|+.-+.. ...+ .+++
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~---~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD---ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC---CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            3467777874 333332233 3789999999999882   212333333346799999999988632211 1222 3567


Q ss_pred             CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcC-CCC----CCcccCCCCCCCEEEcCCCcCCCC-Cchhhhcc
Q 038090           79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKF-LGK----IPPSLGNLTNLEDRYLSDNGFSGE-LPTSLGKL  151 (186)
Q Consensus        79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~----~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~  151 (186)
                      .|+.+++.++.... ...+-. -.+++.|+.+.++.+.. ++.    +...-..+..+..+.|+++..... .-+.+..+
T Consensus       347 ~Le~l~~e~~~~~~-d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  347 HLERLDLEECGLIT-DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhcccccceeh-hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            89999998885421 222333 46788899999887753 332    112223457788999999877632 23456788


Q ss_pred             CCCCEEeccCC-cccccCChhHHHhCCCCCC
Q 038090          152 NSLKTFDISSC-NILGKIPTSLLIRLPPSVA  181 (186)
Q Consensus       152 ~~L~~l~l~~n-~~~~~~p~~~~~~l~~~~~  181 (186)
                      ++|+.+++-.+ .++.+--+.+..++|+...
T Consensus       426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v  456 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTKEAISRFATHLPNIKV  456 (483)
T ss_pred             cccceeeeechhhhhhhhhHHHHhhCcccee
Confidence            99999999888 4554544566667787544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.09  E-value=0.0018  Score=42.73  Aligned_cols=120  Identities=19%  Similarity=0.191  Sum_probs=62.7

Q ss_pred             HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090           49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLT  128 (186)
Q Consensus        49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  128 (186)
                      .|.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ +..+...  .+..+..++.+.+.. .+.......|..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee--eeecccccccccccc-cccccccccccccc
Confidence            356778899999875 445445567889989999998775 3222211  167777899999965 33323345677789


Q ss_pred             CCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHHhCCC
Q 038090          129 NLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP  178 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~  178 (186)
                      +++.+.+..+ +. .++ ..+..+ +++.+.+.. .+. .++...+.+.+.
T Consensus        82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~  127 (129)
T PF13306_consen   82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTK  127 (129)
T ss_dssp             TECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-S-S----GGG----
T ss_pred             cccccccCcc-cc-EEchhhhcCC-CceEEEECC-Ccc-EECCcccccccc
Confidence            9999999775 44 333 346666 899998875 555 666666555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=3.3e-05  Score=57.49  Aligned_cols=100  Identities=24%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCC-CcccCCCCCCC
Q 038090           53 LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI-PPSLGNLTNLE  131 (186)
Q Consensus        53 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~  131 (186)
                      +.+.+.|+.++|.+.++  ....+|+.|++|.++-|.+...    ..+..|++|++|++-.|.|.+.- -..+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            45677778888876642  3455677788888877743221    11567777777777777665221 12344566666


Q ss_pred             EEEcCCCcCCCCCch-----hhhccCCCCEEe
Q 038090          132 DRYLSDNGFSGELPT-----SLGKLNSLKTFD  158 (186)
Q Consensus       132 ~L~L~~n~~~~~~~~-----~~~~~~~L~~l~  158 (186)
                      .|-|..|.=.+.-+.     -+-.+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666544432211     133456666555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.00042  Score=51.79  Aligned_cols=76  Identities=33%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc--cccCCCCCC
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS--PTLTNLSSL   80 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L   80 (186)
                      .++|++=+|++..+  ....+|+.|+.|.||-|.  +    ..+. .+..+..|++|+++.|.+.+ +.  ..+.++++|
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNk--I----ssL~-pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsL   90 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNK--I----SSLA-PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSL   90 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccc--c----ccch-hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchh
Confidence            35666666665542  333456666666666665  2    1111 23444555555555554442 22  234445555


Q ss_pred             CeEeeccc
Q 038090           81 IYLSISEC   88 (186)
Q Consensus        81 ~~L~l~~~   88 (186)
                      +.|++..|
T Consensus        91 r~LWL~EN   98 (388)
T KOG2123|consen   91 RTLWLDEN   98 (388)
T ss_pred             hhHhhccC
Confidence            55555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.00049  Score=55.56  Aligned_cols=175  Identities=21%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             Cccceeccccc-ccCcC-hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccC-CC
Q 038090            2 SQRKINEQDFG-VETSN-ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLT-NL   77 (186)
Q Consensus         2 ~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l   77 (186)
                      .|+++.+..|. +.... ......+++|+.|+++++.................+++|+.++++++. ++...-..+. .+
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            35666777763 33222 234457888888888873100100011122344556888888888876 4433323333 26


Q ss_pred             CCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCC--CCcccCCCCCCCEEEcCCCc----CC--------
Q 038090           78 SSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGK--IPPSLGNLTNLEDRYLSDNG----FS--------  141 (186)
Q Consensus        78 ~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~----~~--------  141 (186)
                      ++|++|.+.++.  .+.. .+.. ...+++|+.|+++++.....  +......+++++.+.+....    ++        
T Consensus       269 ~~L~~L~l~~c~--~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  269 PNLETLSLSNCS--NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             CCcceEccCCCC--ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            788888866663  1122 1222 45677788888887654311  11112234444443322221    11        


Q ss_pred             --C--CC-chhhhccCCCCEEeccCCcccccCC-hhHHHhCCCC
Q 038090          142 --G--EL-PTSLGKLNSLKTFDISSCNILGKIP-TSLLIRLPPS  179 (186)
Q Consensus       142 --~--~~-~~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~~l~~~  179 (186)
                        +  .. ......++.++.+.+.++... ... ..+.+.+|.+
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCccc
Confidence              0  11 122457778888888877744 333 4555556544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.33  E-value=0.0014  Score=29.36  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=14.8

Q ss_pred             CCCEEeccCCcccccCChhHH
Q 038090          153 SLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       153 ~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      +|++|++++|+++ .+|.++.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4678888888887 7777743

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.08  E-value=0.0026  Score=51.37  Aligned_cols=112  Identities=21%  Similarity=0.150  Sum_probs=53.4

Q ss_pred             CCccceEEeccccCCCC--cccccCCCCCCCeEeeccc-ccccccc-CCCC-CCCCCcccEEEccCCc-CCCCCCcccC-
Q 038090           53 LTNLIEIYLIDVDTSSA--VSPTLTNLSSLIYLSISEC-SSQDLFG-YLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLG-  125 (186)
Q Consensus        53 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~l~~~~~-~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~-  125 (186)
                      .+.|+.+.+.++.....  .......++.|+.|+++++ ....... .... ...+.+++.++++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46666666665533322  1233445566666666552 1000000 0111 3344556666666655 4333222222 


Q ss_pred             CCCCCCEEEcCCCc-CCCCCc-hhhhccCCCCEEeccCCcc
Q 038090          126 NLTNLEDRYLSDNG-FSGELP-TSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       126 ~l~~L~~L~L~~n~-~~~~~~-~~~~~~~~L~~l~l~~n~~  164 (186)
                      .+++|++|.+.+|. +++..- .....+++|++++++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25667777766665 343222 2234566677777776643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.02  E-value=0.0042  Score=25.89  Aligned_cols=16  Identities=31%  Similarity=0.692  Sum_probs=7.8

Q ss_pred             CCCEEeccCCcccccCC
Q 038090          153 SLKTFDISSCNILGKIP  169 (186)
Q Consensus       153 ~L~~l~l~~n~~~~~~p  169 (186)
                      +|+.|++++|+++ ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            5667777777665 544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.83  E-value=0.0048  Score=27.55  Aligned_cols=19  Identities=11%  Similarity=0.197  Sum_probs=9.4

Q ss_pred             cceEEeccccCCCCcccccC
Q 038090           56 LIEIYLIDVDTSSAVSPTLT   75 (186)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~   75 (186)
                      |+.|++++|.++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3443343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.64  E-value=0.011  Score=27.40  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=16.4

Q ss_pred             cCCCCEEeccCCcccccCChhHH
Q 038090          151 LNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       151 ~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      +++|++|++++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356788888888887 7777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.64  E-value=0.011  Score=27.40  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=16.4

Q ss_pred             cCCCCEEeccCCcccccCChhHH
Q 038090          151 LNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       151 ~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      +++|++|++++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356788888888887 7777665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.30  E-value=0.0088  Score=27.21  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=13.3

Q ss_pred             cCCCCEEeccCCcccccCChhHH
Q 038090          151 LNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       151 ~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      +++|++|++++|.++++....++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            35677778887777765555543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.44  E-value=0.00038  Score=56.48  Aligned_cols=169  Identities=21%  Similarity=0.121  Sum_probs=84.1

Q ss_pred             ccceecccccccCcChhhH----HhhcccCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCCc----ccc
Q 038090            3 QRKINEQDFGVETSNISRV----ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSAV----SPT   73 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~----~~~   73 (186)
                      +..+++.+|.+.......+    ..+..|+.|++++|.+.. .....+.+.+... ..+++|++..|.++...    .+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            4567777777665544444    456788888888888310 0001122222222 45666777777666432    234


Q ss_pred             cCCCCCCCeEeecccccccccc-CCCC-CC----CCCcccEEEccCCcCCCCC----CcccCCCCC-CCEEEcCCCcCCC
Q 038090           74 LTNLSSLIYLSISECSSQDLFG-YLPK-SQ----KGSLLEDLRLSFTKFLGKI----PPSLGNLTN-LEDRYLSDNGFSG  142 (186)
Q Consensus        74 ~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~----~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~L~~n~~~~  142 (186)
                      +.....++.++++.|.+..... .++. +.    ...+++++.+.+|.++...    ...+...+. +..+++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            4455667777777775431100 1111 22    3556677777766654211    112222233 4445566665553


Q ss_pred             CC----chhhhcc-CCCCEEeccCCcccccCChhH
Q 038090          143 EL----PTSLGKL-NSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       143 ~~----~~~~~~~-~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      ..    .+.+..+ ..+++++++.|.+...-...+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            21    1223333 445666666666654433333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.26  E-value=0.019  Score=45.43  Aligned_cols=155  Identities=19%  Similarity=0.153  Sum_probs=97.1

Q ss_pred             Cccceeccccc-ccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--cccccCCC
Q 038090            2 SQRKINEQDFG-VETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTLTNL   77 (186)
Q Consensus         2 ~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l   77 (186)
                      .|+.++.++|. +......++ .++.+|+++.++.|.-   .....+...=.+.+.|+.+++..+.....  +...-..+
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch---hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45677778774 333333344 4789999999999982   11333333334578999999988865532  23334567


Q ss_pred             CCCCeEeeccccccccccC--CCC-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCC--Cchhhhcc
Q 038090           78 SSLIYLSISECSSQDLFGY--LPK-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGE--LPTSLGKL  151 (186)
Q Consensus        78 ~~L~~L~l~~~~l~~~~~~--~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~  151 (186)
                      +.|+++.+++|.+..-.+.  +.. -..+..+..+.++++... ...-..+..+++|+.+++-.++-...  +...-.++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            8899999998854322211  111 245567888888887743 33445567788999999888755422  22334577


Q ss_pred             CCCCEEec
Q 038090          152 NSLKTFDI  159 (186)
Q Consensus       152 ~~L~~l~l  159 (186)
                      +++++..+
T Consensus       452 p~i~v~a~  459 (483)
T KOG4341|consen  452 PNIKVHAY  459 (483)
T ss_pred             ccceehhh
Confidence            87776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.0093  Score=42.58  Aligned_cols=81  Identities=17%  Similarity=0.051  Sum_probs=41.0

Q ss_pred             ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-ccccC-CCCCCCeEeeccccccccccCCCC-CCC
Q 038090           26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTLT-NLSSLIYLSISECSSQDLFGYLPK-SQK  102 (186)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~-~~~  102 (186)
                      .++.+|=+++.  +   ...-.+.+..++.++.|.+.+|.--+.. -+.++ -.++|+.|++++|.  .+++.-.. +..
T Consensus       102 ~IeaVDAsds~--I---~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~--rIT~~GL~~L~~  174 (221)
T KOG3864|consen  102 KIEAVDASDSS--I---MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP--RITDGGLACLLK  174 (221)
T ss_pred             eEEEEecCCch--H---HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC--eechhHHHHHHH
Confidence            34555555555  3   3333344555666666666666433211 12222 24567777777764  33332223 556


Q ss_pred             CCcccEEEccC
Q 038090          103 GSLLEDLRLSF  113 (186)
Q Consensus       103 ~~~L~~L~l~~  113 (186)
                      +++|+.|.+.+
T Consensus       175 lknLr~L~l~~  185 (221)
T KOG3864|consen  175 LKNLRRLHLYD  185 (221)
T ss_pred             hhhhHHHHhcC
Confidence            66666665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.93  E-value=0.00054  Score=55.58  Aligned_cols=168  Identities=20%  Similarity=0.158  Sum_probs=101.6

Q ss_pred             CccceecccccccCcChhhHHh-h----cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC----Cccc
Q 038090            2 SQRKINEQDFGVETSNISRVAR-A----LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS----AVSP   72 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~-l----~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~   72 (186)
                      +|..|+++++++.......++. +    ..++.|++..|.+.. .-...+...+.....++.++++.|.+..    ..+.
T Consensus       116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~-~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS-EGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc-cchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            4667888888877555555542 1    445667888877321 0012244455556778888888887641    1122


Q ss_pred             ccC----CCCCCCeEeeccccccccccCC-CC-CCCCCc-ccEEEccCCcCCCC----CCcccCCC-CCCCEEEcCCCcC
Q 038090           73 TLT----NLSSLIYLSISECSSQDLFGYL-PK-SQKGSL-LEDLRLSFTKFLGK----IPPSLGNL-TNLEDRYLSDNGF  140 (186)
Q Consensus        73 ~~~----~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~L~~n~~  140 (186)
                      .+.    ...++++|.+++|.++...-.. .. +...++ +..++++.|.+.+.    ....+..+ +.++++++..|.+
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI  274 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence            333    4667888888888554111111 11 333444 56688888887644    22334445 6778999999988


Q ss_pred             CCCC----chhhhccCCCCEEeccCCcccccCCh
Q 038090          141 SGEL----PTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus       141 ~~~~----~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      ....    ...+..++.++++.+++|.+.+..-.
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~  308 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVE  308 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCccccHHHH
Confidence            8543    33456677899999999988754333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.19  E-value=0.0034  Score=45.95  Aligned_cols=88  Identities=16%  Similarity=0.087  Sum_probs=62.1

Q ss_pred             ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090           73 TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN  152 (186)
Q Consensus        73 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (186)
                      .+..+...+.||++.|++.+.-..   ++.++.+..++++.|.+. ..|..++....++++++.+|..+ ..|.++++.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n---~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKN---FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccc---hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            344556677788877754322111   556677788888877776 66777777777777888777777 7777788888


Q ss_pred             CCCEEeccCCccc
Q 038090          153 SLKTFDISSCNIL  165 (186)
Q Consensus       153 ~L~~l~l~~n~~~  165 (186)
                      .+++++.-.|.++
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            8888888888776

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.64  E-value=0.17  Score=23.54  Aligned_cols=18  Identities=28%  Similarity=0.549  Sum_probs=14.6

Q ss_pred             CCCCEEeccCCcccccCCh
Q 038090          152 NSLKTFDISSCNILGKIPT  170 (186)
Q Consensus       152 ~~L~~l~l~~n~~~~~~p~  170 (186)
                      ++|+.|++++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            46888899999987 7775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.01  E-value=0.019  Score=42.17  Aligned_cols=77  Identities=13%  Similarity=-0.049  Sum_probs=53.9

Q ss_pred             eecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEee
Q 038090            6 INEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI   85 (186)
Q Consensus         6 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   85 (186)
                      ||++.+... ..-..|+.++.+..||++.|.      ....|..+++.+.++.++.+.|..+ ..|.+++..+.+++++.
T Consensus        47 ld~~s~r~v-n~~~n~s~~t~~~rl~~sknq------~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   47 LDLSSNRLV-NLGKNFSILTRLVRLDLSKNQ------IKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ehhhhhHHH-hhccchHHHHHHHHHhccHhh------HhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            455554432 223445666667777777776      4667778888888888888888776 46788888888888888


Q ss_pred             ccccc
Q 038090           86 SECSS   90 (186)
Q Consensus        86 ~~~~l   90 (186)
                      -.+.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            77743

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.38  E-value=0.27  Score=23.22  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=11.1

Q ss_pred             CCCCEEeccCCcccccCChhH
Q 038090          152 NSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       152 ~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      ++|++|++++|.+..+--..+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            356666666666653333333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.78  E-value=0.072  Score=38.19  Aligned_cols=82  Identities=23%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             ccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCC
Q 038090           55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLE  131 (186)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~  131 (186)
                      .++.++-+++.+..+.-+-+..+++++.|.+.+|.  .+.. .+.. -+-.++|+.|++++|. |++..-..+.++++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck--~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK--YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc--chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            46677777776665444556677777777777773  2211 1111 2344678888888765 5555556667778888


Q ss_pred             EEEcCCC
Q 038090          132 DRYLSDN  138 (186)
Q Consensus       132 ~L~L~~n  138 (186)
                      .|++.+-
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            7776654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.48  E-value=0.99  Score=20.96  Aligned_cols=14  Identities=29%  Similarity=0.460  Sum_probs=9.3

Q ss_pred             CCCCEEeccCCccc
Q 038090          152 NSLKTFDISSCNIL  165 (186)
Q Consensus       152 ~~L~~l~l~~n~~~  165 (186)
                      .+|+.|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45667777777665

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.87  E-value=1.2  Score=36.90  Aligned_cols=82  Identities=15%  Similarity=0.090  Sum_probs=47.2

Q ss_pred             CcccEEEccCCcCCCC--CCcccCCCCCCCEEEcCCCcCCCCCchhhhc--cCCCCEEeccCCcccccCC------hhHH
Q 038090          104 SLLEDLRLSFTKFLGK--IPPSLGNLTNLEDRYLSDNGFSGELPTSLGK--LNSLKTFDISSCNILGKIP------TSLL  173 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~~~L~~l~l~~n~~~~~~p------~~~~  173 (186)
                      +.+..+.+++|++...  +..--...++|..|+|++|...-.-..++.+  ...|++|-+.+|+++...-      .++.
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~  297 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR  297 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence            4566777777776532  1122235578888888888222111222332  2357888888888863221      2555


Q ss_pred             HhCCCCCCCCCC
Q 038090          174 IRLPPSVALSST  185 (186)
Q Consensus       174 ~~l~~~~~l~~~  185 (186)
                      +..|.+..|++.
T Consensus       298 ~~FPKL~~LDG~  309 (585)
T KOG3763|consen  298 ELFPKLLRLDGV  309 (585)
T ss_pred             HhcchheeecCc
Confidence            567777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-09

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 60/198 (30%)
Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKL-----------------------TNLIEIYLID 63
           L VLDLS+N F+ +L +S L+NL+  L                         L E+YL +
Sbjct: 342 LKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 64  VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL------------------ 105
              +  + PTL+N S L+ L +S       F YL  +   SL                  
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 106 -----------LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL 154
                      LE L L F    G+IP  L N TNL    LS+N  +GE+P  +G+L +L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 155 KTFDISSCNILGKIPTSL 172
               +S+ +  G IP  L
Sbjct: 514 AILKLSNNSFSGNIPAEL 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 60/198 (30%)
Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKL-----------------------TNLIEIYLID 63
           L VLDLS+N F+ +L +S L+NL+  L                         L E+YL +
Sbjct: 345 LKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 64  VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL------------------ 105
              +  + PTL+N S L+ L +S       F YL  +   SL                  
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 106 -----------LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL 154
                      LE L L F    G+IP  L N TNL    LS+N  +GE+P  +G+L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 155 KTFDISSCNILGKIPTSL 172
               +S+ +  G IP  L
Sbjct: 517 AILKLSNNSFSGNIPAEL 534

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT---NLSSLIY 82
            L  L++S N   F  + SG   L     +L  + L     S A             L +
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKL----NSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 83  LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
           L+IS      + G +  S+  +L E L +S   F   IP  LG+ + L+   +S N  SG
Sbjct: 183 LAISGNK---ISGDVDVSRCVNL-EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
           +   ++     LK  +ISS   +G IP   L  L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  LD+S N+F+  +    L +     + L  + +     S   S  ++  + L  L+I
Sbjct: 201 NLEFLDVSSNNFSTGI--PFLGDC----SALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSL-GNLTNLEDRYLSDNGFSGEL 144
           S        G +P     SL + L L+  KF G+IP  L G    L    LS N F G +
Sbjct: 255 SSNQ---FVGPIPPLPLKSL-QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           P   G  + L++  +SS N  G++P   L+++ 
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  LDLS N+F+  +  +   N       L E+YL +   +  + PTL+N S L+ L +
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNP---KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

Query: 86  SECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
           S      L G +P S    S L DL+L      G+IP  L  +  LE   L  N  +GE+
Sbjct: 426 SFNY---LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSL 172
           P+ L    +L    +S+  + G+IP  +
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGL--SNLAKKLTNLIEIYLIDVDTSSAVSPTLTN--LSSLI 81
            L VLDLS+N F      SG    +L     +L+ + L   + S  + P L     ++L 
Sbjct: 344 GLKVLDLSFNEF------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 82  YLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
            L +         G +P +    S L  L LSF    G IP SLG+L+ L D  L  N  
Sbjct: 398 ELYLQNNG---FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            GE+P  L  + +L+T  +   ++ G+IP+ L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT-NLSSLIYLS 84
           +L +L++S N F   +           L +L  + L +   +  +   L+    +L  L 
Sbjct: 248 ELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 85  ISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNGFSG 142
           +S       +G +P      SLLE L LS   F G++P  +L  +  L+   LS N FSG
Sbjct: 301 LSGNH---FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 143 ELPTSLGKL-NSLKTFDISSCNILGKIPTSLLIRLPPS 179
           ELP SL  L  SL T D+SS N  G I  +L      +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 11/149 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSG-LSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
            L  L L  N F      +G +       + L+ ++L     S  +  +L +LS L  L 
Sbjct: 395 TLQELYLQNNGF------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 85  ISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143
           +       L G +P+       LE L L F    G+IP  L N TNL    LS+N  +GE
Sbjct: 449 LWLNM---LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           +P  +G+L +L    +S+ +  G IP  L
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%)

Query: 26  QLGVLDLSYNHFAFKLQKSGL--SNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83
           +L  L LS+N+       SG   S+L   L+ L ++ L        +   L  + +L  L
Sbjct: 419 ELVSLHLSFNYL------SGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 84  SISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
            +       L G +P      + L  + LS  +  G+IP  +G L NL    LS+N FSG
Sbjct: 472 ILDFND---LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            +P  LG   SL   D+++    G IP ++
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP--TLTNLSSLIYLS 84
           L  L LS +H    +             +L  + L     S  V+   +L + S L +L+
Sbjct: 79  LESLFLSNSHINGSVSGFK------CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSL---GNLTNLEDRYLSDNGFS 141
           +S  +     G +    K + LE L LS     G              L+   +S N  S
Sbjct: 133 VSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIP 169
           G++   + +  +L+  D+SS N    IP
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
                  + N   F+      S    +L+      +         SPT  N  S+++L +
Sbjct: 583 MKKECHGAGNLLEFQ---GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 86  SECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
           S      L GY+PK       L  L L      G IP  +G+L  L    LS N   G +
Sbjct: 640 S---YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTS 171
           P ++  L  L   D+S+ N+ G IP  
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 21/165 (12%)

Query: 26  QLGVLDLSYNHF------AFKLQKSGLS------NLAKKLTNLIEIYLIDVDT-----SS 68
            L  LDL+ N F      A   Q   ++           + N                  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 69  AVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNL 127
             S  L  LS+    +I+        G+   +      +  L +S+    G IP  +G++
Sbjct: 599 IRSEQLNRLSTRNPCNITSRV---YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
             L    L  N  SG +P  +G L  L   D+SS  + G+IP ++
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 66  TSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP--S 123
             SAVS +L +L+ L  L +S      + G +   +  + L  L LS     G +    S
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 124 LGNLTNLEDRYLSDNGFSGELPTSLG-KLNSLKTFDISSCNILGKIPTSLLI 174
           LG+ + L+   +S N        S G KLNSL+  D+S+ +I G      ++
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 76  NLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134
               +  + +S       F  +  S    + LE L LS +   G +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 135 LSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           LS N  SG + T  SLG  + LK  ++SS  +      S  ++L 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 17/150 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSG--LSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83
           +L  L L  N         G     L   +  L  + L   D +  +   L+N ++L ++
Sbjct: 443 KLRDLKLWLNML------EGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 84  SISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
           S+S      L G +PK   +   L  L+LS   F G IP  LG+  +L    L+ N F+G
Sbjct: 496 SLSNNR---LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            +P ++ K     +  I++  I GK    +
Sbjct: 553 TIPAAMFKQ----SGKIAANFIAGKRYVYI 578

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 67  SSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLG 125
              +  +L NL  L +L I   ++  L G +P +  K + L  L ++ T   G IP  L 
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 126 NLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL--LIRLPPSVALS 183
            +  L     S N  SG LP S+  L +L         I G IP S     +L  S+ +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 184 S 184
            
Sbjct: 183 R 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 4e-17
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGL--SNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI-Y 82
            L  LD SYN        SG    +++  L NL+ I       S A+  +  + S L   
Sbjct: 126 TLVTLDFSYNAL------SGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 83  LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
           ++IS      L G +P +     L  + LS     G      G+  N +  +L+ N  + 
Sbjct: 179 MTISRNR---LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           +L   +G   +L   D+ +  I G +P  L
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 8e-17
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 19  SRVARALQLGVLDLSYNHFAFKLQ-KSGLSNLAKKLTNLIEIYLIDVDT-SSAVSPTLTN 76
               +  ++  LDLS  +        S L+NL      L  +Y+  ++     + P +  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL----PYLNFLYIGGINNLVGPIPPAIAK 99

Query: 77  LSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134
           L+ L YL I+  +   + G +P      +  L  L  S+    G +PPS+ +L NL    
Sbjct: 100 LTQLHYLYITHTN---VSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 135 LSDNGFSGELPTSLGKLNSLKTF-DISSCNILGKIPTSL 172
              N  SG +P S G  + L T   IS   + GKIP + 
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 5e-10
 Identities = 26/137 (18%), Positives = 39/137 (28%), Gaps = 33/137 (24%)

Query: 25  LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
           L L  +DLS N                                   S    +  +   + 
Sbjct: 197 LNLAFVDLSRNML-----------------------------EGDASVLFGSDKNTQKIH 227

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
           +++ S   L   L K      L  L L   +  G +P  L  L  L    +S N   GE+
Sbjct: 228 LAKNS---LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 145 PTSLGKLNSLKTFDISS 161
           P   G L        ++
Sbjct: 285 PQG-GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 111 LSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE--LPTSLGKLNSLKTFDISSCNIL-GK 167
                +LG +  +      + +  LS         +P+SL  L  L    I   N L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 168 IPTSL 172
           IP ++
Sbjct: 93  IPPAI 97

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 8/158 (5%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
               DL  +      Q+  +   ++      +I  +  + +  VS  +  L+ L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 87  ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT 146
                               E+    + +          NL +L D  + +     +LPT
Sbjct: 215 NSP-------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 147 SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSS 184
            L  L  ++  +++    +         +      +  
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 29/189 (15%)

Query: 5   KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGL-SNLAKKLTNLIEIYL-- 61
           +I   D            + + +  ++LS N        S     L    + L  I L  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI------SKFPKELFSTGSPLSSINLMG 466

Query: 62  -----IDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS-QKGSL--LEDLRLSF 113
                I  ++    +    N   L  + +           L    +  +L  L  + LS+
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK----LTKLSDDFRATTLPYLVGIDLSY 522

Query: 114 TKFLGKIPPSLGNLTNLED------RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGK 167
                K P    N + L+       R    N    E P  +    SL    I S + + K
Sbjct: 523 NS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK 580

Query: 168 IPTSLLIRL 176
           +   +   +
Sbjct: 581 VNEKITPNI 589

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 21/173 (12%), Positives = 57/173 (32%), Gaps = 23/173 (13%)

Query: 26  QLGVLDLSYNHF-----AFKLQKSGLSNLAK---------KLTNLIEIYLIDVDTSSAVS 71
           +L    +  + F         +        +          L +L ++ + +    + + 
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 72  PTLTNLSSLIYLSISEC------SSQDLFGYLPKSQKGSLLEDLRLSFTKFL-GKIPPSL 124
             L  L  +  ++++          +D +  L  +  G  ++ + + +       +  SL
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 125 GNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             +  L       N   G+LP + G    L + +++  N + +IP +      
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY-NQITEIPANFCGFTE 377

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 11/154 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD----TSSAVSPTLTNLSSLI 81
            L  ++L  N    ++ K+ L +  +   N   +  ID+     T  +     T L  L+
Sbjct: 458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 82  YLSISECSSQDL---FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
            + +S  S              +   +         + L + P  +    +L    +  N
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
               ++   +    ++   DI     +    + +
Sbjct: 577 DIR-KVNEKI--TPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 16/166 (9%)

Query: 12  GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYL----IDVDTS 67
           GV  ++  RV        L L     + ++  + +  L    T L  + L      V+  
Sbjct: 74  GVSLNSNGRVTG------LSLEGFGASGRVPDA-IGQL----TELEVLALGSHGEKVNER 122

Query: 68  SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
                 ++   S           Q  F      +  S L    ++       I  S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
                     N  +  +  ++ +L  L+ F + +   + +      
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 44/198 (22%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTS----SAVS 71
             ++      ++ ++ + YN+      ++ L  +      L  +                
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM----KKLGMLEC-----LYNQLEGKL 346

Query: 72  PTLTNLSSLIYLSISECS----SQDLFGYLPK-----------------SQKGSL--LED 108
           P   +   L  L+++         +  G+  +                     S+  +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 109 LRLSFTKF-------LGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161
           +  S+ +           + P+     N+    LS+N  S          + L + ++  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 162 CNILGKIPTSLLIRLPPS 179
            N+L +IP + L     +
Sbjct: 467 -NMLTEIPKNSLKDENEN 483

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 10/111 (9%)

Query: 73  TLTNLSSLIYLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLG----KIPPSLGNL 127
           +L +   +  LS+         G +P +  + + LE L L             P  +   
Sbjct: 76  SLNSNGRVTGLSLEGFG---ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLN--SLKTFDISSCNILGKIPTSLLIRL 176
            + E +      +         + +   L    I+S      I  S  I L
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 123 SLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL 182
           SL +   +    L   G SG +P ++G+L  L+   + S              +  +++ 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 183 SS 184
             
Sbjct: 136 EQ 137

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 9/154 (5%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
           L + DL  +      +   +   ++      +I  +    +  +S  +  L+ L  +  +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA 456

Query: 87  ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT 146
                               ED    + K       S  NL +L D  L +     +LP 
Sbjct: 457 NSP-------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 147 SLGKLNSLKTFDISSCNILGKIP-TSLLIRLPPS 179
            L  L  L++ +I+    +      +   RL   
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 31/172 (18%)

Query: 23  RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYL-------IDVDTSSAVSPTLT 75
           + +    + LSYN       +   + L    + +  I L       I  ++         
Sbjct: 671 KGINASTVTLSYNEI-----QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 76  NLSSLIYLSISEC-----SSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNL 130
           N   L  + +        S       LP       L ++ +S+       P    N + L
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPY------LSNMDVSYNC-FSSFPTQPLNSSQL 778

Query: 131 ED------RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
           +       R    N    + PT +    SL    I S N + K+   L  +L
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS-NDIRKVDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 23/167 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNL-IEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
           +L VL    +      +  G   L   ++        +             NLS L+  +
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-- 142
           I+          + K  + SL +    + T  +  I  ++  LT L+  Y +++ F+   
Sbjct: 408 INRNPE---MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 143 -----------------ELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
                                S   L  L   ++ +C  + ++P  L
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 11/155 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD----TSSAVSPTLTNLSSLI 81
            +  + LS N     + ++ L        N   +  ID+     TS +     T L  L 
Sbjct: 698 PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 82  YLSISECSSQDL---FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
            + +S               + +   +         + L + P  +    +L    +  N
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173
               ++   L     L   DI+    +    TS+ 
Sbjct: 817 DIR-KVDEKL--TPQLYILDIADNPNISIDVTSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 33/160 (20%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L ++  + + F +        +         E              + +NL  L  + +
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----------EELSWSNLKDLTDVEL 498

Query: 86  SECSSQ----DLFGYLPKSQKGSLLEDLRLSFTKF---------LGKIPPSLGNLTNLED 132
             C +     D    LP+      L+ L ++  +            ++         ++ 
Sbjct: 499 YNCPNMTQLPDFLYDLPE------LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 133 RYLSDNGFSGELPTS--LGKLNSLKTFDISSCNILGKIPT 170
            Y+  N    E P S  L K+  L   D    N +  +  
Sbjct: 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVH-NKVRHLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 14/159 (8%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +LG+LD  +N          L         L ++ L                  +  L  
Sbjct: 574 KLGLLDCVHNKV------RHLEAFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLS---FTKFLGKIPPSLG--NLTNLEDRYLSDNGF 140
           S    + +           +   +  S          I  S+      N     LS N  
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGS-VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179
                      + + T  +S+ N++  IP + L     +
Sbjct: 686 QKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGN 723

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/72 (13%), Positives = 22/72 (30%)

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165
           +  L L+     G++P ++G LT L+      +  +        +  +    +     I 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 166 GKIPTSLLIRLP 177
                  L    
Sbjct: 385 MHYKKMFLDYDQ 396

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 26  QLGVLDLSYN----HFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81
           +L  L +            L  +  S   + L NL  + L      S +  ++ NL +L 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK 209

Query: 82  YLSISECSSQDL---FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
            L I       L     +LPK      LE+L L     L   PP  G    L+   L D 
Sbjct: 210 SLKIRNSPLSALGPAIHHLPK------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
                LP  + +L  L+  D+  C  L ++P+ +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 76  NLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
                + L +            P      L  L+ + +     L ++P ++     LE  
Sbjct: 79  TQPGRVALELRSVP----LPQFPDQA-FRLSHLQHMTIDAAG-LMELPDTMQQFAGLETL 132

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            L+ N     LP S+  LN L+   I +C  L ++P  L
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS--AVSPTLTNLSSLIYL 83
            L  L L +           + +L   + NL  +  + +  S   A+ P + +L  L  L
Sbjct: 184 NLQSLRLEWTG---------IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 84  SISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
            +  C++       P    G    L+ L L     L  +P  +  LT LE   L      
Sbjct: 235 DLRGCTA---LRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             LP+ + +L +     +   ++  ++     +  P
Sbjct: 291 SRLPSLIAQLPANCIILVPP-HLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 24/148 (16%)

Query: 41  LQKSGLSNLAKKLTNLIEIYLIDVDTSS----AVSPTLTNLSSLIYLSISECSSQDL--- 93
                L   A  L +  +   + ++  S            LS L +++I      +L   
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT 122

Query: 94  FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGK--- 150
                       LE L L+    L  +P S+ +L  L +  +       ELP  L     
Sbjct: 123 MQQFAG------LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 151 ------LNSLKTFDISSCNILGKIPTSL 172
                 L +L++  +     +  +P S+
Sbjct: 176 SGEHQGLVNLQSLRL-EWTGIRSLPASI 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 7/154 (4%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLA----KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81
            +  L+L  +     +  + L  +     + L  L  + + D D     S   T L +L 
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 82  YLSISE--CSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG 139
           YLS+S    S + L      S   S L  L L+  K       +   L +LE   L  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 140 FSGELP-TSLGKLNSLKTFDISSCNILGKIPTSL 172
              EL       L ++    +S    L     S 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 8/150 (5%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L L  N    K++ +          NLI + L     SS    T   L +L  L +
Sbjct: 98  NLTELHLMSNSIQ-KIKNNPFVKQ----KNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
           S    Q L          S L+ L LS  +     P     +  L   +L++      L 
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 146 TSLG---KLNSLKTFDISSCNILGKIPTSL 172
             L       S++   +S+  +     T+ 
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 15/155 (9%)

Query: 29  VLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88
           VL+L++N    +L  +  +      + L  + +     S         L  L  L++   
Sbjct: 29  VLNLTHNQLR-RLPAANFTRY----SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 89  S----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
                S   F +         L +L L                 NL    LS NG S   
Sbjct: 84  ELSQLSDKTFAFCTN------LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179
             +  +L +L+   +S+  I       L I    S
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT---NLSSLIY 82
            L  L+LS N    +        +      L  ++L +V    +++  L      +S+  
Sbjct: 172 SLKKLELSSNQIK-EFSPGCFHAI----GRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 83  LSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
           LS+S       S   F  L  +     L  L LS+         S   L  LE  +L  N
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTN----LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSV 180
                   SL  L +++  ++        I  + L ++    
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 34/153 (22%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           QL  LD+ +N  + KL+          L  L  + L   + S     T    ++L  L +
Sbjct: 50  QLTSLDVGFNTIS-KLEPELCQK----LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
              S      + F           L  L LS          +   L NL++  LS+N   
Sbjct: 105 MSNSIQKIKNNPFVKQKN------LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 142 GELPTSLGKLN--SLKTFDISSCNILGKIPTSL 172
                 L      SLK  ++SS  I    P   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 17/157 (10%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L VL+L +N  +  L     +      TNL E++L+        +       +LI L +
Sbjct: 74  MLKVLNLQHNELSQ-LSDKTFAFC----TNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLG--NLTNLEDRYLSDNG 139
           S              L        L++L LS  K        L     ++L+   LS N 
Sbjct: 129 SHNGLSSTKLGTQVQLEN------LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
                P     +  L    +++  +   +   L + L
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 10/167 (5%)

Query: 12  GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS 71
              T  +        +  L LS +  +     +    L  K TNL  + L   + +   +
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGL--KWTNLTMLDLSYNNLNVVGN 265

Query: 72  PTLTNLSSLIYLSISECS----SQDLFGYLPKSQKGSL---LEDLRLSFTKFLGKIPPSL 124
            +   L  L Y  +   +           L   +  +L        +S          S 
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 125 GNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171
             L  LE   + DN   G        L +LK   +S+     +  T+
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 9/158 (5%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL-- 83
            L  L L               +  + L NL  + L + + ++     L  L  L  L  
Sbjct: 455 SLQRLMLRRVALKNV---DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 84  ---SISECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG 139
              +++        G      KG S L  L L    F         +L  L+   L  N 
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            +    +      SLK+ ++    I             
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 27/151 (17%), Positives = 44/151 (29%), Gaps = 18/151 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
              V D S+             +L    TN+  + L         +   T  S L  L +
Sbjct: 5   SHEVADCSHLKL-----TQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
              +      +L   LP       L+ L L   +       +    TNL + +L  N   
Sbjct: 57  GFNTISKLEPELCQKLPM------LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
                   K  +L T D+S   +      + 
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYL----IDVDTSSAVSPTLTNLSSLI 81
            L  L++  N           SN+   L NL  + L      + T +  +      S L 
Sbjct: 330 CLEHLNMEDNDI-----PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 82  YLSISECSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNG 139
            L++++     +      +      LE L L   +   ++       L N+ + YLS N 
Sbjct: 385 ILNLTKNK---ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 140 FSGELPTSLGKLNSLKTFDISSCNI 164
           +      S   + SL+   +    +
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKS--GLSNLAKKLT---NLIEIYLIDVDTSSAVSPTLTNLSSL 80
           QL    L YN+       S  GL N+ + L    +  +  +           +   L  L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNV-RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 81  IYLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLG----NLTNLED 132
            +L++ +        ++F  L        L+ L LS +    +   +        + L  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLIN------LKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 133 RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             L+ N  S     +   L  L+  D+    I  ++       L 
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 15/152 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           QL  LD  +++     + S   +L     NLI + +    T  A +     LSSL  L +
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSL----RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 86  SECS-----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +  S       D+F  L        L  L LS  +     P +  +L++L+   +S N F
Sbjct: 453 AGNSFQENFLPDIFTELRN------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
                     LNSL+  D S  +I+      L
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 25  LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
             L  L  + N       +  L +L       +++    +      S +    +SL YL 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSL-----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNGFSGE 143
           +S      +       ++   LE L    +        S   +L NL    +S       
Sbjct: 380 LSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
                  L+SL+   ++  +        +   L 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L VLDLS       ++     +L    ++L  + L      S      + LSSL  L  
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGF 140
            E +         G+L        L++L ++       K+P    NLTNLE   LS N  
Sbjct: 108 VETNLASLENFPIGHLKT------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 141 SGELPTSLGKLNSLKTF----DISSCNILGKIPTSL 172
                T L  L+ +       D+S   +    P + 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 54  TNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDL----FGYLPKSQKGSLLEDL 109
            +   + L         S +  +   L  L +S C  Q +    +  L        L  L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH------LSTL 81

Query: 110 RLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILG-KI 168
            L+          +   L++L+     +   +      +G L +LK  +++   I   K+
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 169 PTSL 172
           P   
Sbjct: 142 PEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 21/161 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L L+ N     L     S L    ++L ++  ++ + +S  +  + +L +L  L++
Sbjct: 77  HLSTLILTGNPIQS-LALGAFSGL----SSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 86  SEC-----SSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR----YLS 136
           +          + F  L        LE L LS  K        L  L  +        LS
Sbjct: 132 AHNLIQSFKLPEYFSNLTN------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            N  +   P +  ++  L    + +      +  + +  L 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLA 225

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 17/141 (12%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLSI 85
           L  LD+S+ H          + L    ++L  + +          P   T L +L +L +
Sbjct: 423 LIYLDISHTHTRV-AFNGIFNGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
           S+C     S   F  L        L+ L +S   F          L +L+    S N   
Sbjct: 478 SQCQLEQLSPTAFNSLSS------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 142 GELPTSLGKL-NSLKTFDISS 161
                 L    +SL   +++ 
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 10/159 (6%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  LDLS N     +  + L  L +     + + L     +  + P       L  L++
Sbjct: 150 NLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 86  SECS-----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN-- 138
                     +     L   +   L+     +          +L  L NL          
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 139 -GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
             +  ++      L ++ +F + S  I      S     
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 17/163 (10%)

Query: 23  RALQLGVLDLSYNHFAFKLQKSGLSNLAK---------KLTNLIEIYLIDVDTSSAVSPT 73
           + ++L  L L  N  +  + K+ +  LA          +  N   +   D      +   
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 74  LTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
                 L YL        DLF  L        +    L                   +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTN------VSSFSLVSVTIER--VKDFSYNFGWQHL 309

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
            L +  F       L  L  L        N   ++    L  L
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
            L  L L+ N  +   +K  L +L+   L+    +      + S +       +SL +L 
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDL-----GTNSLRHLD 382

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNGFSGE 143
           +S   +  +       ++   L+ L    +        S   +L  L    +S      +
Sbjct: 383 LSFNGAIIMSANFMGLEE---LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
                  L SL T  ++  +      +++     
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 15/152 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L  LD  ++      + S   +L      L+ + +   +T          L+SL  L +
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSL----EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 86  S-----ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +     + +  ++F           L  L LS  +           L  L+   +S N  
Sbjct: 456 AGNSFKDNTLSNVFANTTN------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
                +   +L SL T D S   I        
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 29  VLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88
            +DLS+N     L+    SN     + L  + L   +  +        L  L  L ++  
Sbjct: 36  NIDLSFNPLK-ILKSYSFSNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 89  S----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-E 143
                S   F  L        LE+L    TK        +G L  L+   ++ N     +
Sbjct: 91  PIQSFSPGSFSGLTS------LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 144 LPTSLGKLNSLKTFDISSCNI 164
           LP     L +L   D+S   I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIYLS 84
           +L  LD+SY +            L    T+L  + +       + +S    N ++L +L 
Sbjct: 425 KLLYLDISYTNTKI-DFDGIFLGL----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 85  ISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +S+C     S  +F  L +      L+ L +S    L         L +L     S N  
Sbjct: 480 LSKCQLEQISWGVFDTLHR------LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 141 SGELPTSLGKLNSLKTFDISSCNI 164
                       SL  F++++ ++
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 28/161 (17%), Positives = 44/161 (27%), Gaps = 21/161 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS- 84
            L  L L+ N           S L    T+L  +  ++   +S  S  +  L +L  L+ 
Sbjct: 81  HLSNLILTGNPIQS-FSPGSFSGL----TSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 85  ----ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR----YLS 136
               I  C     F  L        L  + LS+          L  L           +S
Sbjct: 136 AHNFIHSCKLPAYFSNLTN------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            N     +     +   L    +        I  + L  L 
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSLIYLS 84
            L  L       A  L+   +  L      L ++ +      S  +    +NL++L+++ 
Sbjct: 105 SLENLVAVETKLA-SLESFPIGQL----ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 85  IS----ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +S    +  + +   +L ++    +   L +S    +  I         L +  L  N  
Sbjct: 160 LSYNYIQTITVNDLQFLRENP--QVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 141 SGELP-TSLGKLNSLKTFDISSCNILGKIPTSLL 173
           S  +  T L  L  L    +       +    + 
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 34/156 (21%), Positives = 49/156 (31%), Gaps = 19/156 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L  LDLS       ++      L     +L  + L      S    + + L+SL  L  
Sbjct: 57  ELQWLDLSRCEIE-TIEDKAWHGL----HHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGF 140
            E           G L        L+ L ++       K+P    NLTNL    LS N  
Sbjct: 112 VETKLASLESFPIGQLIT------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 141 SGELPTSLGKLNSLKTFDIS---SCNILGKIPTSLL 173
                  L  L      ++S   S N +  I     
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165
            +++ LSF         S  N + L+   LS          +   L+ L    ++   I 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 166 GKIPTSL 172
              P S 
Sbjct: 94  SFSPGSF 100

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 23  RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82
            +     L+         + K   ++  + L       + D D S AV   L  +S +  
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VES 258

Query: 83  LSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
           +++ +      S + F           L++L L+ T  L ++P  L  L+ L+   LS N
Sbjct: 259 INLQKHYFFNISSNTFHCFSG------LQELDLTATH-LSELPSGLVGLSTLKKLVLSAN 311

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            F      S     SL    I       ++ T  L  L 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 25  LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN--LSSLIY 82
                L+L+ N        +G+   A        +          +   L N  + SL  
Sbjct: 179 ATNLSLNLNGNDI------AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 83  LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
            +  +   +D+   + +      +E + L    F      +    + L++  L+    S 
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
           ELP+ L  L++LK   +S+         S 
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 27/140 (19%), Positives = 39/140 (27%), Gaps = 15/140 (10%)

Query: 29  VLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88
            L+ S+N     +Q +  S L     NL  + L           T  +   L  L ++  
Sbjct: 37  CLEFSFNVLP-TIQNTTFSRL----INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 89  S----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
                ++              L+ L    T         L N   LE  YL  N  S   
Sbjct: 92  PLIFMAETALSGPKA------LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 145 PTSLGKLNSLKTFDISSCNI 164
                    LK  D  +  I
Sbjct: 146 LPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 39/160 (24%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-LTNLSSLIYLS 84
            L  L+LSYN     L+             L  + L         + +   NL  L  L+
Sbjct: 377 HLQSLNLSYNEPL-SLKTEAFKEC----PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 85  ISECS----SQDLFGYLPKSQKGSLLEDLRLS---FTKFLGKIPPSLGNLTNLEDRYLSD 137
           +S       S+ LF  LP       L+ L L    F K   +   SL  L  LE   LS 
Sbjct: 432 LSHSLLDISSEQLFDGLPA------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
              S     +   L  +   D+S  N L       L  L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           QL +LDL++     K  +S   NL      L  + L       +       L +L +L++
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNL----HLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 86  SECSSQDLFGYLPKSQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
                         S +    LE L LSF         +  +L  +    LS N  +   
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSL 172
             +L  L  +   +++S +I   +P+ L
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  LDL+  H       S L +    L+ L ++ L      +    + +N  SL +LSI
Sbjct: 279 GLQELDLTATHL------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 86  SECSSQDLFGYLPKSQKGSL--LEDLRLSFTK--FLGKIPPSLGNLTNLEDRYLSDNGFS 141
              +       L      +L  L +L LS             L NL++L+   LS N   
Sbjct: 333 KGNT---KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
                +  +   L+  D++   +  K   S    L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 19/153 (12%), Positives = 35/153 (22%), Gaps = 16/153 (10%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  LDL+       + +    +       L  + L            L+   +L +L  
Sbjct: 58  NLTFLDLTRCQIY-WIHEDTFQSQ----HRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 86  SECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
            +                      LE L L          P       L+     +N   
Sbjct: 113 IQTGISSIDFIPLHNQKT------LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 142 GELPTSLGKLNSLKTFDIS-SCNILGKIPTSLL 173
                 +  L       ++ + N +  I     
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID---VDTSSAVSPTLTNLSSLIY 82
            L VL+LS++       +     L      L  + L        +   + +L  L  L  
Sbjct: 426 LLKVLNLSHSLLDI-SSEQLFDGL----PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 83  LSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
           L +S C      Q  F  L        +  + LS  +       +L +L  +    L+ N
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKM------MNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN 533

Query: 139 GFSGELPTSLGKLNSLKTFDISS 161
             S  LP+ L  L+  +T ++  
Sbjct: 534 HISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/149 (14%), Positives = 35/149 (23%), Gaps = 8/149 (5%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L       +  +    L N       L  +YL     SS   P       L  L  
Sbjct: 106 ALKHLFFIQTGIS-SIDFIPLHNQ----KTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
              +   L      S + +    L L+    +  I P   +    +            + 
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 146 TSLG--KLNSLKTFDISSCNILGKIPTSL 172
             L    + SL        +     P   
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 19/163 (11%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
            +IS +A    L       N        + ++ +A  +T L  + + +   +      L 
Sbjct: 190 EDISPLASLTSLHYFTAYVNQI------TDITPVAN-MTRLNSLKIGNNKITD--LSPLA 240

Query: 76  NLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
           NLS L +L I      D+     L K      L+ L +   +        L NL+ L   
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTK------LKMLNVGSNQI--SDISVLNNLSQLNSL 292

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
           +L++N    E    +G L +L T  +S  +I    P + L ++
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 19/141 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L  L +  N        + LS LA  L+ L  + +     S      + +L+ L  L++
Sbjct: 222 RLNSLKIGNNKI------TDLSPLAN-LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272

Query: 86  SECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143
                 D+     L +      L  L L+  +   +    +G LTNL   +LS N  +  
Sbjct: 273 GSNQISDISVLNNLSQ------LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 144 LPTSLGKLNSLKTFDISSCNI 164
            P  L  L+ + + D ++  I
Sbjct: 327 RP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           ++I  +     L  L+L+ N        + +S L   L  L  +Y+            L 
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQI------TDISPL-SNLVKLTNLYIGT--NKITDISALQ 107

Query: 76  NLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
           NL++L  L ++E +  D+     L K      +  L L            L N+T L   
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTK------MYSLNLGANH-NLSDLSPLSNMTGLNYL 160

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
            ++++       T +  L  L +  ++   I    P + L  L
Sbjct: 161 TVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 21/156 (13%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           + I   A   +     L           + +    + L ++ ++ +     +S     + 
Sbjct: 13  NQIFPDADLAEGIRAVLQKASV------TDVVTQEE-LESITKLVVAGEKVASI--QGIE 63

Query: 76  NLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
            L++L YL+++     D+     L K      L +L +   K       +L NLTNL + 
Sbjct: 64  YLTNLEYLNLNGNQITDISPLSNLVK------LTNLYIGTNKI--TDISALQNLTNLREL 115

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
           YL+++  S    + L  L  + + ++ + + L  + 
Sbjct: 116 YLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS 149

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL-- 83
           QL  L LS N  +F   K   S      T+L  + L      + +S     L  L +L  
Sbjct: 53  QLTKLSLSSNGLSF---KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 108

Query: 84  ---SISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNG 139
              ++ + S   +F  L        L  L +S T             L++LE   ++ N 
Sbjct: 109 QHSNLKQMSEFSVFLSLRN------LIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 140 FSGEL-PTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           F     P    +L +L   D+S C +  ++  +    L 
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 41/185 (22%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLS 84
            L  LDLS+N          +S+    L  L  +     +           +L +LIYL 
Sbjct: 79  SLKYLDLSFNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 85  ISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNG 139
           IS          +F  L        LE L+++   F     P     L NL    LS   
Sbjct: 133 ISHTHTRVAFNGIFNGLSS------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 140 FSGELP-------TSLGKLN------------------SLKTFDISSCNILGKIPTSLLI 174
              +L        +SL  LN                  SL+  D S  N +       L 
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQ 244

Query: 175 RLPPS 179
             P S
Sbjct: 245 HFPSS 249

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 19/167 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           QL +L+L   +    + K    NL     NL  + L               L  L  L +
Sbjct: 49  QLQLLELGSQYTPLTIDKEAFRNL----PNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 86  SECS------SQDLFGYLPKSQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDN 138
             C           F  L        L  L LS  +     + PS G L +L+    S N
Sbjct: 105 YFCGLSDAVLKDGYFRNLKA------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 139 GFSGELPTSLGKL--NSLKTFDISSCNILGKIPTSLLIRLPPSVALS 183
                    L  L   +L  F +++ ++  ++       + P   + 
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 20/144 (13%)

Query: 25  LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
             +  LDLS+    F L       L     +L  + L     +         L +L  L+
Sbjct: 266 SSVRHLDLSHGFV-FSLNSRVFETL----KDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 85  ISECSSQDL----FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +S     +L    F  LPK      +  + L           +   L  L+   L DN  
Sbjct: 321 LSYNLLGELYSSNFYGLPK------VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 141 SGELPTSLGKLNSLKTFDISSCNI 164
                T++  + S+    +S   +
Sbjct: 375 -----TTIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 12  GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS 71
            +  S    +  A  +      +++      ++  + LA+  +++  + L      S  S
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLAR--SSVRHLDLSHGFVFSLNS 283

Query: 72  PTLTNLSSLIYLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
                L  L  L+++       + + F  L        L+ L LS+         +   L
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDN------LQVLNLSYNLLGELYSSNFYGL 337

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
             +    L  N  +     +   L  L+T D+    +
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 24/158 (15%)

Query: 17  NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN 76
            ++ +     +  + LS N    KL      NL   L +L E  L ++D        L  
Sbjct: 373 ALTTIHFIPSIPDIFLSGN----KLVTLPKINLTANLIHLSENRLENLDILY----FLLR 424

Query: 77  LSSLIYL-----SISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSL-----GN 126
           +  L  L       S CS        P       LE L L            L       
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPS------LEQLFLGENMLQLAWETELCWDVFEG 478

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
           L++L+  YL+ N  +   P     L +L+   ++S  +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 18/162 (11%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
                  R + L +LD+S N +   +  +  + ++K                     +L 
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF-----------------SLI 237

Query: 76  NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL 135
               ++       + +D           S +  L LS              L +L+   L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 136 SDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           + N  +     +   L++L+  ++S  N+LG++ +S    LP
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLP 338

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLS 84
           +L  L L  N     +     + +     +L  + L ++   S +S      LS+L YL+
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRI----PSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 85  ISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNGFS 141
           ++ C+ +++     L K      L++L LS    L  I P S   L +L+  ++  +   
Sbjct: 192 LAMCNLREIPNLTPLIK------LDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP--SVALSSTP 186
                +   L SL   +++  N L  +P  L   L     + L   P
Sbjct: 245 VIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L+L  N     +       L    + L E++L +    S  S     + SL  L +
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYL----SKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 86  SECS-----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
            E       S+  F  L        L  L L+    L +IP +L  L  L++  LS N  
Sbjct: 168 GELKRLSYISEGAFEGLSN------LRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHL 219

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           S   P S   L  L+   +   + +  I  +    L 
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQ 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
            +I  +A    L  LDL+ N        S L+ L   LT L E+ L     S+     L 
Sbjct: 234 KDIGTLASLTNLTDLDLANNQI------SNLAPL-SGLTKLTELKLGANQISN--ISPLA 284

Query: 76  NLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
            L++L  L ++E   +D+     L        L  L L F       P  + +LT L+  
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKN------LTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
           +  +N  S    +SL  L ++         I    P + L R+
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI 377

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           S+IS ++    L  L             + L  LA  LT L  + +       +    L 
Sbjct: 147 SDISALSGLTSLQQLSFGNQ-------VTDLKPLAN-LTTLERLDISS--NKVSDISVLA 196

Query: 76  NLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133
            L++L  L  +     D+   G L        L++L L+  +   K   +L +LTNL D 
Sbjct: 197 KLTNLESLIATNNQISDITPLGILTN------LDELSLNGNQL--KDIGTLASLTNLTDL 248

Query: 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
            L++N  S   P  L  L  L    + +  I    P + L  L
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL 289

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +     L   +       +   +    L  +  +    +   S     +  L++L  ++ 
Sbjct: 25  EKMKTVLGKTNV------TDTVSQTD-LDQVTTLQADRLGIKSI--DGVEYLNNLTQINF 75

Query: 86  SECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143
           S     D+     L K      L D+ ++  +        L NLTNL    L +N  +  
Sbjct: 76  SNNQLTDITPLKNLTK------LVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD- 126

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
               L  L +L   ++SS  I      S L  L
Sbjct: 127 -IDPLKNLTNLNRLELSSNTISDISALSGLTSL 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLA-KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84
            L  LD+S N          L +   + L NL  + + D D         + L+SL  L+
Sbjct: 105 NLTKLDISENKI------VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 85  ISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNG 139
           + +C+      +   +L        L  LRL     +  I   S   L  L+   +S   
Sbjct: 159 LEKCNLTSIPTEALSHLHG------LIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWP 211

Query: 140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           +   +  +     +L +  I+ CN+   +P   +  L 
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLV 248

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 10/153 (6%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L L   +    +    LS+L      LI + L  ++ ++    +   L  L  L I
Sbjct: 153 SLEQLTLEKCNLT-SIPTEALSHL----HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNGFSGEL 144
           S     D     P    G  L  L ++    L  +P  ++ +L  L    LS N  S   
Sbjct: 208 SHWPYLDTMT--PNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            + L +L  L+   +     L  +       L 
Sbjct: 265 GSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLN 296

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 35/160 (21%), Positives = 51/160 (31%), Gaps = 25/160 (15%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLI----EIYLIDVDTSSAVSPTLTNLSSLI 81
            L  L L  N     +     + L   LT L     +I ++             +L +L 
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGL-SNLTKLDISENKIVILLDYM-------FQDLYNLK 131

Query: 82  YLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLS 136
            L + +      S   F  L        LE L L     L  IP  +L +L  L    L 
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNS------LEQLTLEKCN-LTSIPTEALSHLHGLIVLRLR 184

Query: 137 DNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
               +     S  +L  LK  +IS    L  +  + L  L
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 52  KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDL 109
           ++ +L  I L +++ +  ++  +    ++  L+I+   + +      L        LE L
Sbjct: 42  QMNSLTYITLANINVTD-LTG-IEYAHNIKDLTINNIHATNYNPISGLSN------LERL 93

Query: 110 RLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKI 168
           R+          P+L  LT+L    +S +     + T +  L  + + D+S    +  I
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 20/143 (13%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  + L+  +       + L+ + +   N+ ++ + ++  ++  +P ++ LS+L  L I
Sbjct: 45  SLTYITLANINV------TDLTGI-EYAHNIKDLTINNIHATN-YNP-ISGLSNLERLRI 95

Query: 86  SECSSQDL----FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
                          L        L  L +S +     I   +  L  +    LS NG  
Sbjct: 96  MGKDVTSDKIPNLSGLTS------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 142 GELPTSLGKLNSLKTFDISSCNI 164
            ++   L  L  LK+ +I    +
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 52  KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDL 109
             +         +  SS  + T   ++SL Y++++  +  DL    Y         ++DL
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN------IKDL 71

Query: 110 RLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
            ++         P +  L+NLE   +     + +   +L  L SL   DIS       I 
Sbjct: 72  TINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 170 TSL 172
           T +
Sbjct: 130 TKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 16/131 (12%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           +N + ++    L  L +        +    + NL+  LT+L  + +       ++   + 
Sbjct: 79  TNYNPISGLSNLERLRIMGK----DVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKIN 133

Query: 76  NLSSLIYLSISEC---SSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED 132
            L  +  + +S     +       LP+      L+ L + F   +      + +   L  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTLPE------LKSLNIQFDG-VHDYRG-IEDFPKLNQ 185

Query: 133 RYLSDNGFSGE 143
            Y       G+
Sbjct: 186 LYAFSQTIGGK 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 17  NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN 76
            +S +A  + +  LD S+N     ++      L   L  L    L D          L N
Sbjct: 197 LLSTLAIPIAVEELDASHNSIN-VVRGPVNVEL-TIL-KLQHNNLTDT-------AWLLN 246

Query: 77  LSSLIYLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED 132
              L+ + +S           F  + +      LE L +S  + L  +      +  L+ 
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQR------LERLYISNNR-LVALNLYGQPIPTLKV 299

Query: 133 RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             LS N     +  +  + + L+   +   N +  +  S    L 
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLK 342

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSLIYLS 84
            L  LDLS+N          +S+    L  L  +     +    +      +L +LIYL 
Sbjct: 374 SLKYLDLSFNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 85  ISECSSQDL----FGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNG 139
           IS   ++      F  L        LE L+++   F     P     L NL    LS   
Sbjct: 428 ISHTHTRVAFNGIFNGLSS------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
                PT+   L+SL+  +++S N L  +P  +  RL 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 11/154 (7%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L  + N       +  L +L       +++    +      S +    +SL YL +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEF-----LDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS--LGNLTNLEDRYLSDNGFSGE 143
           S      +       ++   LE L    +  L ++       +L NL    +S       
Sbjct: 381 SFNGVITMSSNFLGLEQ---LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
                  L+SL+   ++  +        +   L 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L VLDLS       ++     +L    ++L  + L      S      + LSSL  L  
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 86  SECSSQDL----FGYLPKSQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGF 140
            E +   L     G+L        L++L ++       K+P    NLTNLE   LS N  
Sbjct: 108 VETNLASLENFPIGHLKT------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 141 SGELPTSLGKLNSLKTFDIS---SCNILGKIPTSLLIRL 176
                T L  L+ +   ++S   S N +  I       +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL-- 83
           QL  LD  ++     L++    ++   L NLI + +    T  A +     LSSL  L  
Sbjct: 397 QLEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 84  ---SISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNG 139
              S  E    D+F  L        L  L LS  + L ++ P+   +L++L+   ++ N 
Sbjct: 453 AGNSFQENFLPDIFTELRN------LTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 140 FSGELPTSLGKLNSLKTFDISS 161
                     +L SL+   + +
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 19/163 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSLIYLS 84
            L  L     + A  L+   + +L      L E+ +      S  +    +NL++L +L 
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 85  IS----ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
           +S    +         L +     L   L LS    +  I P       L    L +N  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMP--LLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 141 SGELP-TSLGKLNSLKTFDIS-----SCNILGKIPTSLLIRLP 177
           S  +  T +  L  L+   +      +   L K   S L  L 
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 71  SPTLTNLSSLIYLSISECSSQDL----FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGN 126
           S +  +   L  L +S C  Q +    +  L        L  L L+          +   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH------LSTLILTGNPIQSLALGAFSG 98

Query: 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
           L++L+     +   +      +G L +LK  +++   I
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 17  NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN 76
            +S +A  + +  LD S+N     ++      L   L  L    L D          L N
Sbjct: 203 LLSTLAIPIAVEELDASHNSIN-VVRGPVNVEL-TIL-KLQHNNLTDT-------AWLLN 252

Query: 77  LSSLIYLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED 132
              L+ + +S           F  + +      LE L +S  + L  +      +  L+ 
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQR------LERLYISNNR-LVALNLYGQPIPTLKV 305

Query: 133 RYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             LS N     +  +  + + L+   +   N +  +  S    L 
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLK 348

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 26  QLGVLDLSYNHFAF---------KLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT--- 73
           QL   +LS               +LQ+    N    LT ++ +  +D       +     
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 74  -LTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED 132
            L  +  +    + +  S+ L        + + +  L L+  K L  +   L  L  +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-HKDLTVLC-HLEQLLLVTH 467

Query: 133 RYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
             LS N     LP +L  L  L+    S   +
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN 163
            L+  L LS  + L  +PP+L  L  LE    SDN     +   +  L  L+   + +  
Sbjct: 463 LLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519

Query: 164 I 164
           +
Sbjct: 520 L 520

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 12/179 (6%)

Query: 9   QDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS 68
            D   +    + + ++L L  L +       ++    L  L   ++ L E+ L +++ + 
Sbjct: 52  VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG--ISGLQELTLENLEVTG 109

Query: 69  AVSPTLTNLS--SLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSL 124
              P L   +   L  L++   S      +L + Q+     L+ L ++    L      +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 125 GNLTNLEDRYLSDNGFSGELP----TSLGKLNSLKTFDISSCNI--LGKIPTSLLIRLP 177
                L    LSDN   GE          K  +L+   + +  +     + ++L     
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 28/147 (19%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           +L  L++S N          L++L      L+E+ +     +  +    + L  L ++  
Sbjct: 82  ELRTLEVSGNQ---------LTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCKL-WIFG 130

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
           ++ +S      LP    G  L++L +S  + L  +P     L  L   +  +N  +  LP
Sbjct: 131 NQLTS------LPVLPPG--LQELSVSDNQ-LASLPALPSELCKL---WAYNNQLT-SLP 177

Query: 146 TSLGKLNSLKTFDISSCNILGKIPTSL 172
                L  L    +S  N L  +PT  
Sbjct: 178 MLPSGLQEL---SVSD-NQLASLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 28/165 (16%), Positives = 46/165 (27%), Gaps = 31/165 (18%)

Query: 20  RVARALQLGVLDLSYNHFA------------FKLQKSGLSNLAKKLTNLIEIYLIDVDTS 67
           R        VL++  +                 +  + L++L      L  + +     +
Sbjct: 35  RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT 94

Query: 68  SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNL 127
           S +      L  L   S            LP       L  L +   + L  +P     L
Sbjct: 95  S-LPVLPPGLLELSIFSNPLTH----LPALPSG-----LCKLWIFGNQ-LTSLPVLPPGL 143

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
             L    +SDN  +  LP    +L  L        N L  +P   
Sbjct: 144 QEL---SVSDNQLA-SLPALPSELCKLWA----YNNQLTSLPMLP 180

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSP-TLTNLSSLIYLS 84
           L  L +  N    K++KS  + L      +I + L      SS +       +  L Y+ 
Sbjct: 123 LQELRVHENEI-TKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNGFSGE 143
           I++ +   +   LP S     L +L L   K + K+   SL  L NL    LS N  S  
Sbjct: 178 IADTNITTIPQGLPPS-----LTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 144 LPTSLGKLNSLKTFDISSCNILGKIPTSL 172
              SL     L+   +++ N L K+P  L
Sbjct: 232 DNGSLANTPHLRELHLNN-NKLVKVPGGL 259

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 14/169 (8%)

Query: 18  ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD---TSSAVSPTL 74
           I+   R L+   LDL  +     +    LS+     T+L+ + +  +    + SA+   +
Sbjct: 151 IAATCRNLK--ELDLRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207

Query: 75  TNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSF------TKFLGKIPPSLGNLT 128
           T   +L  L ++     +    L   Q+   LE+L                +  +L    
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            L       +     LP      + L T ++S   +       LL + P
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD----TSSAVSPTLTNLSSLI 81
           ++  L +  + F+ +     L  LA+  T+L  +     +    +   +     N  SL+
Sbjct: 165 KIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 82  YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141
            + + +    +L G+   +          L+    + +   +L     L    LS  G +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
             +P        ++  D+    +  +   +L+ + P
Sbjct: 284 E-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 26/146 (17%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLA-KKLTNLIEIYL----IDVDTSSAVSPTLTNLSSLI 81
              + L+ N        + L +L     + +  + L    ID    + ++ +   L  L 
Sbjct: 122 KKNIYLANNKI------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL- 174

Query: 82  YLS---ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
            L    I +         +      + L+ L LS  K L  + P   +   +    L +N
Sbjct: 175 NLQYNFIYD---------VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224

Query: 139 GFSGELPTSLGKLNSLKTFDISSCNI 164
                +  +L    +L+ FD+     
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
           ++  LDL  N    ++     + LA     L  + L                + L  L +
Sbjct: 145 RVQYLDLKLN----EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDL 198

Query: 86  SECSSQDL---FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS- 141
           S      +   F           +  + L   K L  I  +L    NLE   L  NGF  
Sbjct: 199 SSNKLAFMGPEFQSAAG------VTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 142 GELPTSLGKLNSLKTFDISSCNIL 165
           G L     K   ++T    +   L
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKL 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 51  KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG--YLPKSQKGSLLED 108
                 I+  L     + AV  T   L+S+  +  +    + + G  YLP       +  
Sbjct: 18  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPN------VTK 69

Query: 109 LRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
           L L+  K L  I P L NL NL   +L +N    +L +SL  L  LK+  +    I
Sbjct: 70  LFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI 121

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L  L+L  N     +       L    + L E++L +    S  S     + SL+ L +
Sbjct: 124 SLNTLELFDNWLTV-IPSGAFEYL----SKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 86  SECS-----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGF 140
            E       S+  F  L        L+ L L       K  P+L  L  LE+  +S N F
Sbjct: 179 GELKKLEYISEGAFEGLFN------LKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHF 230

Query: 141 SGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
               P S   L+SLK   + +  +   I  +    L 
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLA 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 73  TLTNLSSLIYLSISECS----SQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNL 127
           T  +L  L  L +   S        F  L        L  L L     L  IP  +   L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS------LNTLELFDNW-LTVIPSGAFEYL 146

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
           + L + +L +N        +  ++ SL   D+     L  I       L 
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 17/145 (11%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL-- 83
            L VL L  +     ++     +    L +L  + L D   SS  S     LSSL YL  
Sbjct: 51  NLQVLILKSSRIN-TIEGDAFYS----LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 84  ---SISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNG 139
                       LF  L        L+ LR+   +   +I       LT+L +  +    
Sbjct: 106 MGNPYQTLGVTSLFPNLTN------LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 140 FSGELPTSLGKLNSLKTFDISSCNI 164
                  SL  +  +    +     
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSES 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 28/139 (20%), Positives = 41/139 (29%), Gaps = 20/139 (14%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
            L ++D+  N          L  L     +L  I     +      P L NL  L  +  
Sbjct: 154 FLKIIDVDNNS---------LKKLPDLPPSLEFIAA--GNNQLEELPELQNLPFLTAIYA 202

Query: 86  SECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
              S + L            LE +         +  P L NL  L   Y  +N     LP
Sbjct: 203 DNNSLKKLPDLPLS------LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLP 253

Query: 146 TSLGKLNSLKTFDISSCNI 164
                L +L   D    ++
Sbjct: 254 DLPPSLEALNVRDNYLTDL 272

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 87  ECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPP-SLGNLTNLEDRYLSDNGFSGELP 145
            C+       L        L +L +   + L  +    L  L  L +  +  +G     P
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 146 TSLGKLNSLKTFDISSCNILGKIPTSLLIRLP-PSVALSSTP 186
            +      L   ++S  N L  +    +  L    + LS  P
Sbjct: 74  DAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLA-KKLTNLIEIYLIDVD-TSSAVSPTLTNLSSLIYLS 84
              + L+ N        + L +L     + +  + L   +  +   +    +  +L +L+
Sbjct: 122 KKNIYLANNKI------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 85  ISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144
           +      D+ G +  ++    L+ L LS  K L  + P   +   +    L +N     +
Sbjct: 176 LQYNFIYDVKGQVVFAK----LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 145 PTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
             +L    +L+ FD+               + 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 39/176 (22%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 26  QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLS 84
            L +L L  N  A  +  +  + L      L ++ L D     +V P T   L  L  L 
Sbjct: 57  NLTILWLHSNVLAR-IDAAAFTGL----ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 85  ISECS----SQDLFGYLPKSQKGSL------------------LEDLRLSFTKFLGKIPP 122
           +  C        LF  L   Q   L                  L  L L   + +  +P 
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE 170

Query: 123 -SLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177
            +   L +L+   L  N  +   P +   L  L T  + + N L  +PT  L  L 
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLR 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.68

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=4.8e-24  Score=179.25  Aligned_cols=164  Identities=23%  Similarity=0.330  Sum_probs=103.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|.  +   .+.+|..+..+++|+.|++++|.+.+..|..++.+++|+
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR--L---TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C---CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc--c---CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            45566666666655555566666666666666666  3   445566666666666666666666666666666666666


Q ss_pred             eEeeccccccccccCC----------------------------------------------------------------
Q 038090           82 YLSISECSSQDLFGYL----------------------------------------------------------------   97 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~----------------------------------------------------------------   97 (186)
                      +|++++|.+.   +.+                                                                
T Consensus       542 ~L~Ls~N~l~---g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          542 WLDLNTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             EEECCSSEEE---SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             EEECCCCccC---CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            6666666332   111                                                                


Q ss_pred             ------CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090           98 ------PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus        98 ------~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                            |. +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|++|++++|+++|.+|.
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence                  11 23345566666666666666666666667777777777777666666666666777777777777666666


Q ss_pred             hHH
Q 038090          171 SLL  173 (186)
Q Consensus       171 ~~~  173 (186)
                      .+.
T Consensus       699 ~l~  701 (768)
T 3rgz_A          699 AMS  701 (768)
T ss_dssp             GGG
T ss_pred             HHh
Confidence            665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=5.3e-24  Score=178.99  Aligned_cols=162  Identities=26%  Similarity=0.350  Sum_probs=147.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc--------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT--------   73 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------   73 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|.  +   .+.+|..+..+++|+.|++++|.+.+..|..        
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l---~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--F---SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C---EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--c---cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            68899999999988888999999999999999999  5   6788889999999999999999887655543        


Q ss_pred             --------------------------------------------------------------cCCCCCCCeEeecccccc
Q 038090           74 --------------------------------------------------------------LTNLSSLIYLSISECSSQ   91 (186)
Q Consensus        74 --------------------------------------------------------------~~~l~~L~~L~l~~~~l~   91 (186)
                                                                                    ++.+++|++|++++|   
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N---  642 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN---  642 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS---
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC---
Confidence                                                                          334578999999999   


Q ss_pred             ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090           92 DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus        92 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      .+.+.+|. ++.++.|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++.+++|+++++++|+++|.+|.
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            67788998 99999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             h
Q 038090          171 S  171 (186)
Q Consensus       171 ~  171 (186)
                      .
T Consensus       723 ~  723 (768)
T 3rgz_A          723 M  723 (768)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.5e-23  Score=154.91  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=142.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      ++++|+++++.+....+..|..+++|++|++++|.  +   ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--L---QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--C---SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--c---CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence            57889999999887767788999999999999998  4   333334467889999999999999877677889999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       113 ~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          113 ELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcc---CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            999999944   333344 7888999999999999986555668889999999999999985444568889999999999


Q ss_pred             CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          161 SCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +|.++ .+|......++.+  ..+++||
T Consensus       190 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          190 NNQLK-RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCC-cCCHHHhccccCCCEEEecCCC
Confidence            99998 7887766566664  5667776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=4.2e-24  Score=162.33  Aligned_cols=177  Identities=21%  Similarity=0.223  Sum_probs=120.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCC-CC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS-SL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L   80 (186)
                      +|++|++++|.+....+..+..+++|++|++++|.  +   .+.+|..+..+++|++|++++|.+++..|..+..++ +|
T Consensus       102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A          102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--L---SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--E---ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--c---CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            46777777777765666677777777777777777  4   445666677777777777777777666666676666 67


Q ss_pred             CeEeecccccc--------------------ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc
Q 038090           81 IYLSISECSSQ--------------------DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG  139 (186)
Q Consensus        81 ~~L~l~~~~l~--------------------~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~  139 (186)
                      ++|++++|.+.                    .+.+..|. +..+++|+.|++++|.+.+..+. +..+++|++|++++|.
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred             cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence            77777766432                    12223344 55666677777777766544333 6667778888888888


Q ss_pred             CCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       140 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +.+.+|..+..+++|++|++++|+++|.+|..  ..++.+  ..+++||
T Consensus       256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             ccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            77777777888888888888888888777775  344443  4555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1e-23  Score=161.26  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=97.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCC-----
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN-----   76 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----   76 (186)
                      .|++|++++|.+. ..+..+..+++|++|++++|.  +    ..+|..+..+++|++|++++|...+..|..+..     
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~--l----~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP--L----RALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC--C----CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc--c----ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            4566666666665 445556667777777777776  3    245555666666666666666555444443332     


Q ss_pred             ----CCCCCeEeecccccc--------------------ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090           77 ----LSSLIYLSISECSSQ--------------------DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE  131 (186)
Q Consensus        77 ----l~~L~~L~l~~~~l~--------------------~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  131 (186)
                          +++|++|++++|.++                    .+. .+|. +..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence                444444444444322                    111 2333 45555566666666555555566666666666


Q ss_pred             EEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          132 DRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       132 ~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      +|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++. .++.+
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L  303 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPAN  303 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTT
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCc
Confidence            666666666656666666666666666666666666666665 44443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.3e-23  Score=160.74  Aligned_cols=120  Identities=20%  Similarity=0.215  Sum_probs=103.2

Q ss_pred             chhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc
Q 038090           45 GLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS  123 (186)
Q Consensus        45 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~  123 (186)
                      .+|..+..+++|++|++++|.+.+ .|..++.+++|++|++++|   ...+.+|. +..+++|+.|++++|.+.+.+|..
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTC---TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCC---cchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence            456667788888888888888885 5557888899999999998   55677887 899999999999999988899999


Q ss_pred             cCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090          124 LGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       124 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      +..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+. .+.
T Consensus       273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~-~l~  317 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLD  317 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC-C--
T ss_pred             hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH-HHh
Confidence            999999999999999999999999999999999999877665 443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=3.3e-23  Score=155.20  Aligned_cols=176  Identities=18%  Similarity=0.136  Sum_probs=100.7

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|+++++.+....+..+..+++|+.|++++|.. +   ....+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-L---RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC-c---cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            44455555544444344445555555555555530 0   1112334455555666666655555544555556666666


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      |++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       134 L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          134 LYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             EECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EECCCCcc---cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            66666632   222223 55666667777776666643444566677777777777777755566677777788888888


Q ss_pred             CcccccCChhHHHhCCCC--CCCCCCC
Q 038090          162 CNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       162 n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      |.++ .+|......++.+  ..+++||
T Consensus       211 n~l~-~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          211 NNLS-ALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             SCCS-CCCHHHHTTCTTCCEEECCSSC
T ss_pred             CcCC-cCCHHHcccCcccCEEeccCCC
Confidence            8777 5666555566654  4556654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=7.8e-24  Score=160.88  Aligned_cols=168  Identities=17%  Similarity=0.256  Sum_probs=129.9

Q ss_pred             Cccceeccc-ccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQD-FGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      +|+.|++++ +.+....+..|..+++|++|++++|.  +   .+.+|..+.++++|++|++++|.+.+..|..+..+++|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--V---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--C---EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--e---CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            688999995 78887778899999999999999999  5   56788889999999999999999998889999999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCC-cccEEEccCCcCCC-----------------------CCCcccCCCCCCCEEEc
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGS-LLEDLRLSFTKFLG-----------------------KIPPSLGNLTNLEDRYL  135 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~-----------------------~~~~~~~~l~~L~~L~L  135 (186)
                      ++|++++|.   +.+.+|. +..++ +|+.|++++|.+.+                       ..|..+..+++|++|++
T Consensus       152 ~~L~L~~N~---l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          152 VGITFDGNR---ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             CEEECCSSC---CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             CeEECcCCc---ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence            999999994   4445555 66665 66666666665543                       34445556666666777


Q ss_pred             CCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          136 SDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       136 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      ++|.+.+..+. +..+++|++|++++|.+++.+|..+. .++.+
T Consensus       229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L  270 (313)
T 1ogq_A          229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFL  270 (313)
T ss_dssp             CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTC
T ss_pred             CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCC
Confidence            76666643333 66677788888888888777777765 55554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=1.2e-22  Score=149.77  Aligned_cols=158  Identities=20%  Similarity=0.191  Sum_probs=128.6

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++++....+..+..+++|+.|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--L---QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD  110 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--C---CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence            57888999998887777788899999999999998  4   444555678889999999999998877777888899999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++++
T Consensus       111 ~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          111 KLYLGGNQL---KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCcC---CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            999999954   333333 6788899999999999886666678889999999999999985555568888999999999


Q ss_pred             CCccccc
Q 038090          161 SCNILGK  167 (186)
Q Consensus       161 ~n~~~~~  167 (186)
                      +|++...
T Consensus       188 ~N~~~c~  194 (251)
T 3m19_A          188 GNQFDCS  194 (251)
T ss_dssp             SCCBCTT
T ss_pred             CCceeCC
Confidence            9988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6e-22  Score=147.61  Aligned_cols=172  Identities=21%  Similarity=0.218  Sum_probs=115.8

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++.++.+..  .+.+..+++|+.|++++|.  +   . .+ +.+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~--l---~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNK--L---H-DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSC--C---C-CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ceeeeeeCCCCccc--ccccccCCCCcEEECCCCC--C---C-Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            46677777777654  3456777888888888887  3   2 22 2566777888888888877766666677778888


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+   .+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus       113 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          113 ELVLVENQL---QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             EEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcC---CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            888887743   333334 6677778888887777775555556777778888888877774444446777778888888


Q ss_pred             CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          161 SCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +|.++ .++......++.+  ..+++||
T Consensus       190 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          190 QNQLK-SVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCC-ccCHHHHhCCcCCCEEEccCCC
Confidence            77777 4555544455554  3444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.2e-22  Score=150.75  Aligned_cols=170  Identities=18%  Similarity=0.140  Sum_probs=142.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L   80 (186)
                      ++++|+++++.+....+..+..+++|+.|++++|.  +   ....+..+.++++|++|++++|. +....+..+..+++|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--L---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--c---ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            57899999999988777789999999999999999  4   44456778899999999999997 776667889999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      ++|++++|.   +....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       108 ~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          108 HTLHLDRCG---LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             CEEECTTSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCc---CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            999999994   4444455 788999999999999998666667889999999999999999444456889999999999


Q ss_pred             cCCcccccCChhHHHhCCCCC
Q 038090          160 SSCNILGKIPTSLLIRLPPSV  180 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l~~~~  180 (186)
                      ++|.+++..|..+. .++.+.
T Consensus       185 ~~n~l~~~~~~~~~-~l~~L~  204 (285)
T 1ozn_A          185 HQNRVAHVHPHAFR-DLGRLM  204 (285)
T ss_dssp             CSSCCCEECTTTTT-TCTTCC
T ss_pred             CCCcccccCHhHcc-Cccccc
Confidence            99999855566665 566553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.7e-22  Score=148.41  Aligned_cols=172  Identities=19%  Similarity=0.161  Sum_probs=136.6

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|++++|.+....+..+..+++|+.|++++|.  +    ..++.. ..+++|++|++++|.+. .+|..+..+++|+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l----~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~  103 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--L----TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT  103 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--C----CEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--c----CcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCC
Confidence            57788999988887767788899999999999998  3    223322 67889999999999887 4677888899999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEec
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l  159 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|. .+..+++|++|++
T Consensus       104 ~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          104 VLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             EEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcC---cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEEC
Confidence            999999954   333344 788899999999999998666667788999999999999999 5554 4678999999999


Q ss_pred             cCCcccccCChhHHHhC-CCCCCCCCCC
Q 038090          160 SSCNILGKIPTSLLIRL-PPSVALSSTP  186 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l-~~~~~l~~~~  186 (186)
                      ++|.++ .+|..++... ...+.+++||
T Consensus       180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          180 QENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            999998 8998887432 2345667776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=3.4e-22  Score=158.72  Aligned_cols=179  Identities=20%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|..+++|+.|++++|.  +   ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--I---RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--c---CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            45666666666665555666666666666666666  3   333334455566666666666665554444555556666


Q ss_pred             eEeeccccccccc---------------------cCCCC--CCCCC----------------------cccEEEccCCcC
Q 038090           82 YLSISECSSQDLF---------------------GYLPK--SQKGS----------------------LLEDLRLSFTKF  116 (186)
Q Consensus        82 ~L~l~~~~l~~~~---------------------~~~~~--~~~~~----------------------~L~~L~l~~~~~  116 (186)
                      +|++++|.+....                     ..++.  +..++                      +|+.|++++|.+
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            6666555443111                     11111  33334                      444444444544


Q ss_pred             CCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          117 LGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      .+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|......++.+  ..+++||
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence            4444555666666666666666666444556667777777777777776 6666665556654  4566665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=4.8e-22  Score=157.40  Aligned_cols=85  Identities=20%  Similarity=0.270  Sum_probs=56.2

Q ss_pred             CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC-
Q 038090          101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS-  179 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~-  179 (186)
                      ..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|......++.+ 
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLE  282 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCC
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCC
Confidence            33445555555555555444566666677777777777776545556777888888888888887 7777666566654 


Q ss_pred             -CCCCCCC
Q 038090          180 -VALSSTP  186 (186)
Q Consensus       180 -~~l~~~~  186 (186)
                       +.+++||
T Consensus       283 ~L~L~~Np  290 (440)
T 3zyj_A          283 RIHLHHNP  290 (440)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence             5666776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.4e-21  Score=143.94  Aligned_cols=173  Identities=17%  Similarity=0.167  Sum_probs=140.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +.+.++++++++... +..+.  ++++.|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus        15 ~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A           15 GKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTG--L---ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             GGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCeEEecCCCCcccc-CCCCC--CCCCEEEccCCC--c---CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence            356788888887654 33333  689999999999  4   455556788999999999999999988788899999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        87 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           87 TLGLANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             EEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcc---cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            999999954   333344 7889999999999999986666667899999999999999994444568999999999999


Q ss_pred             CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          161 SCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +|.++ .+|......++.+  +.+++||
T Consensus       164 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             SSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence            99998 7777555566664  5666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.2e-21  Score=144.57  Aligned_cols=159  Identities=22%  Similarity=0.206  Sum_probs=135.1

Q ss_pred             CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .+|+.|++++|.+..  .+.+..+++|++|++++|.  +   .+..+..+..+++|++|++++|.+.+..+..++.+++|
T Consensus        63 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQ--L---QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             TTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCc--c---CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            368899999999875  3578899999999999999  4   44445557889999999999999998777789999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      ++|++++|.+   ....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+++++
T Consensus       136 ~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          136 TYLNLAHNQL---QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             CEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcc---CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence            9999999944   433344 788999999999999998766777889999999999999999655666889999999999


Q ss_pred             cCCcccccCC
Q 038090          160 SSCNILGKIP  169 (186)
Q Consensus       160 ~~n~~~~~~p  169 (186)
                      ++|++.+..|
T Consensus       213 ~~N~~~~~~~  222 (272)
T 3rfs_A          213 HDNPWDCTCP  222 (272)
T ss_dssp             CSSCBCCCTT
T ss_pred             cCCCccccCc
Confidence            9999876555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=4.5e-22  Score=150.42  Aligned_cols=134  Identities=25%  Similarity=0.258  Sum_probs=88.8

Q ss_pred             HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCCCCcccCC
Q 038090           49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGN  126 (186)
Q Consensus        49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~  126 (186)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.   +.+ ..|. +..+++|+.|++++|.+.+..|..+..
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE---EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc---cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            45556666666666666665555566666777777777763   333 3455 677777888888877777556677777


Q ss_pred             CCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCC-C--CCCCCCCC
Q 038090          127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP-P--SVALSSTP  186 (186)
Q Consensus       127 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~-~--~~~l~~~~  186 (186)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+| .  ...+++||
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCEEEccCCC
Confidence            78888888888877744444577778888888888888755555555 333 3  34556664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=3.7e-22  Score=148.84  Aligned_cols=176  Identities=22%  Similarity=0.200  Sum_probs=131.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      ++++|+++++.+....+..+..+++|+.|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCc--C---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            57889999998887766688889999999999998  4   343444678889999999999988877677888899999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCchhhhcc--------
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKL--------  151 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--------  151 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+... +|..+..+++|++|++++|.+.+..+..+..+        
T Consensus       104 ~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          104 KLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             EEECTTSCC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             EEECCCCCc---cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            999998844   333333 77888899999998888753 57888888888888888888874333333222        


Q ss_pred             -------------------CCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          152 -------------------NSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       152 -------------------~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                                         .+|++|++++|.++ .+|..+...++.+  ..+++||
T Consensus       181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred             eeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence                               25777777777776 6777665566654  4566665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.4e-21  Score=154.98  Aligned_cols=128  Identities=18%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             ccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090           55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR  133 (186)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  133 (186)
                      +|+.|++++|.+.+..+..++.+++|++|++++|.   +.+..+. +..+++|+.|++++|.+....+..+..+++|++|
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            45555555555555556667777888888888873   3444454 6777788888888887775566777778888888


Q ss_pred             EcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      ++++|.+.+..|..+..+++|++|++++|+++ .+|......++.+  ..+++||
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCC
Confidence            88888887555667777888888888888887 6776665566654  4555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=2e-21  Score=159.14  Aligned_cols=178  Identities=20%  Similarity=0.145  Sum_probs=124.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH-HHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN-LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|.  +   ....+. .+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--L---KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--E---ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--C---CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            45666666666665555666677777777777776  3   233222 36677778888888877776667777788888


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      ++|++++|.+.......+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++| ++++
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L  530 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL  530 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence            8888888854321112223 6777888888888888876677888888888888888888887777788888888 8888


Q ss_pred             cCCcccccCChhHHHhCCC--CCCCCCCC
Q 038090          160 SSCNILGKIPTSLLIRLPP--SVALSSTP  186 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l~~--~~~l~~~~  186 (186)
                      ++|.++ .++......++.  ...+++||
T Consensus       531 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          531 ASNHIS-IILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CSSCCC-CCCGGGHHHHHTSSEEECTTCC
T ss_pred             cCCccc-ccCHhhcccCCCCCEEeCCCCC
Confidence            888888 444443334444  46667776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.4e-20  Score=140.10  Aligned_cols=156  Identities=20%  Similarity=0.158  Sum_probs=132.8

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++.+.......+..+++|++|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--L---QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--C---CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--C---CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence            68899999999987766677899999999999999  4   333445578899999999999999987788899999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+.   ...+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++++
T Consensus       137 ~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          137 YLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             EEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcCC---ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            9999999543   33334 7889999999999999986666778899999999999999994444558889999999999


Q ss_pred             CCccc
Q 038090          161 SCNIL  165 (186)
Q Consensus       161 ~n~~~  165 (186)
                      +|++.
T Consensus       214 ~N~~~  218 (270)
T 2o6q_A          214 ENPWD  218 (270)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            99985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=1.4e-21  Score=147.76  Aligned_cols=171  Identities=23%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCC--------------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTS--------------   67 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------------   67 (186)
                      ++++|+++++.+.......+.++++|+.|++++|.+..   .+..+..+.++++|++|++++|.+.              
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence            46677777777765544556677777777777776321   1222344445555555555555444              


Q ss_pred             ---------CCcc-cccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEc
Q 038090           68 ---------SAVS-PTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYL  135 (186)
Q Consensus        68 ---------~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L  135 (186)
                               +..+ ..+..+++|++|++++|   ......+. +..+++|+.|++++|.+.+ ..|..+..+++|++|++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTS---CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCC---cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence                     3222 24445555555555555   22233333 5556666666666666653 35566666677777777


Q ss_pred             CCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          136 SDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       136 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      ++|.+.+..+..+..+++|++|++++|.++ .++......++.+
T Consensus       183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L  225 (306)
T 2z66_A          183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSL  225 (306)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTC
T ss_pred             CCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccC
Confidence            777766444556666777777777777776 4444333345543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=1.4e-21  Score=160.06  Aligned_cols=173  Identities=18%  Similarity=0.097  Sum_probs=121.1

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      |+.|++++|.+... +..+..+++|+.|++++|.  +   .+..+ ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus       378 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          378 LRHLDLSFNGAIIM-SANFMGLEELQHLDFQHST--L---KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             CCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSE--E---ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccEeECCCCccccc-hhhccCCCCCCeeECCCCc--c---CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            44444444444332 2444555555555555555  2   22222 3556677777777777777766677777778888


Q ss_pred             eEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           82 YLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      +|++++|   .+.+ .+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus       452 ~L~l~~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          452 TLKMAGN---SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             EEECTTC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             EEECCCC---cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            8888887   3444 2465 788888999999988888777788888899999999999888666788888999999999


Q ss_pred             cCCcccccCChhHHHhCC-C--CCCCCCCC
Q 038090          160 SSCNILGKIPTSLLIRLP-P--SVALSSTP  186 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l~-~--~~~l~~~~  186 (186)
                      ++|+++ .+|..+. .+| .  ...+++||
T Consensus       529 ~~N~l~-~~p~~~~-~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          529 SFNRIE-TSKGILQ-HFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTSCCC-CEESCGG-GSCTTCCEEECCSCC
T ss_pred             CCCcCc-ccCHhHh-hhcccCcEEEccCCC
Confidence            999998 8888854 554 2  35677776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=154.25  Aligned_cols=169  Identities=21%  Similarity=0.132  Sum_probs=136.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|..+++|++|++++|.  +   ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  107 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--V---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT  107 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCc--c---CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence            57889999999988777889999999999999998  4   455577788999999999999998876667789999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.   +....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       108 ~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          108 KLDISENK---IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             EEECTTSC---CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             EEECCCCc---cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence            99999994   4444455 7888999999999999887777788889999999999998884444567888888888888


Q ss_pred             CCcccccCChhHHHhCCCC
Q 038090          161 SCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~~~  179 (186)
                      +|.+. .++......++.+
T Consensus       185 ~n~i~-~~~~~~~~~l~~L  202 (477)
T 2id5_A          185 HLNIN-AIRDYSFKRLYRL  202 (477)
T ss_dssp             SCCCC-EECTTCSCSCTTC
T ss_pred             CCcCc-EeChhhcccCccc
Confidence            88887 4444333344443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=5.7e-21  Score=147.12  Aligned_cols=176  Identities=20%  Similarity=0.254  Sum_probs=106.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L   80 (186)
                      +|+.|++++|.+....+..|..+++|++|++++|.  +   ....+..+.++++|++|++++|.+....+ ..+..+++|
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--L---SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc--C---CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            45666666666665555566667777777777776  3   22223336667777777777777664333 356677777


Q ss_pred             CeEeeccccccccccCC-CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-------------------
Q 038090           81 IYLSISECSSQDLFGYL-PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG-------------------  139 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------------  139 (186)
                      ++|++++|.   ....+ +. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.                   
T Consensus       152 ~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          152 QILRVGNMD---TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             CEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             cEEECCCCc---cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence            777777762   11222 33 6666777777777777665556666655555555444444                   


Q ss_pred             -----CCCC-------------------------------CchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CC
Q 038090          140 -----FSGE-------------------------------LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VA  181 (186)
Q Consensus       140 -----~~~~-------------------------------~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~  181 (186)
                           +.+.                               +|..+..+++|++|++++|+++ .+|..+...++.+  ..
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence                 3321                               1233456677888888888887 7777765566654  45


Q ss_pred             CCCCC
Q 038090          182 LSSTP  186 (186)
Q Consensus       182 l~~~~  186 (186)
                      +++||
T Consensus       308 L~~N~  312 (353)
T 2z80_A          308 LHTNP  312 (353)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            56654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=5.5e-21  Score=142.51  Aligned_cols=138  Identities=21%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG  103 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~  103 (186)
                      ++|+.|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+   ....+. +..+
T Consensus        28 ~~l~~L~ls~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l   99 (276)
T 2z62_A           28 FSTKNLDLSFNP--L---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGL   99 (276)
T ss_dssp             TTCCEEECTTCC--C---CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTC
T ss_pred             CCccEEECCCCc--c---cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc---CccChhhhcCC
Confidence            579999999999  4   344444788899999999999999877777899999999999999954   344445 8899


Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC-CCchhhhccCCCCEEeccCCcccccCChh
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPTSLGKLNSLKTFDISSCNILGKIPTS  171 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~p~~  171 (186)
                      ++|+.|++++|.+....+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.++ .++..
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~  167 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT  167 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGG
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHH
Confidence            999999999999986666679999999999999999985 36888999999999999999998 55543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=6.8e-21  Score=136.48  Aligned_cols=134  Identities=24%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG  103 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~  103 (186)
                      ++|+.|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+   ....+. +..+
T Consensus        28 ~~l~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l   99 (208)
T 2o6s_A           28 AQTTYLDLETNS--L---KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---QSLPNGVFDKL   99 (208)
T ss_dssp             TTCSEEECCSSC--C---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTC
T ss_pred             CCCcEEEcCCCc--c---CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC---CccCHhHhcCc
Confidence            345555555555  2   222222344555555555555555543334445555555555555532   211122 3455


Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccc
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILG  166 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~  166 (186)
                      ++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            555555555555543333334555555555555555552222234455555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.5e-21  Score=150.46  Aligned_cols=169  Identities=16%  Similarity=0.112  Sum_probs=142.1

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++++.......+.++++|+.|++++|.  +   .+..+..+.++++|++|++++|.+++..+..++.+++|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--I---NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--c---CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            68899999999987766789999999999999999  4   444556788999999999999999976566699999999


Q ss_pred             eEeeccccccccccCCC-C-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEe
Q 038090           82 YLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFD  158 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~  158 (186)
                      +|++++|.+..   ..+ . +..+++|+.|++++|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       128 ~L~L~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          128 FLNLLGNPYKT---LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             EEECTTCCCSS---SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             EEECCCCCCcc---cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence            99999995542   222 2 7789999999999985 5544567889999999999999999977788899999999999


Q ss_pred             ccCCcccccCChhHHHhCCCC
Q 038090          159 ISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       159 l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      +++|.+. .+|..+...++.+
T Consensus       205 l~~n~l~-~~~~~~~~~~~~L  224 (353)
T 2z80_A          205 LHMKQHI-LLLEIFVDVTSSV  224 (353)
T ss_dssp             EECSCST-THHHHHHHHTTTE
T ss_pred             CCCCccc-cchhhhhhhcccc
Confidence            9999996 8888777666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=3.4e-20  Score=141.53  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|.+..   .+..+..+.++++|+.|++++|.+.. .|..+.  ++|+
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~  195 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLT  195 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCS
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---cCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCC
Confidence            46666777776666656667777888888888777321   22445566777777777777777664 343332  6777


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.   +.+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.++..+++|++++++
T Consensus       196 ~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          196 ELHLDGNK---ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             EEECTTSC---CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             EEECCCCc---CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence            77777773   3333344 777788888888888887666667778888888888888888 777778888888888888


Q ss_pred             CCcccccCChhH
Q 038090          161 SCNILGKIPTSL  172 (186)
Q Consensus       161 ~n~~~~~~p~~~  172 (186)
                      +|+++ .++...
T Consensus       272 ~N~i~-~~~~~~  282 (330)
T 1xku_A          272 NNNIS-AIGSND  282 (330)
T ss_dssp             SSCCC-CCCTTS
T ss_pred             CCcCC-ccChhh
Confidence            88887 555433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=8.6e-22  Score=162.50  Aligned_cols=120  Identities=20%  Similarity=0.346  Sum_probs=84.3

Q ss_pred             hhHHHHcCCccceEEeccccCCCC-----------------cccccC--CCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090           46 LSNLAKKLTNLIEIYLIDVDTSSA-----------------VSPTLT--NLSSLIYLSISECSSQDLFGYLPK-SQKGSL  105 (186)
Q Consensus        46 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~  105 (186)
                      +|..+.++++|++|++++|.+++.                 .|+.++  .+++|++|++++|   .+.+.+|. ++.+++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC---PNLTKLPTFLKALPE  274 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC---TTCSSCCTTTTTCSS
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC---cCCccChHHHhcCCC
Confidence            566677777777777777777764                 666776  7777777777777   55566666 777777


Q ss_pred             ccEEEccCCc-CCC-CCCcccCCC------CCCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCC
Q 038090          106 LEDLRLSFTK-FLG-KIPPSLGNL------TNLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       106 L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      |+.|++++|. +.+ .+|..++.+      ++|++|++++|.++ .+|.  .++.+++|++|++++|.++|.+|
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            7777777776 655 466655554      66777777777776 6666  66667777777777777766666

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=7.7e-21  Score=154.38  Aligned_cols=175  Identities=23%  Similarity=0.247  Sum_probs=105.3

Q ss_pred             CccceecccccccCcC--hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCC
Q 038090            2 SQRKINEQDFGVETSN--ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLS   78 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~   78 (186)
                      +|+.|++++|.+....  +..+..+++|+.|++++|.  +    ..++..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~--l----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG--V----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS--E----EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCc--c----ccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence            4667777777665432  4566777777777777777  2    2233335566667777777666655443 3566666


Q ss_pred             CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCE
Q 038090           79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKT  156 (186)
Q Consensus        79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~  156 (186)
                      +|++|++++|   ......+. +..+++|+.|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus       422 ~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          422 NLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCCEEECTTS---CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEeCcCC---cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            6777777666   33334444 566666666666666654 245666666666666666666666444556666666666


Q ss_pred             EeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          157 FDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       157 l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      |++++|.++ .+|......++.+  ..+++||
T Consensus       499 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCCcCC-CCCHHHhhcccCCcEEEecCCc
Confidence            666666666 4444433345543  3444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=2.8e-21  Score=146.62  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             CccceecccccccCcChhhH--HhhcccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCccccc
Q 038090            2 SQRKINEQDFGVETSNISRV--ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVSPTL   74 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~   74 (186)
                      +|++|++++|.+....+..+  ..+++|+.|++++|.  +   .+. |..+..+     ++|++|++++|.+.+..+..|
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l---~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--W---ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--C---SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--C---cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            57778888888775555554  678888888888887  3   232 5556655     788888888888777666777


Q ss_pred             CCCCCCCeEeeccccccccccCCCC-C--CCCCcccEEEccCCcCCCC--CC-cccCCCCCCCEEEcCCCcCCCCCc-hh
Q 038090           75 TNLSSLIYLSISECSSQDLFGYLPK-S--QKGSLLEDLRLSFTKFLGK--IP-PSLGNLTNLEDRYLSDNGFSGELP-TS  147 (186)
Q Consensus        75 ~~l~~L~~L~l~~~~l~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~--~~-~~~~~l~~L~~L~L~~n~~~~~~~-~~  147 (186)
                      +.+++|++|++++|.+.... .++. +  ..+++|+.|++++|.+...  .+ ..+..+++|++|++++|.+.+..| ..
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            78888888888887432110 0111 2  4555566666665555411  11 112244555555555555553332 22


Q ss_pred             hhccCCCCEEeccCCcccccCChhH
Q 038090          148 LGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       148 ~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      +..+++|++|++++|.++ .+|..+
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             hhhcCCCCEEECCCCccC-hhhhhc
Confidence            333445555555555554 444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=9.9e-21  Score=154.99  Aligned_cols=163  Identities=21%  Similarity=0.105  Sum_probs=115.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|.++++|+.|++++|.  +   ....+..|.++++|++|++++|.+.+..|..|+++++|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  107 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--I---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE  107 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--c---cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence            46778888887776666677788888888888887  4   444455677788888888888887776677788888888


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC----C
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL----K  155 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L----~  155 (186)
                      +|++++|.+   ....+. ++.+++|+.|++++|.+.+ .+|..++.+++|++|++++|.+.+..+..++.+++|    .
T Consensus       108 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          108 NLVAVETKL---ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             EEECTTSCC---CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred             EEEccCCcc---ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence            888888743   333333 7777788888888887764 457777888888888888887775545555555444    3


Q ss_pred             EEeccCCcccccCChhHH
Q 038090          156 TFDISSCNILGKIPTSLL  173 (186)
Q Consensus       156 ~l~l~~n~~~~~~p~~~~  173 (186)
                      ++++++|.+. .++....
T Consensus       185 ~L~l~~n~l~-~~~~~~~  201 (606)
T 3vq2_A          185 SLDMSLNPID-FIQDQAF  201 (606)
T ss_dssp             EEECTTCCCC-EECTTTT
T ss_pred             eeeccCCCcc-eeCcccc
Confidence            6777777776 5555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.83  E-value=1.8e-20  Score=148.55  Aligned_cols=137  Identities=19%  Similarity=0.144  Sum_probs=119.3

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG  103 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~  103 (186)
                      ++|+.|++++|.  +   .+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+   .+..+. +..+
T Consensus       275 ~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l  346 (455)
T 3v47_A          275 SGVKTCDLSKSK--I---FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL---GSIDSRMFENL  346 (455)
T ss_dssp             SCCCEEECCSSC--C---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CEECGGGGTTC
T ss_pred             cCceEEEecCcc--c---cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc---CCcChhHhcCc
Confidence            578888888888  4   555677788999999999999999987788999999999999999944   444455 7899


Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      ++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+++++++|++++..|
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999987778899999999999999999995444557899999999999999998877

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=1e-19  Score=150.81  Aligned_cols=163  Identities=22%  Similarity=0.163  Sum_probs=139.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++++....+..|.++++|+.|++++|.  +   .+..+..+.++++|++|++++|.+....+..|+.+++|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--I---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--C---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--c---CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            57899999999988877789999999999999999  5   566677899999999999999999876666899999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhh--ccCCCCEEe
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLG--KLNSLKTFD  158 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~l~  158 (186)
                      +|++++|.+   .+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.  .+++|++|+
T Consensus       101 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          101 ELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             EEECCSSCC---CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             EEECCCCcc---CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            999999944   443445 88999999999999999888888899999999999999999965555554  558999999


Q ss_pred             ccCCcccccCChhH
Q 038090          159 ISSCNILGKIPTSL  172 (186)
Q Consensus       159 l~~n~~~~~~p~~~  172 (186)
                      +++|.+++..|..+
T Consensus       178 L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          178 LSSNQIKEFSPGCF  191 (680)
T ss_dssp             CTTCCCCCBCTTGG
T ss_pred             CCCCcccccChhhh
Confidence            99999985444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=9.7e-20  Score=136.94  Aligned_cols=164  Identities=21%  Similarity=0.190  Sum_probs=136.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.++++++++..+ +..+  .++++.|++++|.  +   ....+..+..+++|+.|++++|.+++..+  .+.+++|+
T Consensus        11 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G           11 SHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENL--L---YTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             TCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSC--C---SEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             CccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCc--C---CccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            578899999988755 3333  2689999999999  4   45556778999999999999999886433  37899999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+.    .+|. +..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        81 ~L~Ls~N~l~----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           81 TLDLSHNQLQ----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             EEECCSSCCS----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             EEECCCCcCC----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            9999999653    5566 7889999999999999996666889999999999999999994444557889999999999


Q ss_pred             CCcccccCChhHHHhCCCCC
Q 038090          161 SCNILGKIPTSLLIRLPPSV  180 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~~~~  180 (186)
                      +|+++ .+|..+...++.+.
T Consensus       157 ~N~l~-~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          157 NNNLT-ELPAGLLNGLENLD  175 (290)
T ss_dssp             TSCCS-CCCTTTTTTCTTCC
T ss_pred             CCcCC-ccCHHHhcCcCCCC
Confidence            99998 89988877777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=4.7e-20  Score=140.89  Aligned_cols=80  Identities=11%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |++|++++|.+....+..+..+++|+.|++++|.  +    ..+|..+.  ++|++|++++|.+....+..|..+++|++
T Consensus        80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l----~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH--L----VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC--C----CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             CcEEECCCCccCccCHhHhhCcCCCCEEECCCCc--C----CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            3444444444443334444444444444444444  1    11111111  33444444444444333344666667777


Q ss_pred             Eeeccccc
Q 038090           83 LSISECSS   90 (186)
Q Consensus        83 L~l~~~~l   90 (186)
                      |++++|.+
T Consensus       152 L~l~~n~l  159 (332)
T 2ft3_A          152 IEMGGNPL  159 (332)
T ss_dssp             EECCSCCC
T ss_pred             EECCCCcc
Confidence            77766654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=3.8e-21  Score=155.72  Aligned_cols=170  Identities=17%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|++++|.+....+..|..+++|++|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|+.+++|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--I---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCC--c---CccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            57888899888877767778888999999999988  4   444556678888899999988888877666788888899


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      +|++++|.+...  ..|. +..+++|+.|++++|...+.+| ..+..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus       102 ~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          102 YLNLMGNPYQTL--GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             EEECTTCCCSSS--CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             EEECCCCccccc--chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            999888854311  3344 7788888888888887443444 56788888888888888888667777777777777777


Q ss_pred             cCCcccccCChhHHHhCCCC
Q 038090          160 SSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       160 ~~n~~~~~~p~~~~~~l~~~  179 (186)
                      ++|.+. .+|..+...++.+
T Consensus       180 ~~n~~~-~~~~~~~~~l~~L  198 (549)
T 2z81_A          180 HLSESA-FLLEIFADILSSV  198 (549)
T ss_dssp             ECSBST-THHHHHHHSTTTB
T ss_pred             ccCccc-ccchhhHhhcccc
Confidence            777665 6666555445544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=4.8e-20  Score=131.07  Aligned_cols=130  Identities=18%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-C
Q 038090           22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S  100 (186)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~  100 (186)
                      +.+++|+.|++++|.  +    ..++ .+..+++|++|++++|.+..  ++.+..+++|++|++++|.   +....+. +
T Consensus        41 ~~l~~L~~L~l~~n~--i----~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~---l~~~~~~~l  108 (197)
T 4ezg_A           41 AQMNSLTYITLANIN--V----TDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKD---VTSDKIPNL  108 (197)
T ss_dssp             HHHHTCCEEEEESSC--C----SCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTT---CBGGGSCCC
T ss_pred             hhcCCccEEeccCCC--c----cChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCc---cCcccChhh
Confidence            455556666666655  2    2333 34555566666666554331  2345555666666666652   2222233 5


Q ss_pred             CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhccCCCCEEeccCCccc
Q 038090          101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.++
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            555556666666665554445555555666666666655 33 443 3555556666666666555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=1.4e-19  Score=149.95  Aligned_cols=182  Identities=16%  Similarity=0.103  Sum_probs=125.9

Q ss_pred             CccceecccccccCcC-hhhHHhhcccCeeeCCCCCcc----------------------ccccccchhHHHHcCCccce
Q 038090            2 SQRKINEQDFGVETSN-ISRVARALQLGVLDLSYNHFA----------------------FKLQKSGLSNLAKKLTNLIE   58 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~~~l~~L~~   58 (186)
                      +|+.|++++|.+.... ...+..+++|++|++++|.+.                      + ...+..|..+..+++|+.
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC-BCTTCSSCTTTTCTTCCE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc-cccccCCcccccCCCCCE
Confidence            4566666666654322 244555666666666665521                      1 001345566777888888


Q ss_pred             EEeccccCCCCcccccCCCCCCCeEeeccccccccccC-----CCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCE
Q 038090           59 IYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGY-----LPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED  132 (186)
Q Consensus        59 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  132 (186)
                      |++++|.+++..+..|..+++|++|++++|.++.....     .+. +..+++|+.|++++|.+....+..|..+++|++
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            88888888877677788889999999998866543221     112 677888999999999988444456888999999


Q ss_pred             EEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHH-hCCC--CCCCCCCC
Q 038090          133 RYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLI-RLPP--SVALSSTP  186 (186)
Q Consensus       133 L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~-~l~~--~~~l~~~~  186 (186)
                      |++++|.++ .+| ..+..+++|++|++++|.++ .++..... .++.  ...+++||
T Consensus       565 L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          565 IDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHHHHHTTCSEEECTTCC
T ss_pred             eECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCC-ccChhHhcccccccCEEEccCCC
Confidence            999999999 555 44678899999999999998 56665443 4554  35677776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=2.8e-21  Score=146.63  Aligned_cols=172  Identities=19%  Similarity=0.205  Sum_probs=131.0

Q ss_pred             CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--ccccc
Q 038090            2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTL   74 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~   74 (186)
                      +|+.|++++|.+... +..+..+     ++|++|++++|.  +   ....+..+..+++|++|++++|.+.+.  .+..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH--S---LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS--C---CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC--C---ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            678899999988876 6777777     899999999998  4   455556788899999999999987653  23333


Q ss_pred             --CCCCCCCeEeeccccccccccCCC-C-CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhh
Q 038090           75 --TNLSSLIYLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLG  149 (186)
Q Consensus        75 --~~l~~L~~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~  149 (186)
                        ..+++|++|++++|.++... .++ . +..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence              78899999999999654221 222 2 4577889999999999886654 44556789999999999998 8887665


Q ss_pred             ccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          150 KLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       150 ~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                        ++|++|++++|+++ .+|. + ..++.+  ..+++||
T Consensus       274 --~~L~~L~Ls~N~l~-~~p~-~-~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLD-RNPS-P-DELPQVGNLSLKGNP  307 (312)
T ss_dssp             --SEEEEEECCSSCCC-SCCC-T-TTSCEEEEEECTTCT
T ss_pred             --CCceEEECCCCCCC-CChh-H-hhCCCCCEEeccCCC
Confidence              78999999999998 6666 3 366654  5556664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=5.8e-20  Score=143.22  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=14.5

Q ss_pred             cCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090           52 KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC   88 (186)
Q Consensus        52 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (186)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            3333444444444333333333333444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.3e-19  Score=131.84  Aligned_cols=153  Identities=16%  Similarity=0.133  Sum_probs=123.2

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL   83 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   83 (186)
                      +.++.+++++..+ +..+  .++|+.|++++|.  +   .+..+..+..+++|+.|++++|.+....+..|..+++|++|
T Consensus        22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQ--I---TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSSC--C---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCc--c---CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            4567777766544 2322  3889999999999  4   45556778899999999999999987666778999999999


Q ss_pred             eeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      ++++|.+   ....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+++++++|
T Consensus        94 ~Ls~N~l---~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           94 DLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             ECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ECCCCcC---CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            9999954   333334 678999999999999998 78888899999999999999999444456888999999999999


Q ss_pred             cccccC
Q 038090          163 NILGKI  168 (186)
Q Consensus       163 ~~~~~~  168 (186)
                      ++....
T Consensus       170 ~~~c~c  175 (229)
T 3e6j_A          170 PWDCEC  175 (229)
T ss_dssp             CBCTTB
T ss_pred             CccCCc
Confidence            987443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=2.6e-19  Score=139.54  Aligned_cols=131  Identities=14%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.++++++.+.......+..+++|+.|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|+.+++|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--I---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCc--c---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            34555666665554444445566666666666665  2   222233455556666666666665555455555666666


Q ss_pred             eEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090           82 YLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      +|++++|.+.    .+|.  +..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus       121 ~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          121 VLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             EEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             EEECCCCccC----cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            6666665332    2222  345555555555555555444444555555555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=7.1e-20  Score=141.60  Aligned_cols=170  Identities=24%  Similarity=0.267  Sum_probs=134.6

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHH-cCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +.++++++++... +..+  ...++.|++++|.  +   ....+..+. .+++|+.|++++|.+....+..|..+++|++
T Consensus        21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~--l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNN--L---SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSC-CSSC--CTTCSEEECCSSC--C---CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCcc-CccC--CCCCCEEECCCCC--C---CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence            4577777777654 3333  2468999999999  4   444444565 8899999999999999877788999999999


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhh----hccCCCCEE
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSL----GKLNSLKTF  157 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~~~L~~l  157 (186)
                      |++++|.+.   ...+. +..+++|+.|++++|.+....+..|..+++|++|++++|.+. .+|..+    ..+++|++|
T Consensus        93 L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           93 LDLSSNHLH---TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             EECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEE
T ss_pred             EECCCCcCC---cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEE
Confidence            999999543   33334 788999999999999998777888999999999999999999 566543    578999999


Q ss_pred             eccCCcccccCChhHHHhCCC----CCCCCCCC
Q 038090          158 DISSCNILGKIPTSLLIRLPP----SVALSSTP  186 (186)
Q Consensus       158 ~l~~n~~~~~~p~~~~~~l~~----~~~l~~~~  186 (186)
                      ++++|.++ .+|......++.    .+.+++||
T Consensus       169 ~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          169 DLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             ECCCCCCC-ccCHHHhhhccHhhcceEEecCCC
Confidence            99999998 888777667774    36788887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.2e-20  Score=137.93  Aligned_cols=164  Identities=13%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCC-ccccccccchhHHHHcCCccceEEecc-ccCCCCcccccCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNH-FAFKLQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~   79 (186)
                      +++.|+++++++.......|..+++|+.|++++|. +     ....+..+.++++|++|++++ |.+....+..|..+++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            57888899988887766678889999999999985 2     222233567788899999988 7877666667888888


Q ss_pred             CCeEeeccccccccccCCCCCCCCCccc---EEEccCC-cCCCCCCcccCCCCCCC-EEEcCCCcCCCCCchhhhccCCC
Q 038090           80 LIYLSISECSSQDLFGYLPKSQKGSLLE---DLRLSFT-KFLGKIPPSLGNLTNLE-DRYLSDNGFSGELPTSLGKLNSL  154 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~L  154 (186)
                      |++|++++|.+..    +|.+..+++|+   .|++++| .+....+..+..+++|+ ++++++|.++ .+|......++|
T Consensus       107 L~~L~l~~n~l~~----lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L  181 (239)
T 2xwt_C          107 LKFLGIFNTGLKM----FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL  181 (239)
T ss_dssp             CCEEEEEEECCCS----CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred             CCEEeCCCCCCcc----ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence            8888888885432    33345555555   7777777 66544444566667777 7777777666 554433233566


Q ss_pred             CEEeccCCc-ccccCChhHHHhC
Q 038090          155 KTFDISSCN-ILGKIPTSLLIRL  176 (186)
Q Consensus       155 ~~l~l~~n~-~~~~~p~~~~~~l  176 (186)
                      +++++++|+ ++ .+|......+
T Consensus       182 ~~L~L~~n~~l~-~i~~~~~~~l  203 (239)
T 2xwt_C          182 DAVYLNKNKYLT-VIDKDAFGGV  203 (239)
T ss_dssp             EEEECTTCTTCC-EECTTTTTTC
T ss_pred             CEEEcCCCCCcc-cCCHHHhhcc
Confidence            666666663 65 5555444344

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=6.6e-21  Score=144.45  Aligned_cols=156  Identities=19%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             CccceecccccccCcChhhH--HhhcccCeeeCCCCCccccccccchh----HHHHcCCccceEEeccccCCCCcccccC
Q 038090            2 SQRKINEQDFGVETSNISRV--ARALQLGVLDLSYNHFAFKLQKSGLS----NLAKKLTNLIEIYLIDVDTSSAVSPTLT   75 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~   75 (186)
                      +|++|++++|.+....+..+  ..+++|++|++++|.  +   .+..+    ..+..+++|++|++++|.+.+..+..++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i---~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--W---ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--C---SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--c---cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            47888888888876666666  778888888888888  3   22211    2344678888888888888777777888


Q ss_pred             CCCCCCeEeeccccccccccCC-CC-CCCC---------------------------CcccEEEccCCcCCCCCCcccCC
Q 038090           76 NLSSLIYLSISECSSQDLFGYL-PK-SQKG---------------------------SLLEDLRLSFTKFLGKIPPSLGN  126 (186)
Q Consensus        76 ~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~  126 (186)
                      .+++|++|++++|.+....+.. +. +..+                           ++|+.|++++|.+.+..|..+..
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence            8888888888888542110000 01 1233                           44555555555555444444444


Q ss_pred             C---CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          127 L---TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       127 l---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +   ++|++|++++|.++ .+|..+.  ++|++|++++|+++
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            4   45555666555555 4454442  45666666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=5.9e-20  Score=147.97  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccc-ccCCCCCCC
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLI   81 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~   81 (186)
                      |+.|++++|.+....+..+..+++|+.|++++|.+..   ...+|..+..+++|++|++++|.+.+..|. .+..+++|+
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE---LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB---HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc---cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4445555555444344444555555555555555110   113334445555555555555555442332 244455555


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEec
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~l  159 (186)
                      +|++++|.   +.+.+|. +.  ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+++++
T Consensus       403 ~L~Ls~N~---l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          403 SLNMSSNI---LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             EEECCSSC---CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             EEECcCCC---CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            55555552   2222222 11  34555555555554 44444445555555555555555 34433 445555555555


Q ss_pred             cCCccc
Q 038090          160 SSCNIL  165 (186)
Q Consensus       160 ~~n~~~  165 (186)
                      ++|+++
T Consensus       476 ~~N~~~  481 (520)
T 2z7x_B          476 HTNPWD  481 (520)
T ss_dssp             CSSCBC
T ss_pred             cCCCCc
Confidence            555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=4.7e-20  Score=151.00  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=134.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|.++++|++|++++|.  +   ....|..|.++++|++|++++|.+.+..|..|+.+++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--I---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCc--c---ceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence            57889999999988778889999999999999998  4   555677789999999999999999887788999999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCC--EEe
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLK--TFD  158 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~--~l~  158 (186)
                      +|++++|.+.   ...+. +..+++|+.|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+  +++
T Consensus       109 ~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          109 HLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN  185 (606)
T ss_dssp             EEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred             EeeccccCcc---cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence            9999999543   32234 78889999999999998864434445589999999999999966677788999999  899


Q ss_pred             ccCCcccccCChh
Q 038090          159 ISSCNILGKIPTS  171 (186)
Q Consensus       159 l~~n~~~~~~p~~  171 (186)
                      +++|.+.+..|..
T Consensus       186 l~~n~l~~~~~~~  198 (606)
T 3t6q_A          186 LNGNDIAGIEPGA  198 (606)
T ss_dssp             CTTCCCCEECTTT
T ss_pred             cCCCccCccChhH
Confidence            9999998544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=7.1e-20  Score=150.05  Aligned_cols=49  Identities=22%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090          122 PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       122 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+
T Consensus       272 ~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~  320 (597)
T 3oja_B          272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ  320 (597)
T ss_dssp             GGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             HHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCccc
Confidence            33333344444444444333 22333333444444444444443 444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=4.6e-20  Score=147.18  Aligned_cols=128  Identities=16%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|++++|.+....+..|.++++|+.|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--L---KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCc--C---CccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            56777777777776666677777777777777777  3   222223356667777777777776665566666666777


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCC
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSD  137 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~  137 (186)
                      +|++++|.+.   ...+. +..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       132 ~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          132 SLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             EEEECCTTCC---EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             EEECCCCccc---eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            7777666332   22233 45555555555555555432222333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3.1e-19  Score=146.24  Aligned_cols=131  Identities=12%  Similarity=0.057  Sum_probs=61.4

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      ++.++++++.+....+..+..+++|+.|++++|.  +   ....+..+..+++|+.|++++|.+.+..+..|+.+++|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--I---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--C---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            3444555554444434444555555555555555  2   2222334445555555555555555444444555555555


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      |++++|.+.   ...+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       128 L~L~~n~l~---~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          128 LVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             EECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EEeeCCCCC---CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            555555221   11112 344455555555555544444444444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=8.6e-20  Score=139.44  Aligned_cols=157  Identities=16%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|++++|.+.......+..+++|+.|++++|.+..   .+..+..+..+ +|+.|++++|.+.+ .|..+.  ++|++
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~  197 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE  197 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence            4444444444443333334445555555555554110   01222223333 44444444444332 222221  45666


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      |++++|.   +....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus       198 L~l~~n~---i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          198 LHLDHNK---IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CBCCSSC---CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred             EECCCCc---CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence            6666663   2333334 667777788888887777666667777788888888888777 7777777778888888888


Q ss_pred             CcccccCChh
Q 038090          162 CNILGKIPTS  171 (186)
Q Consensus       162 n~~~~~~p~~  171 (186)
                      |+++ .++..
T Consensus       274 N~l~-~~~~~  282 (332)
T 2ft3_A          274 NNIT-KVGVN  282 (332)
T ss_dssp             SCCC-BCCTT
T ss_pred             CCCC-ccChh
Confidence            8877 55543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.9e-19  Score=129.21  Aligned_cols=150  Identities=18%  Similarity=0.127  Sum_probs=123.3

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL   83 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   83 (186)
                      +.++++++++..+ +..+.  ++++.|++++|.  +   ....+..+..+++|+.|++++|.+.+..|..|..+++|++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~--i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNT--I---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSC--C---CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCc--C---CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            4567777776644 33332  689999999999  4   34344468889999999999999998778899999999999


Q ss_pred             eeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           84 SISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        84 ~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      ++++|.++    .+|.  +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+++++++
T Consensus        86 ~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           86 VLYGNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             ECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            99999553    3333  67899999999999999977788899999999999999999955556688899999999999


Q ss_pred             Cccc
Q 038090          162 CNIL  165 (186)
Q Consensus       162 n~~~  165 (186)
                      |++.
T Consensus       162 N~~~  165 (220)
T 2v9t_B          162 NPFI  165 (220)
T ss_dssp             SCEE
T ss_pred             CCcC
Confidence            9885

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=1.4e-19  Score=149.40  Aligned_cols=172  Identities=16%  Similarity=0.163  Sum_probs=120.0

Q ss_pred             CccceecccccccCcChhhHH-------hhcccCeeeCCCCCccccccccchhH-HHHcCCccceEEeccccCCCCcccc
Q 038090            2 SQRKINEQDFGVETSNISRVA-------RALQLGVLDLSYNHFAFKLQKSGLSN-LAKKLTNLIEIYLIDVDTSSAVSPT   73 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   73 (186)
                      +|+.|++++|.+....+..+.       .+.+|+.|++++|.  +   . .+|. .+..+++|+.|++++|.+....+..
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l---~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~  476 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--I---S-KFPKELFSTGSPLSSINLMGNMLTEIPKNS  476 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--C---C-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--c---C-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence            356666666666555455555       56677777777777  3   3 3443 3455788888888888877433333


Q ss_pred             cCCC-------CCCCeEeeccccccccccCCCC-CC--CCCcccEEEccCCcCCCCCCcccCCCCCCCEEEc------CC
Q 038090           74 LTNL-------SSLIYLSISECSSQDLFGYLPK-SQ--KGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL------SD  137 (186)
Q Consensus        74 ~~~l-------~~L~~L~l~~~~l~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L------~~  137 (186)
                      +...       ++|++|++++|.++    .+|. +.  .+++|+.|++++|.+.+ +|..+..+++|++|++      ++
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT----KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC----BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             hccccccccccCCccEEECcCCcCC----ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            3322       27888888888443    4565 54  78888888888888885 7888888888888888      45


Q ss_pred             CcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCCCCCC
Q 038090          138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP  186 (186)
Q Consensus       138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l~~~~  186 (186)
                      |.+.+.+|..++.+++|++|++++|.+ +.+|..+.. --....+++||
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~-~L~~L~Ls~N~  598 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITP-NISVLDIKDNP  598 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCT-TCCEEECCSCT
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhC-cCCEEECcCCC
Confidence            666777888888888899999998888 488887662 22345666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=1.3e-19  Score=138.36  Aligned_cols=74  Identities=26%  Similarity=0.230  Sum_probs=53.4

Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.++. .++.+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L  265 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYI  265 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCc
Confidence            45666666666666555667777888888888888887555556778888888888888887 8887765 45544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=6.9e-20  Score=149.05  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=97.4

Q ss_pred             HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--cccccCCCCCCCeEeeccccccccccCCCC
Q 038090           22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTLTNLSSLIYLSISECSSQDLFGYLPK   99 (186)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~   99 (186)
                      ..+++|+.|++++|.  +   .+..+..+..+++|+.|++++|.+.+.  .|..+..+++|++|++++|.   +.+.+|.
T Consensus       350 ~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~---l~~~~~~  421 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV--F---TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS---LNSHAYD  421 (562)
T ss_dssp             SSCCCCCEEECCSSC--C---CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC---CBSCCSS
T ss_pred             cCCCCceEEECCCCc--c---ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc---CCCccCh
Confidence            456677777777777  3   444555666677777777777776652  23456677777777777773   3333343


Q ss_pred             --CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCC
Q 038090          100 --SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP  177 (186)
Q Consensus       100 --~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~  177 (186)
                        +..+++|+.|++++|.+.+..|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|......++
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  497 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT  497 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence              55666777777777776554444433  56777777777777 66666667777777777777776 67766434555


Q ss_pred             CC--CCCCCCC
Q 038090          178 PS--VALSSTP  186 (186)
Q Consensus       178 ~~--~~l~~~~  186 (186)
                      .+  ..+++||
T Consensus       498 ~L~~L~l~~N~  508 (562)
T 3a79_B          498 SLQYIWLHDNP  508 (562)
T ss_dssp             TCCCEECCSCC
T ss_pred             CCCEEEecCCC
Confidence            54  4455655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=5.4e-19  Score=127.79  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=127.1

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +.++++++++..+ +..+  ...++.|++++|.  +   ....+ ..+..+++|+.|++++|.+++..+..|..+++|++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~--l---~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNE--F---TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSC--C---CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCc--C---CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            4678888887654 3333  3467899999999  3   33222 34788999999999999999877778999999999


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      |++++|.+   ....+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+++++++
T Consensus        86 L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           86 ILLTSNRL---ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             EECCSSCC---CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCcc---CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            99999954   444445 78899999999999999977788999999999999999999966688899999999999999


Q ss_pred             CcccccCC
Q 038090          162 CNILGKIP  169 (186)
Q Consensus       162 n~~~~~~p  169 (186)
                      |++....+
T Consensus       163 N~l~c~c~  170 (220)
T 2v70_A          163 NPFNCNCY  170 (220)
T ss_dssp             CCEECSGG
T ss_pred             cCCcCCCc
Confidence            99975444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.8e-20  Score=140.11  Aligned_cols=170  Identities=14%  Similarity=0.092  Sum_probs=108.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC-------------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS-------------   68 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------   68 (186)
                      +|++|++++|.+....+..+..+++|+.|++++|.  +   .+..+  +..+++|++|++++|.+.+             
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--L---YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--C---EEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--C---Ccchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence            57888888888887777788888888888888888  3   22222  5666666666666665432             


Q ss_pred             ---------------------------CcccccCCCCCCCeEeeccccccccccCCCC-C-CCCCcccEEEccCCcCCCC
Q 038090           69 ---------------------------AVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S-QKGSLLEDLRLSFTKFLGK  119 (186)
Q Consensus        69 ---------------------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~  119 (186)
                                                 ..+..+..+++|++|++++|.+.   ...+. + ..+++|+.|++++|.+...
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC---EEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC---cccHHHHhhccCcCCEEECCCCcCccc
Confidence                                       22334444555666666665332   22222 2 3456666666666666532


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          120 IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       120 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                       +. ...+++|++|++++|.+. .++..+..+++|++|++++|.++ .+|..+. .++.+  ..+++||
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~  248 (317)
T 3o53_A          185 -KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNG  248 (317)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCC
T ss_pred             -cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCC
Confidence             22 224677778888888777 55666778888888888888887 7777654 44543  4455554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.9e-20  Score=141.91  Aligned_cols=153  Identities=20%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH--HHHcCCccceEEeccccCCCCccc----ccC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN--LAKKLTNLIEIYLIDVDTSSAVSP----TLT   75 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~   75 (186)
                      +|++|++++|.+....+..+..+++|++|++++|.+..   ...++.  .+..+++|++|++++|.++. .+.    .++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG---ERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH---HHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc---chhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            57788888888877666777888888888888887210   111221  23567888888888888763 232    356


Q ss_pred             CCCCCCeEeeccccccccccCCCC-CCCC---CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhcc
Q 038090           76 NLSSLIYLSISECSSQDLFGYLPK-SQKG---SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKL  151 (186)
Q Consensus        76 ~l~~L~~L~l~~~~l~~~~~~~~~-~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  151 (186)
                      .+++|++|++++|.   +.+..|. +..+   ++|+.|++++|.+. .+|..+.  ++|++|++++|.++ .+|. +..+
T Consensus       222 ~l~~L~~L~Ls~N~---l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l  293 (310)
T 4glp_A          222 AGVQPHSLDLSHNS---LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDEL  293 (310)
T ss_dssp             HTCCCSSEECTTSC---CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSC
T ss_pred             cCCCCCEEECCCCC---CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhC
Confidence            78899999999994   4444454 4444   69999999999998 6787765  89999999999999 4454 6788


Q ss_pred             CCCCEEeccCCcccc
Q 038090          152 NSLKTFDISSCNILG  166 (186)
Q Consensus       152 ~~L~~l~l~~n~~~~  166 (186)
                      ++|++|++++|++++
T Consensus       294 ~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          294 PEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCSCEECSSTTTSC
T ss_pred             CCccEEECcCCCCCC
Confidence            999999999999973

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.4e-18  Score=124.31  Aligned_cols=158  Identities=18%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++++.......+..+++|++|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--L---QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--C---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--c---CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence            57899999999987766778899999999999999  4   333344568899999999999999977677789999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +|++++|.+   ....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+       .+++|+.++++
T Consensus       104 ~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~  173 (208)
T 2o6s_A          104 ELALNTNQL---QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW  173 (208)
T ss_dssp             EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred             EEEcCCCcC---cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence            999999954   333344 7889999999999999986666668899999999999997774       35678999999


Q ss_pred             CCcccccCChhHHH
Q 038090          161 SCNILGKIPTSLLI  174 (186)
Q Consensus       161 ~n~~~~~~p~~~~~  174 (186)
                      .|.++|.+|.+++.
T Consensus       174 ~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          174 INKHSGVVRNSAGS  187 (208)
T ss_dssp             HHHCTTTBBCTTSS
T ss_pred             HHhCCceeeccCcc
Confidence            99999999998873

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.1e-19  Score=145.78  Aligned_cols=170  Identities=14%  Similarity=0.088  Sum_probs=106.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCC--------------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTS--------------   67 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------------   67 (186)
                      +|+.|++++|.+....+..|..+++|+.|++++|.  +   .+..+  +..+++|++|++++|.+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l---~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--L---YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--C---EEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--C---CCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            57889999998887777788889999999999998  3   22222  556666666665555433              


Q ss_pred             --------------------------CCcccccCCCCCCCeEeeccccccccccCCCC-CC-CCCcccEEEccCCcCCCC
Q 038090           68 --------------------------SAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ-KGSLLEDLRLSFTKFLGK  119 (186)
Q Consensus        68 --------------------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~  119 (186)
                                                +..|..++.+++|++|++++|.   +.+..|. +. .+++|+.|++++|.+.+.
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE---IDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC---CCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC---CCCcChHHHhhhCCcccEEecCCCccccc
Confidence                                      3333444555555566665552   2232333 32 455666666666665532


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          120 IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       120 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                       +. ...+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .++.+  ..+++||
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~l~~N~  248 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNG  248 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCC
T ss_pred             -cc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccchhhc-cCCCCCEEEcCCCC
Confidence             21 234677777777777777 45555777788888888888887 5776654 34443  4455554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=145.83  Aligned_cols=158  Identities=22%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|+.+++|+.|++++|.  +   ....+..+.++++|++|++++|.+.+..+..|+.+++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCc--C---CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            57788888888877767788888899999999888  4   444455678888899999988888876677888888899


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC----C
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL----K  155 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L----~  155 (186)
                      +|++++|.+.   ...+. ++.+++|+.|++++|.+.. .+|..++.+++|++|++++|.+.+..+..++.+++|    .
T Consensus       104 ~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          104 KLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             EEECTTSCCC---CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred             cccccccccc---cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence            9998888443   22222 7788888899998888875 368888888889999999888885556667777777    7


Q ss_pred             EEeccCCccccc
Q 038090          156 TFDISSCNILGK  167 (186)
Q Consensus       156 ~l~l~~n~~~~~  167 (186)
                      ++++++|.+.+.
T Consensus       181 ~L~l~~n~l~~~  192 (570)
T 2z63_A          181 SLDLSLNPMNFI  192 (570)
T ss_dssp             EEECTTCCCCEE
T ss_pred             hcccCCCCceec
Confidence            888888888733

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=9.8e-19  Score=141.58  Aligned_cols=172  Identities=23%  Similarity=0.214  Sum_probs=97.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHH---HHcCCccceEEeccccCCCCcc--cccCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNL---AKKLTNLIEIYLIDVDTSSAVS--PTLTN   76 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~~~   76 (186)
                      +|++|+++++.+.......+..+++|+.|++++|.  +   .+.++..   +..+++|+.|++++|.+++..+  ..+..
T Consensus       311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~--l---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL--M---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC--C---CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             cceEEEeccCccccCCHHHHhcCccccEEEccCCc--c---ccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            35566666666553322223466777777777776  3   3333221   3445566666666665553221  33555


Q ss_pred             CCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc------------------cCCCCCCCEEEcCC
Q 038090           77 LSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS------------------LGNLTNLEDRYLSD  137 (186)
Q Consensus        77 l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~l~~L~~L~L~~  137 (186)
                      +++|++|++++|.++    .+|. +..+++|+.|++++|.+. .+|..                  +..+++|++|++++
T Consensus       386 l~~L~~L~Ls~N~l~----~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~  460 (549)
T 2z81_A          386 LKNLTSLDISRNTFH----PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR  460 (549)
T ss_dssp             CTTCCEEECTTCCCC----CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCc----cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence            556666666665332    2343 444445555555555443 11111                  13567888888888


Q ss_pred             CcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      |.++ .+|. ...+++|++|++++|+++ .+|......++.+  ..+++||
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCC-CCCTTGGGGCTTCCEEECCSSC
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccC-CcCHHHHhcCcccCEEEecCCC
Confidence            8887 6776 456788888888888888 4554444466654  5566665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=2.3e-19  Score=146.99  Aligned_cols=132  Identities=22%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCC
Q 038090           26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGS  104 (186)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~  104 (186)
                      +++.|||++|.  +   ....+..|.++++|++|++++|.+++..++.|.++++|++|++++|.++   .-.+. +..++
T Consensus        53 ~~~~LdLs~N~--i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~  124 (635)
T 4g8a_A           53 STKNLDLSFNP--L---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLS  124 (635)
T ss_dssp             TCCEEECTTSC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCT
T ss_pred             CCCEEEeeCCC--C---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCC
Confidence            55666666666  2   2222334566666666666666665544555666666666666666332   11122 55566


Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC-CCchhhhccCCCCEEeccCCccc
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +|+.|++++|.+....+..|+.+++|++|++++|.+.. ..|..++.+++|++|++++|+++
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            66666666666654444455666666666666666553 23455556666666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.4e-18  Score=131.61  Aligned_cols=148  Identities=22%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|+++++++...  +.+..+++|+.|++++|.  +    ..++. +..+++|++|++++|.+.+. + .+..+++|++
T Consensus        43 L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~--i----~~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~  111 (308)
T 1h6u_A           43 ITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--I----TDLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT  111 (308)
T ss_dssp             CCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred             cCEEEeeCCCccCc--hhhhccCCCCEEEccCCc--C----CCChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence            45555555554432  234555555555555555  2    12222 44455555555555544431 1 3444444444


Q ss_pred             Eeeccccccccc------------------cCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038090           83 LSISECSSQDLF------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL  144 (186)
Q Consensus        83 L~l~~~~l~~~~------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  144 (186)
                      |++++|.+....                  ..++.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .+
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~  188 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DI  188 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC-cC
Confidence            444444322110                  011113444555555555555542 222 455555555555555555 33


Q ss_pred             chhhhccCCCCEEeccCCccc
Q 038090          145 PTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       145 ~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +. +..+++|++|++++|.++
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCC
T ss_pred             hh-hcCCCCCCEEEccCCccC
Confidence            32 555556666666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=153.84  Aligned_cols=163  Identities=19%  Similarity=0.157  Sum_probs=131.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccch-hHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGL-SNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      +++.|++++|.+....+..|..+++|+.|++++|.  .   ...+ +..+.++++|++|++++|.+.+..|+.|+.+++|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--T---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--C---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--C---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            67899999999887778889999999999999996  3   3444 6678899999999999999988778899999999


Q ss_pred             CeEeeccccccccccCCCC---CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhhcc--CCC
Q 038090           81 IYLSISECSSQDLFGYLPK---SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKL--NSL  154 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L  154 (186)
                      ++|++++|.   ..+.++.   +..+++|+.|++++|.+.+..+ ..++.+++|++|++++|.+.+..+..+..+  ++|
T Consensus       100 ~~L~Ls~n~---l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L  176 (844)
T 3j0a_A          100 FELRLYFCG---LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL  176 (844)
T ss_dssp             CCEECTTCC---CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred             CEeeCcCCC---CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence            999999994   4443332   7888999999999999876544 578899999999999999887667767665  667


Q ss_pred             CEEeccCCcccccCChhH
Q 038090          155 KTFDISSCNILGKIPTSL  172 (186)
Q Consensus       155 ~~l~l~~n~~~~~~p~~~  172 (186)
                      +.+++++|.+.+..|..+
T Consensus       177 ~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          177 SFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             CCCEECCSBSCCCCCCCC
T ss_pred             ceEECCCCccccccccch
Confidence            777777776665555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.2e-18  Score=130.97  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|++...  +.+..+++|+.|++++|.  +    ..+++ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus        47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~--l----~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK--L----TDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             cccEEEccCCCcccC--hhHhcCCCCCEEEccCCc--c----CCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            467788888877654  457788888888888888  3    23333 7778888888888887765 33 477888888


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.+..    ++.+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+. .++. +..+++|++|++++
T Consensus       116 ~L~L~~n~i~~----~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          116 SLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             EEECTTSCCCC----CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred             EEECCCCcCCC----ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCC
Confidence            88888885433    23366777788888888877643  45677778888888888777 3444 77777788888888


Q ss_pred             CcccccCChhHHHhCCCC
Q 038090          162 CNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       162 n~~~~~~p~~~~~~l~~~  179 (186)
                      |.++ .++. + ..++.+
T Consensus       188 N~i~-~l~~-l-~~l~~L  202 (291)
T 1h6t_A          188 NHIS-DLRA-L-AGLKNL  202 (291)
T ss_dssp             SCCC-BCGG-G-TTCTTC
T ss_pred             CcCC-CChh-h-ccCCCC
Confidence            8776 5543 3 245544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=8.8e-19  Score=141.11  Aligned_cols=171  Identities=19%  Similarity=0.189  Sum_probs=143.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC--CcccccCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS--AVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~   79 (186)
                      +|+.|+++++++.....  +..+++|+.|++++|.  +   .+..|..+..+++|+.|++++|.+.+  ..|..++.+++
T Consensus       303 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNL--L---TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             CCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSC--C---CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ceeEEEcCCCccccccc--hhhCCcccEEEeECCc--c---ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence            48899999998865432  2689999999999999  5   56677788999999999999999986  44577999999


Q ss_pred             CCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEE
Q 038090           80 LIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTF  157 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l  157 (186)
                      |++|++++|.   +.+.+|.  +..+++|+.|++++|.+.+..|..+.  ++|++|++++|.++ .+|..+..+++|++|
T Consensus       376 L~~L~Ls~N~---l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          376 LQQLDISQNS---VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             CCEEECCSSC---CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCEEECCCCc---CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            9999999994   4444553  67889999999999999877776654  79999999999999 899888899999999


Q ss_pred             eccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          158 DISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       158 ~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      ++++|+++ .+|......++.+  ..+++||
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            99999998 8998855567765  5667776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=2.4e-18  Score=131.89  Aligned_cols=164  Identities=21%  Similarity=0.251  Sum_probs=106.0

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|++++|.+...  +.+..+++|+.+++++|.  +   . ..+. +..+++|++|++++|.+.+..+  +..+++|++
T Consensus       179 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~--l---~-~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~  247 (347)
T 4fmz_A          179 LYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQ--I---T-DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTW  247 (347)
T ss_dssp             CSEEECTTSCCCCC--GGGGGCTTCCEEECCSSC--C---C-CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCEEEccCCccccc--ccccCCCccceeecccCC--C---C-CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence            44444444444322  114445555555555554  2   1 1222 5667778888888777765433  777888888


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |++++|.+..    ++.+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..++.+++|+++++++|
T Consensus       248 L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          248 LEIGTNQISD----INAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             EECCSSCCCC----CGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             EECCCCccCC----ChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            8888885432    2336777888888888888774 3 34777888888888888888666677888888999999988


Q ss_pred             cccccCChhHHHhCCCC--CCCCCCC
Q 038090          163 NILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       163 ~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +++ .++.  ...++.+  .++++||
T Consensus       322 ~l~-~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          322 HIT-DIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             SCC-CCGG--GGGCTTCSEESSSCC-
T ss_pred             ccc-cccC--hhhhhccceeehhhhc
Confidence            887 4444  3356654  4555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2.6e-20  Score=157.79  Aligned_cols=119  Identities=20%  Similarity=0.305  Sum_probs=74.4

Q ss_pred             hhHHHHcCCccceEEeccccCCC-----------------CcccccC--CCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090           46 LSNLAKKLTNLIEIYLIDVDTSS-----------------AVSPTLT--NLSSLIYLSISECSSQDLFGYLPK-SQKGSL  105 (186)
Q Consensus        46 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~  105 (186)
                      +|..+.++++|+.|++++|.+++                 .+|..++  .+++|++|++++|   .+.+.+|. +..+++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N---~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC---PNMTQLPDFLYDLPE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC---TTCCSCCGGGGGCSS
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC---CCCccChHHHhCCCC
Confidence            55566677777777777777766                 2566655  7777777777777   44556666 666667


Q ss_pred             ccEEEccCCc-CCC-CCCcccCC-------CCCCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCC
Q 038090          106 LEDLRLSFTK-FLG-KIPPSLGN-------LTNLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       106 L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      |+.|++++|. +.+ .+|..++.       +++|++|++++|.+. .+|.  .++.+++|++|++++|.++ .+|
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            7777777666 554 34443332       236666666666666 5555  5666666666666666665 555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=7.3e-19  Score=148.95  Aligned_cols=165  Identities=18%  Similarity=0.201  Sum_probs=115.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCC-cccccccc-chhHHHHcCC-------ccceEEeccccCCCCccc
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNH-FAFKLQKS-GLSNLAKKLT-------NLIEIYLIDVDTSSAVSP   72 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~   72 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|. +     .+ .+|..+..+.       +|+.|++++|.+. .+|.
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-----sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-----CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-----ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            57888888888777777888888999999999886 3     33 5676666555       8888888888887 5676


Q ss_pred             --ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCC-CCEEEcCCCcCCCCCchhhh
Q 038090           73 --TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTN-LEDRYLSDNGFSGELPTSLG  149 (186)
Q Consensus        73 --~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~  149 (186)
                        .++.+++|++|++++|.+.    .+|.+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~----~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~  639 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR----HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN  639 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC----BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred             hhhhhcCCCCCEEECCCCCcc----cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence              7888888888888888443    4445667777777777777776 66666666666 777777777666 5554333


Q ss_pred             cc-------------------------------CCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          150 KL-------------------------------NSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       150 ~~-------------------------------~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      .+                               ++|++|++++|.++ .+|..++..++.+
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L  699 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI  699 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence            22                               24556666666665 5666666555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=3e-18  Score=129.80  Aligned_cols=134  Identities=21%  Similarity=0.271  Sum_probs=102.1

Q ss_pred             hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090           19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP   98 (186)
Q Consensus        19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~   98 (186)
                      ...+++++|+.|++++|.  +    ..++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+..    ++
T Consensus        35 ~~~~~l~~L~~L~l~~~~--i----~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~----~~  101 (308)
T 1h6u_A           35 VTQADLDGITTLSAFGTG--V----TTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN----VS  101 (308)
T ss_dssp             ECHHHHHTCCEEECTTSC--C----CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----CG
T ss_pred             ecHHHcCCcCEEEeeCCC--c----cCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----ch
Confidence            345789999999999999  3    3344 57889999999999999886444  9999999999999996543    23


Q ss_pred             CCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090           99 KSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus        99 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .++. ++.+++|++|++++|.++ .++.
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~  168 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP  168 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG
T ss_pred             hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCC-CChh
Confidence            47778888888888888874 333 777788888888888777 4443 666777777777777776 4444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.6e-18  Score=124.92  Aligned_cols=147  Identities=19%  Similarity=0.226  Sum_probs=123.1

Q ss_pred             ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC-C-CCCC
Q 038090           26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP-K-SQKG  103 (186)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~-~~~~  103 (186)
                      .-+.++.+++.      ...+|..+  .++|+.|++++|.+.+..+..|..+++|++|++++|.+.    .++ . +..+
T Consensus        20 s~~~v~c~~~~------l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----~i~~~~~~~l   87 (229)
T 3e6j_A           20 SGTTVDCRSKR------HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----ALPVGVFDSL   87 (229)
T ss_dssp             ETTEEECTTSC------CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC
T ss_pred             eCCEeEccCCC------cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC----CcChhhcccC
Confidence            35678999888      34555433  389999999999999888889999999999999999542    333 3 6889


Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CC
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VA  181 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~  181 (186)
                      ++|+.|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|......++.+  ..
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence            99999999999998666677889999999999999999 88998999999999999999998 8887766677765  55


Q ss_pred             CCCCC
Q 038090          182 LSSTP  186 (186)
Q Consensus       182 l~~~~  186 (186)
                      +++||
T Consensus       166 l~~N~  170 (229)
T 3e6j_A          166 LFGNP  170 (229)
T ss_dssp             CTTSC
T ss_pred             eeCCC
Confidence            67776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=1.7e-18  Score=140.90  Aligned_cols=158  Identities=18%  Similarity=0.158  Sum_probs=133.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L   80 (186)
                      +|+.|++++|.+....+..+..+++|+.|++++|.+.-   ....|..+..+++|++|++++|.+.+..| ..+..+++|
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB---TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC---cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            67889999999887778888999999999999999321   12456678899999999999999997444 468899999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEe
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFD  158 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~  158 (186)
                      ++|++++|.   +.+.+|. +.  ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++++
T Consensus       431 ~~L~l~~n~---l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          431 LVLNLSSNM---LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CEEECCSSC---CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             CEEECCCCC---CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence            999999994   4455554 32  68999999999998 78888889999999999999999 78876 88999999999


Q ss_pred             ccCCcccccCC
Q 038090          159 ISSCNILGKIP  169 (186)
Q Consensus       159 l~~n~~~~~~p  169 (186)
                      +++|++.+..+
T Consensus       504 l~~N~~~c~c~  514 (562)
T 3a79_B          504 LHDNPWDCTCP  514 (562)
T ss_dssp             CCSCCBCCCHH
T ss_pred             ecCCCcCCCcc
Confidence            99999986554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=1.6e-18  Score=137.13  Aligned_cols=89  Identities=20%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             cCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090           74 LTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN  152 (186)
Q Consensus        74 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (186)
                      +..+++|++|++++|   .+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus       203 ~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          203 LTPLIKLDELDLSGN---HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             CTTCSSCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             cCCCcccCEEECCCC---ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            344455555555555   23333355 88999999999999999977888899999999999999999954455678899


Q ss_pred             CCCEEeccCCccc
Q 038090          153 SLKTFDISSCNIL  165 (186)
Q Consensus       153 ~L~~l~l~~n~~~  165 (186)
                      +|+++++++|++.
T Consensus       280 ~L~~L~L~~Np~~  292 (440)
T 3zyj_A          280 HLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEcCCCCcc
Confidence            9999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.9e-18  Score=128.21  Aligned_cols=150  Identities=26%  Similarity=0.290  Sum_probs=126.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+....+  +..+++|+.|++++|.  +    ..++ .+..+++|++|++++|.+.+.  +.+..+++|+
T Consensus        69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~--l----~~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK--V----KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC--C----CCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             CCCEEEccCCccCCCcc--cccCCCCCEEECCCCc--C----CCCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            68899999999876533  8999999999999999  3    3344 488899999999999998863  4788999999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.+...    +.+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++ .++. +..+++|+.|++++
T Consensus       138 ~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          138 SLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS  209 (291)
T ss_dssp             EEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEE
T ss_pred             EEEccCCcCCcc----hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcC
Confidence            999999965432    347889999999999999985444  889999999999999999 5654 88999999999999


Q ss_pred             CcccccCChh
Q 038090          162 CNILGKIPTS  171 (186)
Q Consensus       162 n~~~~~~p~~  171 (186)
                      |+++ ..|..
T Consensus       210 n~i~-~~~~~  218 (291)
T 1h6t_A          210 QECL-NKPIN  218 (291)
T ss_dssp             EEEE-CCCEE
T ss_pred             Cccc-CCccc
Confidence            9997 45543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=8.5e-19  Score=135.54  Aligned_cols=155  Identities=18%  Similarity=0.071  Sum_probs=127.6

Q ss_pred             CccceecccccccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .++.|++++|.+.......+. .+++|+.|++++|.  +   ....+..|.++++|+.|++++|.+....+..|..+++|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--L---NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL  114 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--C---CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence            468899999999877777777 99999999999999  4   44445568899999999999999997777789999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc-c---CCCCCCCEEEcCCCcCCCCCchhhhccCC--
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS-L---GNLTNLEDRYLSDNGFSGELPTSLGKLNS--  153 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~--  153 (186)
                      ++|++++|.+   ....+. +..+++|+.|++++|.+.. +|.. +   ..+++|++|++++|.+.+..+..+..++.  
T Consensus       115 ~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~  190 (361)
T 2xot_A          115 EVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV  190 (361)
T ss_dssp             CEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred             CEEECCCCcc---cEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence            9999999954   333455 8899999999999999984 5544 4   56899999999999999433356777776  


Q ss_pred             CCEEeccCCccc
Q 038090          154 LKTFDISSCNIL  165 (186)
Q Consensus       154 L~~l~l~~n~~~  165 (186)
                      ++.+++++|++.
T Consensus       191 l~~l~l~~N~~~  202 (361)
T 2xot_A          191 KNGLYLHNNPLE  202 (361)
T ss_dssp             HTTEECCSSCEE
T ss_pred             cceEEecCCCcc
Confidence            489999999885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=1.9e-18  Score=137.19  Aligned_cols=89  Identities=19%  Similarity=0.085  Sum_probs=70.2

Q ss_pred             cCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090           74 LTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN  152 (186)
Q Consensus        74 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (186)
                      +..+++|++|++++|   .+.+..|. +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus       214 ~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          214 LTPLVGLEELEMSGN---HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             CTTCTTCCEEECTTS---CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             ccccccccEEECcCC---cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            344445555555555   23333455 78899999999999999877888899999999999999999954455678899


Q ss_pred             CCCEEeccCCccc
Q 038090          153 SLKTFDISSCNIL  165 (186)
Q Consensus       153 ~L~~l~l~~n~~~  165 (186)
                      +|+++++++|++.
T Consensus       291 ~L~~L~L~~Np~~  303 (452)
T 3zyi_A          291 YLVELHLHHNPWN  303 (452)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEccCCCcC
Confidence            9999999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.3e-18  Score=124.46  Aligned_cols=133  Identities=17%  Similarity=0.089  Sum_probs=117.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++.+....+..|..+++|+.|++++|.  +   ....+..|.++++|+.|++++|.++...+..|..+++|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i---~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~  107 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--I---SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ  107 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--C---CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--C---CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence            57899999999987777789999999999999999  4   455577899999999999999999977667789999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG  142 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  142 (186)
                      +|++++|.   +....+. +..+++|+.|++++|.+....+..+..+++|+++++++|.+.+
T Consensus       108 ~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          108 LLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             EEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCC---CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999994   4444455 8899999999999999997777789999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=3.5e-19  Score=130.11  Aligned_cols=160  Identities=15%  Similarity=0.092  Sum_probs=129.2

Q ss_pred             Cccceeccccc-ccCcChhhHHhhcccCeeeCCC-CCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCC
Q 038090            2 SQRKINEQDFG-VETSNISRVARALQLGVLDLSY-NHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~   79 (186)
                      +|+.|++++|. +.......|..+++|+.|++++ |.  +   ....+..+.++++|++|++++|.+.+ .|. +..+++
T Consensus        56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l---~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~  128 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--L---TYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS  128 (239)
T ss_dssp             TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--C---CEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred             CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--e---eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence            68899999997 8777667889999999999998 88  3   33334567889999999999999986 555 888888


Q ss_pred             CC---eEeeccc-cccccccCCCC-CCCCCccc-EEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhcc-
Q 038090           80 LI---YLSISEC-SSQDLFGYLPK-SQKGSLLE-DLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKL-  151 (186)
Q Consensus        80 L~---~L~l~~~-~l~~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~-  151 (186)
                      |+   +|++++| .+....   +. +..+++|+ .|++++|.+. .+|......++|++|++++|+ +++..+..+..+ 
T Consensus       129 L~~L~~L~l~~N~~l~~i~---~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIP---VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             CCSEEEEEEESCTTCCEEC---TTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             cccccEEECCCCcchhhcC---cccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence            88   9999999 654322   23 78889999 9999999998 555544444899999999995 883334568888 


Q ss_pred             CCCCEEeccCCcccccCChhHH
Q 038090          152 NSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       152 ~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      ++|+++++++|+++ .+|....
T Consensus       205 ~~L~~L~l~~N~l~-~l~~~~~  225 (239)
T 2xwt_C          205 SGPSLLDVSQTSVT-ALPSKGL  225 (239)
T ss_dssp             BCCSEEECTTCCCC-CCCCTTC
T ss_pred             cCCcEEECCCCccc-cCChhHh
Confidence            99999999999998 8887743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=3.7e-18  Score=126.59  Aligned_cols=144  Identities=22%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|++...  +.+..+++|+.|++++|.  +    ..+++ +..+++|+.|++++|.+.+ .+.. .. ++|+
T Consensus        42 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~--i----~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~  109 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQ--I----SDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS  109 (263)
T ss_dssp             TCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred             cCcEEECcCCCcccc--hHHhhCCCCCEEECCCCc--c----CCChh-hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence            456666666665543  255666666666666666  2    22333 5666666666666666654 2222 22 6666


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.++.    ++.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++
T Consensus       110 ~L~L~~N~l~~----~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          110 RLFLDNNELRD----TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             EEECCSSCCSB----SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             EEEccCCccCC----ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            66666664332    2235666667777777776653 23 456667777777777776633  4466667777777777


Q ss_pred             Cccc
Q 038090          162 CNIL  165 (186)
Q Consensus       162 n~~~  165 (186)
                      |.+.
T Consensus       182 N~~~  185 (263)
T 1xeu_A          182 QKCV  185 (263)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            7665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=9.9e-20  Score=141.76  Aligned_cols=177  Identities=15%  Similarity=0.106  Sum_probs=108.8

Q ss_pred             CccceecccccccCc----ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcC---------CccceEEeccccCCC
Q 038090            2 SQRKINEQDFGVETS----NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL---------TNLIEIYLIDVDTSS   68 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~~~   68 (186)
                      +|+.|++++|.+...    .+..+..+++|+.|++++|.+.. .....++..+..+         ++|++|++++|.+..
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            456677777666542    34455667777777777776210 0001223333334         677777777776652


Q ss_pred             -Ccc---cccCCCCCCCeEeeccccccc--cccCCCC-CCCCCcccEEEccCCcCC----CCCCcccCCCCCCCEEEcCC
Q 038090           69 -AVS---PTLTNLSSLIYLSISECSSQD--LFGYLPK-SQKGSLLEDLRLSFTKFL----GKIPPSLGNLTNLEDRYLSD  137 (186)
Q Consensus        69 -~~~---~~~~~l~~L~~L~l~~~~l~~--~~~~~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~  137 (186)
                       ..+   ..+..+++|++|++++|.+..  .....+. +..+++|+.|++++|.+.    ..+|..+..+++|++|++++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence             223   345566777777777775431  0012332 567777888888888774    34566677778888888888


Q ss_pred             CcCCCC----Cchhhh--ccCCCCEEeccCCcccc----cCChhHHHhCCCC
Q 038090          138 NGFSGE----LPTSLG--KLNSLKTFDISSCNILG----KIPTSLLIRLPPS  179 (186)
Q Consensus       138 n~~~~~----~~~~~~--~~~~L~~l~l~~n~~~~----~~p~~~~~~l~~~  179 (186)
                      |.+.+.    ++..+.  .+++|++|++++|.+++    .+|..+...++.+
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L  305 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  305 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence            887743    344453  37788888888888875    3777776566665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=4.4e-18  Score=120.90  Aligned_cols=148  Identities=20%  Similarity=0.229  Sum_probs=124.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++++...  +.+..+++|+.|++++|.  +    ..+ ..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus        45 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~--~----~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           45 SLTYITLANINVTDL--TGIEYAHNIKDLTINNIH--A----TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             TCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCC--C----SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             CccEEeccCCCccCh--HHHhcCCCCCEEEccCCC--C----Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            578999999998743  268999999999999998  3    333 3678899999999999999877788999999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      +|++++|.   +....+. +..+++|+.|++++|. +. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++
T Consensus       116 ~L~Ls~n~---i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          116 LLDISHSA---HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             EEECCSSB---CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEE
T ss_pred             EEEecCCc---cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEe
Confidence            99999994   4444455 8899999999999998 65 555 6889999999999999999 555 6889999999999


Q ss_pred             cCCccc
Q 038090          160 SSCNIL  165 (186)
Q Consensus       160 ~~n~~~  165 (186)
                      ++|++.
T Consensus       189 ~~N~i~  194 (197)
T 4ezg_A          189 FSQTIG  194 (197)
T ss_dssp             CBC---
T ss_pred             eCcccC
Confidence            999985

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=7.7e-19  Score=133.48  Aligned_cols=158  Identities=15%  Similarity=0.074  Sum_probs=124.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccccc-CCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTL-TNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L   80 (186)
                      +|+.|++++|.+......   .+++|+.|++++|.  +   ....+..+..+++|+.|++++|.+.+..+..+ ..+++|
T Consensus       100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNK--I---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC--C---CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CcCEEECCCCccCCcCcc---ccCCCCEEECCCCC--C---CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence            456666666665543322   36788899999998  4   34444567889999999999999987666666 478999


Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      ++|++++|.++..    +....+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++++++
T Consensus       172 ~~L~L~~N~l~~~----~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          172 EHLNLQYNFIYDV----KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CEEECTTSCCCEE----ECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             CEEECCCCcCccc----ccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            9999999965433    33456889999999999998 56666889999999999999999 788889999999999999


Q ss_pred             CCccc-ccCChhHH
Q 038090          161 SCNIL-GKIPTSLL  173 (186)
Q Consensus       161 ~n~~~-~~~p~~~~  173 (186)
                      +|++. +.+|..+.
T Consensus       246 ~N~~~~~~~~~~~~  259 (317)
T 3o53_A          246 GNGFHCGTLRDFFS  259 (317)
T ss_dssp             TCCCBHHHHHHHHH
T ss_pred             CCCccCcCHHHHHh
Confidence            99998 55555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=4e-18  Score=139.61  Aligned_cols=164  Identities=22%  Similarity=0.154  Sum_probs=135.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      ++++|++++|.++...+..|.++++|++||+++|.  +   ....+..|.++++|++|++++|++++..++.|.++++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--C---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            57899999999998877889999999999999999  4   343455689999999999999999977677899999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCC----CC
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNS----LK  155 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~----L~  155 (186)
                      +|++++|.+.   .-.+. ++.+++|+.|++++|.+.. ..|..++.+++|++|++++|.+.+..+..+..+.+    ..
T Consensus       128 ~L~Ls~N~l~---~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          128 KLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             EEECTTSCCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred             EEECCCCcCC---CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence            9999999543   33334 8899999999999999864 36788889999999999999999655666665543    45


Q ss_pred             EEeccCCcccccCChhHHH
Q 038090          156 TFDISSCNILGKIPTSLLI  174 (186)
Q Consensus       156 ~l~l~~n~~~~~~p~~~~~  174 (186)
                      .++++.|.+. .++.....
T Consensus       205 ~~~ls~n~l~-~i~~~~~~  222 (635)
T 4g8a_A          205 SLDLSLNPMN-FIQPGAFK  222 (635)
T ss_dssp             EEECTTCCCC-EECTTTTT
T ss_pred             hhhcccCccc-ccCccccc
Confidence            7899999997 66665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=4.9e-19  Score=135.14  Aligned_cols=173  Identities=20%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCC-CccccccccchhHHHHcCCccceEEeccc-cCCCC-cccccCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYN-HFAFKLQKSGLSNLAKKLTNLIEIYLIDV-DTSSA-VSPTLTNLS   78 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~   78 (186)
                      +|++|++++|.+....+..++.+++|+.|++++| .+.    ...++..+..+++|++|++++| .+++. .+..+..++
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~----~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS----EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC----HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC----HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            4566666666655444555666666666666666 311    1134555666666666666666 55532 344555666


Q ss_pred             -CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhccCCC
Q 038090           79 -SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKLNSL  154 (186)
Q Consensus        79 -~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L  154 (186)
                       +|++|++++|.+.--...++. +..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence             677777766621000123333 4566777777777776 554556666777777777777774 221222246667777


Q ss_pred             CEEeccCCcccccCChhHHHhCCCC
Q 038090          155 KTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       155 ~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      ++|++++| ++.+.-..+.+.++.+
T Consensus       275 ~~L~l~~~-i~~~~~~~l~~~l~~L  298 (336)
T 2ast_B          275 KTLQVFGI-VPDGTLQLLKEALPHL  298 (336)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTS
T ss_pred             CEEeccCc-cCHHHHHHHHhhCcce
Confidence            77777777 5433334444445543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.5e-17  Score=136.35  Aligned_cols=147  Identities=23%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+...  +.+..|++|+.|+|++|.  +    ..+++ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus        44 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~--l----~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK--L----TDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             TCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSC--C----CCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             CCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCC--C----CCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            567778888777653  357788888888888887  3    22333 6777888888888887764 23 677777788


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.+..    ++.+..+++|+.|++++|.+.+.  ..+..+++|++|+|++|.+.+ ++. +..+++|+.|++++
T Consensus       113 ~L~Ls~N~l~~----l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          113 SLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSK  184 (605)
T ss_dssp             EEECTTSCCCC----CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred             EEEecCCCCCC----CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcC
Confidence            88887775432    23366677777777777777633  456677777777777777763 333 66677777777777


Q ss_pred             CcccccC
Q 038090          162 CNILGKI  168 (186)
Q Consensus       162 n~~~~~~  168 (186)
                      |.++ .+
T Consensus       185 N~i~-~l  190 (605)
T 1m9s_A          185 NHIS-DL  190 (605)
T ss_dssp             SCCC-BC
T ss_pred             CCCC-CC
Confidence            7776 44

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=3.3e-18  Score=118.47  Aligned_cols=136  Identities=25%  Similarity=0.200  Sum_probs=114.1

Q ss_pred             hcccCeeeCCCCCccccccc-cchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CC
Q 038090           24 ALQLGVLDLSYNHFAFKLQK-SGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ  101 (186)
Q Consensus        24 l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~  101 (186)
                      .++|+.|++++|.  +   . +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+   ...+|. +.
T Consensus        23 ~~~L~~L~l~~n~--l---~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~   92 (168)
T 2ell_A           23 PAAVRELVLDNCK--S---NDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI---FGGLDMLAE   92 (168)
T ss_dssp             TTSCSEEECCSCB--C---BTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCC---CSCCCHHHH
T ss_pred             cccCCEEECCCCC--C---ChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcC---chHHHHHHh
Confidence            4789999999999  3   3 46777778899999999999998865  7889999999999999944   444666 66


Q ss_pred             CCCcccEEEccCCcCCCCC-CcccCCCCCCCEEEcCCCcCCCCCch----hhhccCCCCEEeccCCcccccCChh
Q 038090          102 KGSLLEDLRLSFTKFLGKI-PPSLGNLTNLEDRYLSDNGFSGELPT----SLGKLNSLKTFDISSCNILGKIPTS  171 (186)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~p~~  171 (186)
                      .+++|+.|++++|.+.+.. +..+..+++|++|++++|.+. ..+.    .+..+++|++|++++|.+. ++|.+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            7999999999999998432 278889999999999999999 4444    6889999999999999997 77764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=7.1e-18  Score=121.90  Aligned_cols=135  Identities=15%  Similarity=0.059  Sum_probs=116.2

Q ss_pred             CccceecccccccCcCh-hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            2 SQRKINEQDFGVETSNI-SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .++.|+++++.+....+ ..|..+++|+.|++++|.  +   ....+..+.++++|++|++++|.+++..+..|..+++|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--I---TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--C---CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            46789999999886643 458899999999999999  4   44445578999999999999999998878889999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL  144 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  144 (186)
                      ++|++++|.   +....|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.-
T Consensus       108 ~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          108 KTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CEEECTTSC---CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CEEECCCCc---CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            999999994   4444456 889999999999999999777899999999999999999998653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=5.3e-17  Score=124.45  Aligned_cols=164  Identities=20%  Similarity=0.198  Sum_probs=107.9

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|++++|.+...  ..+..+++|+.|++++|.  +    ..++. +..+++|+.+++++|.+.+..+  +..+++|++
T Consensus       157 L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~--l----~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  225 (347)
T 4fmz_A          157 LNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQ--I----EDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS  225 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECTTSC--C----CCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             CcEEEecCCCcCCc--hhhccCCCCCEEEccCCc--c----ccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence            44555555544332  125556666666666665  2    22222 5556666666666666554322  677788888


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |++++|.+..    ++.+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+. .+ ..+..+++|++|++++|
T Consensus       226 L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          226 LKIGNNKITD----LSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             EECCSSCCCC----CGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSS
T ss_pred             EEccCCccCC----CcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCC
Confidence            8888885432    2226778889999999988874 3 45788899999999999888 44 44888999999999999


Q ss_pred             cccccCChhHHHhCCCC--CCCCCCC
Q 038090          163 NILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       163 ~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      .+++..|..+. .++.+  ..+++|+
T Consensus       298 ~l~~~~~~~l~-~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          298 QLGNEDMEVIG-GLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCCGGGHHHHH-TCTTCSEEECCSSS
T ss_pred             cCCCcChhHhh-ccccCCEEEccCCc
Confidence            99855444444 67765  4455553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=3.1e-18  Score=145.32  Aligned_cols=166  Identities=19%  Similarity=0.117  Sum_probs=140.0

Q ss_pred             Cccceeccccccc-CcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc--cCCCC
Q 038090            2 SQRKINEQDFGVE-TSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT--LTNLS   78 (186)
Q Consensus         2 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~   78 (186)
                      +|+.|++++|... ...+..|.++++|++|++++|.  +   ....|..+.++.+|++|++++|.+.+..+..  ++.++
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--I---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--C---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--C---cccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            6899999999544 4447789999999999999999  5   5556788999999999999999998765544  89999


Q ss_pred             CCCeEeeccccccccccCCC-C-CCCCCcccEEEccCCcCCCCCCcccCCC--CCCCEEEcCCCcCCCCCchhhhccCC-
Q 038090           79 SLIYLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTKFLGKIPPSLGNL--TNLEDRYLSDNGFSGELPTSLGKLNS-  153 (186)
Q Consensus        79 ~L~~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~-  153 (186)
                      +|++|++++|.+   .+..+ . ++.+++|+.|++++|.+....+..+..+  ++|+.|+++.|.+.+..+..++.+.+ 
T Consensus       124 ~L~~L~Ls~N~l---~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          124 ALTRLDLSKNQI---RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SCCEEEEESCCC---CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred             CCCEEECCCCcc---cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence            999999999954   34333 4 8899999999999999988888888877  89999999999999877777766655 


Q ss_pred             -----CCEEeccCCcccccCChhHHHh
Q 038090          154 -----LKTFDISSCNILGKIPTSLLIR  175 (186)
Q Consensus       154 -----L~~l~l~~n~~~~~~p~~~~~~  175 (186)
                           |++|++++|.+++.+|..+...
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhh
Confidence                 9999999999988888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.8e-18  Score=138.65  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=127.6

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccC-CCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT-NLSSL   80 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L   80 (186)
                      +|+.|++++|.+....+.   .+++|+.|++++|.  +   .+..+..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNK--I---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSC--C---CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCC--C---CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence            466677777766544332   46789999999998  4   455566788899999999999999987777776 79999


Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      ++|++++|.++..    +....+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++|++++++
T Consensus       172 ~~L~Ls~N~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          172 EHLNLQYNFIYDV----KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             CEEECTTSCCCEE----ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             cEEecCCCccccc----cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcC
Confidence            9999999965433    345568999999999999984 5666889999999999999999 688889999999999999


Q ss_pred             CCccc-ccCChhHH
Q 038090          161 SCNIL-GKIPTSLL  173 (186)
Q Consensus       161 ~n~~~-~~~p~~~~  173 (186)
                      +|.+. +.+|..+.
T Consensus       246 ~N~l~c~~~~~~~~  259 (487)
T 3oja_A          246 GNGFHCGTLRDFFS  259 (487)
T ss_dssp             TCCBCHHHHHHHHT
T ss_pred             CCCCcCcchHHHHH
Confidence            99997 55555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.5e-17  Score=123.33  Aligned_cols=155  Identities=23%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +.++++.++.+...  ..+..+++|+.|++++|.  +    ..++ .+..+++|+.|++++|.+.+..+  +..+++|++
T Consensus        21 l~~l~l~~~~i~~~--~~~~~l~~L~~L~l~~n~--i----~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           21 AVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSN--I----QSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCSEEECTTSC--C----CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHhcCCCcccc--cchhhcCcCcEEECcCCC--c----ccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            45667888877654  368899999999999999  3    3444 57889999999999999987544  999999999


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |++++|.++.    ++.+.. ++|+.|++++|.+.+ ++ .+..+++|++|++++|.++ .++ .++.+++|++|++++|
T Consensus        90 L~L~~N~l~~----l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           90 LSVNRNRLKN----LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             EECCSSCCSC----CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTS
T ss_pred             EECCCCccCC----cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCC
Confidence            9999996543    344334 889999999999984 43 5889999999999999999 555 6889999999999999


Q ss_pred             cccccCChhHHHhCCCCC
Q 038090          163 NILGKIPTSLLIRLPPSV  180 (186)
Q Consensus       163 ~~~~~~p~~~~~~l~~~~  180 (186)
                      .++ .+ ..+. .++.+.
T Consensus       161 ~i~-~~-~~l~-~l~~L~  175 (263)
T 1xeu_A          161 EIT-NT-GGLT-RLKKVN  175 (263)
T ss_dssp             CCC-BC-TTST-TCCCCC
T ss_pred             cCc-ch-HHhc-cCCCCC
Confidence            998 54 3333 555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.1e-17  Score=137.12  Aligned_cols=152  Identities=25%  Similarity=0.278  Sum_probs=127.4

Q ss_pred             CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .+|+.|++++|.+....+  +..|++|+.|+|++|.  +    ..++ .+..+++|+.|++++|.+.+.  +.+..+++|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~--l----~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  133 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK--I----KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL  133 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC--C----CCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC--C----CCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence            368899999999876533  8999999999999999  3    2333 578899999999999998863  468899999


Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +.|++++|.+...    +.+..+++|+.|++++|.+.+..|  +..+++|++|+|++|.+. .++ .+..+++|+.|+++
T Consensus       134 ~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          134 ESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  205 (605)
T ss_dssp             SEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECC
T ss_pred             CEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEcc
Confidence            9999999965432    347899999999999999986555  889999999999999999 454 58899999999999


Q ss_pred             CCcccccCChhH
Q 038090          161 SCNILGKIPTSL  172 (186)
Q Consensus       161 ~n~~~~~~p~~~  172 (186)
                      +|++. ..|...
T Consensus       206 ~N~l~-~~p~~~  216 (605)
T 1m9s_A          206 SQECL-NKPINH  216 (605)
T ss_dssp             SEEEE-CCCCCC
T ss_pred             CCcCc-CCcccc
Confidence            99998 555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=3.6e-19  Score=135.89  Aligned_cols=154  Identities=20%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             CccceecccccccCc-ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccc-cCCCC-cccccCCCC
Q 038090            2 SQRKINEQDFGVETS-NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDV-DTSSA-VSPTLTNLS   78 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~   78 (186)
                      +|+.|++++|.+... .+..+..+++|+.|++++|.  +   ....+..+..+++|++|++++| .+++. .+..+..++
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l---~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--L---SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--C---CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--c---CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            345555555554432 23344555666666666665  3   3344555555666666666665 33321 333455556


Q ss_pred             CCCeEeeccc-cccccccCCCC-CCCCC-cccEEEccCCc--CC-CCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhcc
Q 038090           79 SLIYLSISEC-SSQDLFGYLPK-SQKGS-LLEDLRLSFTK--FL-GKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKL  151 (186)
Q Consensus        79 ~L~~L~l~~~-~l~~~~~~~~~-~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~  151 (186)
                      +|++|++++| .++.  ..++. +..++ +|+.|++++|.  +. ..++..+..+++|++|++++|. +++..+..+..+
T Consensus       169 ~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          169 RLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             TCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             CCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence            6666666655 3321  01223 44555 66666666663  32 1234444556666666666666 444445556666


Q ss_pred             CCCCEEeccCC
Q 038090          152 NSLKTFDISSC  162 (186)
Q Consensus       152 ~~L~~l~l~~n  162 (186)
                      ++|++|++++|
T Consensus       247 ~~L~~L~l~~~  257 (336)
T 2ast_B          247 NYLQHLSLSRC  257 (336)
T ss_dssp             TTCCEEECTTC
T ss_pred             CCCCEeeCCCC
Confidence            66666666666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=5.7e-17  Score=129.12  Aligned_cols=145  Identities=23%  Similarity=0.281  Sum_probs=68.5

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.|++++|.+...  +.+..+++|+.|++++|.  +   .+ .++ +..+++|+.|++++|.+.+..+  +..+++|++
T Consensus       223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~--l---~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  291 (466)
T 1o6v_A          223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ--I---SN-LAP-LSGLTKLTELKLGANQISNISP--LAGLTALTN  291 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC--C---CC-CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             CCEEECCCCCcccc--hhhhcCCCCCEEECCCCc--c---cc-chh-hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence            34444444443321  234444555555555554  2   11 111 4445555555555555443222  445555555


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |++++|.+..    ++.+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.+ + ..+..+++|++|++++|
T Consensus       292 L~L~~n~l~~----~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          292 LELNENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHN  363 (466)
T ss_dssp             EECCSSCCSC----CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred             EEcCCCcccC----chhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCC
Confidence            5555553221    1114455555555555555553333  4455555555555555552 2 23555555666666655


Q ss_pred             cccc
Q 038090          163 NILG  166 (186)
Q Consensus       163 ~~~~  166 (186)
                      ++++
T Consensus       364 ~l~~  367 (466)
T 1o6v_A          364 QISD  367 (466)
T ss_dssp             CCCB
T ss_pred             ccCc
Confidence            5553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.8e-18  Score=138.40  Aligned_cols=171  Identities=15%  Similarity=0.066  Sum_probs=130.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccc--------cccccchhHHHHc---------------------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAF--------KLQKSGLSNLAKK---------------------   52 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~~~~~---------------------   52 (186)
                      +|++|+++++.+. ..|+.+..|++|+.|++++|....        ....+..|..+..                     
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            5778888888876 447888899999999986663000        0001112221111                     


Q ss_pred             -----------CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCC
Q 038090           53 -----------LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKI  120 (186)
Q Consensus        53 -----------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~  120 (186)
                                 ...|+.|++++|.+++ +|. ++.+++|++|++++|.+   . .+|. ++.+++|+.|++++|.+.+ +
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l---~-~lp~~~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL---R-ALPPALAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC---C-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred             hhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc---c-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence                       1257789999999986 565 99999999999999954   3 6677 8999999999999999984 6


Q ss_pred             CcccCCCCCCCEEEcCCCcCCCCC-chhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCC
Q 038090          121 PPSLGNLTNLEDRYLSDNGFSGEL-PTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVAL  182 (186)
Q Consensus       121 ~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l  182 (186)
                      | .++.+++|++|++++|.+++.. |..++.+++|++|++++|+++ .+|.   .+...+|.+..|
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEE
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCcc
Confidence            7 8999999999999999999654 889999999999999999998 4444   344568887665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=4.7e-18  Score=131.38  Aligned_cols=159  Identities=14%  Similarity=0.087  Sum_probs=82.6

Q ss_pred             CccceecccccccCcCh----hhHHhhc-ccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCcc
Q 038090            2 SQRKINEQDFGVETSNI----SRVARAL-QLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVS   71 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~   71 (186)
                      +|+.|++++|.+....+    ..+..++ +|++|++++|.  +   ....+..+..+     ++|++|++++|.+.+..+
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--L---GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--G---GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--C---CHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            36667777776665555    4555566 67777777776  3   33333334433     667777777776665444


Q ss_pred             cc----cCCC-CCCCeEeeccccccccccC-CCC-CCC-CCcccEEEccCCcCCCCCCc----ccCCCC-CCCEEEcCCC
Q 038090           72 PT----LTNL-SSLIYLSISECSSQDLFGY-LPK-SQK-GSLLEDLRLSFTKFLGKIPP----SLGNLT-NLEDRYLSDN  138 (186)
Q Consensus        72 ~~----~~~l-~~L~~L~l~~~~l~~~~~~-~~~-~~~-~~~L~~L~l~~~~~~~~~~~----~~~~l~-~L~~L~L~~n  138 (186)
                      ..    +..+ ++|++|++++|.++..... +.. +.. .++|+.|++++|.+.+..+.    .+..++ +|++|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            32    2233 5666777766643211110 001 112 24566666666665533222    223333 5666666666


Q ss_pred             cCCCCCchhhh----cc-CCCCEEeccCCccc
Q 038090          139 GFSGELPTSLG----KL-NSLKTFDISSCNIL  165 (186)
Q Consensus       139 ~~~~~~~~~~~----~~-~~L~~l~l~~n~~~  165 (186)
                      .+.+..+..+.    .+ ++|++|++++|.+.
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            66544333222    23 35666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=4.2e-17  Score=115.47  Aligned_cols=128  Identities=19%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH--HHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN--LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +.++++++++..+ +..+.  .+++.|++++|.  +    ..+++  .+..+++|++|++++|.+++..|..|..+++|+
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~--i----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNE--L----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCC--C----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCc--C----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            3456666665433 22222  266666666666  2    22222  256666666666666666665566666666666


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE  143 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  143 (186)
                      +|++++|.+   .+..+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus        82 ~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           82 ELQLGENKI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSCCC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcC---CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666666633   333333 55666666666666666655566666666666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=9.8e-17  Score=127.78  Aligned_cols=151  Identities=20%  Similarity=0.218  Sum_probs=125.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+....  .+..+++|+.|++++|.  +   . .++. +..+++|+.|++++|.+.+..+  +..+++|+
T Consensus       244 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~--l---~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ--I---S-NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC--C---C-CCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             CCCEEECCCCccccch--hhhcCCCCCEEECCCCc--c---C-cccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            6889999999987643  38899999999999999  3   3 3333 7889999999999999886543  88999999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.+   .+..+ +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+++++++
T Consensus       313 ~L~L~~n~l---~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          313 YLTLYFNNI---SDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             EEECCSSCC---SCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred             EEECcCCcC---CCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence            999999954   33323 67889999999999999854  468899999999999999995544  88999999999999


Q ss_pred             CcccccCChhH
Q 038090          162 CNILGKIPTSL  172 (186)
Q Consensus       162 n~~~~~~p~~~  172 (186)
                      |.++ .+|..+
T Consensus       385 n~~~-~~p~~~  394 (466)
T 1o6v_A          385 QAWT-NAPVNY  394 (466)
T ss_dssp             EEEE-CCCBCC
T ss_pred             Cccc-CCchhh
Confidence            9998 555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=2.7e-18  Score=133.68  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=132.5

Q ss_pred             CCccceecccccccCcChhhHH----hh---------cccCeeeCCCCCccccccccchh---HHHHcCCccceEEeccc
Q 038090            1 HSQRKINEQDFGVETSNISRVA----RA---------LQLGVLDLSYNHFAFKLQKSGLS---NLAKKLTNLIEIYLIDV   64 (186)
Q Consensus         1 ~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~   64 (186)
                      .+|+.|++++|.+....+..++    .+         ++|+.|++++|.+.    ...++   ..+..+++|++|++++|
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE----NGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT----GGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC----cHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3689999999998754444444    34         89999999999932    13444   56778999999999999


Q ss_pred             cCCC-----CcccccCCCCCCCeEeecccccccc-ccCCCC-CCCCCcccEEEccCCcCCCC----CCccc--CCCCCCC
Q 038090           65 DTSS-----AVSPTLTNLSSLIYLSISECSSQDL-FGYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSL--GNLTNLE  131 (186)
Q Consensus        65 ~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~--~~l~~L~  131 (186)
                      .+..     ..+..+..+++|++|++++|.++.. ...++. +..+++|+.|++++|.+.+.    ++..+  +.+++|+
T Consensus       198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence            8873     2344788999999999999954211 134555 78889999999999998754    45556  3489999


Q ss_pred             EEEcCCCcCCC----CCchhh-hccCCCCEEeccCCcccccCC--hhHHHhCC
Q 038090          132 DRYLSDNGFSG----ELPTSL-GKLNSLKTFDISSCNILGKIP--TSLLIRLP  177 (186)
Q Consensus       132 ~L~L~~n~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~p--~~~~~~l~  177 (186)
                      +|++++|.+.+    .+|..+ ..+++|++|++++|.+++..+  ..+.+.++
T Consensus       278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  330 (386)
T 2ca6_A          278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS  330 (386)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence            99999999995    377776 668999999999999996654  55554444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=1.5e-17  Score=128.08  Aligned_cols=172  Identities=22%  Similarity=0.134  Sum_probs=124.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEE-eccccCCCCcccccCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIY-LIDVDTSSAVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~   79 (186)
                      ++++|+++++.++.+...+|.++++|+.|+|++|.  +   .+.++ ..|.++++++++. +.+|++....++.|..+++
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i---~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~  105 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--V---LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  105 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT--T---CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC--C---CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence            57899999999987777789999999999999998  3   34343 3466777777644 4567777766778889999


Q ss_pred             CCeEeecccccccccc---------------------CCCC--CCCC-CcccEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 038090           80 LIYLSISECSSQDLFG---------------------YLPK--SQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL  135 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~---------------------~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  135 (186)
                      |++|++++|.+.....                     .++.  +..+ ..++.|++++|.+. .++.......+++.+++
T Consensus       106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEEC
T ss_pred             cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhh
Confidence            9999998886652211                     1111  2222 24667788888876 45555555677888888


Q ss_pred             CC-CcCCCCCch-hhhccCCCCEEeccCCcccccCChhHHHhCCCCCC
Q 038090          136 SD-NGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVA  181 (186)
Q Consensus       136 ~~-n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~  181 (186)
                      .+ |.+. .+|. .|..+++|++|++++|+++ .+|......+..+..
T Consensus       185 ~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          185 SDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA  230 (350)
T ss_dssp             TTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEEC
T ss_pred             ccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhh
Confidence            75 5555 6765 5788999999999999998 898876666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=1.8e-16  Score=129.00  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             CEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090          131 EDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       131 ~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      +.|++++|.++ .+|..+..+++|++|++++|++++.+|..+
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            44444444444 344444444444444444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.5e-18  Score=142.85  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCC
Q 038090           49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNL  127 (186)
Q Consensus        49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l  127 (186)
                      .+..+..|+.|++++|.+. .+|..+..+++|++|++++|.+   . .+|. +..+++|+.|++++|.+. .+|..++.+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l---~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL---T-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC---S-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC---c-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444445555555555444 2333333444555555555422   2 3333 444445555555555544 444444445


Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChh
Q 038090          128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS  171 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~  171 (186)
                      ++|++|+|++|.+. .+|..++.+++|++|++++|.+++.+|..
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            55555555555444 44444444555555555555554444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=1.5e-16  Score=107.89  Aligned_cols=126  Identities=21%  Similarity=0.266  Sum_probs=84.9

Q ss_pred             CCccceEEeccccCC-CCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090           53 LTNLIEIYLIDVDTS-SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE  131 (186)
Q Consensus        53 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  131 (186)
                      .++++.|++++|.+. +..|..+..+++|++|++++|.+...    ..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            356777777777766 45566667777777777777744322    2266777777777777777755666666677788


Q ss_pred             EEEcCCCcCCCC-CchhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCCC
Q 038090          132 DRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVALS  183 (186)
Q Consensus       132 ~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l~  183 (186)
                      +|++++|.+.+. .+..++.+++|++|++++|.++ .+|.   .....+|.+..|+
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEET
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCccccc
Confidence            888888877731 2256777778888888888777 5554   4455677665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=3.9e-16  Score=124.22  Aligned_cols=141  Identities=18%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|+++++.+...  +.+..+++|+.|++++|.  +    ..++  +..+++|++|++++|.+.+. +  ++.+++|+
T Consensus        43 ~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~--l----~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN--I----TTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSC--C----SCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             CCCEEEccCCCcccC--hhhcccCCCCEEEccCCc--C----CeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            578888888887754  367888889999999888  3    2233  67788888888888887764 2  77888888


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +|++++|.++.    ++ +..+++|+.|++++|.+.+ ++  ++.+++|++|++++|...+.+  .++.+++|++|++++
T Consensus       110 ~L~L~~N~l~~----l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          110 YLNCDTNKLTK----LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             EEECCSSCCSC----CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             EEECCCCcCCe----ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            88888885432    22 5677777888887777764 22  555666666666666443333  244555566666666


Q ss_pred             Cccc
Q 038090          162 CNIL  165 (186)
Q Consensus       162 n~~~  165 (186)
                      |.++
T Consensus       180 n~l~  183 (457)
T 3bz5_A          180 NKIT  183 (457)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            5555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=1.8e-17  Score=128.15  Aligned_cols=166  Identities=17%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccchhH----HHHcC-CccceEEeccccCCCCcc
Q 038090            2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSGLSN----LAKKL-TNLIEIYLIDVDTSSAVS   71 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~   71 (186)
                      +|++|++++|.+....+..++.+     ++|++|++++|.  +   ....+.    .+..+ ++|++|++++|.+.+..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF--L---SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--G---GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc--C---ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            68899999999888778888876     999999999999  4   333333    34445 899999999999886555


Q ss_pred             cc----cCCC-CCCCeEeecccccccccc-CCCC-CCCCC-cccEEEccCCcCCCCCCccc----CCC-CCCCEEEcCCC
Q 038090           72 PT----LTNL-SSLIYLSISECSSQDLFG-YLPK-SQKGS-LLEDLRLSFTKFLGKIPPSL----GNL-TNLEDRYLSDN  138 (186)
Q Consensus        72 ~~----~~~l-~~L~~L~l~~~~l~~~~~-~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~L~~n  138 (186)
                      ..    +..+ .+|++|++++|.++.... .++. +...+ +|+.|++++|.+.+..+..+    ..+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            44    3343 589999999995542111 2222 33444 78899999888875555433    344 58888998888


Q ss_pred             cCCCC----Cchhhhc-cCCCCEEeccCCcccccCChhH
Q 038090          139 GFSGE----LPTSLGK-LNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus       139 ~~~~~----~~~~~~~-~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      .+.+.    ++..+.. .++|++|++++|.+.+..+..+
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence            88743    3444555 4588888888888874433333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=4.7e-17  Score=110.48  Aligned_cols=129  Identities=22%  Similarity=0.177  Sum_probs=107.2

Q ss_pred             hhcccCeeeCCCCCccccccc-cchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-C
Q 038090           23 RALQLGVLDLSYNHFAFKLQK-SGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S  100 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~  100 (186)
                      ..++++.|++++|.  +   . +.+|..+..+++|+.|++++|.+.+.  ..++.+++|++|++++|.   +.+.+|. +
T Consensus        15 ~~~~l~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~---i~~~~~~~~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSR--S---NEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR---VSGGLEVLA   84 (149)
T ss_dssp             CGGGCSEEECTTCB--C---BTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC---CCSCTHHHH
T ss_pred             CCccCeEEEccCCc--C---ChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc---ccchHHHHh
Confidence            35789999999999  4   3 46777778899999999999998865  788999999999999994   4444666 6


Q ss_pred             CCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCc---hhhhccCCCCEEeccC
Q 038090          101 QKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELP---TSLGKLNSLKTFDISS  161 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~l~l~~  161 (186)
                      ..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            6789999999999999742 33778899999999999999994433   3688999999999863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=5.1e-16  Score=123.51  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|++++|.+...   .+..+++|++|++++|.  +   .+ ++  +..+++|++|++++|.+++. +  ++.+++|+
T Consensus        65 ~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~--l---~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~  130 (457)
T 3bz5_A           65 GLTKLICTSNNITTL---DLSQNTNLTYLACDSNK--L---TN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLT  130 (457)
T ss_dssp             TCSEEECCSSCCSCC---CCTTCTTCSEEECCSSC--C---SC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             CCCEEEccCCcCCeE---ccccCCCCCEEECcCCC--C---ce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCC
Confidence            456666666665543   14556666666666665  2   11 22  44555566666655555542 2  44555555


Q ss_pred             eEeeccccc
Q 038090           82 YLSISECSS   90 (186)
Q Consensus        82 ~L~l~~~~l   90 (186)
                      +|++++|.+
T Consensus       131 ~L~l~~N~l  139 (457)
T 3bz5_A          131 YLNCARNTL  139 (457)
T ss_dssp             EEECTTSCC
T ss_pred             EEECCCCcc
Confidence            555555533

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=3.2e-16  Score=108.40  Aligned_cols=124  Identities=23%  Similarity=0.333  Sum_probs=105.0

Q ss_pred             CCccceEEeccccCC-CCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090           53 LTNLIEIYLIDVDTS-SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE  131 (186)
Q Consensus        53 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  131 (186)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+...    ..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            488999999999988 56787889999999999999965433    3378899999999999999876888777899999


Q ss_pred             EEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCC
Q 038090          132 DRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVAL  182 (186)
Q Consensus       132 ~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l  182 (186)
                      +|++++|.++ .++  ..+..+++|++|++++|.++ .+|.   .....+|.+..|
T Consensus        99 ~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           99 HLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             EEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEE
T ss_pred             EEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEe
Confidence            9999999999 544  67889999999999999998 7776   455578876544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=7.1e-17  Score=134.97  Aligned_cols=144  Identities=19%  Similarity=0.118  Sum_probs=118.9

Q ss_pred             hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090           18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL   97 (186)
Q Consensus        18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   97 (186)
                      +..+..+..|+.|+|++|.  +    ..++..+..+++|+.|++++|.++ .+|..|+.+++|++|++++|.+   . .+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~--l----~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l---~-~l  285 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ--I----FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL---T-SL  285 (727)
T ss_dssp             -----CCCCCCEEECTTSC--C----SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC---S-SC
T ss_pred             hhhhccCCCCcEEECCCCC--C----CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC---C-cc
Confidence            5567889999999999999  3    466666778999999999999998 6788899999999999999954   3 66


Q ss_pred             CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC-CCCEEeccCCcccccCChhHH
Q 038090           98 PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN-SLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus        98 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      |. +..+++|+.|++++|.+. .+|..|+.+++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|.++.
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            77 899999999999999997 7898899999999999999999987777765442 233578999999999998664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=3.9e-16  Score=127.04  Aligned_cols=152  Identities=20%  Similarity=0.219  Sum_probs=122.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++++|.+... +   ..+++|+.|++++|.  +    ..+|. +.+  +|+.|++++|.+++ +|.   .+++|+
T Consensus        81 ~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~--l----~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~  143 (571)
T 3cvr_A           81 QITVLEITQNALISL-P---ELPASLEYLDACDNR--L----STLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLE  143 (571)
T ss_dssp             TCSEEECCSSCCSCC-C---CCCTTCCEEECCSSC--C----SCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred             CCCEEECcCCCCccc-c---cccCCCCEEEccCCC--C----CCcch-hhc--CCCEEECCCCcCCC-CCC---cCcccc
Confidence            589999999998854 3   468999999999999  3    33555 443  99999999999987 555   689999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC-------
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL-------  154 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L-------  154 (186)
                      +|++++|.++.    +|.  .+++|+.|++++|.+.+ +|. +.  ++|++|++++|.++ .+|. +..  +|       
T Consensus       144 ~L~Ls~N~l~~----lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L  209 (571)
T 3cvr_A          144 YINADNNQLTM----LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE  209 (571)
T ss_dssp             EEECCSSCCSC----CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred             EEeCCCCccCc----CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence            99999995532    454  56789999999999985 777 65  99999999999999 7777 554  67       


Q ss_pred             CEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          155 KTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       155 ~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      ++|++++|.++ .+|..++. ++.+  +.+++||
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~  241 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNP  241 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSS
T ss_pred             eEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCc
Confidence            99999999998 99999985 7765  5666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.3e-16  Score=110.83  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=111.6

Q ss_pred             CeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccc-ccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090           28 GVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL  105 (186)
Q Consensus        28 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~  105 (186)
                      +.++++++.      ...+|..+  ..+++.|++++|.+.+..+. .|..+++|++|++++|   .+.+..|. +..+++
T Consensus        11 ~~l~~s~~~------l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRG------LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSC------CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS---CCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCC------cCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC---CCCCcCHhHcCCccc
Confidence            789999999      34555433  24899999999999876554 4899999999999999   44555566 889999


Q ss_pred             ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090          106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP  169 (186)
Q Consensus       106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p  169 (186)
                      |+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+++++++|++.+..+
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999997777789999999999999999997778889999999999999999986555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=1e-15  Score=106.71  Aligned_cols=130  Identities=16%  Similarity=0.072  Sum_probs=78.7

Q ss_pred             cCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090           27 LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL  105 (186)
Q Consensus        27 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~  105 (186)
                      .+.++++++.      ...+|..  ..++|+.|++++|.+.+..+..+..+++|++|++++|.+   ....+. +..+++
T Consensus         9 ~~~l~~~~~~------l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKG------LTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSC------CSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTT
T ss_pred             CCEEEecCCC------CccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCc
Confidence            3556666666      2233322  135667777777766655555566677777777777633   222223 566667


Q ss_pred             ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEeccCCcccccC
Q 038090          106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKI  168 (186)
Q Consensus       106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~  168 (186)
                      |+.|++++|.+....+..+..+++|++|++++|.++ .++. .+..+++|+++++++|++.+..
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence            777777777776444455666777777777777776 3433 3466677777777777776443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=1.7e-18  Score=123.14  Aligned_cols=159  Identities=16%  Similarity=0.234  Sum_probs=111.6

Q ss_pred             hhHHhhcccCeeeCCCCCccccc-cccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090           19 SRVARALQLGVLDLSYNHFAFKL-QKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL   97 (186)
Q Consensus        19 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   97 (186)
                      ..+.....++.++++.+.+.... ....+|..+..+++|++|++++|.+.+ .| .+..+++|++|++++|.+.    .+
T Consensus        12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----~l   85 (198)
T 1ds9_A           12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----KI   85 (198)
T ss_dssp             HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC----SC
T ss_pred             HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc----cc
Confidence            34566777777777777731100 012233478888888888888888776 45 7778888888888888443    45


Q ss_pred             CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh----
Q 038090           98 PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT----  170 (186)
Q Consensus        98 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~----  170 (186)
                      |. +..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .++  ..+..+++|+++++++|.+.+..|.    
T Consensus        86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  162 (198)
T 1ds9_A           86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred             cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence            65 5666788888888888873 44 5677788888888888888 443  3577888888888888888755443    


Q ss_pred             -----hHHHhCCCCCCCCCCC
Q 038090          171 -----SLLIRLPPSVALSSTP  186 (186)
Q Consensus       171 -----~~~~~l~~~~~l~~~~  186 (186)
                           .+...+|.+..|+++|
T Consensus       163 ~~~~~~~~~~l~~L~~Ld~~~  183 (198)
T 1ds9_A          163 SEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             HHHHHHHHHHCSSCSEECCGG
T ss_pred             HHHHHHHHHhCCCcEEECCcc
Confidence                 3455778888877764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.7e-15  Score=107.22  Aligned_cols=125  Identities=16%  Similarity=0.110  Sum_probs=69.0

Q ss_pred             ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090            5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS   84 (186)
Q Consensus         5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   84 (186)
                      .++++++++... +..+  .++++.|++++|.  +    ..+|..+..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus        14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~--i----~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQ--F----TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             EEECTTSCCSSC-CSCC--CTTCCEEECCSSC--C----CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEEcCCCCCCcC-CCCC--CCCCCEEECCCCc--C----chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            455555555433 2222  2456666666666  2    24445556666666666666666655555566666666666


Q ss_pred             eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090           85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      +++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus        85 Ls~N~l---~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           85 LSYNRL---RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCC---CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcc---CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666633   222233 555666666666666665333334555666666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=2.5e-15  Score=123.47  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090          104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      ++|+.|++++|.+.+ +|   ..+++|+.|++++|.++ .+|.   .+++|++|++++|.++ .+|..+.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~  281 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI  281 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence            345555555555542 33   22344555555555544 3333   3345555555555555 5555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=2.8e-16  Score=109.60  Aligned_cols=132  Identities=15%  Similarity=0.114  Sum_probs=107.1

Q ss_pred             hHHhhcccCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090           20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP   98 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~   98 (186)
                      .+..+.+|+.|++++|.  +    ..++. +..+ ++|+.|++++|.+.+.  +.+..+++|++|++++|.+.   ...+
T Consensus        14 ~~~~~~~L~~L~l~~n~--l----~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---~~~~   81 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK--I----PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---RIGE   81 (176)
T ss_dssp             EEECTTSCEEEECTTSC--C----CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---EECS
T ss_pred             hcCCcCCceEEEeeCCC--C----chhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---ccCc
Confidence            34578899999999999  3    23443 4444 4999999999998864  68889999999999999543   2223


Q ss_pred             C-CCCCCcccEEEccCCcCCCCCCc--ccCCCCCCCEEEcCCCcCCCCCchh----hhccCCCCEEeccCCccc
Q 038090           99 K-SQKGSLLEDLRLSFTKFLGKIPP--SLGNLTNLEDRYLSDNGFSGELPTS----LGKLNSLKTFDISSCNIL  165 (186)
Q Consensus        99 ~-~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~~~L~~l~l~~n~~~  165 (186)
                      . +..+++|+.|++++|.+. .+|.  .+..+++|++|++++|.+. .+|..    +..+++|++++++.|...
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             chhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3 578899999999999996 5665  7888999999999999998 66664    889999999999999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.8e-15  Score=106.16  Aligned_cols=126  Identities=19%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             CeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcc
Q 038090           28 GVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLL  106 (186)
Q Consensus        28 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L  106 (186)
                      +.++++++.      ...+|..+  .++++.|++++|.++ .+|..|..+++|++|++++|.+   ....+. +..+++|
T Consensus        13 ~~l~~~~~~------l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i---~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKG------LKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI---STLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSC------CSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred             CEEEcCCCC------CCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC---CEeCHhHccCCCCC
Confidence            678999998      34455433  368999999999998 4678999999999999999954   343445 8899999


Q ss_pred             cEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          107 EDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       107 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+++++++|++.
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999999999777788999999999999999999433445889999999999999985

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=4.3e-15  Score=103.55  Aligned_cols=132  Identities=20%  Similarity=0.186  Sum_probs=105.3

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      .+.++++++++.... ..  -.++|+.|++++|.  +   ....+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus         9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNK--L---QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSC--C---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCc--c---cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            356788888876543 22  23799999999999  4   3334445788999999999999999776777899999999


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP  145 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  145 (186)
                      |++++|.+   ....+. +..+++|+.|++++|.+....+..+..+++|+++++++|.+.+..+
T Consensus        81 L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHENKL---QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCc---cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999954   333344 6889999999999999985555557889999999999999996544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=1.6e-17  Score=131.77  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CccceecccccccCcC----hhhHHhhcccCeeeCCCCCccccccccc----hhHHH-HcCCccceEEeccccCCCC---
Q 038090            2 SQRKINEQDFGVETSN----ISRVARALQLGVLDLSYNHFAFKLQKSG----LSNLA-KKLTNLIEIYLIDVDTSSA---   69 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~-~~l~~L~~L~l~~~~~~~~---   69 (186)
                      +|+.|++++|.+....    +..+..+++|+.|++++|.  +   ...    +.+.+ ..+++|++|++++|.++..   
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  274 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--L---GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG  274 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--C---HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--C---ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence            5777888888776542    4455667788888888877  3   221    11211 2356677777777766542   


Q ss_pred             -cccccCCCCCCCeEeeccccc
Q 038090           70 -VSPTLTNLSSLIYLSISECSS   90 (186)
Q Consensus        70 -~~~~~~~l~~L~~L~l~~~~l   90 (186)
                       ++..+..+++|++|++++|.+
T Consensus       275 ~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          275 DLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHhhCCCcceEECCCCCC
Confidence             344455566666666666643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=3.6e-17  Score=129.68  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             CccceecccccccCcChhhHHh-----hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-----c
Q 038090            2 SQRKINEQDFGVETSNISRVAR-----ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-----S   71 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~   71 (186)
                      +|+.|++++|.+.......++.     +++|+.|++++|.+.- .....++..+..+++|++|++++|.+....     +
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence            4555555555554333333332     3356666666655210 000013444555555666666555544321     1


Q ss_pred             cccCCCCCCCeEeecccc
Q 038090           72 PTLTNLSSLIYLSISECS   89 (186)
Q Consensus        72 ~~~~~l~~L~~L~l~~~~   89 (186)
                      ..+..+++|++|++++|.
T Consensus       250 ~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHTSTTCCCCEEECTTSC
T ss_pred             HHhcCCCCceEEECcCCC
Confidence            122235556666665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=1.7e-14  Score=114.59  Aligned_cols=55  Identities=24%  Similarity=0.320  Sum_probs=24.1

Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..   +++|++|++++|.+.
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCS
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCccc
Confidence            3444444444443 333 2444445555555555444 23321   234444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=2.1e-17  Score=117.48  Aligned_cols=150  Identities=20%  Similarity=0.097  Sum_probs=118.4

Q ss_pred             CccceecccccccCcChh------hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccC
Q 038090            2 SQRKINEQDFGVETSNIS------RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT   75 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   75 (186)
                      .++.++++.+.+....+.      .+..+++|++|++++|.  +    ..+| .+..+++|+.|++++|.+. .+|..+.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~--l----~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN--I----EKIS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE--E----SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC--C----cccc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            345566666666544444      89999999999999999  3    3366 7889999999999999988 4677777


Q ss_pred             CCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCch--------
Q 038090           76 NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPT--------  146 (186)
Q Consensus        76 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~--------  146 (186)
                      .+++|++|++++|.+..    +|.+..+++|+.|++++|.+.+..+ ..+..+++|+++++++|.+.+..|.        
T Consensus        91 ~~~~L~~L~L~~N~l~~----l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  166 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR  166 (198)
T ss_dssp             HHHHCSEEEEEEEECCC----HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred             cCCcCCEEECcCCcCCc----CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence            88999999999996543    3346778899999999999974222 4688999999999999999754433        


Q ss_pred             --hhhccCCCCEEeccCCccc
Q 038090          147 --SLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       147 --~~~~~~~L~~l~l~~n~~~  165 (186)
                        .+..+++|++++  +|.++
T Consensus       167 ~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          167 IEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHhCCCcEEEC--CcccC
Confidence              278899999998  67765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=1.3e-14  Score=101.11  Aligned_cols=126  Identities=16%  Similarity=0.105  Sum_probs=101.8

Q ss_pred             HHcCCccceEEeccccCCCCcccccCCCC-CCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090           50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLS-SLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLT  128 (186)
Q Consensus        50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  128 (186)
                      +..+.+|+.|++++|.+.. .+. +..+. +|++|++++|.++..    +.+..+++|+.|++++|.+....+..+..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3457899999999999885 454 55554 999999999966543    3478899999999999999844334458899


Q ss_pred             CCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCChh---HHHhCCCCCCCC
Q 038090          129 NLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIPTS---LLIRLPPSVALS  183 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p~~---~~~~l~~~~~l~  183 (186)
                      +|++|++++|.+. .+|.  .+..+++|+++++++|.++ .+|..   +...+|.+..|+
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence            9999999999997 6776  7889999999999999998 88876   455788776553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=1.8e-14  Score=114.52  Aligned_cols=120  Identities=20%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGS  104 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  104 (186)
                      ++|++|++++|.  +    ..+| .+.++++|++|++++|.+.+ .|..+   .+|++|++++|.++.    +|.++.++
T Consensus       131 ~~L~~L~L~~n~--l----~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~----l~~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQ--L----EKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE----LPELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSC--C----SSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS----CCCCTTCT
T ss_pred             CCCCEEECcCCC--C----CCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc----CccccCCC
Confidence            355555555555  2    1233 24455555555555555443 22221   245555555553221    23344445


Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      +|+.|++++|.+.+ +|...   ++|++|++++|.+. .+|. ++.+++|+++++++|.++
T Consensus       196 ~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          196 FLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence            55555555554442 22211   34555555555444 4442 444555555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=3.9e-14  Score=116.42  Aligned_cols=85  Identities=25%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             CCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEE
Q 038090           78 SSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTF  157 (186)
Q Consensus        78 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l  157 (186)
                      ++|++|++++|.++.    +|  ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|
T Consensus       221 ~~L~~L~Ls~N~L~~----lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLTS----LP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCSC----CC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCEEEccCCccCc----CC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            567778888774432    33  34578999999999998 5665   5689999999999999 889999999999999


Q ss_pred             eccCCcccccCChhHH
Q 038090          158 DISSCNILGKIPTSLL  173 (186)
Q Consensus       158 ~l~~n~~~~~~p~~~~  173 (186)
                      ++++|++++..|..+.
T Consensus       290 ~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          290 NLEGNPLSERTLQALR  305 (622)
T ss_dssp             ECCSCCCCHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHH
Confidence            9999999987777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=2.1e-16  Score=122.64  Aligned_cols=168  Identities=15%  Similarity=0.108  Sum_probs=124.5

Q ss_pred             CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccc-hhHHHHcCCccceEEeccccCCCCccccc-
Q 038090            2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSG-LSNLAKKLTNLIEIYLIDVDTSSAVSPTL-   74 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-   74 (186)
                      .|+.|++++|.+.......++.+     ++|+.|++++|.  +   ... .......+.+|+.|++++|.+.......+ 
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--L---DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--C---CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--C---CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            57899999999887667777665     799999999999  3   332 33334456789999999998875433333 


Q ss_pred             ----CCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCC-
Q 038090           75 ----TNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGE-  143 (186)
Q Consensus        75 ----~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~-  143 (186)
                          ...++|++|++++|.++... ..++. +...++|+.|++++|.+.+.    ++..+...++|++|++++|.+.+. 
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence                34678999999999654211 12333 46788899999999998743    245566778999999999999853 


Q ss_pred             ---CchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090          144 ---LPTSLGKLNSLKTFDISSCNILGKIPTSLLI  174 (186)
Q Consensus       144 ---~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~  174 (186)
                         ++..+..+++|++|++++|.+.+.....+.+
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence               3344567799999999999998655555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=3.7e-15  Score=121.41  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGS  104 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  104 (186)
                      ..|+.|++++|.  +    ..+|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.++.    +|.++.++
T Consensus       441 ~~L~~L~Ls~n~--l----~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~----lp~l~~l~  508 (567)
T 1dce_A          441 ADVRVLHLAHKD--L----TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN----VDGVANLP  508 (567)
T ss_dssp             TTCSEEECTTSC--C----SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC----CGGGTTCS
T ss_pred             cCceEEEecCCC--C----CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC----CcccCCCC
Confidence            468999999999  3    34665 889999999999999998 678899999999999999996543    45688999


Q ss_pred             cccEEEccCCcCCCCC-CcccCCCCCCCEEEcCCCcCCCCCch---hhhccCCCCEEec
Q 038090          105 LLEDLRLSFTKFLGKI-PPSLGNLTNLEDRYLSDNGFSGELPT---SLGKLNSLKTFDI  159 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~l~l  159 (186)
                      +|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+.   .+..+++|+.|++
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999998665 99999999999999999999954332   2345889999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=9.3e-13  Score=91.26  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCC
Q 038090           26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGS  104 (186)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~  104 (186)
                      ..+.++++++.  +    ..+|..+  ..+|+.|++++|.+++..+..|..+++|++|++++|.+   ....+. +..++
T Consensus        10 ~~~~l~~s~n~--l----~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKS--L----ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL---TVLPAGVFDKLT   78 (170)
T ss_dssp             ETTEEECTTSC--C----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCT
T ss_pred             CCCEEEeCCCC--c----CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc---CccChhhccCCC
Confidence            35778888887  2    3444333  37788888888888877677788888888888888843   332333 56777


Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE  143 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  143 (186)
                      +|+.|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            888888888887755555677788888888888877744

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=6.8e-14  Score=114.07  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             ccceeccccc-ccCcChhh-HHhhcccCeeeCCCCCccccccccc----hhHHHHcCCccceEEeccccCCCC----ccc
Q 038090            3 QRKINEQDFG-VETSNISR-VARALQLGVLDLSYNHFAFKLQKSG----LSNLAKKLTNLIEIYLIDVDTSSA----VSP   72 (186)
Q Consensus         3 L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~   72 (186)
                      |+.|++.+|. +....... +..|++|++|++++|.  +   .+.    ++.....+++|++|++++|.+.+.    .+.
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~---~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  214 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--F---SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET  214 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE--E---ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc--c---cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence            5555555553 22111111 2255556666666555  2   111    333344455555555555544311    122


Q ss_pred             ccCCCCCCCeEeeccc
Q 038090           73 TLTNLSSLIYLSISEC   88 (186)
Q Consensus        73 ~~~~l~~L~~L~l~~~   88 (186)
                      .+..+++|++|++++|
T Consensus       215 ~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          215 IARNCRSLVSVKVGDF  230 (592)
T ss_dssp             HHHHCTTCCEEECSSC
T ss_pred             HHhhCCCCcEEeccCc
Confidence            2334455555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=1.7e-14  Score=117.63  Aligned_cols=176  Identities=14%  Similarity=0.120  Sum_probs=107.7

Q ss_pred             CccceecccccccCcChhhHHh-hc-ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC----cccccC
Q 038090            2 SQRKINEQDFGVETSNISRVAR-AL-QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA----VSPTLT   75 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~   75 (186)
                      +|+.|++++|.+.......++. ++ +|+.|++++|.  . .....++.....+++|++|++++|.+.+.    ++..+.
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~--~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--G-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE--E-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC--C-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4677788877766555566665 33 48888888876  1 11334455556788899999988877654    233455


Q ss_pred             CCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCCCccc---------------------------CC
Q 038090           76 NLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKIPPSL---------------------------GN  126 (186)
Q Consensus        76 ~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------~~  126 (186)
                      .+++|++|++++|.+.... ..++. +..+++|+.|++++|.+.+ ++..+                           ..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            6788999999888543111 23333 4567788888888776542 23223                           33


Q ss_pred             CCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCC
Q 038090          127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL  182 (186)
Q Consensus       127 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l  182 (186)
                      +++|+.+++..+... .++..+..+++|++|++++|.+++.....+...++.+..|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L  323 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL  323 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence            344444444443222 4555566777888888888877655444444556655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.1e-12  Score=91.27  Aligned_cols=105  Identities=14%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             cCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090           27 LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL  105 (186)
Q Consensus        27 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~  105 (186)
                      -+.++++++.      ...+|..+  ..+|+.|++++|.+.+..|..|..+++|++|++++|.++   .-.+. +..+++
T Consensus        14 ~~~l~~~~n~------l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIR------LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT---AIPTGVFDKLTQ   82 (174)
T ss_dssp             SSEEECCSSC------CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTT
T ss_pred             CcEEEeCCCC------CCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---ccChhHhCCcch
Confidence            3678888888      34455433  278888888888888777778888888888888888543   22223 577888


Q ss_pred             ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090          106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG  142 (186)
Q Consensus       106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  142 (186)
                      |+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8888888888875444457788888888888888874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=1.3e-13  Score=105.15  Aligned_cols=99  Identities=15%  Similarity=0.136  Sum_probs=69.0

Q ss_pred             CCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCC-EEEcCCCcCCCCCchhhhccCC
Q 038090           77 LSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE-DRYLSDNGFSGELPTSLGKLNS  153 (186)
Q Consensus        77 l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~  153 (186)
                      +++|+.+++++|.+.    .++.  +..+++|+.+++..+ +....+..|..+.+|+ .+++.+ .++.-.+.+|..|++
T Consensus       225 ~~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            456777777776432    2333  677788888888776 5545556777888888 888887 555233466888888


Q ss_pred             CCEEeccCCcccccCChhHHHhCCCCCCC
Q 038090          154 LKTFDISSCNILGKIPTSLLIRLPPSVAL  182 (186)
Q Consensus       154 L~~l~l~~n~~~~~~p~~~~~~l~~~~~l  182 (186)
                      |+.+++.+|.++ .++...+..++.+..+
T Consensus       299 L~~l~l~~n~i~-~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          299 LRYVLATGDKIT-TLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred             CCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence            888888888887 8887776677766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=4.9e-13  Score=92.66  Aligned_cols=105  Identities=15%  Similarity=0.082  Sum_probs=76.3

Q ss_pred             ccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090           55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR  133 (186)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  133 (186)
                      ..+.++++++.+.. +|..+.  +++++|++++|.   +.+..+. +..+++|+.|++++|.+....+..|..+++|++|
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            35677888887774 454442  678888888884   3444455 7778888888888888875555566788888888


Q ss_pred             EcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090          134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      ++++|.+++..+..+..+++|++|++++|++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            88888888433345778888888888888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=9.3e-13  Score=91.63  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             cceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090           56 LIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY  134 (186)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  134 (186)
                      -+.++++++.+.. +|..+.  ++|++|++++|.   +.+..|. +..+++|+.|++++|.+....+..|..+++|++|+
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            3677888887763 555443  778888888884   3444455 77888888888888888754445567888888888


Q ss_pred             cCCCcCCCCCch-hhhccCCCCEEeccCCcccccCCh
Q 038090          135 LSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus       135 L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      +++|.+. .++. .+..+++|++|++++|++. ..+.
T Consensus        88 L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           88 LNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             CCCCccc-eeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            8888888 4444 4778888888888888876 4443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=4e-13  Score=103.24  Aligned_cols=162  Identities=17%  Similarity=0.096  Sum_probs=108.6

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcc-cccCCCCCCC
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSLI   81 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~   81 (186)
                      +.++.++++++.+ |..+  .+++++|++++|.  +    ..++ ..|.++++|++|++++|.+.+.++ ..|.++++++
T Consensus        12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~--i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTK--L----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             TEEEEESTTCCSC-CTTC--CTTCSEEEEESCC--C----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             CEEEecCCCCCcc-CcCc--CCCCCEEEccCCc--C----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            3456666666644 3433  3689999999999  3    4454 458999999999999999876554 5688999887


Q ss_pred             eEe-eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCC-------------------------C-CCCCEE
Q 038090           82 YLS-ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGN-------------------------L-TNLEDR  133 (186)
Q Consensus        82 ~L~-l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------l-~~L~~L  133 (186)
                      ++. ...|.+   ..-.+. +..+++|+.|++++|.+....+..+..                         + ..++.|
T Consensus        83 ~~l~~~~N~l---~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           83 EIRIEKANNL---LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             EEEEEEETTC---CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhcccCCcc---cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence            654 555643   333345 788999999999998876332222211                         2 245667


Q ss_pred             EcCCCcCCCCCchhhhccCCCCEEeccC-CcccccCChhHHHhCCCC
Q 038090          134 YLSDNGFSGELPTSLGKLNSLKTFDISS-CNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~p~~~~~~l~~~  179 (186)
                      ++++|+++ .++.......+|+++++.+ |.+. .+|...+..++.+
T Consensus       160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L  204 (350)
T 4ay9_X          160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGP  204 (350)
T ss_dssp             ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECC
T ss_pred             cccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCccc
Confidence            77777777 5555554556677777764 4554 7777665555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=1.3e-13  Score=112.36  Aligned_cols=109  Identities=24%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CccceecccccccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccccc----CC
Q 038090            2 SQRKINEQDFGVETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTL----TN   76 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~   76 (186)
                      +|++|++++|.+.......+. .+++|+.|++++|.. +  ....++.....+++|++|++++|.+.+..+..+    ..
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-F--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-E--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-C--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            466777777766554455554 577777777777731 1  022244455567777777777776554333222    35


Q ss_pred             CCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCC
Q 038090           77 LSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFT  114 (186)
Q Consensus        77 l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~  114 (186)
                      +++|++|++++|. ..+.. .+.. ...+++|+.|++++|
T Consensus       183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5677777777763 00111 1111 234566666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.2e-11  Score=94.13  Aligned_cols=101  Identities=11%  Similarity=0.043  Sum_probs=84.6

Q ss_pred             CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCccc-EEEccCCcCCCCCCcccCCCCC
Q 038090           53 LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLE-DLRLSFTKFLGKIPPSLGNLTN  129 (186)
Q Consensus        53 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~  129 (186)
                      +.+|+.+++.+|.+....+..|..+.+|+.+++..| +    ..++.  +..+++|+ .+++.. .+....+..|..|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i----~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L----KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C----CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c----ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            789999999999888766778999999999999987 3    23343  88999999 999988 665456788999999


Q ss_pred             CCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090          130 LEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus       130 L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      |+.+++.+|.+..-.+..|..+++|+.++.
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999998444457899999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.24  E-value=2.1e-13  Score=111.16  Aligned_cols=77  Identities=17%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             CCcccEEEccCCcCCCCCCccc-CCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090          103 GSLLEDLRLSFTKFLGKIPPSL-GNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       103 ~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++....+.+...+|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l  533 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL  533 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence            4555666666555543322222 3456666666666666422222 233456666666666666544444454455543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=4.9e-11  Score=91.27  Aligned_cols=91  Identities=24%  Similarity=0.235  Sum_probs=40.7

Q ss_pred             hhHHHHcCCccceEEecc-ccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc
Q 038090           46 LSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS  123 (186)
Q Consensus        46 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~  123 (186)
                      +|. +..+.+|+.|++++ |.+.+..+..|..+++|++|++++|   .+.+..|. +..+++|+.|++++|.+....+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence            444 44444455555543 4444433344555555555555555   22222233 444455555555555544222222


Q ss_pred             cCCCCCCCEEEcCCCcCC
Q 038090          124 LGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus       124 ~~~l~~L~~L~L~~n~~~  141 (186)
                      +..+. |+.|++.+|.+.
T Consensus       100 ~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          100 VQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TCSCC-CCEEECCSSCCC
T ss_pred             cccCC-ceEEEeeCCCcc
Confidence            22222 555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.3e-13  Score=103.49  Aligned_cols=159  Identities=17%  Similarity=0.110  Sum_probs=108.8

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCccccc-CCCCCCCeEeecccccccccc-
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVSPTL-TNLSSLIYLSISECSSQDLFG-   95 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~-   95 (186)
                      -+++|+.|++++|.  +   .......+..+     .+|++|++++|.+.......+ ..+.+|++|++++|.++.... 
T Consensus        70 ~~~~L~~L~Ls~n~--l---~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           70 VLSSLRQLNLAGVR--M---TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHTTCCEEECTTSC--C---CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHhhCCEEEecCCC--C---CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            35789999999999  4   33323333332     699999999998875333333 346789999999996542111 


Q ss_pred             CCCC-C-CCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEeccCCccc
Q 038090           96 YLPK-S-QKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus        96 ~~~~-~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      .+.. + ...++|+.|++++|.+.+.    ++..+..+++|++|+|++|.+.+.    ++..+..+++|++|++++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            1111 2 3467899999999998643    344456789999999999998743    3455677889999999999998


Q ss_pred             ccCChhHHH---hCCCC--CCCCCCC
Q 038090          166 GKIPTSLLI---RLPPS--VALSSTP  186 (186)
Q Consensus       166 ~~~p~~~~~---~l~~~--~~l~~~~  186 (186)
                      +.....+..   ..+.+  .+|++|+
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            544444433   33544  4555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=7.1e-11  Score=90.39  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             ceEEeccc-cCCCCcccccCCCCCCCeEeecc-ccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090           57 IEIYLIDV-DTSSAVSPTLTNLSSLIYLSISE-CSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR  133 (186)
Q Consensus        57 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  133 (186)
                      ..++.+++ .++. +|. +..+.+|++|++++ |.+   ..-.+. +..+++|+.|++++|.+.+..|..|..+++|++|
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            35677777 7775 677 99999999999996 844   333334 8899999999999999998788889999999999


Q ss_pred             EcCCCcCCCCCchh-hhccCCCCEEeccCCccc
Q 038090          134 YLSDNGFSGELPTS-LGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       134 ~L~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~  165 (186)
                      +|++|.+. .+|.. +..++ |++|++.+|.+.
T Consensus        86 ~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999999 55554 44444 999999999986

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.14  E-value=1.4e-11  Score=95.18  Aligned_cols=131  Identities=17%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             CCccceEEeccccCCCCcccccC--CCCCCCeEeeccc--ccccc--ccCCCC-C--CCCCcccEEEccCCcCCCCCCcc
Q 038090           53 LTNLIEIYLIDVDTSSAVSPTLT--NLSSLIYLSISEC--SSQDL--FGYLPK-S--QKGSLLEDLRLSFTKFLGKIPPS  123 (186)
Q Consensus        53 l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~l~~~--~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~~~  123 (186)
                      .++|++|++..+.+.......++  .+++|++|+++.+  .....  ...+.. +  ..+++|+.|++.+|.+.+..+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            45566666555544322222222  4666666666421  00000  000111 1  23566777777766654322222


Q ss_pred             c---CCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCCC
Q 038090          124 L---GNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALS  183 (186)
Q Consensus       124 ~---~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l~  183 (186)
                      +   ..+++|++|+++.|.+.+.    ++..+..+++|+.|++++|.+++..-..+.+.+..-..++
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~  338 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS  338 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEec
Confidence            2   2456777777777766643    2223345677777777777776555555554444333443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=1.5e-09  Score=84.93  Aligned_cols=159  Identities=15%  Similarity=0.062  Sum_probs=77.5

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      |+.+.+.. .+..+...+|..|.+|+.+++++|.+      ..++...-...+|+.+.+..+ +.......|..+.+|+.
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l------~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~  230 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI------TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKT  230 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC------SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc------eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence            44444443 34444455677777777777777662      122211111355555555533 33333445556666666


Q ss_pred             Eeecccccccc------------------ccCCCC--CCCCCcccEEEccCCcCC-----CCCCcccCCCCCCCEEEcCC
Q 038090           83 LSISECSSQDL------------------FGYLPK--SQKGSLLEDLRLSFTKFL-----GKIPPSLGNLTNLEDRYLSD  137 (186)
Q Consensus        83 L~l~~~~l~~~------------------~~~~~~--~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~  137 (186)
                      +.+..+ +..+                  ...++.  +..+++|+.+.+.++.+.     ......|..|++|+.+.+.+
T Consensus       231 l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          231 IEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             EECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             EecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            665443 1100                  111222  455566666666554432     12334555666666666663


Q ss_pred             CcCCCCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090          138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL  173 (186)
Q Consensus       138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~  173 (186)
                      + +..-....|..|.+|+.+.+..+ ++ .+....+
T Consensus       310 ~-i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF  342 (401)
T 4fdw_A          310 S-IRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAF  342 (401)
T ss_dssp             T-CCEECTTTTTTCCSCCEEEECTT-CC-EECTTSS
T ss_pred             c-eEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhC
Confidence            2 33122334556666666666433 44 4444333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=6.3e-09  Score=81.38  Aligned_cols=148  Identities=9%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccc-ccccC
Q 038090           18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQ-DLFGY   96 (186)
Q Consensus        18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~   96 (186)
                      ..+|.+|.+|+.+++..+-      ..--...|.+ .+|+.+.+.+ .+.......|..+.+|+.+.+.++... .....
T Consensus       219 ~~aF~~~~~L~~l~l~~~l------~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~  290 (401)
T 4fdw_A          219 SQAFLKTSQLKTIEIPENV------STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM  290 (401)
T ss_dssp             TTTTTTCTTCCCEECCTTC------CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred             hhHhhCCCCCCEEecCCCc------cCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence            3444555555555555432      1111112333 4566666632 334344567889999999999887432 00112


Q ss_pred             CCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090           97 LPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI  174 (186)
Q Consensus        97 ~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~  174 (186)
                      ++.  +..|++|+.+.+.. .+.......|..|.+|+.+.+..+ +..-...+|..+ +|+.+++.+|.+. .++...+.
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~  366 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWY  366 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccccccc
Confidence            443  78999999999984 455455678889999999999766 442334568888 9999999999887 66665554


Q ss_pred             hCC
Q 038090          175 RLP  177 (186)
Q Consensus       175 ~l~  177 (186)
                      .++
T Consensus       367 ~~~  369 (401)
T 4fdw_A          367 GFP  369 (401)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=8.9e-09  Score=79.44  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             hHHhhcccCeeeCCCCCcc---c-cccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc
Q 038090           20 RVARALQLGVLDLSYNHFA---F-KLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG   95 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~---~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   95 (186)
                      ++..+++|+.|.+.+....   + +.....+...+..+++|+.|.++++.-. ..+. + .+++|++|++..+.+.   .
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~---~  207 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP---D  207 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC---H
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC---h
Confidence            3567899999999776410   0 0111236667788999999999987312 2333 3 3889999999988542   2


Q ss_pred             CCCC-C--CCCCcccEEEccC--CcCCCC-----CCccc--CCCCCCCEEEcCCCcCCCCCchhhh---ccCCCCEEecc
Q 038090           96 YLPK-S--QKGSLLEDLRLSF--TKFLGK-----IPPSL--GNLTNLEDRYLSDNGFSGELPTSLG---KLNSLKTFDIS  160 (186)
Q Consensus        96 ~~~~-~--~~~~~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~---~~~~L~~l~l~  160 (186)
                      .... +  ..+++|+.|+++.  +...+.     +...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+++
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            2112 2  3678899998853  221111     11122  2478999999999988754443343   57899999999


Q ss_pred             CCcccccCChhHHH---hCCCCC
Q 038090          161 SCNILGKIPTSLLI---RLPPSV  180 (186)
Q Consensus       161 ~n~~~~~~p~~~~~---~l~~~~  180 (186)
                      +|.+.+..+..+..   .++.+.
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             CCCCChHHHHHHHhhcccCCcce
Confidence            99998655555542   345543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=1.6e-09  Score=75.96  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=44.6

Q ss_pred             CCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEc--CCCcCCCC----CchhhhccCCCCEEeccCCccc
Q 038090          101 QKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYL--SDNGFSGE----LPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      ...++|+.|++++|.+.+.    +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3445566666666666533    3445566678888998  77888743    3344566789999999999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=4.6e-08  Score=72.22  Aligned_cols=84  Identities=18%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CCCCcccEEEccCCcCCC--CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC--CCCEEeccCCcccccCCh------
Q 038090          101 QKGSLLEDLRLSFTKFLG--KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN--SLKTFDISSCNILGKIPT------  170 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~p~------  170 (186)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|+|++|.+.+ + ..+..++  +|++|++++|++++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            356789999999999986  344566688999999999999994 3 3355555  899999999999977773      


Q ss_pred             hHHHhCCCCCCCCCCC
Q 038090          171 SLLIRLPPSVALSSTP  186 (186)
Q Consensus       171 ~~~~~l~~~~~l~~~~  186 (186)
                      .+...+|.+..|++.+
T Consensus       245 ~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          245 AIRERFPKLLRLDGHE  260 (267)
T ss_dssp             HHHHHCTTCCEESSCB
T ss_pred             HHHHHCcccCeECCcC
Confidence            4567899999888753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=1.2e-08  Score=71.40  Aligned_cols=121  Identities=13%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             hHHhhcccCeeeCCCC-CccccccccchhHHHHcCCccceEEeccccCCCCc----ccccCCCCCCCeEeeccccccccc
Q 038090           20 RVARALQLGVLDLSYN-HFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV----SPTLTNLSSLIYLSISECSSQDLF   94 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~   94 (186)
                      .+..++.|+.|++++| .+.- .-...+...+....+|++|++++|.+....    ...+...++|++|++++|.+....
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4456789999999999 7310 001224555666789999999999887432    334555688999999999665211


Q ss_pred             c-CCCC-CCCCCcccEEEc--cCCcCCCCC----CcccCCCCCCCEEEcCCCcCC
Q 038090           95 G-YLPK-SQKGSLLEDLRL--SFTKFLGKI----PPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        95 ~-~~~~-~~~~~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~  141 (186)
                      . .+.+ +...++|+.|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            1 1233 667788999999  888887543    344555689999999999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=4.7e-08  Score=67.61  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             cccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccCCC----CCCCeEeeccccccccccCCCC
Q 038090           25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNL----SSLIYLSISECSSQDLFGYLPK   99 (186)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~l~~~~~~~~~   99 (186)
                      ..|+.||+++|.  +   ...-...+.++++|++|++++|. +++..-..++.+    ++|++|++++|.  .+++.-..
T Consensus        61 ~~L~~LDLs~~~--I---td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~--~ITD~Gl~  133 (176)
T 3e4g_A           61 YKIQAIDATDSC--I---MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG--NVTDKGII  133 (176)
T ss_dssp             CCEEEEEEESCC--C---CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT--TCCHHHHH
T ss_pred             ceEeEEeCcCCC--c---cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC--cCCHHHHH
Confidence            356777777776  3   33222344566777777777764 332222234443    357777777763  12221112


Q ss_pred             -CCCCCcccEEEccCCc
Q 038090          100 -SQKGSLLEDLRLSFTK  115 (186)
Q Consensus       100 -~~~~~~L~~L~l~~~~  115 (186)
                       +..+++|+.|++++|.
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence             4566677777777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=5.4e-08  Score=71.84  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             CCCEEEcCCCcCCCCCc-------hhhhccCCCCEEe
Q 038090          129 NLEDRYLSDNGFSGELP-------TSLGKLNSLKTFD  158 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~-------~~~~~~~~L~~l~  158 (186)
                      +|++|++.+|.+.+.+|       ..+..+++|+.||
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            67777777777765443       2356778888877

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=1.3e-07  Score=65.36  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCC----CCCCEEEcCCCc-CCCCCchhhhcc
Q 038090           79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNL----TNLEDRYLSDNG-FSGELPTSLGKL  151 (186)
Q Consensus        79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~~  151 (186)
                      .|++||+++|.++   ..-.. +..+++|+.|++++|. +++..-..+..+    ++|++|++++|. +++..-..+..+
T Consensus        62 ~L~~LDLs~~~It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCC---GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCcc---HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4666666666322   21112 5566667777777664 443333334443    368888888874 664444556778


Q ss_pred             CCCCEEeccCC-ccccc--CChhHHHhCCCC
Q 038090          152 NSLKTFDISSC-NILGK--IPTSLLIRLPPS  179 (186)
Q Consensus       152 ~~L~~l~l~~n-~~~~~--~p~~~~~~l~~~  179 (186)
                      ++|++|++++| .+++.  .-..+.+.+|.+
T Consensus       139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l  169 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL  169 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence            88888888887 45532  234455567764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=1e-05  Score=62.80  Aligned_cols=105  Identities=12%  Similarity=0.115  Sum_probs=43.8

Q ss_pred             HHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCC
Q 038090           50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNL  127 (186)
Q Consensus        50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l  127 (186)
                      |.++..|+.+.+...... .....|..+.+|+.+.+...     ...+++  +..+.+|+.+.+..+ +.......|..|
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-----i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-----ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-----CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCCCc-----ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            344445555554433211 22234444555555544322     112222  444455555554332 221223344555


Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090          128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      .+|+.+.+..+ ++.-...+|..|.+|+.+++.++
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            55555555433 22112234555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.88  E-value=5.6e-05  Score=58.21  Aligned_cols=139  Identities=14%  Similarity=0.048  Sum_probs=89.0

Q ss_pred             hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090           19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP   98 (186)
Q Consensus        19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~   98 (186)
                      ..+..+.+++.+.+..+-      ...-...+.++..|+.+.+..+ +.......|..+.+|+.+.+..+     ...++
T Consensus       211 ~~f~~~~~l~~i~~~~~~------~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-----i~~i~  278 (379)
T 4h09_A          211 YGFSYGKNLKKITITSGV------TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-----VKTVP  278 (379)
T ss_dssp             TTTTTCSSCSEEECCTTC------CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-----CSEEC
T ss_pred             cccccccccceeeeccce------eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-----ceecc
Confidence            344566777777776553      2222234566778888888664 33334456777888888887654     12233


Q ss_pred             C--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090           99 K--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus        99 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      .  +..+.+|+.+.+.++.+.......|..|.+|+.+.+..+ ++.-...+|..|.+|+.+.+..+ ++ .+...-
T Consensus       279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~a  351 (379)
T 4h09_A          279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGA  351 (379)
T ss_dssp             TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTT
T ss_pred             ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhH
Confidence            2  678888888888777666455677888888999888765 44122356778888888887543 44 444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.82  E-value=9.8e-05  Score=57.27  Aligned_cols=74  Identities=15%  Similarity=-0.023  Sum_probs=33.0

Q ss_pred             CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC
Q 038090          101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP  178 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~  178 (186)
                      ..+.+|+.+.+..+ +.......|..+.+|+.+++.++ ++.-...+|..|.+|+.+.+..+ ++ .+....+..++.
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~  367 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN  367 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred             cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence            34445555554332 22122344555555666655433 22112234555555665555443 43 444444334433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.79  E-value=8e-05  Score=57.76  Aligned_cols=127  Identities=13%  Similarity=0.064  Sum_probs=79.4

Q ss_pred             hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC
Q 038090           20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK   99 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~   99 (186)
                      ++..+..++.+.+..+.      .......+..+..++.+......   .....|..+.+|+.+.+..+     ...+.+
T Consensus       248 ~f~~~~~l~~~~~~~~~------~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-----i~~I~~  313 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNK------LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-----VKFIGE  313 (394)
T ss_dssp             TTTTCSSCCEEEECCTT------CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-----CCEECT
T ss_pred             cccccccceeEEcCCCc------ceeeccccccccccceeccCcee---eccccccccccccccccccc-----cceech
Confidence            34445555555555443      11111234445555555544432   12345777888888888665     223333


Q ss_pred             --CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090          100 --SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus       100 --~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                        +..+.+|+.+++..+ +.......|..|.+|+.+.+..+ +..-...+|..|.+|+.+++..+
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence              778899999998644 44345678889999999999877 54233456889999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.00063  Score=52.71  Aligned_cols=129  Identities=12%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090           18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL   97 (186)
Q Consensus        18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   97 (186)
                      ..+|..|..|+.+.+.++-      ..--...|.++..|+.+.+.. .+.......|..+.+|+.+.+..+     ...+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~------~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-----v~~I  325 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV------VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-----ITQI  325 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC------CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-----CCEE
T ss_pred             cceeeecccccEEeccccc------ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-----ccEe
Confidence            3455666777777766554      111122355666777777653 233333456667777777776554     1222


Q ss_pred             CC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           98 PK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        98 ~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      .+  +..|.+|+.+.+..+ +.......|..|.+|+.+++.++...   ...+..+.+|+.+.+..+
T Consensus       326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            22  566677777776433 33234456667777777777665432   123445566666665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.52  E-value=0.00073  Score=51.92  Aligned_cols=121  Identities=11%  Similarity=0.043  Sum_probs=79.4

Q ss_pred             HcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090           51 KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLT  128 (186)
Q Consensus        51 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  128 (186)
                      ....+++.+.+..+ +.......|..+..|+.+.+..+ +    ..+..  +..+.+++.+.+..+ +.......|..+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c----cEeCccccceeehhcccccccc-ceecccccccccc
Confidence            34455666665443 22233456777888888887665 1    12222  667788888887543 3323456788899


Q ss_pred             CCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCC
Q 038090          129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSV  180 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~  180 (186)
                      +|+.+.+.++.++.-....|..|.+|+.+.+..+ ++ .+...-+..+..+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~  336 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALS  336 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCC
Confidence            9999999988887333456889999999999654 65 77766555655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.19  E-value=9.5e-05  Score=51.94  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             CCccceEEeccc-cCCCC----cccccCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCC----C
Q 038090           53 LTNLIEIYLIDV-DTSSA----VSPTLTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKI----P  121 (186)
Q Consensus        53 l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~----~  121 (186)
                      -..|++|+++++ .+...    +.+.+..=..|++|++++|.+...- ..+.+ +..-+.|+.|++++|.+.+..    .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345555555553 33311    1223333345666666666443110 11122 344456777777777776432    2


Q ss_pred             cccCCCCCCCEEEcCCCcC---CC----CCchhhhccCCCCEEeccCCcc
Q 038090          122 PSLGNLTNLEDRYLSDNGF---SG----ELPTSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       122 ~~~~~l~~L~~L~L~~n~~---~~----~~~~~~~~~~~L~~l~l~~n~~  164 (186)
                      ..+..-+.|++|+|++|..   ..    .+.+.+...++|+.++++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3344446788888876533   21    1344566778899999988765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.12  E-value=0.0021  Score=41.93  Aligned_cols=59  Identities=17%  Similarity=0.135  Sum_probs=37.7

Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG  142 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  142 (186)
                      ..++.+++.++  ...+|. .-..+++.|++++|.+...-+..|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~--~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLT--WASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCC--TTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCc--cccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36667776432  013343 112357888888888875555566777888888888887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.69  E-value=0.001  Score=46.72  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             cCCCCCCCeEeeccc-ccccc-ccCCCC-CCCCCcccEEEccCCcCCCCCCcccC----CCCCCCEEEcCCCcCCCCC--
Q 038090           74 LTNLSSLIYLSISEC-SSQDL-FGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLG----NLTNLEDRYLSDNGFSGEL--  144 (186)
Q Consensus        74 ~~~l~~L~~L~l~~~-~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~L~~n~~~~~~--  144 (186)
                      +..-+.|++|+++++ .+... ...+.+ +..-+.|+.|++++|.+.+.....+.    .-+.|++|+|+.|.+.+..  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344578999999985 54311 012333 56677899999999999765444433    4478999999999998543  


Q ss_pred             --chhhhccCCCCEEeccCC
Q 038090          145 --PTSLGKLNSLKTFDISSC  162 (186)
Q Consensus       145 --~~~~~~~~~L~~l~l~~n  162 (186)
                        .+.+...+.|++|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence              344566778999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.68  E-value=0.0054  Score=39.93  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=16.0

Q ss_pred             CCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcc
Q 038090          129 NLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       129 ~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~  164 (186)
                      ++++|+|++|.++ .++ ..|..+++|++|++++|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3445555555554 332 2234444455555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 2e-10
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 111 LSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
           L   +  G +P  L  L  L    +S N   GE+P   G L        ++   L   P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171
            NL    L +N   G LP  L +L  L + ++S  N+ G+IP  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 88  CSSQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145
             +  ++G LP+   +   L  L +SF    G+I P  GNL   +    ++N      P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 16  SNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75
           S+I+ +     L  L L+ N          +  LA  LTNL ++ L +   S+     L+
Sbjct: 210 SDITPLGILTNLDELSLNGNQL------KDIGTLAS-LTNLTDLDLANNQISN--LAPLS 260

Query: 76  NLSSLIYLSISECSSQDL------------------FGYLPKSQKGSLLEDLRLSFTKFL 117
            L+ L  L +      ++                     +        L  L L F    
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 118 GKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
              P  + +LT L+  + ++N  S    +SL  L ++         I    P + L R+
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI 375

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 79  SLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138
           + + L  +  S       L K      L+ L  +  K       SL NLTN+       N
Sbjct: 310 TYLTLYFNNISDISPVSSLTK------LQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 139 GFSGELPTSLGKLNSLKTFDISS 161
             S   P  L  L  +    ++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 72  PTLTNLSSLIYLSISECSSQDL--FGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTN 129
             +++L+ L  L  +     D+     L        +  L     +     P  L NLT 
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVSSLANLTN------INWLSAGHNQISDLTP--LANLTR 374

Query: 130 LEDRYLSDN 138
           +    L+D 
Sbjct: 375 ITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 29/167 (17%)

Query: 27  LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSIS 86
             +LDL  N    +++     NL     NL  + LI+   S         L  L  L +S
Sbjct: 33  TALLDLQNNKIT-EIKDGDFKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 87  ECSSQDLFGYLPKSQK---------------------GSLLEDLRLSFTKFLGKIPPSLG 125
           +   ++L   +PK+ +                       ++ +L  +  K  G    +  
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 126 NLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
            +  L    ++D   +  +P  L    SL    +    I      SL
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASL 191

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 76  NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL 135
              SL  L++S     +L    P+      LE L  SF   L ++P    NL  L   ++
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPR------LERLIASFNH-LAEVPELPQNLKQL---HV 331

Query: 136 SDNGFSGELPTSLGKLNSLK 155
             N    E P     +  L+
Sbjct: 332 EYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164
             +L L+    L  +P    +L +L     S N  + ELP       SLK+  + + N+
Sbjct: 40  AHELELNNLG-LSSLPELPPHLESL---VASCNSLT-ELPELPQ---SLKSLLVDNNNL 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 106 LEDLRLSFTKFLGKIPPSL-GNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDIS 160
           ++ L +   +        L   L   +   L D G +      + ++L    +L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 161 SCNILGKIPTSLLIRLP 177
           S  +       +L  L 
Sbjct: 64  SNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 3e-04
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 13/97 (13%)

Query: 76  NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKF----LGKIPPSLGNLTNLE 131
           ++ SL  +   E S       LP  Q+    + +RL            I  +L     L 
Sbjct: 3   DIQSL-DIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 132 DRYLSDNGFSGELPTSLGKL-----NSLKTFDISSCN 163
           +  L  N         + +        ++   + +C 
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 76  NLSSLIYLSISECS-SQDLFGYLPKS-QKGSLLEDLRLSFTKFLGKIPPSLG-----NLT 128
             S L  L +++C  S      L  +      L +L LS           L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 129 NLEDRYLSDNGFSGELPTSLGKL----NSLKTF 157
            LE   L D  +S E+   L  L     SL+  
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 3/51 (5%)

Query: 120 IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT 170
                   +      +S           L  L  L+     +   L K+PT
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT 240

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 117 LGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176
           L  +PP L    +    +LS+N        +L     L   ++    +        L  L
Sbjct: 22  LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 106 LEDLRLSFTKF----LGKIPPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTF 157
           +E   L            +   L    ++++  LS N    E    L  ++     L+  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 158 DISSCNI 164
           + S    
Sbjct: 65  EFSDIFT 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.37

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.4e-22  Score=145.30  Aligned_cols=172  Identities=18%  Similarity=0.137  Sum_probs=138.9

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      ++++|++++|.+....+..|..+++|++|++++|.  +    ..++ .+..+++|++|++++|++.. .+..+..+++|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~--l----~~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~  103 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--L----TKLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALT  103 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--C----CEEE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccc--c----cccc-cccccccccccccccccccc-cccccccccccc
Confidence            57889999999887767788999999999999998  3    2333 24678999999999998875 466888999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +++++++.+   ....+. +..+.+++.+++++|.+....+..+..+++++.+++++|++++..+..+..+++|++|+++
T Consensus       104 ~L~l~~~~~---~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         104 VLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             EEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccc---ceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            999999843   332333 6788889999999999886666667788999999999999995555668889999999999


Q ss_pred             CCcccccCChhHHHhCC--CCCCCCCCC
Q 038090          161 SCNILGKIPTSLLIRLP--PSVALSSTP  186 (186)
Q Consensus       161 ~n~~~~~~p~~~~~~l~--~~~~l~~~~  186 (186)
                      +|+++ .+|++++. ++  ..+.|++||
T Consensus       181 ~N~L~-~lp~~~~~-~~~L~~L~L~~Np  206 (266)
T d1p9ag_         181 ENSLY-TIPKGFFG-SHLLPFAFLHGNP  206 (266)
T ss_dssp             SSCCC-CCCTTTTT-TCCCSEEECCSCC
T ss_pred             cCCCc-ccChhHCC-CCCCCEEEecCCC
Confidence            99998 99998873 44  357788887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=2.1e-22  Score=150.93  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC-
Q 038090          100 SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP-  178 (186)
Q Consensus       100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~-  178 (186)
                      +..+++++.+++.++.+.+. +..++.+++++.|++++|++++.+|.+++++++|++|++++|+++|++|.. + .+.. 
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~-~L~~L  293 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G-NLQRF  293 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T-TGGGS
T ss_pred             cccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-c-cCCCC
Confidence            34455566666666666533 345677889999999999999999999999999999999999999999863 2 3333 


Q ss_pred             -CCCCCCCC
Q 038090          179 -SVALSSTP  186 (186)
Q Consensus       179 -~~~l~~~~  186 (186)
                       ...+++|+
T Consensus       294 ~~l~l~~N~  302 (313)
T d1ogqa_         294 DVSAYANNK  302 (313)
T ss_dssp             CGGGTCSSS
T ss_pred             CHHHhCCCc
Confidence             34555553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-20  Score=137.40  Aligned_cols=180  Identities=18%  Similarity=0.159  Sum_probs=139.1

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccc---------------------cchhHHHHcCCccceEE
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQK---------------------SGLSNLAKKLTNLIEIY   60 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~~~~~~l~~L~~L~   60 (186)
                      ++++|++++|+++...+.+|.++++|+.|++++|.+.. +..                     ...+..+.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccc-cccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            56889999999988777789999999999999988411 000                     00144566778888888


Q ss_pred             eccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc
Q 038090           61 LIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG  139 (186)
Q Consensus        61 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~  139 (186)
                      +++|.+....+..+..+.+|+.+++++|.++   .-.+. +..+++|+.|++++|.+....+..+..+++|+++++++|+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~---~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQ---ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcccccccccccchhcccchhhhcccccc---ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            8888877666667777888888888888443   22233 6778889999999999886667788889999999999999


Q ss_pred             CCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090          140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP  186 (186)
Q Consensus       140 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~  186 (186)
                      +.+..|..|..+++|+++++++|.+. .++......++.+  ..+++||
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCC
Confidence            98666788899999999999999998 6776665567765  5666776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=5.1e-20  Score=137.82  Aligned_cols=173  Identities=20%  Similarity=0.249  Sum_probs=112.7

Q ss_pred             ccceecccccccCc--ChhhHHhhcccCeeeCCC-CCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCC
Q 038090            3 QRKINEQDFGVETS--NISRVARALQLGVLDLSY-NHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS   79 (186)
Q Consensus         3 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~   79 (186)
                      ++.|+++++++...  .++.+.++++|++|++++ |.  +   .+.+|..+.++.+|++|++++|.+.+..+..+..+..
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~--l---~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--L---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--E---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccc--c---ccccccccccccccchhhhccccccccccccccchhh
Confidence            45677777766542  356777777777777775 55  3   5567777777777777777777766555555555666


Q ss_pred             CCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCC---------------------------------------
Q 038090           80 LIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK---------------------------------------  119 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---------------------------------------  119 (186)
                      |+++++++|   .....+|. +..++.++.+++++|.+.+.                                       
T Consensus       127 L~~l~l~~N---~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~  203 (313)
T d1ogqa_         127 LVTLDFSYN---ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD  203 (313)
T ss_dssp             CCEEECCSS---EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred             hcccccccc---cccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666555   33334444 44455555555444443322                                       


Q ss_pred             ---------CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCC--CCCCC
Q 038090          120 ---------IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSV--ALSST  185 (186)
Q Consensus       120 ---------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~--~l~~~  185 (186)
                               .|..+..+++++.+++++|.+.+. +..++.+++|++|++++|+++|.+|.+++ .++.+.  .|+.|
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHh-CCCCCCEEECcCC
Confidence                     333344456677777777777744 44578889999999999999999999987 677764  44444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.3e-19  Score=130.62  Aligned_cols=153  Identities=21%  Similarity=0.159  Sum_probs=131.1

Q ss_pred             CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .+|++|++++|.++..  +.++.+++|+.|++++|.  +    ...+..+.++++|+.|+++++.+....+..+..+.++
T Consensus        55 ~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~--l----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ--L----QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (266)
T ss_dssp             TTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSC--C----SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             cccccccccccccccc--cccccccccccccccccc--c----cccccccccccccccccccccccceeecccccccccc
Confidence            3689999999998753  456789999999999999  3    3455567889999999999999887777888999999


Q ss_pred             CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090           81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI  159 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l  159 (186)
                      +++++++|.+..+   .+. +..+++++.+++++|++....+..+..+++|++|+|++|+++ .+|+++..+++|+.+++
T Consensus       127 ~~L~l~~n~l~~l---~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         127 QELYLKGNELKTL---PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             CEEECTTSCCCCC---CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             cccccccccccee---ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence            9999999954322   233 677889999999999999777778899999999999999999 89998989999999999


Q ss_pred             cCCccc
Q 038090          160 SSCNIL  165 (186)
Q Consensus       160 ~~n~~~  165 (186)
                      ++|++.
T Consensus       203 ~~Np~~  208 (266)
T d1p9ag_         203 HGNPWL  208 (266)
T ss_dssp             CSCCBC
T ss_pred             cCCCCC
Confidence            999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=9.2e-18  Score=117.83  Aligned_cols=158  Identities=23%  Similarity=0.346  Sum_probs=126.3

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +++.|+++++++...  +.+..+++|++|++++|.  +   . .+++ +.++++|++|++++|.+.. .+ .+..++.|+
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~--l---~-~~~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ--L---T-DITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C---C-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCcccccc--c---c-Cccc-ccCCccccccccccccccc-cc-ccccccccc
Confidence            578899999998753  568899999999999998  3   3 3333 7889999999999998764 33 588999999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      +++++++...    .++.+..+++|+.+++++|.+. .+ ..+..+++++.+++.+|.++ .++ .++.+++|++|++++
T Consensus       110 ~L~l~~~~~~----~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         110 GLTLFNNQIT----DIDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISS  181 (199)
T ss_dssp             EEECCSSCCC----CCGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCS
T ss_pred             cccccccccc----cccccchhhhhHHhhhhhhhhc-cc-cccccccccccccccccccc-CCc-cccCCCCCCEEECCC
Confidence            9999988432    2223678899999999999986 33 35888999999999999998 554 488999999999999


Q ss_pred             CcccccCChhHHHhCCCCCC
Q 038090          162 CNILGKIPTSLLIRLPPSVA  181 (186)
Q Consensus       162 n~~~~~~p~~~~~~l~~~~~  181 (186)
                      |+++ .++ .+. .++.+..
T Consensus       182 N~i~-~i~-~l~-~L~~L~~  198 (199)
T d2omxa2         182 NKVS-DIS-VLA-KLTNLES  198 (199)
T ss_dssp             SCCC-CCG-GGG-GCTTCSE
T ss_pred             CCCC-CCc-ccc-CCCCCCc
Confidence            9998 665 343 6666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.5e-18  Score=127.20  Aligned_cols=164  Identities=17%  Similarity=0.159  Sum_probs=107.1

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc----------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS----------   71 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------   71 (186)
                      ++++|++++|.++.....+|..+++|++|++++|.  +   ....+..|..+++|++|++++|+++....          
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~--~---~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~  106 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--I---SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR  106 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--C---CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcChhHhhcccccccccccccc--c---cccchhhhhCCCccCEecccCCccCcCccchhhhhhhhh
Confidence            57888999998887766678889999999999998  3   33345567888888888888775442111          


Q ss_pred             -------------------------------------cccCCCCCCCeEeecccccccc------------------ccC
Q 038090           72 -------------------------------------PTLTNLSSLIYLSISECSSQDL------------------FGY   96 (186)
Q Consensus        72 -------------------------------------~~~~~l~~L~~L~l~~~~l~~~------------------~~~   96 (186)
                                                           ..+..+++|+++++++|.+..+                  ...
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCC
Confidence                                                 1112223344444444433211                  111


Q ss_pred             CCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090           97 LPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL  172 (186)
Q Consensus        97 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~  172 (186)
                      .+. +..++.++.|++++|.+.+..+..+..+++|++|+|++|+++ .+|.++..+++|++|++++|+++ .++...
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~  261 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSND  261 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTS
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhh
Confidence            222 445555666666666666555666667778888888888877 67777778888888888888887 666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.7e-18  Score=124.24  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=124.2

Q ss_pred             cccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccc
Q 038090           12 GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQ   91 (186)
Q Consensus        12 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~   91 (186)
                      .+....+..++.+++|++|++++|.  +   ....+..+....+|+.+++.+|.+++..+..|..+++|++|++++|.+ 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~--~---~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-  165 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCG--L---QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-  165 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred             ccccccchhhcccccCCEEecCCcc--c---ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-
Confidence            3444446678899999999999999  4   344455677789999999999999987778899999999999999954 


Q ss_pred             ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccc
Q 038090           92 DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILG  166 (186)
Q Consensus        92 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~  166 (186)
                        ..-.+. +..+++|+.+++++|.+.+..|..|..+++|++|++++|.+.+..+..++.+++|+++++++|++..
T Consensus       166 --~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         166 --SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             --CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             --cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence              333334 7889999999999999987889999999999999999999996666778999999999999998863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.2e-17  Score=115.29  Aligned_cols=163  Identities=20%  Similarity=0.216  Sum_probs=123.7

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|+.|++.+|+++..  +.+..|++|+.|++++|.  +   .. +. .+.++++++.+++++|.++. . +.+.++++|+
T Consensus        42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~--i---~~-~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~  110 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--I---TD-LA-PLKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (227)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C---CC-CG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCce--e---ec-cc-cccccccccccccccccccc-c-cccccccccc
Confidence            578899999998754  568899999999999998  4   33 32 27889999999999998764 3 3577889999


Q ss_pred             eEeecccccccccc------------------CCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC
Q 038090           82 YLSISECSSQDLFG------------------YLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE  143 (186)
Q Consensus        82 ~L~l~~~~l~~~~~------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  143 (186)
                      +++++++.......                  ....+..+++++.|++++|.+.+.  ..+..+++|++|++++|+++ .
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~  187 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-D  187 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-C
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccC-C
Confidence            99998876541110                  111145667889999998887633  33788999999999999988 5


Q ss_pred             CchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCC
Q 038090          144 LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL  182 (186)
Q Consensus       144 ~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l  182 (186)
                      ++. ++.+++|++|++++|+++ .++. + ..++.+..|
T Consensus       188 l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l-~~l~~L~~L  222 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIV  222 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEE
T ss_pred             Chh-hcCCCCCCEEECcCCcCC-CCcc-c-ccCCCCCEE
Confidence            554 889999999999999998 7763 3 366666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.6e-17  Score=114.70  Aligned_cols=159  Identities=23%  Similarity=0.229  Sum_probs=127.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|+++++.+...  ..+..+++|++|++++|.  +    ..++ .+..+++|+.|++++|.++. ++ .+..+++|+
T Consensus        47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~--i----~~l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~  115 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK--L----TDIK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (210)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             CccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcc--c----cCcc-ccccCccccccccccccccc-cc-ccccccccc
Confidence            578899999988754  457899999999999998  3    3344 25789999999999999875 44 588899999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~  161 (186)
                      .+++++|...    .++.+..++.++.+++++|.+.+  +..+..+++|+++++++|.+. .++. ++.+++|++|++++
T Consensus       116 ~L~l~~~~~~----~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         116 SLSLEHNGIS----DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK  187 (210)
T ss_dssp             EEECTTSCCC----CCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred             cccccccccc----ccccccccccccccccccccccc--ccccccccccccccccccccc-cccc-ccCCCCCCEEECCC
Confidence            9999998432    23347788899999999998863  345678899999999999998 5554 88999999999999


Q ss_pred             CcccccCChhHHHhCCCCCCC
Q 038090          162 CNILGKIPTSLLIRLPPSVAL  182 (186)
Q Consensus       162 n~~~~~~p~~~~~~l~~~~~l  182 (186)
                      |+++ .+| .+. .++.+..|
T Consensus       188 N~i~-~l~-~l~-~l~~L~~L  205 (210)
T d1h6ta2         188 NHIS-DLR-ALA-GLKNLDVL  205 (210)
T ss_dssp             SCCC-BCG-GGT-TCTTCSEE
T ss_pred             CCCC-CCh-hhc-CCCCCCEE
Confidence            9998 776 343 66666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=3.2e-17  Score=114.40  Aligned_cols=157  Identities=16%  Similarity=0.141  Sum_probs=107.8

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCcccccccc-chhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKS-GLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +.++.++++++.+ |+.+.  +++++|+|++|.  +   .. ..+..|.++++|++|++++|.+....+..+..+++|++
T Consensus        11 ~~v~Cs~~~L~~i-P~~lp--~~l~~L~Ls~N~--i---~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNE--L---GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCC--C---CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEEeCCCcCcc-CCCCC--CCCCEEEeCCCC--C---cccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            4567777777654 33332  578888888888  3   33 22345678888888888888888777778888888888


Q ss_pred             EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEecc
Q 038090           83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDIS  160 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~  160 (186)
                      |++++|.+.   .-.+. +..+++|+.|++++|.+....+..|..+++|+++++++|.+.+.... ++.  ..++...+.
T Consensus        83 L~Ls~N~l~---~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~  157 (192)
T d1w8aa_          83 LQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLN  157 (192)
T ss_dssp             EECCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCS
T ss_pred             eeecccccc---ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhccc
Confidence            888888543   32334 77888888888888888866667788888888888888888743221 121  124444555


Q ss_pred             CCcccccCChhHH
Q 038090          161 SCNILGKIPTSLL  173 (186)
Q Consensus       161 ~n~~~~~~p~~~~  173 (186)
                      .+.++...|..+.
T Consensus       158 ~~~~~c~~p~~l~  170 (192)
T d1w8aa_         158 GGAARCGAPSKVR  170 (192)
T ss_dssp             GGGCBBCSSTTTT
T ss_pred             CCCeEeCCChhhc
Confidence            5666555565543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1e-15  Score=108.13  Aligned_cols=142  Identities=26%  Similarity=0.272  Sum_probs=116.3

Q ss_pred             CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090            1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL   80 (186)
Q Consensus         1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   80 (186)
                      .+|+.|++++|.++..  +.++.+++|+.|++++|.  +    ..++ .+..+++|+.|++.+|.+..  ...+..++.+
T Consensus        68 ~~L~~L~L~~n~i~~l--~~~~~l~~L~~L~l~~n~--i----~~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l  136 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENK--V----KDLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQL  136 (210)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC--C----CCGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTC
T ss_pred             CCCCEEeCCCccccCc--cccccCcccccccccccc--c----cccc-cccccccccccccccccccc--cccccccccc
Confidence            3689999999998754  457899999999999999  3    3444 47889999999999998764  3468889999


Q ss_pred             CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090           81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS  160 (186)
Q Consensus        81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~  160 (186)
                      +++++++|.+..    .+....+++|+.+++++|.+.+ ++ .+..+++|+.|++++|.++ .++ .+..+++|++|+++
T Consensus       137 ~~l~~~~n~l~~----~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         137 ESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccc----cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            999999995432    2226778899999999999974 43 3889999999999999998 666 58999999999986


Q ss_pred             C
Q 038090          161 S  161 (186)
Q Consensus       161 ~  161 (186)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.1e-16  Score=106.48  Aligned_cols=107  Identities=19%  Similarity=0.140  Sum_probs=49.9

Q ss_pred             hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CC
Q 038090           23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ  101 (186)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~  101 (186)
                      ++..+++||+++|.      ...++..+..+.+|+.|++++|.++. + +.+..+++|++|++++|.+..+   .+. +.
T Consensus        16 n~~~lr~L~L~~n~------I~~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l---~~~~~~   84 (162)
T d1a9na_          16 NAVRDRELDLRGYK------IPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRI---GEGLDQ   84 (162)
T ss_dssp             CTTSCEEEECTTSC------CCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEE---CSCHHH
T ss_pred             CcCcCcEEECCCCC------CCccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCC---Cccccc
Confidence            44455556666655      22233333445555555555555543 2 2345555555555555532211   111 23


Q ss_pred             CCCcccEEEccCCcCCCCCC--cccCCCCCCCEEEcCCCcCC
Q 038090          102 KGSLLEDLRLSFTKFLGKIP--PSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~n~~~  141 (186)
                      .+++++.|++++|.+.. ++  ..+..+++|+++++++|.+.
T Consensus        85 ~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          85 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            44455555555555442 22  23444455555555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=5.4e-16  Score=108.03  Aligned_cols=129  Identities=21%  Similarity=0.211  Sum_probs=106.8

Q ss_pred             cCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-ccccCCCCCCCeEeeccccccccccCCCC-CCCCC
Q 038090           27 LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGS  104 (186)
Q Consensus        27 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~  104 (186)
                      .+.++.+++++      ..+|..+  .+++++|++++|.+++.. +..|..+++|++|++++|.   +....+. +..++
T Consensus        10 ~~~v~Cs~~~L------~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~---i~~~~~~~~~~~~   78 (192)
T d1w8aa_          10 GTTVDCTGRGL------KEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---LTGIEPNAFEGAS   78 (192)
T ss_dssp             TTEEECTTSCC------SSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---CCCBCTTTTTTCT
T ss_pred             CCEEEEeCCCc------CccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc---ccccccccccccc
Confidence            46789999983      3455433  268999999999997644 5678999999999999994   4444455 88899


Q ss_pred             cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccc
Q 038090          105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILG  166 (186)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~  166 (186)
                      +|+.|++++|.+....+..|..+++|++|+|++|.+++..+..|..+++|+++++++|.+..
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99999999999997777889999999999999999995445668899999999999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.2e-15  Score=104.60  Aligned_cols=137  Identities=23%  Similarity=0.281  Sum_probs=112.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|++++|.++..  ..++++++|+.|++++|.  +    ..++ .+.++++|+.|+++++.....  ..+..+++|+
T Consensus        63 nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n~--~----~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~  131 (199)
T d2omxa2          63 NLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQ--I----ADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLN  131 (199)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC--C----CCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             CcCcCccccccccCc--ccccCCcccccccccccc--c----cccc-ccccccccccccccccccccc--cccchhhhhH
Confidence            688999999998754  348999999999999998  3    3343 378899999999999987642  4588899999


Q ss_pred             eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEE
Q 038090           82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTF  157 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l  157 (186)
                      ++++++|.+.    .++.+..+++++.|++.+|.+.+ ++ .++.+++|++|++++|+++ .++ .++++++|++|
T Consensus       132 ~L~l~~n~l~----~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         132 RLELSSNTIS----DISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCC----CCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             Hhhhhhhhhc----ccccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            9999999543    23347788999999999999874 33 4889999999999999998 565 48889999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.7e-15  Score=114.08  Aligned_cols=122  Identities=23%  Similarity=0.300  Sum_probs=79.4

Q ss_pred             HcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCC
Q 038090           51 KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNL  130 (186)
Q Consensus        51 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  130 (186)
                      ..+++|++|+++++.+.+. + .+..+..++.+.+..|.++    .++.+..+++++.+++++|.+.+. + .+..+++|
T Consensus       260 ~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~----~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L  331 (384)
T d2omza2         260 SGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLE----DISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKL  331 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCS----CCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTC
T ss_pred             cccccCCEeeccCcccCCC-C-ccccccccccccccccccc----cccccchhcccCeEECCCCCCCCC-c-ccccCCCC
Confidence            3344444444444443321 1 2334444444444444221    122266778899999999998754 3 37889999


Q ss_pred             CEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCC
Q 038090          131 EDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSST  185 (186)
Q Consensus       131 ~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~  185 (186)
                      +.|++++|.++ .++ .++.+++|++|++++|+++ .+++ + ..++.+  ..|++|
T Consensus       332 ~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~-~l~~-l-~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVS-DVS-SLANLTNINWLSAGHNQIS-DLTP-L-ANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEECCCE
T ss_pred             CEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCC-CChh-h-ccCCCCCEeeCCCC
Confidence            99999999998 555 5889999999999999998 5554 3 467765  455555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.4e-16  Score=111.47  Aligned_cols=174  Identities=20%  Similarity=0.124  Sum_probs=117.8

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccch-hHHHHcCCccceEEecc-ccCCCCcccccCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGL-SNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSS   79 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~   79 (186)
                      ++++|+++++.+......+|.++++|++|++++|.  +   ...+ +..|.+++.++++.+.. +.+....+..|..+++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~--~---~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--V---LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT--T---CCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhcccc--c---cceeecccccccccccccccccccccccccccccccccc
Confidence            57889999999887766778999999999999998  3   3322 33467788888888764 5555556677888999


Q ss_pred             CCeEeecccccccccc---------------------CCCC--CCCC-CcccEEEccCCcCCCCCCcccCCCCCCCEE-E
Q 038090           80 LIYLSISECSSQDLFG---------------------YLPK--SQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDR-Y  134 (186)
Q Consensus        80 L~~L~l~~~~l~~~~~---------------------~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-~  134 (186)
                      |++++++++.+.....                     .++.  +..+ ..++.+++.+|.+. .++.......++..+ .
T Consensus       105 L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         105 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             CCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEEC
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhcccc
Confidence            9999998886541110                     0110  1111 23445555555554 333333334454444 4


Q ss_pred             cCCCcCCCCCch-hhhccCCCCEEeccCCcccccCChhHHHhCCCCCCCC
Q 038090          135 LSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALS  183 (186)
Q Consensus       135 L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l~  183 (186)
                      +++|.++ .+|. .+.++++|++|++++|+++ .+|....+.++.+..++
T Consensus       184 l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         184 SDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS  231 (242)
T ss_dssp             TTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSS
T ss_pred             ccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCc
Confidence            5677777 6654 4788999999999999998 89887777777765543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.1e-14  Score=94.31  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=71.6

Q ss_pred             ceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 038090           57 IEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL  135 (186)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  135 (186)
                      |.|++++|+++. ++ .+..++.|++|++++|.++    .+|. +..+++|+.|++++|.+. .++ .+..+++|+++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~----~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC----cchhhhhhhhccccccccccccc-ccC-ccccccccCeEEC
Confidence            345566665552 22 3555666666666666332    2333 555666666666666665 333 3667777888888


Q ss_pred             CCCcCCCCCc--hhhhccCCCCEEeccCCcccc--cCChhHHHhCCCCCCC
Q 038090          136 SDNGFSGELP--TSLGKLNSLKTFDISSCNILG--KIPTSLLIRLPPSVAL  182 (186)
Q Consensus       136 ~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~--~~p~~~~~~l~~~~~l  182 (186)
                      ++|.+. .++  ..++.+++|+++++++|++++  ..+..+...+|.+..+
T Consensus        73 ~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            888777 333  456778888888888888862  2345666667776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.8e-16  Score=114.66  Aligned_cols=78  Identities=22%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             CCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCC-cCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC
Q 038090          101 QKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDN-GFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP  178 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~  178 (186)
                      ..+++|+.|++++|. +++.....+..+++|++|++++| .+++.....++++++|++|+++++ +++..-..+.+.+|.
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            456778888887754 55455666777788888888875 455444455677788888888776 544444555556665


Q ss_pred             C
Q 038090          179 S  179 (186)
Q Consensus       179 ~  179 (186)
                      +
T Consensus       251 L  251 (284)
T d2astb2         251 L  251 (284)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=103.48  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=104.5

Q ss_pred             HHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCC
Q 038090           50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTN  129 (186)
Q Consensus        50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  129 (186)
                      +.+..++++|++++|+++. ++..+..++.|++|++++|.++.+    +.+..+++|+.|++++|.+....+..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l----~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc----CCcccCcchhhhhcccccccCCCccccccccc
Confidence            4456789999999999986 466677899999999999976543    33678899999999999998544444567899


Q ss_pred             CCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCCCCC
Q 038090          130 LEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVALSST  185 (186)
Q Consensus       130 L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l~~~  185 (186)
                      |++|++++|.+. .++  ..+..+++|+++++++|+++ ..|.   .+...+|.+..|++.
T Consensus        89 L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccceecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence            999999999998 444  35788999999999999998 7774   455689999888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=7.7e-14  Score=105.91  Aligned_cols=79  Identities=19%  Similarity=0.330  Sum_probs=64.2

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI   81 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   81 (186)
                      +|++|+++++++...  +.+..+++|++|++++|.  +    ..+++ +.++++|++|++++|.+.+. + .++.+++|+
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~--l----~~l~~-l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~  113 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ--L----TDITP-LKNLTKLVDILMNNNQIADI-T-PLANLTNLT  113 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCc--C----CCCcc-ccCCcccccccccccccccc-c-ccccccccc
Confidence            688999999998753  568899999999999999  3    33443 88899999999999998854 3 478899999


Q ss_pred             eEeecccccc
Q 038090           82 YLSISECSSQ   91 (186)
Q Consensus        82 ~L~l~~~~l~   91 (186)
                      .++++++...
T Consensus       114 ~L~~~~~~~~  123 (384)
T d2omza2         114 GLTLFNNQIT  123 (384)
T ss_dssp             EEECCSSCCC
T ss_pred             cccccccccc
Confidence            9998877554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3e-14  Score=92.23  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             HHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCC-CcccCCCC
Q 038090           50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI-PPSLGNLT  128 (186)
Q Consensus        50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~  128 (186)
                      +..+.+|++|++++|.++. +|+.++.+++|++|++++|.++.    ++.+..+++|+.+++++|.+.+.. ...+..++
T Consensus        16 l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~----l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC----CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc----cCccccccccCeEECCCCccCCCCCchhhcCCC
Confidence            3444444444444444442 33344444455555555543221    122444455555555555554221 13455666


Q ss_pred             CCCEEEcCCCcCCC--CCch-hhhccCCCCEE
Q 038090          129 NLEDRYLSDNGFSG--ELPT-SLGKLNSLKTF  157 (186)
Q Consensus       129 ~L~~L~L~~n~~~~--~~~~-~~~~~~~L~~l  157 (186)
                      +|+++++++|.++.  ..+. ....+++|+.+
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77777777776652  1222 23445666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=7.8e-14  Score=103.30  Aligned_cols=144  Identities=18%  Similarity=0.171  Sum_probs=113.5

Q ss_pred             ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccC
Q 038090           17 NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGY   96 (186)
Q Consensus        17 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   96 (186)
                      ....+..+++|+.+++++|.  +    ..++..  .+++|++|++.+|......+..|.+++.+++|++++|.+   ...
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~--l----~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l---~~~  210 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTN--I----TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI---SAV  210 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSC--C----CSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC---CEE
T ss_pred             CccccccccccCccccccCC--c----cccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccc---ccc
Confidence            34567788889999999988  2    233322  357899999999988877778899999999999999954   333


Q ss_pred             CCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-------hhhccCCCCEEeccCCccc-cc
Q 038090           97 LPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-------SLGKLNSLKTFDISSCNIL-GK  167 (186)
Q Consensus        97 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------~~~~~~~L~~l~l~~n~~~-~~  167 (186)
                      .+. +..+++|+.|++++|.+. .+|.++..+++|++|++++|+++ .++.       ....+.+|+.+++++|++. ++
T Consensus       211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            344 788899999999999998 67889999999999999999998 4432       2345688999999999885 46


Q ss_pred             CChhHH
Q 038090          168 IPTSLL  173 (186)
Q Consensus       168 ~p~~~~  173 (186)
                      +++..+
T Consensus       289 ~~~~~f  294 (305)
T d1xkua_         289 IQPSTF  294 (305)
T ss_dssp             SCGGGG
T ss_pred             CCHhHh
Confidence            666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=9.7e-14  Score=98.72  Aligned_cols=143  Identities=22%  Similarity=0.270  Sum_probs=107.0

Q ss_pred             CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-----------
Q 038090            2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-----------   70 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------   70 (186)
                      +|++|++++|.+...  ..+..+++++.+++++|.  +    ..++ .+.++++|+.+.++++...+..           
T Consensus        64 ~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~--~----~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          64 NLIGLELKDNQITDL--APLKNLTKITELELSGNP--L----KNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCC--C----SCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             CCcEeecCCceeecc--cccccccccccccccccc--c----cccc-cccccccccccccccccccccchhccccchhhh
Confidence            678899999887653  347888999999999888  2    2232 3567788888888777544211           


Q ss_pred             ---------ccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090           71 ---------SPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        71 ---------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                               ...+..+++|+++++++|.+..    .+.++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             hchhhhhchhhhhcccccccccccccccccc----chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC
Confidence                     1234556778889988884322    2237788999999999999874 44 3788999999999999998


Q ss_pred             CCCchhhhccCCCCEEeccC
Q 038090          142 GELPTSLGKLNSLKTFDISS  161 (186)
Q Consensus       142 ~~~~~~~~~~~~L~~l~l~~  161 (186)
                       .++. +..+++|+++++++
T Consensus       209 -~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         209 -DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -BCGG-GTTCTTCCEEEEEE
T ss_pred             -CCcc-cccCCCCCEEEeeC
Confidence             6664 88999999999873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=107.31  Aligned_cols=173  Identities=20%  Similarity=0.227  Sum_probs=122.7

Q ss_pred             CccceecccccccCcChh-hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCC-cccccCCCC
Q 038090            2 SQRKINEQDFGVETSNIS-RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSA-VSPTLTNLS   78 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~   78 (186)
                      +|++|++++|.+...... .+..|++|+.|++++|.  +   ....+..+.++++|++|++++|. ++.. ....+..++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~--l---~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--L---SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--C---CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccC--C---CcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            578899999887654433 35689999999999998  5   66677778889999999999974 3321 122345689


Q ss_pred             CCCeEeecccccccccc-CCCC-C-CCCCcccEEEccCCc--CCCC-CCcccCCCCCCCEEEcCCCc-CCCCCchhhhcc
Q 038090           79 SLIYLSISECSSQDLFG-YLPK-S-QKGSLLEDLRLSFTK--FLGK-IPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKL  151 (186)
Q Consensus        79 ~L~~L~l~~~~l~~~~~-~~~~-~-~~~~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~  151 (186)
                      +|++|++++|.  .+.. .+.. + ...++|+.|+++++.  +.+. +......+++|++|++++|. +++.....+..+
T Consensus       122 ~L~~L~ls~c~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         122 RLDELNLSWCF--DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             TCCEEECCCCT--TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             hcccccccccc--ccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            99999999973  1111 1111 2 234679999998753  3322 22233468999999999874 665666778899


Q ss_pred             CCCCEEeccCC-cccccCChhHHHhCCCCCCC
Q 038090          152 NSLKTFDISSC-NILGKIPTSLLIRLPPSVAL  182 (186)
Q Consensus       152 ~~L~~l~l~~n-~~~~~~p~~~~~~l~~~~~l  182 (186)
                      ++|++|++++| .+++.....++ .+|.+..|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L  230 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELG-EIPTLKTL  230 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGG-GCTTCCEE
T ss_pred             CcCCEEECCCCCCCChHHHHHHh-cCCCCCEE
Confidence            99999999996 78766666665 56776544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=3.3e-15  Score=104.51  Aligned_cols=134  Identities=19%  Similarity=0.312  Sum_probs=87.2

Q ss_pred             cchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCc
Q 038090           44 SGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPP  122 (186)
Q Consensus        44 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~  122 (186)
                      ..++..+..+.+|++|++++|.++. ++ .+..+++|++|++++|.+.    .++. ...+++|+.|++++|.+. .+ .
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~----~i~~~~~~~~~L~~L~l~~N~i~-~l-~  109 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----KIENLDAVADTLEELWISYNQIA-SL-S  109 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC----SCSSHHHHHHHCCEEECSEEECC-CH-H
T ss_pred             hhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc----ccccccccccccccccccccccc-cc-c
Confidence            4456667777778888887777764 33 4667777888888777443    2333 334456777888777776 33 2


Q ss_pred             ccCCCCCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh---------hHHHhCCCCCCCCCCC
Q 038090          123 SLGNLTNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT---------SLLIRLPPSVALSSTP  186 (186)
Q Consensus       123 ~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~---------~~~~~l~~~~~l~~~~  186 (186)
                      .+..+++|++|++++|.++ .++  ..+..+++|++|++++|++....+.         .+...+|++..|++.|
T Consensus       110 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~  183 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGG
T ss_pred             cccccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCcc
Confidence            3566777888888888777 443  3467778888888888877632222         1244677777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.39  E-value=5.2e-15  Score=103.52  Aligned_cols=134  Identities=22%  Similarity=0.124  Sum_probs=103.6

Q ss_pred             ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccC
Q 038090           17 NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGY   96 (186)
Q Consensus        17 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   96 (186)
                      ....+..+++|+.|++++|.  +    ..++ .+.++++|+.|++++|.+.. ++..+..+++|++|++++|.++.+   
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~--I----~~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l---  108 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNN--I----EKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL---  108 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEE--E----SCCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH---
T ss_pred             hhhHHhcccccceeECcccC--C----CCcc-cccCCccccChhhccccccc-cccccccccccccccccccccccc---
Confidence            35678999999999999999  3    3443 47889999999999999874 455555567899999999965432   


Q ss_pred             CCCCCCCCcccEEEccCCcCCCCCC--cccCCCCCCCEEEcCCCcCCCCCch----------hhhccCCCCEEeccCCcc
Q 038090           97 LPKSQKGSLLEDLRLSFTKFLGKIP--PSLGNLTNLEDRYLSDNGFSGELPT----------SLGKLNSLKTFDISSCNI  164 (186)
Q Consensus        97 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~----------~~~~~~~L~~l~l~~n~~  164 (186)
                       +.+..+++|+.|++++|.+. .++  ..+..+++|+.|++++|.+....+.          .+..+++|+.||  +..+
T Consensus       109 -~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I  184 (198)
T d1m9la_         109 -SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             -HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGG
T ss_pred             -ccccccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccC
Confidence             23677889999999999987 443  4688999999999999987632211          156789999998  4444


Q ss_pred             c
Q 038090          165 L  165 (186)
Q Consensus       165 ~  165 (186)
                      +
T Consensus       185 ~  185 (198)
T d1m9la_         185 D  185 (198)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-11  Score=82.45  Aligned_cols=111  Identities=18%  Similarity=0.111  Sum_probs=76.9

Q ss_pred             HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccCCCCCCCeEeeccccccccccCCCC-
Q 038090           22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-   99 (186)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-   99 (186)
                      +.+...+.++.+++.      ....|..+.++++|++|++.+++ ++...+..|..+++|++|++++|.++.+   -+. 
T Consensus         5 C~c~~~~~l~c~~~~------~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i---~~~~   75 (156)
T d2ifga3           5 CCPHGSSGLRCTRDG------ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV---APDA   75 (156)
T ss_dssp             SCCSSSSCEECCSSC------CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE---CTTG
T ss_pred             CCcCCCCeEEecCCC------CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc---cccc
Confidence            344556677888777      34456667777888888887654 6655566788888888888888854332   233 


Q ss_pred             CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090          100 SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG  142 (186)
Q Consensus       100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  142 (186)
                      +..+++|+.|++++|.+. .+|.......+|++|++++|.+..
T Consensus        76 f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             GGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccccccccceeccCCCCc-ccChhhhccccccccccCCCcccC
Confidence            677788888888888887 455444444568888888887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.5e-12  Score=90.08  Aligned_cols=163  Identities=17%  Similarity=0.123  Sum_probs=105.6

Q ss_pred             cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCc-ccccCCCCCCC
Q 038090            4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAV-SPTLTNLSSLI   81 (186)
Q Consensus         4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~   81 (186)
                      +.++.++.++..+ |+.+  .+++++|++++|.  +    ..++ ..|.++++|++|++++|.+.... +..|..++.++
T Consensus        11 ~~i~c~~~~l~~i-P~~l--~~~l~~L~Ls~n~--i----~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTK--L----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             SEEEEESCSCSSC-CSCS--CSCCSEEEEESCC--C----CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             CEEEEeCCCCCCc-CCCC--CCCCCEEECcCCc--C----CccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            4566676666543 3333  2589999999999  3    3444 35789999999999999887644 45788999999


Q ss_pred             eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCc-ccCC------------------------C-CCCCEEE
Q 038090           82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPP-SLGN------------------------L-TNLEDRY  134 (186)
Q Consensus        82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~------------------------l-~~L~~L~  134 (186)
                      ++.+..+.  ......+. +..+++|+.+++.++.+....+. .+..                        + ..++.++
T Consensus        82 ~l~~~~~n--~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          82 EIRIEKAN--NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             EEEEECCT--TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccc--cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            99987642  23333344 78889999999999877532111 1111                        1 2445566


Q ss_pred             cCCCcCCCCCchhhhccCCCCEE-eccCCcccccCChhHHHhCCCC
Q 038090          135 LSDNGFSGELPTSLGKLNSLKTF-DISSCNILGKIPTSLLIRLPPS  179 (186)
Q Consensus       135 L~~n~~~~~~~~~~~~~~~L~~l-~l~~n~~~~~~p~~~~~~l~~~  179 (186)
                      +.+|+++ .++.......++..+ ++.+|+++ ++|...+..++.+
T Consensus       160 l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L  203 (242)
T d1xwdc1         160 LNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGP  203 (242)
T ss_dssp             CCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCC
T ss_pred             ccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCC
Confidence            6666666 444433344444444 45666776 7777766666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.25  E-value=1.2e-10  Score=86.73  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090          128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT  170 (186)
Q Consensus       128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~  170 (186)
                      ++|++|++++|+++ .+|..   +++|+.|++++|+++ ++|.
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~  321 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE  321 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc
Confidence            46777777777776 55542   456666677766665 5654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=82.86  Aligned_cols=104  Identities=15%  Similarity=0.027  Sum_probs=62.6

Q ss_pred             cceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC-C-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090           56 LIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR  133 (186)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  133 (186)
                      ...++.+++.+.. .|..+..+++|++|++.++.   ....++ . +..+++|+.|++++|.+....+..|..+++|++|
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~---~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCc---cccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            3445555555542 45556666777777775542   112222 2 5666677777777777765555666677777777


Q ss_pred             EcCCCcCCCCCchhhhccCCCCEEeccCCcc
Q 038090          134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~  164 (186)
                      +|++|+++ .++.......+|++|++++|++
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             eccCCCCc-ccChhhhccccccccccCCCcc
Confidence            77777776 5555444444677777777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=6.3e-12  Score=94.41  Aligned_cols=163  Identities=17%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             CccceecccccccCcChhhH----HhhcccCeeeCCCCCccccccc-cchhH---------HHHcCCccceEEeccccCC
Q 038090            2 SQRKINEQDFGVETSNISRV----ARALQLGVLDLSYNHFAFKLQK-SGLSN---------LAKKLTNLIEIYLIDVDTS   67 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~-~~~~~---------~~~~l~~L~~L~l~~~~~~   67 (186)
                      +|+.|++++|.+.......+    ..+++|+.|++++|.+..  .. ..+..         .....+.|+.+.++++.+.
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             Ccccccccccccccccccchhhhhcccccchheecccccccc--cccccccccccccccccccccCcccceeeccccccc
Confidence            45666777666654433333    345667777777666210  00 00000         0123455666666665544


Q ss_pred             CCc----ccccCCCCCCCeEeecccccccc--ccCCCC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcC
Q 038090           68 SAV----SPTLTNLSSLIYLSISECSSQDL--FGYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLS  136 (186)
Q Consensus        68 ~~~----~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~  136 (186)
                      ...    ...+.....|+++++++|.+...  ...+.. +..+++|+.|++++|.+...    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            221    22234456777777777754321  011222 55667777788877776432    23445566777888888


Q ss_pred             CCcCCCCCch----hhhc--cCCCCEEeccCCcccc
Q 038090          137 DNGFSGELPT----SLGK--LNSLKTFDISSCNILG  166 (186)
Q Consensus       137 ~n~~~~~~~~----~~~~--~~~L~~l~l~~n~~~~  166 (186)
                      +|.+.+....    .+..  .+.|++|++++|++..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            8777643222    2222  3467778888777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=4.5e-12  Score=95.24  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             CCCCcccEEEccCCcCCCC-----CCcccCCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEeccCCcccccCChh
Q 038090          101 QKGSLLEDLRLSFTKFLGK-----IPPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDISSCNILGKIPTS  171 (186)
Q Consensus       101 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~p~~  171 (186)
                      ...+.++.+++++|.+...     +...+..+++|++|++++|.+...    +...+..+++|++|++++|.+.+.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3456788888888877532     234456678889999998887632    3344667888999999999887655555


Q ss_pred             HHH
Q 038090          172 LLI  174 (186)
Q Consensus       172 ~~~  174 (186)
                      +++
T Consensus       263 l~~  265 (344)
T d2ca6a1         263 VVD  265 (344)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.6e-12  Score=97.60  Aligned_cols=85  Identities=18%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             CccceecccccccCcChh----hHHhhcccCeeeCCCCCccccccccc-hhHHHHc----CCccceEEeccccCCCC---
Q 038090            2 SQRKINEQDFGVETSNIS----RVARALQLGVLDLSYNHFAFKLQKSG-LSNLAKK----LTNLIEIYLIDVDTSSA---   69 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~----l~~L~~L~l~~~~~~~~---   69 (186)
                      ++++|++.+|+++.....    ++..+++|++||+++|.  +   ... +......    ..+|++|++++|.++..   
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~--i---~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--L---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--C---HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc--C---ChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            578889999988754433    34578899999999998  3   221 2111121    25799999999987643   


Q ss_pred             -cccccCCCCCCCeEeecccccc
Q 038090           70 -VSPTLTNLSSLIYLSISECSSQ   91 (186)
Q Consensus        70 -~~~~~~~l~~L~~L~l~~~~l~   91 (186)
                       ++..+..+++|++|++++|.+.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccch
Confidence             3456778899999999998765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.8e-11  Score=90.28  Aligned_cols=176  Identities=17%  Similarity=0.111  Sum_probs=95.7

Q ss_pred             CccceecccccccCcC----hhhHHhhcccCeeeCCCCCccccccccc----hhHHHH-cCCccceEEeccccCCCCccc
Q 038090            2 SQRKINEQDFGVETSN----ISRVARALQLGVLDLSYNHFAFKLQKSG----LSNLAK-KLTNLIEIYLIDVDTSSAVSP   72 (186)
Q Consensus         2 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~-~l~~L~~L~l~~~~~~~~~~~   72 (186)
                      +++.+++++|.+....    ...+...+.++.+++++|+  +   ...    +...+. ....|+.++++++.+......
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~--i---~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~  330 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--L---GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  330 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC--C---HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--c---cccccchhhccccccccccccccccccchhhhhhh
Confidence            3556677766654322    2233456777777777777  3   211    111121 235677777777766543222


Q ss_pred             ----ccCCCCCCCeEeecccccccc-ccCCCC-C-CCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCC
Q 038090           73 ----TLTNLSSLIYLSISECSSQDL-FGYLPK-S-QKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFS  141 (186)
Q Consensus        73 ----~~~~l~~L~~L~l~~~~l~~~-~~~~~~-~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~  141 (186)
                          .+....+|++|++++|.+... ...+++ + .....|+.|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence                233445778888877744210 011222 2 2345677788887777532    2334455677888888887776


Q ss_pred             CCCchh----hh-ccCCCCEEeccCCcccccCCh---hHHHhCCCCCCC
Q 038090          142 GELPTS----LG-KLNSLKTFDISSCNILGKIPT---SLLIRLPPSVAL  182 (186)
Q Consensus       142 ~~~~~~----~~-~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l  182 (186)
                      ......    +. ....|+.+++.+|.+..+...   ++.+..|++..|
T Consensus       411 ~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            433222    22 223577888877777644333   334456665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=2e-08  Score=74.32  Aligned_cols=136  Identities=19%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090            3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY   82 (186)
Q Consensus         3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   82 (186)
                      +++|++++++++.. |+   -.++|+.|++++|.  +    ..+|..   +.+|+.|++.+|.++. +++.   .+.|++
T Consensus        40 l~~LdLs~~~L~~l-p~---~~~~L~~L~Ls~N~--l----~~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~  102 (353)
T d1jl5a_          40 AHELELNNLGLSSL-PE---LPPHLESLVASCNS--L----TELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEY  102 (353)
T ss_dssp             CSEEECTTSCCSCC-CS---CCTTCSEEECCSSC--C----SSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCE
T ss_pred             CCEEEeCCCCCCCC-CC---CCCCCCEEECCCCC--C----cccccc---hhhhhhhhhhhcccch-hhhh---cccccc
Confidence            44555555554432 22   13455555555555  2    233321   2355555555554442 1110   123555


Q ss_pred             EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090           83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC  162 (186)
Q Consensus        83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n  162 (186)
                      |++++|.+.    .+|.++.+++|+.+++.++.+. ..+..   ...+..+.+..+...  ....++.++.++.+++.+|
T Consensus       103 L~L~~n~l~----~lp~~~~l~~L~~L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         103 LGVSNNQLE----KLPELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             EECCSSCCS----SCCCCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSS
T ss_pred             ccccccccc----cccchhhhccceeecccccccc-ccccc---cccccchhhcccccc--ccccccccccceecccccc
Confidence            555555322    2233444555555555555443 11111   122333333332222  1122445666777777666


Q ss_pred             ccc
Q 038090          163 NIL  165 (186)
Q Consensus       163 ~~~  165 (186)
                      ...
T Consensus       173 ~~~  175 (353)
T d1jl5a_         173 SLK  175 (353)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3e-07  Score=61.19  Aligned_cols=88  Identities=20%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccC---
Q 038090           20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGY---   96 (186)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---   96 (186)
                      ....+++|++|++++|.++-   ...++..+..+++|+.|++++|.++...+-.+....+|+++++++|.+......   
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~---l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYR---LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCC---CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHhCCCCCEeeCCCccccC---CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            33579999999999999321   234556678899999999999998864332344556799999999965422111   


Q ss_pred             -CCC-CCCCCcccEEE
Q 038090           97 -LPK-SQKGSLLEDLR  110 (186)
Q Consensus        97 -~~~-~~~~~~L~~L~  110 (186)
                       ... +..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence             011 45677888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.5e-08  Score=64.26  Aligned_cols=83  Identities=17%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             CCCcccEEEccCCcCCCC--CCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEeccCCcccccCCh------hH
Q 038090          102 KGSLLEDLRLSFTKFLGK--IPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPT------SL  172 (186)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~------~~  172 (186)
                      .+++|+.|++++|.++..  ++..+..+++|+.|++++|.++ .+++ ......+|+.+++++|+++.....      .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            445566666666666532  1233445667777777777776 4433 222344567777777777633221      33


Q ss_pred             HHhCCCCCCCCCC
Q 038090          173 LIRLPPSVALSST  185 (186)
Q Consensus       173 ~~~l~~~~~l~~~  185 (186)
                      .+.+|.+..|+++
T Consensus       142 ~~~~P~L~~LDg~  154 (162)
T d1koha1         142 RERFPKLLRLDGH  154 (162)
T ss_dssp             HTTSTTCCEETTE
T ss_pred             HHHCCCCCEECcC
Confidence            4456777666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=1e-06  Score=58.87  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=59.9

Q ss_pred             hhcccCeeeCCCCC-ccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCC
Q 038090           23 RALQLGVLDLSYNH-FAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQ  101 (186)
Q Consensus        23 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~  101 (186)
                      ..+.|++|+|+++. +.. .....+...+....+|++|++++|.+.......++.+                      +.
T Consensus        13 n~~~L~~L~L~~~~~i~~-~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~----------------------L~   69 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL----------------------IE   69 (167)
T ss_dssp             TCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHH----------------------HH
T ss_pred             CCCCCcEEEeCCCCCCCH-HHHHHHHHHHhhCCccceeeccccccchhHHHHHhhh----------------------hh
Confidence            34677777777643 110 0001123334445667777776665542111111100                      22


Q ss_pred             CCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCC-------CchhhhccCCCCEEeccCCcc
Q 038090          102 KGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGE-------LPTSLGKLNSLKTFDISSCNI  164 (186)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~l~l~~n~~  164 (186)
                      ..+.++.|++++|.+.+.    +...+...++|++|++++|.....       +...+...++|+.++++.+..
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            333445555555544322    223345556777777777755421       334456678888888877644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=2.3e-06  Score=57.02  Aligned_cols=88  Identities=10%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             CCccceecccc-cccCcChh----hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc----c
Q 038090            1 HSQRKINEQDF-GVETSNIS----RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV----S   71 (186)
Q Consensus         1 ~~L~~L~l~~~-~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~   71 (186)
                      .+|+.|+++++ .+......    ++...+.|+.|++++|.+.- .....+...+...+.|++|++++|.+....    .
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~-~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-SEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-HHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch-hHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            36899999975 46543333    34567889999999999320 011345566777789999999999877432    2


Q ss_pred             cccCCCCCCCeEeecccc
Q 038090           72 PTLTNLSSLIYLSISECS   89 (186)
Q Consensus        72 ~~~~~l~~L~~L~l~~~~   89 (186)
                      ..+..-++|++|++++|.
T Consensus        94 ~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHHhCCcCCEEECCCCc
Confidence            345555667777777663

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.38  E-value=2.9e-05  Score=51.33  Aligned_cols=117  Identities=15%  Similarity=0.039  Sum_probs=59.7

Q ss_pred             hhcccCeeeCCCC-CccccccccchhHHHHcCCccceEEeccccCCCCc----ccccCCCCCCCeEeecccccccccc-C
Q 038090           23 RALQLGVLDLSYN-HFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV----SPTLTNLSSLIYLSISECSSQDLFG-Y   96 (186)
Q Consensus        23 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~-~   96 (186)
                      ..+.|++|+++++ .+.. .....+...+...++|++|++++|.+....    ...+....+++.++++++.+..... .
T Consensus        15 ~~~~L~~L~L~~~~~i~~-~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCH-HHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567777777663 3210 001123334445666777777777655321    2233445667777777664431110 1


Q ss_pred             CCC-CCCCCcccEEEcc--CCcCCCC----CCcccCCCCCCCEEEcCCCcC
Q 038090           97 LPK-SQKGSLLEDLRLS--FTKFLGK----IPPSLGNLTNLEDRYLSDNGF  140 (186)
Q Consensus        97 ~~~-~~~~~~L~~L~l~--~~~~~~~----~~~~~~~l~~L~~L~L~~n~~  140 (186)
                      +.. +...++++.+++.  +|.+.+.    +...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            112 4555666665553  3444322    334445667888888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.37  E-value=2.1e-05  Score=52.00  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             hhHHHHcCCccceEEeccc-cCCCC----cccccCCCCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCC
Q 038090           46 LSNLAKKLTNLIEIYLIDV-DTSSA----VSPTLTNLSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLG  118 (186)
Q Consensus        46 ~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~  118 (186)
                      +.......++|++|+++++ .++..    +...+...+.|++|++++|.++.... .+.. +...+.++.+++.++.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            3334456799999999974 45422    23456678899999999996653211 1223 5567889999999988764


Q ss_pred             C----CCcccCCCCCCCEEEcC--CCcCCC----CCchhhhccCCCCEEeccCCccc
Q 038090          119 K----IPPSLGNLTNLEDRYLS--DNGFSG----ELPTSLGKLNSLKTFDISSCNIL  165 (186)
Q Consensus       119 ~----~~~~~~~l~~L~~L~L~--~n~~~~----~~~~~~~~~~~L~~l~l~~n~~~  165 (186)
                      .    +...+...++|+.++++  .|.+..    .+...+..+++|+.|+++.+...
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            3    33556677889987775  455543    23445678899999999887653