Citrus Sinensis ID: 038130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKHVREK
Secondary Structure (PSIPRED)
cccccccccccccccEEEccccccccccHHHHHHHHHHccccEEEEccccccccccHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHccccccccccccEEEEEEcEEEEcccEEEEccccccccccEEEEccccccccccccccccHHHHHHHHcEEEEEEccHHHcccccHHHHHHcHHcHHHHccccccccccccccccccccEEEccccccEEccccccccccccEEEcccccccEEccccccccccccEEEEEccccccccccccccHHHHHHHHHccccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHccccccEEcccccccccccccccccccEEEcccccccccccccccccEEcccccccccHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHcccccccccccEcHHHHHHHHHHHHHcccccccccccEEEccHHHHHHHHcccccEEEEccccHHHHHcHHHHcccccccEEEcccccccccccccccHHHcEEEEccccccEEccccccccHcccEEcccccccHccccccHHHHHcHHEEccccccHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHccEEEccccccccccccccccccccccccccccEEEcccccccEEcccccccccccEccHHHHHHHcccEEEccccccccccccccccccEEccccccccEEcccccccEEEEcccHccccHHHHHHHHHHccccEEEcccccccccccc
Coil and Loop (DISEMBL)
masssslhfqhnrndvflsfkgedtrdnFTSHLYSALSQKCIETFIgndlkrgdeISQSLGDAVEVSSIYIIFsesdassswCLDELLKIVECRTNYGQIVVAVCYrvepshvrkqigSFEDSFSKLEErfpdkmqtgkkhiCLDVAYFLKEERSDMVLSFLDACGffagiglpVLVNRCLITVSHSNTITMHDSLGDMEREIVQKEsinypgecsplwhhkdIYEVLIVNTLVILNLSeyvslnslpAEILHLEFLKKLNLlgcsklkrlpefsssgkieeiwldgtaieelpssigCLSRLLYLYLSDckrlkslpsslsqLKSLKLlnlhgcsnlqrlpddfgnleasnstLYAKGTaakrevpssivgsnnnlyelsldrswggdkqmglsspitlpldglhttLTSLYLNycgilelpdsleknnferipesIIQLSRLVVLNLNYCErlqslpklpfnlqgIFAHHCtalssisyksstqlfdlsdnfkldrnaVRIIVEDALQDIQLMAAAHWKHVREK
Flexible Loop (DISEMBL)
masssslhfqhnrNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFsesdasssWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERfpdkmqtgkkHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKrlpefsssgkIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGtaakrevpssivgsnnnlYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKHVREK
Low Complexity Region (SEG)
MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEvlivntlvilnlSEYVSLNSLPAEIlhleflkklnllGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCkrlkslpsslsqlkslkllnlHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKHVREK
Disordered region (IsUnstruct)
**************DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIG*******************GKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGN**************************NNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKH****
Disordered Region (DISOPRED)
*********QHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK*MGL**PITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAA*********
Disordered Region (DISEMBL)
*********QHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAA********
Disordered Region (DISPRO)
*********QHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKHVREK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.260	0.119	0.464	2e-25
O82500	1095	Putative disease resistan	no	no	0.241	0.115	0.477	2e-23
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.260	0.105	0.416	5e-20
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.205	0.056	0.459	4e-16
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.258	0.384	0.338	1e-14
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.218	0.279	0.367	1e-11
Q9FL92	1372	Probable WRKY transcripti	no	no	0.737	0.282	0.252	3e-11
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.243	0.326	0.372	7e-11
Q9FH83	1288	Probable WRKY transcripti	no	no	0.180	0.073	0.327	2e-10
Q9SYC9	571	Vesicle-associated protei	no	no	0.241	0.222	0.3	1e-09

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 3/140 (2%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSLGDAVEVSSIYII- 72
           DVFLSF+GEDTR  FTSHLY  L+ K I+TF  +  L+ G  I   L  A+E S   I+ 
Sbjct: 13  DVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVV 72

Query: 73  FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFP 132
           FSE+ A+S WCL+EL+KI+EC+T + Q V+ + Y V+PSHVR Q  SF  +F + E ++ 
Sbjct: 73  FSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYK 132

Query: 133 DKMQTGKK-HICLDVAYFLK 151
           D ++  ++  I L+ A  LK
Sbjct: 133 DDVEGIQRWRIALNEAANLK 152

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 83/136 (61%), Gaps = 9/136 (6%)

Query: 1   MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSL 60
           MASSSS  +   R DVF SF+GED R+NF SHL      K I TF  + +KR   I   L
Sbjct: 1   MASSSSNSW---RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 61  GDAVEVSSIYII-FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
             A+  S I ++ FSE+ ASSSWCLDEL++I++C+   G  V+ V Y+V+PS +RKQ G 
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGK 117

Query: 120 FEDSF-----SKLEER 130
           F  SF      K EER
Sbjct: 118 FGMSFLETCCGKTEER 133

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 99.8 bits (247), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 7/144 (4%)

Query: 1   MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSL 60
           +ASSS       R DVF SF+GED RD+F SHL   L  K I TFI ++++R   I   L
Sbjct: 3   IASSSG----SRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPEL 57

Query: 61  GDAVEVSSIYI-IFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
             A++ S I I IFS++ ASS+WCL+EL++I +C TN  Q+V+ + + V+ S V+KQ G 
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGE 117

Query: 120 FEDSFSKL-EERFPDKMQTGKKHI 142
           F   F +  + +  D+ Q+ K+ +
Sbjct: 118 FGKVFEETCKAKSEDEKQSWKQAL 141

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 3/111 (2%)

Query: 233  LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
            LV LNL     L ++P+ ++ LE L+ LNL GCSKL   PE S +  ++E+++ GT I+E
Sbjct: 1307 LVFLNLKGCSKLENIPS-MVDLESLEVLNLSGCSKLGNFPEISPN--VKELYMGGTMIQE 1363

Query: 293  LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD 343
            +PSSI  L  L  L L + + LK+LP+S+ +LK L+ LNL GC +L+R PD
Sbjct: 1364 IPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPD 1414

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 3/139 (2%)

Query: 1   MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSL 60
           MA+SSS+        VF++F+G+D R+ F S L  A+ +  I  FI  D   G ++    
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLF 60

Query: 61  GDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSF 120
               E     +IFS+   SS WCLDEL +I +C    G   + + Y++ PS V +  G F
Sbjct: 61  VRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGF 120

Query: 121 EDSFSKLEERF---PDKMQ 136
            D+F  L+E++   P++ Q
Sbjct: 121 GDTFRVLKEKYKNDPERTQ 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSI-YIIFS 74
           VF++F+G+D R  F S L  AL ++ I  FI    +RG  +  SL D +  S I  +IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 75  ESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF 131
           E    S WC+DEL+KI E       I++ + YR++   V+   G F D+F  L +++
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKY 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 213/527 (40%), Gaps = 139/527 (26%)

Query: 114 RKQIGSFEDSFSKLEERFP-----------DKMQTGKKHICLDVAYFLKEERSDMVLSFL 162
           +K+    E +F KL+E  P           D +   +K+I LD+A F + E  D V+  L
Sbjct: 347 KKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLL 406

Query: 163 DACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKE--------------S 208
           + CGFF  +G+ VLV + L+T+S  N + MH+ + D+ R+I+ +E              S
Sbjct: 407 EGCGFFPHVGIDVLVEKSLVTISE-NRVRMHNLIQDVGRQIINRETRQTKRRSRLWEPCS 465

Query: 209 INY----------------------PGECSPLWHHK-----DIYEVLIVNTLVILNLSEY 241
           I Y                      P E   ++        DI  V   N   +LNL  +
Sbjct: 466 IKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLSFDIKHVAFDN---MLNLRLF 522

Query: 242 VSLNSLPAEILHL-EFLKK--------LNLLGCSK--LKRLPEFSSSGKIEEIWLDGTAI 290
              +S P E+ H+  FLK         L LL      L+ LP+      + EI +  + +
Sbjct: 523 KIYSSNP-EVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQL 581

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-------- 342
           ++L      L  L  + L   ++L  +   L + ++L++++L GC+ LQ  P        
Sbjct: 582 KKLWGGTKDLEMLKTIRLCHSQQLVDI-DDLLKAQNLEVVDLQGCTRLQSFPATGQLLHL 640

Query: 343 -----------DDFGNLEASNSTLYAKGTAAKREVPSSIVGSN-----NNLYELSLDRSW 386
                        F  +  +  TL  +GT    E+P SIV  N     N L E+      
Sbjct: 641 RVVNLSGCTEIKSFPEIPPNIETLNLQGTGII-ELPLSIVKPNYRELLNLLAEIP----- 694

Query: 387 GGDKQMGLSSPITLPLDGLH--TTLTSLYLNYCGILELPDSLEKNNFERIPE--SIIQLS 442
                 GLS    L    L   T+L  +  +Y    +L   LE N+  R+    +++ L 
Sbjct: 695 ------GLSGVSNLEQSDLKPLTSLMKISTSYQNPGKL-SCLELNDCSRLRSLPNMVNLE 747

Query: 443 RLVVLNLNYCERLQSL--------------------PKLPFNLQGIFAHHCTALSSI--S 480
            L  L+L+ C  L+++                    P+LP +L+   AH C +L SI   
Sbjct: 748 LLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQSLEFFNAHGCVSLKSIRLD 807

Query: 481 YKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLMAAAHWKHV-REK 526
           +K     +  S+ F L       +V D L  +Q MA    KH+ RE+
Sbjct: 808 FKKLPVHYTFSNCFDLSPQ----VVNDFL--VQAMANVIAKHIPRER 848

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 1   MASSSSL-HFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQS 59
           MASSSS+         VF+ F+G D R +F S L  AL +  I  FI  +   G E++  
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMANL 60

Query: 60  LGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
           L    E     +IFS     S  CL+EL KI E +     IV+ + Y+V+PS V+   G 
Sbjct: 61  LTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGK 120

Query: 120 FEDSFSKLE 128
           F D+F  LE
Sbjct: 121 FGDNFRALE 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 12/107 (11%)

Query: 114 RKQIGSFEDSFSKLEERFP-----------DKMQTGKKHICLDVAYFLKEERSDMVLSFL 162
           +K++   E +F KL+ R P           D +   +K+I LD+A F + E  + V+  L
Sbjct: 354 KKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLL 413

Query: 163 DACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESI 209
           + CGFF  + + VLV++CL+T+S  N + +H    D+ REI+  E++
Sbjct: 414 EGCGFFPHVEIDVLVDKCLVTISE-NRVWLHKLTQDIGREIINGETV 459

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSE 75
           VF++F+G++ R++F   L  A+  + I  F      RG  ++       E      IFSE
Sbjct: 360 VFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNYLFRRIEESRVAVAIFSE 419

Query: 76  SDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF---P 132
               S WCLDEL+K+ E       +VV V YR+  +  ++ +G+F D+   LE  +   P
Sbjct: 420 RYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYRSEP 479

Query: 133 DKMQTGKKHI 142
           +++Q  K+ +
Sbjct: 480 ERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
147787212	600	hypothetical protein VITISV_032562 [Viti	0.652	0.571	0.371	9e-42
359496034	1132	PREDICTED: TMV resistance protein N-like	0.652	0.303	0.326	2e-40
302398837	570	HD domain class transcription factor [Ma	0.836	0.771	0.309	4e-40
451798988	1219	TMV resistance protein N-like protein 6	0.534	0.230	0.413	2e-39
451798990	1335	TMV resistance protein N-like protein 7	0.534	0.210	0.406	3e-38
105923235	1139	TIR-NBS-LRR type disease resistance prot	0.652	0.301	0.360	5e-38
359486075	1291	PREDICTED: TMV resistance protein N-like	0.539	0.219	0.387	5e-35
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.591	0.25	0.343	7e-35
359493410	1212	PREDICTED: TMV resistance protein N-like	0.688	0.298	0.350	1e-34
237770137	774	TIR-NBS-LRR-type disease resistance-like	0.823	0.559	0.298	2e-34

>gi|147787212|emb|CAN75767.1| hypothetical protein VITISV_032562 [Vitis vinifera]

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 210/415 (50%), Gaps = 72/415 (17%)

Query: 139 KKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGD 198
           ++ I LD+A F K E  D V   L +CGFF  IG+ VL+++ LI VS  N + M+D L +
Sbjct: 171 ERDIFLDIACFCKWEDKDFVTEILASCGFFPDIGIRVLIDKSLIIVS-DNKLCMYDLLQE 229

Query: 199 MEREIVQKESINYPGECSPLWHHKDIYEVLIVNT------LVILNLS------------- 239
           M  EIV +ES+ YP + + LW H+D+ + L  NT       ++L+LS             
Sbjct: 230 MGWEIVWQESLKYPEKHNRLWIHEDVSDALTRNTGTKVVEGIVLDLSASKELHFSFDAFM 289

Query: 240 -------------------EYVSLNSLPAEILHLEFLKKLNLLG--CSKLKRLPE-FSSS 277
                              EY S   L A+      + KLN     C KLK LPE   + 
Sbjct: 290 KMNKLRLLKVCNMLLCGSFEYFSWKELCADSDACTRMNKLNQFKDYCLKLKELPEVLENM 349

Query: 278 GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN 337
           G + E++L GTAI++LPSSI  LS L+ L L +CK L  LP S+ +LKSL+ L L GCS 
Sbjct: 350 GSLLELFLYGTAIKKLPSSIQHLSGLVLLNLRECKSLAILPHSIRKLKSLQTLILSGCSK 409

Query: 338 LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG--GDKQMGLS 395
           L  LP   G+L+     L A GTA K E+P SI     NL  LS +   G   + +  L 
Sbjct: 410 LDNLPKGLGSLQGLEK-LEAAGTAIK-ELPPSI-SLLENLEVLSFEGCKGLESNPRNSLP 466

Query: 396 SPITLPLD-------GLHT-----TLTSLYLNYCGILE--LPD-----------SLEKNN 430
           S   LP +        LH+     +L  L L+ C ILE  +P+            L +NN
Sbjct: 467 SFQLLPAEIGRSRGFQLHSFFGLRSLRKLNLSDCNILEGAIPNDFSSLCSLEYLDLSRNN 526

Query: 431 FERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSST 485
           F  +P S+ QLS+L  L L YC+RLQSLP+LP +++ I A  CT   +I   SS 
Sbjct: 527 FVTLPASLNQLSQLKGLRLGYCKRLQSLPELPSSIEEIDAPDCTVTENILCPSSV 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 211/441 (47%), Gaps = 98/441 (22%)

Query: 133 DKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITM 192
           D +   +K+I LD+A F K E  D V+  LD CGFFA  G+  L+++ LIT+S+++ I M
Sbjct: 420 DGLDDKEKNIFLDIACFFKGEDKDHVIKILDGCGFFAVCGIRGLIDKSLITISNNDKIVM 479

Query: 193 HDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTL------VILNLSEYVSLNS 246
           HD L +M R+I+++ S   PG+ S LW +KD Y VL  NT       +  NLS+   ++ 
Sbjct: 480 HDLLQEMGRKIIRQTSPKEPGKRSRLWIYKDAYHVLSKNTGTQEVEGIFFNLSDIEEIHF 539

Query: 247 LPAEILHLEFLKKLNL--------------------------------LGCSKLKRL--- 271
                  ++ L+ L                                  L CS +K+L   
Sbjct: 540 TTKAFAGMDKLRLLKFYDYSPSTNSECTSKRKCKLPHDFSPKNLVDLSLSCSDVKQLWKG 599

Query: 272 ---------------------PEFSSSGKIEEIWLDG-TAIEELPSSIGCLSRLLYLYLS 309
                                P FS    +E++ L G T + E+  ++G L +L +L L 
Sbjct: 600 IKVLDKLKFMDLSHSKYLVETPNFSGISNLEKLDLTGCTYLREVHPTLGVLGKLSFLSLR 659

Query: 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSS 369
           DCK LK++P+S+ +LKSL+     GCS ++  P++FGNLE     LYA  TA    +PSS
Sbjct: 660 DCKMLKNIPNSICKLKSLETFIFSGCSKVENFPENFGNLEQLKE-LYADETAIS-ALPSS 717

Query: 370 IVGSNNNLYELSLDRSWGGDKQMGLSSPITL--------------PLDGLHTTLTSLYLN 415
           I     +L  L +  S+ G K    +S +TL              PL GL  +L  L L 
Sbjct: 718 IC----HLRILQV-LSFNGCKGPPSASWLTLLPRKSSNSGKFLLSPLSGL-GSLKELNLR 771

Query: 416 YCGILELPD-------------SLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462
            C I E  D              L  NNF  +P S+ QLS+LV L L  C RLQ+L +LP
Sbjct: 772 DCNISEGADLSHLAILSSLEYLDLSGNNFISLPSSMSQLSQLVSLKLQNCRRLQALSELP 831

Query: 463 FNLQGIFAHHCTALSSISYKS 483
            +++ I AH+C +L +IS +S
Sbjct: 832 SSIKEIDAHNCMSLETISNRS 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398837|gb|ADL36713.1| HD domain class transcription factor [Malus x domestica]

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 253/521 (48%), Gaps = 81/521 (15%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSI-YIIF 73
           DVFLSF+GEDTR  FT HLY+AL  K I+TFI  +L+RG++I+ +L +A+E S I  +IF
Sbjct: 18  DVFLSFRGEDTRTGFTDHLYNALVNKGIKTFIDRELRRGEKIAPALLEAIEESRISLVIF 77

Query: 74  SESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPD 133
           S++ ASSSWCLDEL +I+ECR +  QIV+ V Y+V+PSHVRKQ  +F D F++L  +  +
Sbjct: 78  SQTYASSSWCLDELNRILECRESKQQIVLPVFYKVDPSHVRKQKSNFGDKFTELVSKSGN 137

Query: 134 KMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMH 193
           K +       L V      E +D+              G PV      + + +     + 
Sbjct: 138 KEK-------LPVWKRALAEIADLS-------------GFPVKEGDYEVPIIND---IVK 174

Query: 194 DSLGDMEREIVQKESINY------PGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSL 247
           +S+  ++   ++K+SI++        +       KDI  VL  +     ++ + VSL+  
Sbjct: 175 ESIDRLKDSHLRKKSIDHLQTTLDSNDSYKEEPFKDIQRVLRKSYDDWDDVVQQVSLDMS 234

Query: 248 PAEILHLEFLKK------LNLLGCSKLKRLPEFSSSGKIEEIWL-DGTAIEELPSSIGCL 300
              +  L+  K       +N  GC  L+++P+ S S  ++ + L D  ++ E+  S+G L
Sbjct: 235 YKGMRQLKGFKNSAEFTSMNFRGCEFLEKIPDLSGSPNLKHLVLSDCKSLVEVDDSVGFL 294

Query: 301 SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGT 360
            +L+YL L+ C +LK   + L  L+SL+ L L GC+ L   P+       S + L  + +
Sbjct: 295 DKLVYLNLNGCSKLKRFATRLG-LRSLEWLYLKGCTRLGSFPEIEEGKMKSLTDLDIRQS 353

Query: 361 AAKREVPSSI----------VGSNNNLYELSLDRSWG------------------GDKQM 392
              RE+PSSI               NL   SL   +G                  G+ ++
Sbjct: 354 GI-RELPSSIAYLTGLQRLKANECENLTGTSLHHIYGLQDLIQVHFGKCPKLVTFGNHKV 412

Query: 393 GLS-----SPITLPLDGLH-------TTLTSLYLNYCGILELPD-SLEKNNFERIPESII 439
                   + ITL L  L            S +L   G   L    L  NNF  +P+ I 
Sbjct: 413 KFDEVSSCNSITLALPNLFDLDLGGCNLSESDFLVPLGCWALASLDLSGNNFVSLPDCID 472

Query: 440 QLSRLVVLNLNYCERLQSLPK-LPFNLQGIFAHHCTALSSI 479
           +   L+ L L+ C RL+ +P+ LP +L  ++   CT+L  I
Sbjct: 473 KFVNLMKLRLSGCRRLRKIPQVLPPSLCDLYLDDCTSLEKI 513

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 178/317 (56%), Gaps = 36/317 (11%)

Query: 233  LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGK-IEEIWLDGTAIE 291
            L +LNL E  SL SLP  I  L+ LK L L  C++LK+LPE   + + + E++LDG+ I 
Sbjct: 765  LALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGII 824

Query: 292  ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS 351
            ELPSSIGCL+ L++L L +CK+L SLP S  +L SL  L L GCS L+ LPDD G+L+  
Sbjct: 825  ELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCL 884

Query: 352  NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD---KQMGL---SSP---ITLP- 401
             + L A G+  + EVP SI     NL +LSL    GGD   + M     SSP   + LP 
Sbjct: 885  -AELNADGSGIQ-EVPPSIT-LLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPS 941

Query: 402  LDGLHTTLTSLYLNYCGILE--LPD-----------SLEKNNFERIPESIIQLSRLVVLN 448
              GL+ +L  L L  C + E  LP             L +N+F  IP S+  LSRL  L 
Sbjct: 942  FSGLY-SLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLT 1000

Query: 449  LNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQL--------FDLSDNFKLDRNA 500
            L YC+ LQSLP+LP +++ + AH CT+L + S  S            F+ ++ F+L  N 
Sbjct: 1001 LEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQ 1060

Query: 501  VRIIVEDALQDIQLMAA 517
               IV   L+ IQLM++
Sbjct: 1061 GSDIVGAILEGIQLMSS 1077

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 179/317 (56%), Gaps = 36/317 (11%)

Query: 233  LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGK-IEEIWLDGTAIE 291
            L +LNL E  SL SLP  I  L+ LK L L  C++LK+LPE   + + + E++LDG+ I 
Sbjct: 773  LALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGII 832

Query: 292  ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS 351
            ELPSSIGCL+ L++L L +CK+L SLP S  +L SL+ L L GCS L+ LPD+ G+L+  
Sbjct: 833  ELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCL 892

Query: 352  NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD---KQMGL---SSP---ITLP- 401
             + L A G+  + EVP SI     NL  LSL    GG+   + M     SSP   + LP 
Sbjct: 893  -TELNADGSGVQ-EVPPSIT-LLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPS 949

Query: 402  LDGLHTTLTSLYLNYCGILE--LPD-----------SLEKNNFERIPESIIQLSRLVVLN 448
              GL+ +L  L L  C + E  LP             L +N+F  IP S+  LSRL  L 
Sbjct: 950  FSGLY-SLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLT 1008

Query: 449  LNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQL--------FDLSDNFKLDRNA 500
            L YC+ LQSLP+LP +++ + AH CT+L + +  SS           F+ ++ F+L  N 
Sbjct: 1009 LEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQ 1068

Query: 501  VRIIVEDALQDIQLMAA 517
               IV   L+ IQLM++
Sbjct: 1069 GSDIVGAILEGIQLMSS 1085

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105923235|gb|ABF81465.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 196/397 (49%), Gaps = 54/397 (13%)

Query: 114 RKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGL 173
           ++ IG +  S  KL+  F        K I LD+  F      D V   LD CGF + IG+
Sbjct: 590 KRSIGEWR-SARKLQISFNALDDDDIKGIFLDITCFFIGMDVDYVSKLLDGCGFHSRIGI 648

Query: 174 PVLVNRCLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVL----I 229
            VL+ R LIT +  N + MHD L DM REI+++ S ++PG+   L   KD+ + L     
Sbjct: 649 EVLMQRSLITTNWYNKLRMHDLLRDMGREIIREMSPDHPGKRRRLCFQKDVLDALRKKMF 708

Query: 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTA 289
           +N L ILNLS  V L S P   + L  L+++ L GC                      T+
Sbjct: 709 LNRLKILNLSYSVHL-STPPHFMGLPCLERIILEGC----------------------TS 745

Query: 290 IEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE 349
           + E+  SIG L  L  L L  CK LK+LP S+  LK L+ LN+  C NL++LPD  G++E
Sbjct: 746 LVEVHQSIGHLDSLTLLNLEGCKSLKNLPESICYLKCLESLNISRCINLEKLPDQLGDME 805

Query: 350 ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR--------SWGGDKQMGLSSPITLP 401
           A  + L A GTA +R +PSSI G   NL  LSL          SW       LS  I+ P
Sbjct: 806 AL-TMLLADGTAIER-LPSSI-GHLKNLSNLSLGGFKYDLSSVSWFSHILPWLSPRISNP 862

Query: 402 LDGLHT-----TLTSLYLNYCGILELPD-----SLEKNNFER-----IPESIIQLSRLVV 446
              L T     +L  L L+YCG+ +  D     SL++ NF R     +P  I +L  L V
Sbjct: 863 RALLPTFTGLNSLRRLDLSYCGLSDGTDLGGLSSLQELNFTRNKLNNLPNGIDRLPELQV 922

Query: 447 LNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKS 483
           L L +C  L S+  LP  L  +  +HCT++  +S  S
Sbjct: 923 LCLYHCADLLSISDLPSTLHSLMVYHCTSIERLSIHS 959

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/320 (38%), Positives = 176/320 (55%), Gaps = 36/320 (11%)

Query: 230  VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGK-IEEIWLDGT 288
            +N L + NL E  SL SLP  I  L+ LK L L  C +LK+LPE   + + ++E++LD T
Sbjct: 764  LNGLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDT 823

Query: 289  AIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNL 348
             + ELPSSI  L+ L+ L L +CKRL SLP S+ +L SL+ L L GCS L++LPDD G+L
Sbjct: 824  GLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSL 883

Query: 349  EASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG---DKQMGLSSPITLPLDGL 405
            +     L A G+  + EVPSSI      L  LSL    GG    + + LS   + P DGL
Sbjct: 884  QCL-LKLKANGSGIQ-EVPSSIT-LLTRLQVLSLAGCKGGGSKSRNLALSLRAS-PTDGL 939

Query: 406  HT-------TLTSLYLNYCGILE--LPD-----------SLEKNNFERIPESIIQLSRLV 445
                     +L  L L+   +LE  LP             L +NNF  +P S+ +L  L 
Sbjct: 940  RLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLR 999

Query: 446  VLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQL--------FDLSDNFKLD 497
             L + +C+ LQSLP+LP +++ + A+ CT+L + SY SS           F+ S+ F+L 
Sbjct: 1000 RLIVEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLV 1059

Query: 498  RNAVRIIVEDALQDIQLMAA 517
             N     VE  LQ+I+L+A+
Sbjct: 1060 GNEQSDTVEAILQEIRLVAS 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 184/390 (47%), Gaps = 79/390 (20%)

Query: 133 DKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITM 192
           D +   +K I LD+A F K +  D V+  LD CGF A  G+ VL +RCLI +   N + M
Sbjct: 429 DGLDFTQKEIFLDLACFFKGQEYDFVIKILDGCGFHAKSGIRVLSDRCLIDLL-DNRLWM 487

Query: 193 HDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVL------------------------ 228
           HD +  M  EIV++E    PG+ S LW ++ IY VL                        
Sbjct: 488 HDLIQQMGWEIVRQECPKDPGKWSRLWDYEHIYSVLKKNTVLDNLNTIELSNSQHLIHLP 547

Query: 229 ---------------------------IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLN 261
                                      ++N L+ LNL     L S P  I  LE LK L+
Sbjct: 548 NFSSMPNLERLVLEGCTSFLEVDPSIEVLNKLIFLNLKNCKKLRSFPRSI-KLECLKYLS 606

Query: 262 LLGCSKLKRLPEFSSSGK-IEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS 320
           L GCS LK  PE   + + + E++LDGTAI ELP SIG L+ L+ L L +CKRLKSLPSS
Sbjct: 607 LSGCSDLKNFPEIQGNMQHLSELYLDGTAISELPFSIGYLTGLILLDLENCKRLKSLPSS 666

Query: 321 LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYEL 380
           + +LKSL+ L L  CS L+  P+   N+E     L   GTA K+  PS  +   N L  L
Sbjct: 667 ICKLKSLETLILSACSKLESFPEIMENMEHLKKLLL-DGTALKQLHPS--IEHLNGLVSL 723

Query: 381 SLDRSWGGDKQMGLSSPITLPLD-GLHTTLTSLYLNYCGIL-ELPDSL-----------E 427
           +L       K +      TLP   G   +L +L ++ C  L +LP++L           +
Sbjct: 724 NLRDC----KNLA-----TLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQAD 774

Query: 428 KNNFERIPESIIQLSRLVVLNLNYCERLQS 457
                + P SI+ L  L +L+   C+ L S
Sbjct: 775 GTLVRQPPSSIVLLRNLEILSFGGCKGLAS 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493410|ref|XP_002279970.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 213/422 (50%), Gaps = 60/422 (14%)

Query: 133 DKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITM 192
           D +   +K+I LD+A F K E  D V+  LD CGFF+  G+  LVN+ LI++ + N + M
Sbjct: 559 DGLDDKEKNIFLDIACFFKGEDKDYVIEILDGCGFFSSCGIRTLVNKSLISI-YGNKLEM 617

Query: 193 HDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNT----LVILNLSEYV-----S 243
           HD + +M  EIV+++ +   G+ S LW H+DI +VL  NT    +  L LS Y      S
Sbjct: 618 HDLIQEMGIEIVRQQFVQELGKRSRLWFHEDIIDVLKKNTGSEKIEGLFLSSYFDLYGYS 677

Query: 244 LNSLPAE-----ILHL--------------EFLKKLNLLGCSKLKRL---PEFSSSGKIE 281
           L SLP +     ++HL              + L+KL  +  S  K L   P  S    +E
Sbjct: 678 LKSLPNDFNAKNLVHLSMPCSHIKQLWKGIKVLEKLKCMDLSHSKYLIETPNLSRVTNLE 737

Query: 282 EIWL-DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQR 340
            + L D  ++ ++  S+  L  L +L   +CK LKSLPS    LKSL  L L GCS  ++
Sbjct: 738 RLVLEDCVSLCKVHPSLRDLKNLNFLSFKNCKMLKSLPSGPYDLKSLATLILSGCSKFEQ 797

Query: 341 LPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL-------DRSWGGDKQMG 393
            P++FG LE     LYA GTA  RE+PSS+  S  NL  LS          SW   ++  
Sbjct: 798 FPENFGYLEMLKK-LYADGTAL-RELPSSL-SSLRNLEILSFVGCKGPPSASWLFPRRSS 854

Query: 394 LSSPITL-PLDGLHTTLTSLYLNYCGILE------------LPD-SLEKNNFERIPESII 439
            S+   L  L GL  +L  L L+ C + +            L D  L +NNF  +P ++ 
Sbjct: 855 NSTGFILHNLSGL-CSLRKLDLSDCNLSDETNLSCLVYLSSLKDLYLCENNFVTLP-NLS 912

Query: 440 QLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRN 499
           +LSRL    L  C RLQ LP LP ++  + A +CT+L ++S + + Q F L +    D N
Sbjct: 913 RLSRLERFRLANCTRLQELPDLPSSIVQVDARNCTSLKNVSLR-NVQSFLLKNRVIWDLN 971

Query: 500 AV 501
            V
Sbjct: 972 FV 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237770137|gb|ACR19032.1| TIR-NBS-LRR-type disease resistance-like protein [Pyrus x bretschneideri]

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 167/560 (29%), Positives = 238/560 (42%), Gaps = 127/560 (22%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSLGDAVEVSSI-YII 72
           DVFLSF+GEDTR  FTSHL++AL  +    FI  D LKRG EI   L  A+E S I  I+
Sbjct: 15  DVFLSFRGEDTRHGFTSHLHAALQNRGFAAFIDEDNLKRGGEIKPELLRAIEESRISVIV 74

Query: 73  FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLE---- 128
           FS+S A SSWCLDEL+KI+ECR   GQ V+ + Y V+PSHVRKQ G    +F + E    
Sbjct: 75  FSKSYAESSWCLDELVKIMECRERLGQQVLPIFYHVDPSHVRKQEGCLAGAFQEHEDGIL 134

Query: 129 ------ERFPDKMQTGKKHICLDVAYFLK-------EERSDM------VLSFLDACGFFA 169
                 ER P K +  +    L  A  L         E  D+      +   L     F 
Sbjct: 135 KEKDEKEREPKKKRVKQWREALTQAANLSGHHLNNGPEAKDIKTIVGNIRELLRGTDEFQ 194

Query: 170 GIGLPVLVNR------------CLITVSHSNTITMHDSLGDMEREIVQKESINYPGECSP 217
               PV ++              LITV     + MHD + +M + I+ ++S   PG  S 
Sbjct: 195 VAKYPVGIDSRVQPIISVLREWYLITVEWGE-LKMHDLIQEMGKTIISEKSPTQPGRWSR 253

Query: 218 LWHHKDIYEVLI-------------------------------VNTLVILNLSEYV---- 242
            W+ + I +VL                                +  L +L LS YV    
Sbjct: 254 PWNLEAITDVLTNKSGTEEIEVLSLHLPSPEKKASFRTKAFVNMKKLRLLRLS-YVELAG 312

Query: 243 SLNSLPAEILHL-------EFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELP 294
           S    P E+  L       E++ + +LL   KL  L   FS+   + + W +   +E L 
Sbjct: 313 SFKHFPKELRWLCWHGFPFEYMPE-HLLNQPKLVALDLRFSN---LRKGWKNSKPLENLK 368

Query: 295 -------------SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRL 341
                             L  L  L  S C+ L  +  S+ QLK L  +N + C+ L+ L
Sbjct: 369 ILDFSHSKKLKKSPDFSRLPNLGELDFSSCRSLSKIHPSIGQLKKLSWVNFNFCNKLRYL 428

Query: 342 PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP 401
           P +F  L+ S  TL      A RE+P                         GL   ++L 
Sbjct: 429 PAEFCKLK-SVETLDVFYCEALRELPE------------------------GLGKMVSLR 463

Query: 402 LDGLHTTLTSLYLNYCGILELPD--SLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459
             G + T    + N  G L      S+   ++  +P S+  LS LV L +  C+ L+++P
Sbjct: 464 KLGTYGTAIKQFPNDFGRLISLQVLSVGGASYRNLP-SLSGLSNLVELLVLNCKNLRAIP 522

Query: 460 KLPFNLQGIFAHHCTALSSI 479
            LP NL+ ++   C AL ++
Sbjct: 523 DLPTNLEILYVRRCIALETM 542

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.222	0.095	0.504	3.1e-52
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.249	0.101	0.435	5e-42
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.509	0.221	0.328	1e-40
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.279	0.128	0.450	7.5e-39
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.224	0.099	0.446	7.6e-39
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.237	0.080	0.403	5e-38
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.258	0.116	0.440	4.9e-36
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.283	0.132	0.423	2.6e-35
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.228	0.100	0.443	2.1e-34
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.281	0.124	0.42	2.5e-34

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
 Identities = 60/119 (50%), Positives = 81/119 (68%)

Query:    15 DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYII-F 73
             DVFLSF+G DTR+NFT HL  AL  + I++FI + L+RGD ++ +L D +E S I II F
Sbjct:    12 DVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDRIEKSKIAIIVF 70

Query:    74 SESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFP 132
             S + A+S+WCL EL+KI+ECR +  Q+VV + Y+V+ S V KQ  SF   F   E  FP
Sbjct:    71 STNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAVPFKLPELTFP 129

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 5.0e-42, Sum P(3) = 5.0e-42
 Identities = 61/140 (43%), Positives = 83/140 (59%)

Query:     2 ASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSL 60
             +SSSS      + DVF+SF+GED R  F SHL+    +  I+ F  + DL+RG  IS  L
Sbjct:     6 SSSSSSSSTVWKTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPEL 65

Query:    61 GDAVEVSSIYIIF-SESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
              DA++ S   I+  S + A+SSWCLDELLKI+EC  +    +V + Y V+PS VR+Q GS
Sbjct:    66 IDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECNKD---TIVPIFYEVDPSDVRRQRGS 122

Query:   120 FEDSFSKLEERFPDKMQTGK 139
             F +      E   DK + GK
Sbjct:   123 FGEDV----ESHSDKEKVGK 138

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
 Identities = 99/301 (32%), Positives = 133/301 (44%)

Query:   243 SLNSLPAEIXXXXXXXXXXXXGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSR 302
             SL SLP               GC KLK     S S  IE + L+GTAIE +   I  L  
Sbjct:   692 SLESLPKGFKIKSLKTLILS-GCLKLKDFHIISES--IESLHLEGTAIERVVEHIESLHS 748

Query:   303 LLYLYLSDCXXXXXXXXXXXXXXXXXXXXXHGCSNLQRLPDDFGNLEASNSTLYAKGTAA 362
             L+ L L +C                      GCS L+ LP     +E     L   GT+ 
Sbjct:   749 LILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECLE-ILLMDGTSI 807

Query:   363 KREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILEL 422
             K+    S +   +NL   S  R    D   GL   + LP  G ++ L+ LYL  C I +L
Sbjct:   808 KQTPEMSCL---SNLKICSFCRPVIDDST-GL---VVLPFSG-NSFLSDLYLTNCNIDKL 859

Query:   423 PDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAH 471
             PD            L +NN E +PESI +L  L++L+L +C RL+SLP LP NLQ + AH
Sbjct:   860 PDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAH 919

Query:   472 HCTALSSISYKSSTQL--------FDLSDNFKLDRNAVRIIVEDALQDIQLMA--AAHWK 521
              C +L ++S   +  L        F  +D FKL++     IV  A    QL+A  + H  
Sbjct:   920 GCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQLLARTSRHHN 979

Query:   522 H 522
             H
Sbjct:   980 H 980

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 294 (108.6 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
 Identities = 69/153 (45%), Positives = 98/153 (64%)

Query:     2 ASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSL 60
             +SSSS  + +   DVFLSF+GEDTR  FTSHLY  L+ K I+TF  +  L+ G  I   L
Sbjct:     3 SSSSSSRWSY---DVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGEL 59

Query:    61 GDAVEVSSIYII-FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
               A+E S   I+ FSE+ A+S WCL+EL+KI+EC+T + Q V+ + Y V+PSHVR Q  S
Sbjct:    60 CKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKES 119

Query:   120 FEDSFSKLEERFPDKMQTGKK-HICLDVAYFLK 151
             F  +F + E ++ D ++  ++  I L+ A  LK
Sbjct:   120 FAKAFEEHETKYKDDVEGIQRWRIALNEAANLK 152

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
 Identities = 54/121 (44%), Positives = 77/121 (63%)

Query:    15 DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIYIIF 73
             DVF+SF+G D R NF SHLY +L +  I TF+ + +L+RG+ IS  L +A+E S I I+ 
Sbjct:    18 DVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIVV 77

Query:    74 SESD-ASSSWCLDELLKIVEC-RTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF 131
                D ASS+WCLDEL+ I++  + N   +V  +   V+PS +R Q GS+  SFSK +   
Sbjct:    78 LTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNSH 137

Query:   132 P 132
             P
Sbjct:   138 P 138

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.0e-38, Sum P(3) = 5.0e-38
 Identities = 52/129 (40%), Positives = 80/129 (62%)

Query:    16 VFLSFKGEDTRDNFTSHLYSALSQKC-IETFIGND-LKRGDEISQSLGDAVEVSSI-YII 72
             VFLSF+G DTR NF   LY AL++K  +  F  N+ +++GD+I  SL +A+E S+   II
Sbjct:   178 VFLSFRGFDTRTNFCERLYIALNEKQNVRVFRDNEGMEKGDKIDPSLFEAIEDSAASVII 237

Query:    73 FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFP 132
              S + A+SSWCLDEL  + + R++  + ++ + Y V P  VRKQ G F   F +  + F 
Sbjct:   238 LSTNYANSSWCLDELALLCDLRSSLKRPMIPIFYGVNPEDVRKQSGEFRKDFEEKAKSFD 297

Query:   133 DK-MQTGKK 140
             ++ +Q  K+
Sbjct:   298 EETIQRWKR 306

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
 Identities = 63/143 (44%), Positives = 89/143 (62%)

Query:     1 MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQS 59
             MASSSS      + DVFLSF+GEDTR N  SHL+  L  K + TF  +  L+ GD IS+ 
Sbjct:     1 MASSSSSPIW--KYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEE 58

Query:    60 LGDAVEVSSI-YIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIG 118
             +  A++ S+   +I SE+ ASSSWCLDEL  +++        VV + Y V+PSHVR Q G
Sbjct:    59 ISRAIQNSTYALVILSENYASSSWCLDELRMVMDLHLKNKIKVVPIFYGVDPSHVRHQTG 118

Query:   119 SFEDSFSKLEE-RFPDKMQTGKK 140
             SF  +F K ++ + P+K+ T ++
Sbjct:   119 SF--TFDKYQDSKMPNKVTTWRE 139

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
 Identities = 64/151 (42%), Positives = 92/151 (60%)

Query:     1 MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSL 60
             MASSSS   ++   DVF SF GED R  F SH    L +K I TF  N+++R   I+  L
Sbjct:     1 MASSSSSS-RNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPEL 59

Query:    61 GDAVEVSSI-YIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
              +A++ S I  I+FS++ ASSSWCL+ELL+I+ C    GQ V+ V Y ++PSH+RKQ G 
Sbjct:    60 VEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGE 119

Query:   120 FEDSFSKLEERFPDKMQTGKKHICLDVAYFL 150
             F ++F K  +   ++++   K    DV+  L
Sbjct:   120 FGEAFKKTCQNQTEEVKNQWKQALTDVSNIL 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
 Identities = 55/124 (44%), Positives = 74/124 (59%)

Query:     4 SSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDA 63
             SSS  + H    VF SF GED R +F SH+     +  I  F+ N++KRG+ I   L  A
Sbjct:    55 SSSCIWTHQ---VFPSFSGEDVRRDFLSHIQMEFQRMGITPFVDNEIKRGESIGPELLRA 111

Query:    64 VEVSSIYIIF-SESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFED 122
             +  S I II  S + ASS WCLDEL++I++CR  YGQ V+A+ Y+V+PS V+   G F  
Sbjct:   112 IRGSKIAIILLSRNYASSKWCLDELVEIMKCREEYGQTVMAIFYKVDPSDVKNLTGDFGK 171

Query:   123 SFSK 126
              F K
Sbjct:   172 VFRK 175

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
 Identities = 63/150 (42%), Positives = 81/150 (54%)

Query:     5 SSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAV 64
             SSL  Q+  + VFLSF+GED R    SH+     +  I  FI N++KRG  I   L  A+
Sbjct:    32 SSLS-QNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAI 90

Query:    65 EVSSIYIIF-SESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDS 123
               S I II  S +  SS WCLDEL++I++CR   GQ V+ V Y V+PS VRKQ G F   
Sbjct:    91 RGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKV 150

Query:   124 FSKLEERFPDKMQTGKKHICLDVAYFLKEE 153
             F K     P++M    K      A  L E+
Sbjct:   151 FKKTCVGRPEEMVQRWKQALTSAANILGED 180

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	526
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-28
pfam01582	135	pfam01582, TIR, TIR domain	1e-27
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-22
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-13
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  118 bits (298), Expect = 4e-28
 Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 8/130 (6%)

Query: 1   MASSSSLHFQHNRN---DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEIS 57
           MASSSS     +RN   DVF SF GED R  F SH    L +K I  F  N+++R   + 
Sbjct: 1   MASSSS----SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLD 56

Query: 58  QSLGDAVEVSSI-YIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQ 116
             L  A+  S I  ++FS++ ASSSWCL+ELL+IV C+   GQ+V+ V Y ++PSHVRKQ
Sbjct: 57  PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQ 116

Query: 117 IGSFEDSFSK 126
            G F ++F K
Sbjct: 117 TGDFGEAFEK 126

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  106 bits (268), Expect = 1e-27
 Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKCIETFI-GNDLKRGDEISQSLGDAVEVSSIYI-IF 73
           VF+SF G+D RD F SHL   L +K I+  I   D   G+ I ++L +A+E S   I IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 74  SESDASSSWCLDELLKIVECR--TNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF 131
           S + ASS WCLDEL++IV+C       ++++ + Y+V+PS VR Q G F  +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 132 PDKMQTGKK 140
            DK    + 
Sbjct: 121 GDKEDKIRF 129

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 13  RNDVFLSFKG-EDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYI 71
             DVF+S+ G ED R+ F SHL   L    +  FI +    G ++ + + +A+E S I I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAI 59

Query: 72  -IFSESDASSSWCLDELLKIVECRTNYGQI-VVAVCYRVEPSHVRKQIGSFEDSFSKLEE 129
            + S + A S WCLDEL+  +E     G + V+ + Y V PS VRKQ G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 130 RFPDK 134
           ++P+ 
Sbjct: 120 KWPED 124

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 91/300 (30%)

Query: 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTA 289
           +N L  L++S   +L  LP  I +L+ L +LNL GCS+LK  P+ S++  I  + LD TA
Sbjct: 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTN--ISWLDLDETA 736

Query: 290 IEELPSSIGCLSRLLYL-------------------------------YLSDCKRLKSLP 318
           IEE PS++  L  L  L                               +LSD   L  LP
Sbjct: 737 IEEFPSNLR-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795

Query: 319 SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLY 378
           SS+  L  L+ L +  C NL+ LP    NLE+                          L 
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLPTGI-NLES--------------------------LE 828

Query: 379 ELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESI 438
            L L          G S   T P   + T ++ L L+  GI E+P  +EK          
Sbjct: 829 SLDLS---------GCSRLRTFP--DISTNISDLNLSRTGIEEVPWWIEK---------- 867

Query: 439 IQLSRLVVLNLNYCERLQ----SLPKLPFNLQGIFAHHCTALSSISYK-SSTQLFDLSDN 493
              S L  L++N C  LQ    ++ KL  +L+ +    C AL+  S+  S +++   +DN
Sbjct: 868 --FSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCGALTEASWNGSPSEVAMATDN 924

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 108/424 (25%), Positives = 170/424 (40%), Gaps = 108/424 (25%)

Query: 140 KHI-CLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRCLITVSHSNTITMHDSLGD 198
           +HI CL    F  E+ +D+ L   ++      IGL  LV++ LI V   + + MH  L +
Sbjct: 443 RHIACL----FNGEKVNDIKLLLANS-DLDVNIGLKNLVDKSLIHVRE-DIVEMHSLLQE 496

Query: 199 MEREIVQKESINYPGECSPLWHHKDIYEVLIVNT------LVILNLSE----YVSLNSLP 248
           M +EIV+ +S N PGE   L   KDI +VL  NT       + L++ E    ++  N+  
Sbjct: 497 MGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555

Query: 249 AEILHLEFLK-------------------------KLNLLGCSK--LKRLPEFSSSGKIE 281
             + +L FLK                         KL LL   K  L+ +P       + 
Sbjct: 556 G-MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614

Query: 282 EIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRL 341
           ++ + G+ +E+L   +  L+ L  + L   K LK +P  LS   +L+ L L  CS+L  L
Sbjct: 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVEL 673

Query: 342 PDD-------------------------------------------FGNLEASNSTLYAK 358
           P                                             F ++  + S L   
Sbjct: 674 PSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733

Query: 359 GTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL-NYC 417
            TA + E PS++     NL EL L       K      P+T  +  L  +LT L+L +  
Sbjct: 734 ETAIE-EFPSNL--RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIP 789

Query: 418 GILELPDSLEK------------NNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNL 465
            ++ELP S++              N E +P   I L  L  L+L+ C RL++ P +  N+
Sbjct: 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTG-INLESLESLDLSGCSRLRTFPDISTNI 848

Query: 466 QGIF 469
             + 
Sbjct: 849 SDLN 852

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 66/280 (23%), Positives = 102/280 (36%), Gaps = 20/280 (7%)

Query: 224 IYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLG--CSKLKRLPEFSSSGKIE 281
              +L +  L  L+L+    L S  +E+L L  L  L+L     + +  L     S  ++
Sbjct: 86  SENLLNLLPLPSLDLNL-NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS-NLK 143

Query: 282 EIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRL 341
           E+ L    IE LPS +  L  L  L LS    L  LP  LS L +L  L+L G + +  L
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDL 201

Query: 342 PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP 401
           P +   L A    L     +    +  S + +  NL  L L  +    K   L   I   
Sbjct: 202 PPEIELLSALE-ELDLSNNSIIELL--SSLSNLKNLSGLELSNN----KLEDLPESIGNL 254

Query: 402 LDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL 461
                + L +L L+   I  +       N   +  S   LS  + L       L+ L  L
Sbjct: 255 -----SNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Query: 462 PFNLQGIFAHHCTALSS--ISYKSSTQLFDLSDNFKLDRN 499
              L+ +     + L +  I     T   +     +   N
Sbjct: 310 LLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNN 349

Length = 394

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 7   LHFQHNRN-----DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSL 60
           LH+  + +     DVF++ +G DT+    + LY  LS+  +  F+ N ++K GD++   +
Sbjct: 15  LHYPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKI 74

Query: 61  GDAVEVSSIYI-IFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVR 114
             A+    + + +FS     S +CL EL  I+E +      V+ +   V+PS +R
Sbjct: 75  NSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 279 KIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN 337
            ++ I L G +I   +P S+G ++ L  L LS      S+P SL QL SL++LNL+G S 
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 338 LQRLPDDFG 346
             R+P   G
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 36/246 (14%)

Query: 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGC---------SKLKRLPEFSSSG--- 278
           + L  L+LS    + SLP+ + +L  LK L+L            S L  L     SG   
Sbjct: 140 SNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 279 -----------KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSL 327
                       +EE+ L   +I EL SS+  L  L  L LS   +L+ LP S+  L +L
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNL 257

Query: 328 KLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW- 386
           + L+L    N        G+L  +   L   G +    +P   +        L+L  +  
Sbjct: 258 ETLDLSN--NQISSISSLGSL-TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Query: 387 ---GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGI----LELPDSLEKNNFERIPESII 439
                   + L++ I    +       S+  +   +      L +S       + P +I 
Sbjct: 315 ALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIG 374

Query: 440 QLSRLV 445
            L  LV
Sbjct: 375 SLLDLV 380

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
PLN03194	187	putative disease resistance protein; Provisional	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.54
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.32
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
PLN03150	623	hypothetical protein; Provisional	98.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.67
PLN03150	623	hypothetical protein; Provisional	98.62
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.61
smart00255	140	TIR Toll - interleukin 1 - resistance.	98.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.53
KOG4341	483	consensus F-box protein containing LRR [General fu	98.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.45
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
PRK15386	426	type III secretion protein GogB; Provisional	98.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	97.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.76
KOG4341	483	consensus F-box protein containing LRR [General fu	97.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.04
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	97.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.63
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.24
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.97
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.27
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.27
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.2
smart00370	26	LRR Leucine-rich repeats, outliers.	86.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.37
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.59
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.1

>PLN03210 Resistant to P

Probab=100.00  E-value=8.8e-45  Score=410.29  Aligned_cols=460  Identities=32%  Similarity=0.489  Sum_probs=366.6

Q ss_pred             CCCCCCCCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccc
Q 038130            1 MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDAS   79 (526)
Q Consensus         1 ~~~~~~~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~   79 (526)
                      |++|||+ +...+|||||||+|+|.++.|..|++.+|.++|+.+|+|+++++|+.|+..+.+.-+++.+| ++++..+..
T Consensus         1 ~~~~~~~-~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSSSS-SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCCCC-CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            5665543 45689999999999999999999999999999999999999999999999999999999999 778899999


Q ss_pred             hhhcHHHHHHHHHHHhhCCCeEEEEEeeccchhhhhccccHHHHHHHHHh--------hchhhhh---------------
Q 038130           80 SSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEE--------RFPDKMQ---------------  136 (526)
Q Consensus        80 ~~~~~~~w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~--------i~~~~~~---------------  136 (526)
                      ++|+.+|..+|.++.+.....|+|++|+.=|+++|+|-..|...|.+...        -|++++.               
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~  159 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN  159 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence            99999999999999988889999999999999999999999998876532        2333221               


Q ss_pred             --------------------------------------------------------------------------------
Q 038130          137 --------------------------------------------------------------------------------  136 (526)
Q Consensus       137 --------------------------------------------------------------------------------  136 (526)
                                                                                                      
T Consensus       160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~v  239 (1153)
T PLN03210        160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV  239 (1153)
T ss_pred             HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 038130          137 --------------------------------------------------------------------------------  136 (526)
Q Consensus       137 --------------------------------------------------------------------------------  136 (526)
                                                                                                      
T Consensus       240 fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~  319 (1153)
T PLN03210        240 FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ  319 (1153)
T ss_pred             EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 038130          137 --------------------------------------------------------------------------------  136 (526)
Q Consensus       137 --------------------------------------------------------------------------------  136 (526)
                                                                                                      
T Consensus       320 ~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L  399 (1153)
T PLN03210        320 WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYL  399 (1153)
T ss_pred             cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------cCCceEEeehhhccccchHHHHHHHHhhCCCCcccchHHHhhcc
Q 038130          137 ------------------------------------TGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRC  180 (526)
Q Consensus       137 ------------------------------------~~~~Li~lwiAegf~~~~~~~~~~~~~~~~~~~~~~~~~Li~~s  180 (526)
                                                          +.++.+++|||++|.+.+.+.+..+.+++++.+..+++.|+++|
T Consensus       400 ~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ks  479 (1153)
T PLN03210        400 RGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKS  479 (1153)
T ss_pred             cCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcC
Confidence                                                23678999999999988888888888888888888899999999


Q ss_pred             ceeeecCCeEEechhHHHHHHHHHHhhccCCCCCCCCCCChhhHHHHhhcC-----------------------------
Q 038130          181 LITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVN-----------------------------  231 (526)
Q Consensus       181 l~~~~~~~~~~mhdl~~dla~~i~~~e~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------  231 (526)
                      |++.. .+.++|||++|+||+++++++. ..++++.++|.+.++++++..+                             
T Consensus       480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m  557 (1153)
T PLN03210        480 LIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM  557 (1153)
T ss_pred             CEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence            99987 6789999999999999998886 6788999999999988876533                             


Q ss_pred             -cceEEEeccCC------CCCCCChhccccC-CCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCC
Q 038130          232 -TLVILNLSEYV------SLNSLPAEILHLE-FLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRL  303 (526)
Q Consensus       232 -~l~~L~l~~~~------~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L  303 (526)
                       +++.|.+..+.      ....+|..+..++ .|+.|++.++ .++.+|......+|+.|+++++.+..+|..+..+++|
T Consensus       558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~L  636 (1153)
T PLN03210        558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGL  636 (1153)
T ss_pred             ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCccccccccccccCCCC
Confidence             23444443321      1113455555543 4788888775 3666776556788999999999999999999999999


Q ss_pred             CEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130          304 LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       304 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      ++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+ .|++++|.....+|..+ .+ ++|+.|++ 
T Consensus       637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~-~L~L~~c~~L~~Lp~~i-~l-~sL~~L~L-  711 (1153)
T PLN03210        637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE-DLDMSRCENLEILPTGI-NL-KSLYRLNL-  711 (1153)
T ss_pred             CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC-EEeCCCCCCcCccCCcC-CC-CCCCEEeC-
Confidence            9999998877888886 88899999999999999999999999999999 99999976558888765 44 89999999 


Q ss_pred             cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------------------------------------
Q 038130          384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------------------------------------  425 (526)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------------------------------------  425 (526)
                         .+|..+...+.       ..++|+.|++++|.+..+|..                                      
T Consensus       712 ---sgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        712 ---SGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             ---CCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence               56654332221       123666666666666555532                                      


Q ss_pred             ---cCCC-CcccccHHHhccCCCCEecccCCccCCcCCCc--cccccccccccccccccC
Q 038130          426 ---LEKN-NFERIPESIIQLSRLVVLNLNYCERLQSLPKL--PFNLQGIFAHHCTALSSI  479 (526)
Q Consensus       426 ---l~~~-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~l~~c~~L~~l  479 (526)
                         +++| .+..+|.+++++++|+.|+|++|..++.+|..  +++|+.|++++|..+..+
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence               1122 34457878888888888888888888877753  567777777777665543

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-48  Score=419.39  Aligned_cols=425  Identities=20%  Similarity=0.235  Sum_probs=278.6

Q ss_pred             EecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhC
Q 038130           18 LSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNY   97 (526)
Q Consensus        18 ~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~   97 (526)
                      =|...+|||.+|.++||..-..      .++.+   +++|++||+||+|||||++++|+.|+.|.+.+||+++.+.....
T Consensus       315 ~~L~~~eaW~LF~~~v~~~~~~------~~~~i---~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~  385 (889)
T KOG4658|consen  315 ECLTPEEAWDLFQKKVGPNTLG------SHPDI---EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS  385 (889)
T ss_pred             cccCccccHHHHHHhhcccccc------ccccH---HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence            4678899999999999881111      11134   99999999999999999999999999999999999999866221


Q ss_pred             --------CC---eEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccc--hHHHHHHHHhh
Q 038130           98 --------GQ---IVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEE--RSDMVLSFLDA  164 (526)
Q Consensus        98 --------~~---~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~--~~~~~~~~~~~  164 (526)
                              ..   .|+..||++||.++| .||+|||+||+||+|      ++++||.+||||||+..  .+..+++.++.
T Consensus       386 ~~~~~~~~~~~i~~iLklSyd~L~~~lK-~CFLycalFPED~~I------~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~  458 (889)
T KOG4658|consen  386 LAADFSGMEESILPILKLSYDNLPEELK-SCFLYCALFPEDYEI------KKEKLIEYWIAEGFIDPLDGGETAEDVGYD  458 (889)
T ss_pred             ccCCCCchhhhhHHhhhccHhhhhHHHH-HHHHhhccCCccccc------chHHHHHHHHhccCcCccccccchhcchHH
Confidence                    12   356669999999999 899999999999999      99999999999999966  34566667775


Q ss_pred             CCCCcccchHHHhhccceeeec----CCeEEechhHHHHHHHHHH-----hhccCCCCC--C------------CCC-CC
Q 038130          165 CGFFAGIGLPVLVNRCLITVSH----SNTITMHDSLGDMEREIVQ-----KESINYPGE--C------------SPL-WH  220 (526)
Q Consensus       165 ~~~~~~~~~~~Li~~sl~~~~~----~~~~~mhdl~~dla~~i~~-----~e~~~~~~~--~------------~~l-~~  220 (526)
                      +       +.+|++++|++...    ...|+|||+|||+|.++++     ++.......  .            ++. +.
T Consensus       459 ~-------i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~  531 (889)
T KOG4658|consen  459 Y-------IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM  531 (889)
T ss_pred             H-------HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence            5       99999999999764    2689999999999999998     443221111  0            000 01


Q ss_pred             hhhHHHH---hhcCcceEEEeccCCC-CCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC
Q 038130          221 HKDIYEV---LIVNTLVILNLSEYVS-LNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP  294 (526)
Q Consensus       221 ~~~~~~~---~~~~~l~~L~l~~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp  294 (526)
                      ..++.+.   .....+++|-+.++.. +..++ ..|..++.|++|||++|..+..+|. ++++.+||||+++++.+..+|
T Consensus       532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP  611 (889)
T KOG4658|consen  532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP  611 (889)
T ss_pred             ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence            1111111   1223466777766542 33343 3466788888888888877788886 777888888888888888888


Q ss_pred             ccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC--CCcCCCcccCcccccceeeccccccccccChhhhc
Q 038130          295 SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN--LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG  372 (526)
Q Consensus       295 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~  372 (526)
                      .++++|+.|.+|++..+.....+|..+..|.+|++|.+.....  ....-..+.+|.+|+ .+.......  .+...+..
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~--~~~e~l~~  688 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV--LLLEDLLG  688 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh--HhHhhhhh
Confidence            8888888888888887766666666555688888888765320  111112233444444 333322211  11112222


Q ss_pred             ccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh-ccCCCCEecccC
Q 038130          373 SNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII-QLSRLVVLNLNY  451 (526)
Q Consensus       373 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~-~l~~L~~L~L~~  451 (526)
                      . +.|.++...-...+|..    .....++..+ .+|+.|.+.+|.+.+....    ..+..  ... .++++..+.+.+
T Consensus       689 ~-~~L~~~~~~l~~~~~~~----~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~----~~~~~--~~~~~f~~l~~~~~~~  756 (889)
T KOG4658|consen  689 M-TRLRSLLQSLSIEGCSK----RTLISSLGSL-GNLEELSILDCGISEIVIE----WEESL--IVLLCFPNLSKVSILN  756 (889)
T ss_pred             h-HHHHHHhHhhhhccccc----ceeecccccc-cCcceEEEEcCCCchhhcc----ccccc--chhhhHHHHHHHHhhc
Confidence            2 33333322111011111    1111112233 3888888888876552210    00000  011 256677777777


Q ss_pred             CccCCcCCC--ccccccccccccccccccCC
Q 038130          452 CERLQSLPK--LPFNLQGIFAHHCTALSSIS  480 (526)
Q Consensus       452 ~~~l~~lp~--~~~~L~~L~l~~c~~L~~l~  480 (526)
                      |...+.+..  .+|+|+.|.+..|..++.+.
T Consensus       757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccccccchhhccCcccEEEEecccccccCC
Confidence            776666653  47788888888887777654

>PLN03210 Resistant to P

Probab=100.00  E-value=5.2e-33  Score=314.73  Aligned_cols=453  Identities=21%  Similarity=0.261  Sum_probs=283.0

Q ss_pred             CCCcEEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHH
Q 038130           12 NRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIV   91 (526)
Q Consensus        12 ~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~   91 (526)
                      +.|.| -..+.+|||++|..+||+   + ..   ..+++   ++++++||++|+|+|||++++|++++.+ +..+|++++
T Consensus       344 ~~~~v-~~l~~~ea~~LF~~~Af~---~-~~---~~~~~---~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l  411 (1153)
T PLN03210        344 HIYEV-CLPSNELALEMFCRSAFK---K-NS---PPDGF---MELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML  411 (1153)
T ss_pred             eEEEe-cCCCHHHHHHHHHHHhcC---C-CC---CcHHH---HHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence            34444 123567899999999986   1 11   01133   8899999999999999999999999876 679999999


Q ss_pred             HHHhhC----CCeEEEEEeeccchh-hhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHhhCC
Q 038130           92 ECRTNY----GQIVVAVCYRVEPSH-VRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACG  166 (526)
Q Consensus        92 ~~~~~~----~~~il~~sY~~Lp~~-lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~~~~  166 (526)
                      +.....    ...++.+||+.|+++ .| .||+++++|+.+..+         ..|..|+|++...... .+....+. .
T Consensus       412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k-~~Fl~ia~ff~~~~~---------~~v~~~l~~~~~~~~~-~l~~L~~k-s  479 (1153)
T PLN03210        412 PRLRNGLDGKIEKTLRVSYDGLNNKKDK-AIFRHIACLFNGEKV---------NDIKLLLANSDLDVNI-GLKNLVDK-S  479 (1153)
T ss_pred             HHHHhCccHHHHHHHHHhhhccCccchh-hhhheehhhcCCCCH---------HHHHHHHHhcCCCchh-ChHHHHhc-C
Confidence            887532    223677799999886 66 899999999887655         3345555553221100 01111110 0


Q ss_pred             CC----cccchHHHhh---ccce-----eeecCCeEEechhHHHHHHHHHH--------------------hhccC----
Q 038130          167 FF----AGIGLPVLVN---RCLI-----TVSHSNTITMHDSLGDMEREIVQ--------------------KESIN----  210 (526)
Q Consensus       167 ~~----~~~~~~~Li~---~sl~-----~~~~~~~~~mhdl~~dla~~i~~--------------------~e~~~----  210 (526)
                      ..    ....+..|+.   |..+     ...+......+.-+.++.....+                    .+.|.    
T Consensus       480 Li~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~  559 (1153)
T PLN03210        480 LIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN  559 (1153)
T ss_pred             CEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence            00    0000111110   0000     00000000000001111000000                    00000    


Q ss_pred             -----C-CC-----CCCCCCChhhHHH--------------------HhhcCcceEEEeccCCCCCCCChhccccCCCcE
Q 038130          211 -----Y-PG-----ECSPLWHHKDIYE--------------------VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKK  259 (526)
Q Consensus       211 -----~-~~-----~~~~l~~~~~~~~--------------------~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~  259 (526)
                           . ..     .......+.+...                    .....+++.|++.++ .+..+|..+..+++|+.
T Consensus       560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~  638 (1153)
T PLN03210        560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRN  638 (1153)
T ss_pred             ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-cccccccccccCCCCCE
Confidence                 0 00     0000000011100                    112346677787774 46677877888999999


Q ss_pred             EeeCCCCCCCcCCCCCCCCcccEEEeccc-CCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCC
Q 038130          260 LNLLGCSKLKRLPEFSSSGKIEEIWLDGT-AIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNL  338 (526)
Q Consensus       260 L~l~~~~~~~~lp~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~  338 (526)
                      |++++|..++.+|.+..+++|+.|+++++ .+..+|.+++++++|++|++++|..++.+|..+ ++++|++|++++|..+
T Consensus       639 L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        639 IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             EECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc
Confidence            99999888888999999999999999854 567899999999999999999998888899866 7889999999888766


Q ss_pred             CcCCCcccCc--------------------------------------------------ccccceeeccccccccccCh
Q 038130          339 QRLPDDFGNL--------------------------------------------------EASNSTLYAKGTAAKREVPS  368 (526)
Q Consensus       339 ~~lp~~~~~l--------------------------------------------------~~L~~~L~l~~~~~~~~~~~  368 (526)
                      ..+|....++                                                  ++|+ .|++++|.....+|.
T Consensus       718 ~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~-~L~Ls~n~~l~~lP~  796 (1153)
T PLN03210        718 KSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT-RLFLSDIPSLVELPS  796 (1153)
T ss_pred             cccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch-heeCCCCCCccccCh
Confidence            5555322111                                                  2344 455555544455666


Q ss_pred             hhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCC-CCCCCc--------cCCCCcccccHHHh
Q 038130          369 SIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGI-LELPDS--------LEKNNFERIPESII  439 (526)
Q Consensus       369 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~lp~~--------l~~~~l~~lp~~l~  439 (526)
                      .+..+ ++|+.|++    .+|..+...+..   . . +++|+.|++++|.. ..+|..        +++|.++.+|.++.
T Consensus       797 si~~L-~~L~~L~L----s~C~~L~~LP~~---~-~-L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~  866 (1153)
T PLN03210        797 SIQNL-HKLEHLEI----ENCINLETLPTG---I-N-LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE  866 (1153)
T ss_pred             hhhCC-CCCCEEEC----CCCCCcCeeCCC---C-C-ccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh
Confidence            66555 77777777    555443332211   1 2 34888888888743 334432        77888999999999


Q ss_pred             ccCCCCEecccCCccCCcCCCc---cccccccccccccccccCCC-----------------CCCCCEEeccCCCCCCHH
Q 038130          440 QLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSISY-----------------KSSTQLFDLSDNFKLDRN  499 (526)
Q Consensus       440 ~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~~-----------------~~~L~~L~l~~c~~l~~~  499 (526)
                      .+++|+.|++++|+.++.+|..   +++|+.+++.+|.+|+.++.                 +|....+.+.+|.++...
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~  946 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE  946 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence            9999999999999999998864   45677788999998876542                 233455678889888876


Q ss_pred             HH
Q 038130          500 AV  501 (526)
Q Consensus       500 ~~  501 (526)
                      +.
T Consensus       947 a~  948 (1153)
T PLN03210        947 AL  948 (1153)
T ss_pred             hh
Confidence            63

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.3e-21  Score=221.52  Aligned_cols=150  Identities=26%  Similarity=0.395  Sum_probs=90.4

Q ss_pred             cCcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCc-ccCccccCCCCCCEEe
Q 038130          230 VNTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLY  307 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~  307 (526)
                      .+.+++|++++|.....+|..+. .+++|++|++++|.....+|. ..+++|++|++++|.+. .+|..++++++|++|+
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            35666666666555455665443 566666666666654444443 34556666666666665 5566666666666666


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      +++|.+.+.+|..++++++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|++|++
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l-~~L~~L~L  243 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIGGL-TSLNHLDL  243 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCCcCChhHhcC-CCCCEEEC
Confidence            666655556666666666666666666655555666666666666 66666666655556555555 66666666

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=3.2e-21  Score=218.38  Aligned_cols=258  Identities=22%  Similarity=0.298  Sum_probs=117.9

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~  309 (526)
                      .+++|++++|.....+|..++++++|++|++++|.....+|. +..+.+|++|++++|.+. .+|..++++++|++|+++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            344444444333334444444444444444444433333332 444444444444444443 334444444444444444


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC---
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW---  386 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---  386 (526)
                      +|.+.+.+|..++++++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|.   
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG  298 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC-EEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc
Confidence            4444444444444444444444444443334444444444444 44444444433444444333 444444442220   


Q ss_pred             -----------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCC-CCCc-----------cCCCCcc-cccH
Q 038130          387 -----------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE-LPDS-----------LEKNNFE-RIPE  436 (526)
Q Consensus       387 -----------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~-----------l~~~~l~-~lp~  436 (526)
                                       .++..   .+..+..+..++ +|+.|++++|.+++ +|..           +++|.++ .+|.
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNF---TGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCcc---CCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence                             11111   001111122222 56666666665543 3322           3444443 3455


Q ss_pred             HHhccCCCCEecccCCccCCcCCCc---cccccccccccccccccC----CCCCCCCEEeccCCCC
Q 038130          437 SIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI----SYKSSTQLFDLSDNFK  495 (526)
Q Consensus       437 ~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l----~~~~~L~~L~l~~c~~  495 (526)
                      ++..+++|+.|++++|...+.+|..   .++|+.|++++|.-...+    ..+++|+.|++++|.-
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  440 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL  440 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence            5555555666666655554455532   456677777666543333    2477888888887753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=9.5e-22  Score=193.97  Aligned_cols=260  Identities=25%  Similarity=0.306  Sum_probs=205.0

Q ss_pred             ChhhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCccc
Q 038130          220 HHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSI  297 (526)
Q Consensus       220 ~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~i  297 (526)
                      ++.++.+   ...+.+||++. +.++..|..+..-+++-+|+||+|+ +..+|.  +.++..|-+|||++|.+..+|+.+
T Consensus        95 iP~diF~---l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~  169 (1255)
T KOG0444|consen   95 IPTDIFR---LKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQI  169 (1255)
T ss_pred             CCchhcc---cccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence            3444443   36789999999 6789999999999999999999964 788886  789999999999999999999999


Q ss_pred             cCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC-CCcCCCcccCcccccceeeccccccccccChhhhcccCC
Q 038130          298 GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN-LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNN  376 (526)
Q Consensus       298 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~  376 (526)
                      .+|.+|++|+|++|.+...--..+-.+++|++|.+++.+. +..+|..+..|.+|+ .++++.|++ ..+|..+..+ .+
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~-dvDlS~N~L-p~vPecly~l-~~  246 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR-DVDLSENNL-PIVPECLYKL-RN  246 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh-hccccccCC-CcchHHHhhh-hh
Confidence            9999999999999975432222234578889999987443 456899999999999 999999999 8899999888 99


Q ss_pred             cceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCc--ccccHHHhccCC
Q 038130          377 LYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNF--ERIPESIIQLSR  443 (526)
Q Consensus       377 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l--~~lp~~l~~l~~  443 (526)
                      |+.|+++.|    .........     +...+|++|+++.|+++.+|+.           +.+|.+  ..+|+.++.+.+
T Consensus       247 LrrLNLS~N----~iteL~~~~-----~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  247 LRRLNLSGN----KITELNMTE-----GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             hheeccCcC----ceeeeeccH-----HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            999999544    322222111     1223899999999999988876           455554  478999999999


Q ss_pred             CCEecccCCccCCcCCCcc---ccccccccccccccccCC----CCCCCCEEeccCCCCCCH
Q 038130          444 LVVLNLNYCERLQSLPKLP---FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDR  498 (526)
Q Consensus       444 L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~  498 (526)
                      |+.+...+| .++-+|+.+   +.|+.|.+. |..|-.+|    .++.|+.||+..||+|.-
T Consensus       318 Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  318 LEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             hHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccC
Confidence            999988876 788888753   468888775 44555555    589999999999998864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-18  Score=168.74  Aligned_cols=251  Identities=23%  Similarity=0.206  Sum_probs=186.2

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEE
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYL  306 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L  306 (526)
                      ..+|+||++.| .+..+| ..+..-.+++.|+|++|. ++.+.  .|.++.+|-.|.|+.|.|+.+|.. |.+|++|+.|
T Consensus       149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            46789999985 444444 345555789999999976 44443  488888999999999999999864 6779999999


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccCh-hhhcccCCcceEEcccC
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPS-SIVGSNNNLYELSLDRS  385 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~-~l~~~~~~L~~L~l~~~  385 (526)
                      +|.+|.+...--..+..|++|+.|.+..|.....-...|..|..++ +|++..|++ ..+.. +++++ +.|+.|+++.|
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme-~l~L~~N~l-~~vn~g~lfgL-t~L~~L~lS~N  303 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME-HLNLETNRL-QAVNEGWLFGL-TSLEQLDLSYN  303 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc-eeecccchh-hhhhccccccc-chhhhhccchh
Confidence            9999874332234578899999999998654433334577888888 999999999 55544 55666 99999999766


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HHhccCCCCEecccCC
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SIIQLSRLVVLNLNYC  452 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l~~l~~L~~L~L~~~  452 (526)
                      ...        .+...-..++++|+.|+|++|+++++|..            ++.|+++.+.+ .+..+++|++|+|++|
T Consensus       304 aI~--------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  304 AIQ--------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hhh--------eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            211        11111224556999999999999998876            78888887764 4667899999999998


Q ss_pred             ccCCcCC------CccccccccccccccccccCC-----CCCCCCEEeccCCCC
Q 038130          453 ERLQSLP------KLPFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDNFK  495 (526)
Q Consensus       453 ~~l~~lp------~~~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c~~  495 (526)
                      ..-..+-      ..+++|+.|.+.+. +++.++     .++.|++|++.+|+.
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence            6444333      23678888888764 445554     588999999998864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=7.3e-19  Score=173.81  Aligned_cols=262  Identities=19%  Similarity=0.228  Sum_probs=146.5

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCC-cCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLK-RLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      +++.|.++.| .+.++...+..++.||.+++..|+.-. .+| ++..+..|..|||+.|++.++|..+.+-+++-.|+|+
T Consensus        56 kLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   56 KLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS  134 (1255)
T ss_pred             hhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc
Confidence            4555555553 333444445556666666666543221 244 3666666677777777777777766666677777777


Q ss_pred             CCccCcccCcCC-CCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130          310 DCKRLKSLPSSL-SQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG  388 (526)
Q Consensus       310 ~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  388 (526)
                      +|. +..+|..+ .+|+.|-.|++++ +.++.+|+.+..|..|+ .|.+++|.+...-...+..+ ++|+.|.+++....
T Consensus       135 ~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lq-tL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  135 YNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQ-TLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRT  210 (1255)
T ss_pred             cCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhh-hhhcCCChhhHHHHhcCccc-hhhhhhhcccccch
Confidence            665 44555543 4566666677766 45666666677777777 77777665421111111112 44444444322110


Q ss_pred             CCCCCC-----------------CCCcccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCcccccHHHhc
Q 038130          389 DKQMGL-----------------SSPITLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERIPESIIQ  440 (526)
Q Consensus       389 ~~~~~~-----------------~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l~~  440 (526)
                      -.++..                 .+..+.-+..+. +|+.|+|++|.++++...           ++.|+++.+|..+..
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK  289 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK  289 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence            000000                 000000022222 667777777776664332           677778888888888


Q ss_pred             cCCCCEecccCCc-cCCcCCCccc---cccccccccccccccCC----CCCCCCEEeccCCCCCCHHH
Q 038130          441 LSRLVVLNLNYCE-RLQSLPKLPF---NLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNA  500 (526)
Q Consensus       441 l~~L~~L~L~~~~-~l~~lp~~~~---~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~  500 (526)
                      ++.|+.|.+.+|+ ..+.+|....   +|+.+...+ ..|+.+|    .|+.|+.|.++.|.-++-..
T Consensus       290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechh
Confidence            8888888777775 3455665443   344444332 3444444    58899999999887766443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=2.9e-18  Score=161.49  Aligned_cols=113  Identities=36%  Similarity=0.513  Sum_probs=54.0

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcccc-CCCCCCEEeccC
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIG-CLSRLLYLYLSD  310 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~  310 (526)
                      .++.||... +.++.+|..++.+.+|..|++..| .+..+|.|.++..|..|.++.|.|+.+|..++ .|.+|.+||+..
T Consensus       184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             HHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence            445555544 345555555555555555555553 24445555555444444444444444444433 444444444444


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCc
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNL  348 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l  348 (526)
                      |+ +++.|.+++.+.+|..||+++ +.+..+|..+++|
T Consensus       262 Nk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl  297 (565)
T KOG0472|consen  262 NK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL  297 (565)
T ss_pred             cc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc
Confidence            33 344444444444444444444 2233344444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-16  Score=156.40  Aligned_cols=247  Identities=23%  Similarity=0.281  Sum_probs=171.8

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCC-cccEEEecccCCcccC-ccccCCCCCCEEeccC
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSG-KIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSD  310 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~-~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~  310 (526)
                      .+.|++++|.....-+..|.++++|+.+.+..| .++.+|.++... +++.|+|.+|.|.++. +.+..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            467999996655555677889999999999885 588899876554 4899999999998764 3578889999999999


Q ss_pred             CccCcccCc-CCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          311 CKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       311 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      |. +..+|. ++..-.++++|++++|.....-...|..+.+|. .|.++.|.+ ..+|...++.+++|+.|++..|    
T Consensus       159 N~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~-tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN----  231 (873)
T KOG4194|consen  159 NL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL-TLKLSRNRI-TTLPQRSFKRLPKLESLDLNRN----  231 (873)
T ss_pred             ch-hhcccCCCCCCCCCceEEeeccccccccccccccccchhe-eeecccCcc-cccCHHHhhhcchhhhhhcccc----
Confidence            86 444543 455667899999999765444445688888888 999999999 8888887775599999999544    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCccccc-HHHhccCCCCEecccCCccCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIP-ESIIQLSRLVVLNLNYCERLQ  456 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~  456 (526)
                      .   ......+.+.++. +|+.|.+..|.+..+.+.            ++.|+++.+. .|+-+|+.|+.|++++|. +.
T Consensus       232 ~---irive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~  306 (873)
T KOG4194|consen  232 R---IRIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQ  306 (873)
T ss_pred             c---eeeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hh
Confidence            1   1111122255555 888888888877765544            4555665554 466777777778777773 22


Q ss_pred             cCC----CccccccccccccccccccCC-----CCCCCCEEeccCC
Q 038130          457 SLP----KLPFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDN  493 (526)
Q Consensus       457 ~lp----~~~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c  493 (526)
                      .+.    .+-++|+.|++++.. +..++     .+.+|++|+++.|
T Consensus       307 rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  307 RIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc
Confidence            222    124566666665432 22222     2566666666666

>PLN03194 putative disease resistance protein; Provisional

Probab=99.65  E-value=1.4e-15  Score=130.90  Aligned_cols=107  Identities=29%  Similarity=0.506  Sum_probs=98.4

Q ss_pred             CCCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhc
Q 038130            6 SLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWC   83 (526)
Q Consensus         6 ~~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~   83 (526)
                      |+++-..+|||||||+|+|..+.|..+++.+|..+|+.+|.|+ ++++|+.|...|.+..+++.++ ++++..+..+.|+
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            3445577899999999999999999999999999999999999 8999999999999999999999 7778889999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEEeeccchhhhhc
Q 038130           84 LDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQ  116 (526)
Q Consensus        84 ~~~w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~  116 (526)
                      .+||..|.++.    ..|+|+.|+.-|+++|+|
T Consensus        99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q  127 (187)
T PLN03194         99 LHELALIMESK----KRVIPIFCDVKPSQLRVV  127 (187)
T ss_pred             HHHHHHHHHcC----CEEEEEEecCCHHHhhcc
Confidence            99999999863    369999999999999985

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=5.4e-18  Score=159.71  Aligned_cols=245  Identities=26%  Similarity=0.369  Sum_probs=180.7

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK  312 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~  312 (526)
                      +..+.++.| .+..+.+.+.++..|.+|++.+|......|.++.+..++.|+.+.|.+..+|+.++.+..|+.|++++|.
T Consensus        47 l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence            345556663 3444445577788888888888665544556888888888888888888888888888888888888876


Q ss_pred             cCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCC
Q 038130          313 RLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQM  392 (526)
Q Consensus       313 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  392 (526)
                       ...+|++++.+..|..|+..+ +....+|+++.++.++. .+++.+|++ ..+|+....+ +.|++|+.-.|       
T Consensus       126 -~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~-~l~~~~n~l-~~l~~~~i~m-~~L~~ld~~~N-------  193 (565)
T KOG0472|consen  126 -LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLS-KLDLEGNKL-KALPENHIAM-KRLKHLDCNSN-------  193 (565)
T ss_pred             -eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHH-Hhhccccch-hhCCHHHHHH-HHHHhcccchh-------
Confidence             566777788888888888776 45677788888888888 888888888 6677766665 88888777322       


Q ss_pred             CCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHh-ccCCCCEecccCCccCCcCCC-
Q 038130          393 GLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESII-QLSRLVVLNLNYCERLQSLPK-  460 (526)
Q Consensus       393 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~-  460 (526)
                       .....+..++++- +|..|++..|++..+|..          ++.|.++.+|.... ++++|..|++++| .++++|. 
T Consensus       194 -~L~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde  270 (565)
T KOG0472|consen  194 -LLETLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE  270 (565)
T ss_pred             -hhhcCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH
Confidence             2222333344444 888888888888877754          67788888997766 8999999999998 7888996 


Q ss_pred             --ccccccccccccccccccC----CCCCCCCEEeccCCCC
Q 038130          461 --LPFNLQGIFAHHCTALSSI----SYKSSTQLFDLSDNFK  495 (526)
Q Consensus       461 --~~~~L~~L~l~~c~~L~~l----~~~~~L~~L~l~~c~~  495 (526)
                        .+.+|+.|++++.. +..+    +++ .|+.|-+.|||-
T Consensus       271 ~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence              36678899998743 3333    356 889999999984

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=1.6e-14  Score=153.65  Aligned_cols=227  Identities=24%  Similarity=0.287  Sum_probs=119.2

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK  312 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~  312 (526)
                      -..|+++++ .+..+|..+.  ++|+.|.+.+|. ++.+|..  .++|++|++++|.++.+|..   .++|+.|++++|.
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            345666663 4455665443  356666666543 4445542  35566666666666655532   2344555555543


Q ss_pred             cCcccCcCCC-----------------CCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccC
Q 038130          313 RLKSLPSSLS-----------------QLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN  375 (526)
Q Consensus       313 ~~~~lp~~i~-----------------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~  375 (526)
                       +..+|....                 .+++|+.|++++| .+..+|....   .|+ .|++++|.+ ..+|.    .+.
T Consensus       274 -L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~---~L~-~L~Ls~N~L-~~LP~----lp~  342 (788)
T PRK15387        274 -LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPALPS---ELC-KLWAYNNQL-TSLPT----LPS  342 (788)
T ss_pred             -hhhhhhchhhcCEEECcCCccccccccccccceeECCCC-ccccCCCCcc---ccc-ccccccCcc-ccccc----ccc
Confidence             223332110                 1244555555553 2333333221   233 444555555 33442    114


Q ss_pred             CcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEe
Q 038130          376 NLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVL  447 (526)
Q Consensus       376 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L  447 (526)
                      +|+.|+++.|    .. ...+       ..+++|+.|++++|.++.+|..        +++|.++.+|..   .++|+.|
T Consensus       343 ~Lq~LdLS~N----~L-s~LP-------~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~L  407 (788)
T PRK15387        343 GLQELSVSDN----QL-ASLP-------TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKEL  407 (788)
T ss_pred             ccceEecCCC----cc-CCCC-------CCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEE
Confidence            5566666332    11 0000       1123555566666655555533        455666666532   3567778


Q ss_pred             cccCCccCCcCCCccccccccccccccccccCC----CCCCCCEEeccCCCCC
Q 038130          448 NLNYCERLQSLPKLPFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKL  496 (526)
Q Consensus       448 ~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l  496 (526)
                      ++++| .+..+|..+.+|+.|+++++. ++.+|    .+++|+.|++++|+--
T Consensus       408 dLS~N-~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        408 MVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             EccCC-cCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence            88877 466677777778888887643 45565    4889999999999743

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=5.2e-17  Score=136.02  Aligned_cols=165  Identities=27%  Similarity=0.390  Sum_probs=125.1

Q ss_pred             CCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCC
Q 038130          246 SLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLK  325 (526)
Q Consensus       246 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~  325 (526)
                      .+|. +.++.+...|-+++|......|.+..+.+|++|++.+|+|+++|.+++.|++|+.|+++-|+ +..+|.+++.++
T Consensus        25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP  102 (264)
T ss_pred             hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence            3444 44477778888888764444556888888999999999999999999999999999998776 667899999999


Q ss_pred             CCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCccc
Q 038130          326 SLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG  404 (526)
Q Consensus       326 ~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  404 (526)
                      -|+.|++.+|+..+ .+|..|-.|+.|+ .|.+++|.+ ..+|..++.+ ++|+.|.+..|                   
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlr-alyl~dndf-e~lp~dvg~l-t~lqil~lrdn-------------------  160 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLR-ALYLGDNDF-EILPPDVGKL-TNLQILSLRDN-------------------  160 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHH-HHHhcCCCc-ccCChhhhhh-cceeEEeeccC-------------------
Confidence            99999998866543 4788888888888 889999988 8888888777 77777666222                   


Q ss_pred             ccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130          405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       405 ~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                                               .+-++|..++.++.|++|.+.+| .+..+|+
T Consensus       161 -------------------------dll~lpkeig~lt~lrelhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  161 -------------------------DLLSLPKEIGDLTRLRELHIQGN-RLTVLPP  190 (264)
T ss_pred             -------------------------chhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence                                     23345667777777777777776 4555553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.58  E-value=1.5e-14  Score=154.62  Aligned_cols=230  Identities=23%  Similarity=0.338  Sum_probs=130.8

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCC
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~  311 (526)
                      ...|++++ ..+..+|..+.  +.|+.|++++|. ++.+|. +.  .+|++|++++|.++.+|..+.  .+|+.|+|++|
T Consensus       180 ~~~L~L~~-~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        180 KTELRLKI-LGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             ceEEEeCC-CCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            45566665 34555555432  456666666643 444553 22  356666666666666665443  35666666665


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ  391 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  391 (526)
                      . +..+|..+.  .+|+.|++++| .+..+|..+.  .+|+ .|++++|.+ ..+|..+.   ++|+.|+++.|    ..
T Consensus       252 ~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~-~L~Ls~N~L-t~LP~~lp---~sL~~L~Ls~N----~L  316 (754)
T PRK15370        252 R-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELR-YLSVYDNSI-RTLPAHLP---SGITHLNVQSN----SL  316 (754)
T ss_pred             c-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCc-EEECCCCcc-ccCcccch---hhHHHHHhcCC----cc
Confidence            5 335555442  35666666653 3345555443  2455 666666666 44554331   34555555322    11


Q ss_pred             CCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCC-c
Q 038130          392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK-L  461 (526)
Q Consensus       392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~  461 (526)
                      .. .+   .   ..+++|+.|++++|.++++|..         +++|.++.+|..+  .++|+.|+|++| .+..+|. +
T Consensus       317 t~-LP---~---~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l  386 (754)
T PRK15370        317 TA-LP---E---TLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENL  386 (754)
T ss_pred             cc-CC---c---cccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhH
Confidence            10 00   0   1113566666666655555532         4555666667655  368999999998 5667775 4


Q ss_pred             cccccccccccccccccCC--------CCCCCCEEeccCCCCC
Q 038130          462 PFNLQGIFAHHCTALSSIS--------YKSSTQLFDLSDNFKL  496 (526)
Q Consensus       462 ~~~L~~L~l~~c~~L~~l~--------~~~~L~~L~l~~c~~l  496 (526)
                      +.+|+.|+++++. +..++        .++++..|++.+||--
T Consensus       387 ~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            5679999998853 45554        2578899999999854

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.54  E-value=5.7e-16  Score=160.28  Aligned_cols=227  Identities=24%  Similarity=0.312  Sum_probs=144.9

Q ss_pred             CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          255 EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      ++|+.|..++|... .+-.-..-.+|++++++.+++..+|+.++.+.+|+.+++..|. +..+|..+....+|+.|.+..
T Consensus       219 ~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcce-eeccccccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence            44555555555433 2111223344566666666666666666666666666666654 355665566666666666655


Q ss_pred             CCCCCcCCCcccCcccccceeeccccccccccChhhhc-------------------------ccCCcceEEcccCCCCC
Q 038130          335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG-------------------------SNNNLYELSLDRSWGGD  389 (526)
Q Consensus       335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~-------------------------~~~~L~~L~l~~~~~~~  389 (526)
                      | .+..+|...++++.|+ +|++..|++ ..+|..++.                         .++.|+.|.+.+|    
T Consensus       297 n-el~yip~~le~~~sL~-tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN----  369 (1081)
T KOG0618|consen  297 N-ELEYIPPFLEGLKSLR-TLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN----  369 (1081)
T ss_pred             h-hhhhCCCcccccceee-eeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC----
Confidence            3 4455555555566666 666666665 555543322                         1233444444333    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPESIIQLSRLVVLNLNYCERLQS  457 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~  457 (526)
                         .........+.++. +|+.|+|++|++.++|+.            ++||.++.+|..+..++.|++|...+| .+..
T Consensus       370 ---~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~  444 (1081)
T KOG0618|consen  370 ---HLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLS  444 (1081)
T ss_pred             ---cccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence               11111222244555 999999999999999987            899999999999999999999998887 7788


Q ss_pred             CCCc--cccccccccccccccccCC----CC-CCCCEEeccCCCCC
Q 038130          458 LPKL--PFNLQGIFAHHCTALSSIS----YK-SSTQLFDLSDNFKL  496 (526)
Q Consensus       458 lp~~--~~~L~~L~l~~c~~L~~l~----~~-~~L~~L~l~~c~~l  496 (526)
                      +|++  ++.|+.++++ |..|..+.    .. |+|++||++||+.+
T Consensus       445 fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  445 FPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             chhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence            8874  6789999987 45555433    12 79999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=8.6e-17  Score=134.70  Aligned_cols=161  Identities=24%  Similarity=0.346  Sum_probs=139.9

Q ss_pred             CCChhhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCcc
Q 038130          218 LWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSS  296 (526)
Q Consensus       218 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~  296 (526)
                      ++...++.+++.....+.|.++. +.+..+|+.+..+.+|++|++++|. ++.+| .++.+++|+.|+++-|.+..+|..
T Consensus        20 iSsf~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   20 ISSFEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             cccHhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccc
Confidence            44555666666667778889998 5778889889999999999999864 67777 599999999999999999999999


Q ss_pred             ccCCCCCCEEeccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccC
Q 038130          297 IGCLSRLLYLYLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN  375 (526)
Q Consensus       297 i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~  375 (526)
                      ||.++.|+.|||.+|.... .+|..+..++.|+.|++++ +..+.+|..++++++|+ .|.+.+|.+ -.+|..++.+ +
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lq-il~lrdndl-l~lpkeig~l-t  173 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQ-ILSLRDNDL-LSLPKEIGDL-T  173 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhccee-EEeeccCch-hhCcHHHHHH-H
Confidence            9999999999999987654 6899899999999999999 46788999999999999 999999999 8899999888 8


Q ss_pred             CcceEEccc
Q 038130          376 NLYELSLDR  384 (526)
Q Consensus       376 ~L~~L~l~~  384 (526)
                      .|++|.+..
T Consensus       174 ~lrelhiqg  182 (264)
T KOG0617|consen  174 RLRELHIQG  182 (264)
T ss_pred             HHHHHhccc
Confidence            888888843

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=3.3e-13  Score=144.55  Aligned_cols=197  Identities=24%  Similarity=0.378  Sum_probs=114.5

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..++.|++++| .+..+|..+.  .+|++|++++|. ++.+|. +.  .+|+.|+|++|.+..+|..+.  .+|++|+++
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence            35778888874 5667776553  578888888764 555664 22  357888888888887777664  478888888


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|. +..+|..+.  .+|+.|++++|. +..+|..+.  .+|+ .|++++|.+ ..+|..+.   ++|+.|.+..|    
T Consensus       271 ~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~-~L~Ls~N~L-t~LP~~l~---~sL~~L~Ls~N----  335 (754)
T PRK15370        271 HNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGIT-HLNVQSNSL-TALPETLP---PGLKTLEAGEN----  335 (754)
T ss_pred             CCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHH-HHHhcCCcc-ccCCcccc---ccceeccccCC----
Confidence            765 445776553  478888887753 445665432  2455 666666666 44554332   45666666332    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                      .......       .++++|+.|++++|.++.+|..         +++|.++.+|..+.  .+|+.|++++| .+..+|.
T Consensus       336 ~Lt~LP~-------~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~  405 (754)
T PRK15370        336 ALTSLPA-------SLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLPE  405 (754)
T ss_pred             ccccCCh-------hhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCch
Confidence            1111100       1123555666666655544432         45555555555443  24555666655 3344443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=7.1e-13  Score=141.21  Aligned_cols=155  Identities=25%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCC-----------------CCCCcEEeecCCCCCCcC
Q 038130          279 KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQ-----------------LKSLKLLNLHGCSNLQRL  341 (526)
Q Consensus       279 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-----------------l~~L~~L~l~~~~~~~~l  341 (526)
                      +|+.|++++|.++.+|..   +++|++|++++|.+. .+|.....                 ..+|++|++++| .+..+
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~L  357 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASL  357 (788)
T ss_pred             hcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCC-ccCCC
Confidence            345555555555555542   356777777776533 34431111                 124556666553 33444


Q ss_pred             CCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCC
Q 038130          342 PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE  421 (526)
Q Consensus       342 p~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  421 (526)
                      |....   +|. .|++++|.+ ..+|..    +.+|+.|+++.|    .. ...+       ..+++|+.|++++|.+++
T Consensus       358 P~lp~---~L~-~L~Ls~N~L-~~LP~l----~~~L~~LdLs~N----~L-t~LP-------~l~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        358 PTLPS---ELY-KLWAYNNRL-TSLPAL----PSGLKELIVSGN----RL-TSLP-------VLPSELKELMVSGNRLTS  416 (788)
T ss_pred             CCCCc---ccc-eehhhcccc-ccCccc----ccccceEEecCC----cc-cCCC-------CcccCCCEEEccCCcCCC
Confidence            44322   334 555666655 345532    256777777433    11 1111       122478888888888888


Q ss_pred             CCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          422 LPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       422 lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      +|..        +++|.++.+|..+..+++|+.|+|++|+.-+..|
T Consensus       417 IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        417 LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence            7764        6788888888888888888888888887555443

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.43  E-value=1.2e-16  Score=155.33  Aligned_cols=120  Identities=15%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhCC
Q 038130           19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYG   98 (526)
Q Consensus        19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~~   98 (526)
                      .++.+|+|++|.+.++.   ..   ...++.+   ++++++|+++|+|+|||++++|++++.+.+.++|.++++......
T Consensus       156 ~L~~~ea~~L~~~~~~~---~~---~~~~~~~---~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~  226 (287)
T PF00931_consen  156 PLSEEEALELFKKRAGR---KE---SESPEDL---EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL  226 (287)
T ss_dssp             S--HHHHHHHHHHHHTS---HS-------TTS---CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred             ccccccccccccccccc---cc---ccccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45777899999998765   11   1112234   899999999999999999999999977778889999997762221


Q ss_pred             -------Ce---EEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccch
Q 038130           99 -------QI---VVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEER  154 (526)
Q Consensus        99 -------~~---il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~  154 (526)
                             ..   ++..||+.||.++| .||.||++||+++.|      +++.+|.+|+||||+...
T Consensus       227 ~~~~~~~~~~~~~l~~s~~~L~~~~~-~~f~~L~~f~~~~~i------~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  227 RESRDYDRSVFSALELSYDSLPDELR-RCFLYLSIFPEGVPI------PRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             TCSSGSCHHHHHHHHHHHHSSHTCCH-HHHHHGGGSGTTS-E------EHHHHHHHHTT-HHTC--
T ss_pred             cccccccccccccceechhcCCccHH-HHHhhCcCCCCCceE------CHHHHHHHHHHCCCCccc
Confidence                   11   34449999999999 799999999999999      888999999999998653

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.36  E-value=3e-14  Score=147.76  Aligned_cols=247  Identities=27%  Similarity=0.296  Sum_probs=166.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      .++.+++++. +.+..+|+++..+.+|+.|+..+|. +..+|. +....+|++|++..|.++.+|...+.++.|++|+|.
T Consensus       241 ~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISH-NNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecch-hhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            4567777777 4556677777777778877777754 355553 777777777777777777777777777778888887


Q ss_pred             CCccCcccCcCCC-CCC-CCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130          310 DCKRLKSLPSSLS-QLK-SLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW  386 (526)
Q Consensus       310 ~~~~~~~lp~~i~-~l~-~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  386 (526)
                      .|. +..+|+.+- .+. .|+.|+.+. +.+..+|. +=..+..|+ .|.+.+|.++...-+.+.+. .+|+.|+++.|.
T Consensus       319 ~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq-~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  319 SNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQ-ELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNR  394 (1081)
T ss_pred             hcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHH-HHHHhcCcccccchhhhccc-cceeeeeecccc
Confidence            765 555665321 122 245555554 33444442 122345677 88899998877776666666 999999996651


Q ss_pred             CCCCCCCCCCCcccC-cccccCcccEEEccCCCCCCCCCc-----------cCCCCcccccHHHhccCCCCEecccCCcc
Q 038130          387 GGDKQMGLSSPITLP-LDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~  454 (526)
                      .       . ..+.. +.++. .|+.|+||||+++.+|+.           ..+|.+..+| .+..++.|+.++++.|..
T Consensus       395 L-------~-~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  395 L-------N-SFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             c-------c-cCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence            1       1 11111 33443 899999999999999976           5788999999 889999999999998742


Q ss_pred             -CCcCCC-cc-ccccccccccccccc----cCCCCCCCCEEeccCC
Q 038130          455 -LQSLPK-LP-FNLQGIFAHHCTALS----SISYKSSTQLFDLSDN  493 (526)
Q Consensus       455 -l~~lp~-~~-~~L~~L~l~~c~~L~----~l~~~~~L~~L~l~~c  493 (526)
                       ...+|. .+ ++|++|++++...+.    .++.+..+...++.-+
T Consensus       465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             223343 35 799999999987432    3444555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.32  E-value=2.8e-13  Score=133.75  Aligned_cols=240  Identities=20%  Similarity=0.161  Sum_probs=125.5

Q ss_pred             hhccccCCCcEEeeCCCCCCC----cCCC-CCCCCcccEEEecccCCcc-------cCccccCCCCCCEEeccCCccCcc
Q 038130          249 AEILHLEFLKKLNLLGCSKLK----RLPE-FSSSGKIEEIWLDGTAIEE-------LPSSIGCLSRLLYLYLSDCKRLKS  316 (526)
Q Consensus       249 ~~~~~l~~L~~L~l~~~~~~~----~lp~-~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~  316 (526)
                      ..+..+..|++|++++|....    .++. +...+.+++|+++++.+..       ++..+..+++|+.|++++|.+...
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            334445556666666654211    1221 3444555666666554431       234455666777777777665443


Q ss_pred             cCcCCCCCCC---CcEEeecCCCCCC----cCCCcccCc-ccccceeeccccccccc----cChhhhcccCCcceEEccc
Q 038130          317 LPSSLSQLKS---LKLLNLHGCSNLQ----RLPDDFGNL-EASNSTLYAKGTAAKRE----VPSSIVGSNNNLYELSLDR  384 (526)
Q Consensus       317 lp~~i~~l~~---L~~L~l~~~~~~~----~lp~~~~~l-~~L~~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~l~~  384 (526)
                      .+..+..+.+   |++|++++|....    .+...+..+ ++|+ .|++++|.+++.    ++..+... ++|++|++..
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~  174 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE-KLVLGRNRLEGASCEALAKALRAN-RDLKELNLAN  174 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce-EEEcCCCcCCchHHHHHHHHHHhC-CCcCEEECcC
Confidence            4433333333   7777777664331    122234444 5666 777777766422    22223233 5677777733


Q ss_pred             CCCCCCCCCCCCC--cccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC----c-
Q 038130          385 SWGGDKQMGLSSP--ITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ----S-  457 (526)
Q Consensus       385 ~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~----~-  457 (526)
                          |.... .+.  ....+... ++|+.|++++|.+++       .....++..+..+++|+.|++++|+.-.    . 
T Consensus       175 ----n~l~~-~~~~~l~~~l~~~-~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         175 ----NGIGD-AGIRALAEGLKAN-CNLEVLDLNNNGLTD-------EGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             ----CCCch-HHHHHHHHHHHhC-CCCCEEeccCCccCh-------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence                22110 000  00001122 378888888776543       1333455556677788888888875322    1 


Q ss_pred             ---CCCcccccccccccccccc--------ccCCCCCCCCEEeccCCCCCCHHHHHHH
Q 038130          458 ---LPKLPFNLQGIFAHHCTAL--------SSISYKSSTQLFDLSDNFKLDRNAVRII  504 (526)
Q Consensus       458 ---lp~~~~~L~~L~l~~c~~L--------~~l~~~~~L~~L~l~~c~~l~~~~~~~~  504 (526)
                         ++...+.|+.|++.+|.--        +.++.+++|+++++++|. +...+...+
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~  298 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLL  298 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHH
Confidence               1111257888888777432        234457899999999984 444444333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.32  E-value=1.5e-12  Score=141.61  Aligned_cols=203  Identities=27%  Similarity=0.316  Sum_probs=124.9

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-CCcCCC--CCCCCcccEEEeccc-CCcccCccccCCCCCCE
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK-LKRLPE--FSSSGKIEEIWLDGT-AIEELPSSIGCLSRLLY  305 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~--~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~  305 (526)
                      ....|...+.++ ....++.... ++.|++|-+.++.. +..++.  |..++.|++|||++| .+..+|.+|+.|.+|||
T Consensus       522 ~~~~rr~s~~~~-~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  522 WNSVRRMSLMNN-KIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hhheeEEEEecc-chhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            345566666663 3344444333 55788888888753 555554  777888899999944 45688999999999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc--ccccChhhhcccCCcceEEcc
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA--KREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      |+++++. +..+|.++.+|..|.+|++..+.....+|..+..|.+|+ +|.+.....  +......+..+ .+|+.+...
T Consensus       600 L~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr-~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~  676 (889)
T KOG4658|consen  600 LDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR-VLRLPRSALSNDKLLLKELENL-EHLENLSIT  676 (889)
T ss_pred             ccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc-EEEeeccccccchhhHHhhhcc-cchhhheee
Confidence            9998865 668888888999999999888776677776677788888 887766431  12222223222 555555442


Q ss_pred             cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130          384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL  455 (526)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l  455 (526)
                      .    +........  .....+.+..+.+.+.++            .....+..+..+.+|+.|.+.+|...
T Consensus       677 ~----~s~~~~e~l--~~~~~L~~~~~~l~~~~~------------~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  677 I----SSVLLLEDL--LGMTRLRSLLQSLSIEGC------------SKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             c----chhHhHhhh--hhhHHHHHHhHhhhhccc------------ccceeecccccccCcceEEEEcCCCc
Confidence            1    111000000  001111122333443332            33344556778888888888888754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=3.2e-12  Score=126.28  Aligned_cols=249  Identities=16%  Similarity=0.110  Sum_probs=114.7

Q ss_pred             cceEEEeccCCCC----CCCChhccccCCCcEEeeCCCCCCC------cCC-CCCCCCcccEEEecccCCc-ccCccccC
Q 038130          232 TLVILNLSEYVSL----NSLPAEILHLEFLKKLNLLGCSKLK------RLP-EFSSSGKIEEIWLDGTAIE-ELPSSIGC  299 (526)
Q Consensus       232 ~l~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~------~lp-~~~~l~~L~~L~L~~~~i~-~lp~~i~~  299 (526)
                      .++.|+++++...    ..++..+...+.|+.|+++++....      .++ .+..+.+|+.|+++++.+. ..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            3566666664321    1233444455566666666643321      011 1444556666666666654 23333333


Q ss_pred             CCC---CCEEeccCCccCc----ccCcCCCCC-CCCcEEeecCCCCCC----cCCCcccCcccccceeeccccccccc--
Q 038130          300 LSR---LLYLYLSDCKRLK----SLPSSLSQL-KSLKLLNLHGCSNLQ----RLPDDFGNLEASNSTLYAKGTAAKRE--  365 (526)
Q Consensus       300 L~~---L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~~L~l~~~~~~~~--  365 (526)
                      +.+   |++|++++|....    .+...+..+ ++|+.|++++|....    .++..+..++.|+ .|++++|.+.+.  
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK-ELNLANNGIGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC-EEECcCCCCchHHH
Confidence            333   6666666665431    222233444 666666666655432    1223344455566 666666665322  


Q ss_pred             --cChhhhcccCCcceEEcccCCCCCCCCCCCC-CcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh-cc
Q 038130          366 --VPSSIVGSNNNLYELSLDRSWGGDKQMGLSS-PITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII-QL  441 (526)
Q Consensus       366 --~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~-~l  441 (526)
                        ++..+... ++|+.|+++.    |....... .....+... ++|++|++++|.++..       .+..+...+. ..
T Consensus       183 ~~l~~~l~~~-~~L~~L~L~~----n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~-------~~~~l~~~~~~~~  249 (319)
T cd00116         183 RALAEGLKAN-CNLEVLDLNN----NGLTDEGASALAETLASL-KSLEVLNLGDNNLTDA-------GAAALASALLSPN  249 (319)
T ss_pred             HHHHHHHHhC-CCCCEEeccC----CccChHHHHHHHHHhccc-CCCCEEecCCCcCchH-------HHHHHHHHHhccC
Confidence              22222233 4666666632    21100000 000001122 3677777776654320       1111111111 13


Q ss_pred             CCCCEecccCCccC----CcCC---Ccccccccccccccccccc--------CCCC-CCCCEEeccCCC
Q 038130          442 SRLVVLNLNYCERL----QSLP---KLPFNLQGIFAHHCTALSS--------ISYK-SSTQLFDLSDNF  494 (526)
Q Consensus       442 ~~L~~L~L~~~~~l----~~lp---~~~~~L~~L~l~~c~~L~~--------l~~~-~~L~~L~l~~c~  494 (526)
                      +.|++|++++|...    ..+.   +..++|+.++++++.--..        +... +.|++|+|.++|
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            56677777666422    0111   1124566666665432211        1223 678888888876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=1.9e-11  Score=120.97  Aligned_cols=172  Identities=25%  Similarity=0.332  Sum_probs=87.6

Q ss_pred             CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccc
Q 038130          274 FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNS  353 (526)
Q Consensus       274 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  353 (526)
                      +..+..|..|.|..|.+..+|..+++|..|.+|+|+.|. +..+|..++.|+ |+.|-+++ +.++.+|+.++.+..|. 
T Consensus        94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~-  169 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA-  169 (722)
T ss_pred             HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH-
Confidence            444444444555555555555555555555555555544 334444444332 45554444 33455555555444455 


Q ss_pred             eeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccc
Q 038130          354 TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFER  433 (526)
Q Consensus       354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~  433 (526)
                      .|+.+.|.+ ..+|+.+..+ .+|+.|++..|    .....    +..+. .. .|..||++.|            ++..
T Consensus       170 ~ld~s~nei-~slpsql~~l-~slr~l~vrRn----~l~~l----p~El~-~L-pLi~lDfScN------------kis~  225 (722)
T KOG0532|consen  170 HLDVSKNEI-QSLPSQLGYL-TSLRDLNVRRN----HLEDL----PEELC-SL-PLIRLDFSCN------------KISY  225 (722)
T ss_pred             Hhhhhhhhh-hhchHHhhhH-HHHHHHHHhhh----hhhhC----CHHHh-CC-ceeeeecccC------------ceee
Confidence            555555555 5555555544 55555555322    10000    00011 11 5677777766            4455


Q ss_pred             ccHHHhccCCCCEecccCCccCCcCCCc------ccccccccccccc
Q 038130          434 IPESIIQLSRLVVLNLNYCERLQSLPKL------PFNLQGIFAHHCT  474 (526)
Q Consensus       434 lp~~l~~l~~L~~L~L~~~~~l~~lp~~------~~~L~~L~l~~c~  474 (526)
                      +|..+.+|+.|++|-|.+|+ +.+-|.-      ..-.++|++.-|.
T Consensus       226 iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence            67778888888888888774 4444421      1235666666663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.00  E-value=4.5e-11  Score=113.34  Aligned_cols=125  Identities=26%  Similarity=0.316  Sum_probs=89.3

Q ss_pred             ceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEE-EecccCCcccCcc-ccCCCCCCEEec
Q 038130          233 LVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEI-WLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L-~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      -..++|.. +.+..+| ..|+.+++||.|||++|.....-|+ |.++..+-.| .+++|.|+.+|.. |++|..|+.|.+
T Consensus        69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            35677777 4566666 5688999999999999765444454 8888888444 4556999999875 788999999988


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeecccc
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGT  360 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~  360 (526)
                      .-|...-...+.+..+++|..|.+.+| ....++. .+..+..++ ++.+..|
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~-tlhlA~n  198 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIK-TLHLAQN  198 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccc-hHhhhcC
Confidence            877755555566777888888888774 3455554 466666666 6655444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.87  E-value=6.5e-11  Score=112.28  Aligned_cols=105  Identities=26%  Similarity=0.333  Sum_probs=81.3

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccC-ccccCCCCCCEE
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYL  306 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L  306 (526)
                      ..++|.|||++|.....-|+.|..++.|..|-+-+++.++.+|.  |.++..++.|.+.-|++..++ ..+..|++|..|
T Consensus        90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence            35789999999877777789999999999998888778999985  889999999988888888554 457888888888


Q ss_pred             eccCCccCcccCc-CCCCCCCCcEEeecCC
Q 038130          307 YLSDCKRLKSLPS-SLSQLKSLKLLNLHGC  335 (526)
Q Consensus       307 ~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~  335 (526)
                      .+..|. ...++. .+..+..++++.+..|
T Consensus       170 slyDn~-~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  170 SLYDNK-IQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             cccchh-hhhhccccccchhccchHhhhcC
Confidence            888765 344444 5566666666655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=5.9e-09  Score=91.52  Aligned_cols=61  Identities=30%  Similarity=0.499  Sum_probs=8.8

Q ss_pred             CCCCCCCCcccEEEecccCCcccCcccc-CCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          271 LPEFSSSGKIEEIWLDGTAIEELPSSIG-CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       271 lp~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      .+.+.+..+++.|+|+++.|+.+. .++ .+.+|+.|++++|. +..++ .+..+++|++|++++
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSN   73 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S
T ss_pred             cccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCC
Confidence            333444444555555555555442 233 34555555555554 22232 244445555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.75  E-value=1.5e-08  Score=108.26  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=93.2

Q ss_pred             cccEEEecccCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeec
Q 038130          279 KIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYA  357 (526)
Q Consensus       279 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l  357 (526)
                      .++.|+|+++.+. .+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|++++|...+.+|..+++|++|+ .|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~-~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR-ILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-EEEC
Confidence            4678899999887 7899999999999999999988889999899999999999999888888999999999999 9999


Q ss_pred             cccccccccChhhhcccCCcceEEcccC
Q 038130          358 KGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       358 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ++|.+.+.+|..+.....++..+++..|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCC
Confidence            9999988999988765566777888555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.71  E-value=1.7e-08  Score=102.71  Aligned_cols=181  Identities=29%  Similarity=0.351  Sum_probs=121.8

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCC--cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCc
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSG--KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLK  328 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~--~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~  328 (526)
                      +..+..+..|++.++. +..++......  +|+.|++++|.+..+|..++.+++|+.|+++.|. +..+|...+.+++|+
T Consensus       112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            4456778888887754 55566544333  7888888888888887778888888888888876 566777666788888


Q ss_pred             EEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130          329 LLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT  408 (526)
Q Consensus       329 ~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      .|++++ +.+..+|..++.+..|. .+.+++|.. ...+..+... .++..|.+..|...+    .    ...+..+ ++
T Consensus       190 ~L~ls~-N~i~~l~~~~~~~~~L~-~l~~~~N~~-~~~~~~~~~~-~~l~~l~l~~n~~~~----~----~~~~~~l-~~  256 (394)
T COG4886         190 NLDLSG-NKISDLPPEIELLSALE-ELDLSNNSI-IELLSSLSNL-KNLSGLELSNNKLED----L----PESIGNL-SN  256 (394)
T ss_pred             heeccC-CccccCchhhhhhhhhh-hhhhcCCcc-eecchhhhhc-ccccccccCCceeee----c----cchhccc-cc
Confidence            888888 45677777666666677 888888855 4555555555 666666653331111    0    1112233 37


Q ss_pred             ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      ++.|++++|.++.+            +. ++.+.+|+.|+++++.....+|
T Consensus       257 l~~L~~s~n~i~~i------------~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         257 LETLDLSNNQISSI------------SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cceecccccccccc------------cc-ccccCccCEEeccCccccccch
Confidence            88888888866553            32 6678888899888876555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.70  E-value=9.1e-10  Score=109.26  Aligned_cols=141  Identities=28%  Similarity=0.405  Sum_probs=81.0

Q ss_pred             EEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccC
Q 038130          236 LNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRL  314 (526)
Q Consensus       236 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~  314 (526)
                      +.++. +.+..+|..+.++..|.+|+|+.|. +..+|. ++.+ -|++|-+++|+++.+|..++.+.+|..||.+.|. +
T Consensus       103 liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i  178 (722)
T KOG0532|consen  103 LILYH-NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-I  178 (722)
T ss_pred             HHHHh-ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-h
Confidence            33443 3445566666666666666666643 444443 3322 3566666666666666666666666666666655 4


Q ss_pred             cccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          315 KSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       315 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ..+|..++.+.+|+.|.+.. +.+..+|+.++.| .|. .||++.|++ ..+|..+..+ +.|++|.|.+|
T Consensus       179 ~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi-~lDfScNki-s~iPv~fr~m-~~Lq~l~LenN  244 (722)
T KOG0532|consen  179 QSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLI-RLDFSCNKI-SYLPVDFRKM-RHLQVLQLENN  244 (722)
T ss_pred             hhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-cee-eeecccCce-eecchhhhhh-hhheeeeeccC
Confidence            45555566666666666665 3345555555544 355 666666666 5666666555 66666666443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.6e-09  Score=101.93  Aligned_cols=85  Identities=19%  Similarity=0.153  Sum_probs=51.1

Q ss_pred             cccCCCcEEeeCCCCCCCcCC---CCCCCCcccEEEecccCCc---ccCccccCCCCCCEEeccCCccCcccCcC-CCCC
Q 038130          252 LHLEFLKKLNLLGCSKLKRLP---EFSSSGKIEEIWLDGTAIE---ELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQL  324 (526)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~lp---~~~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l  324 (526)
                      +++++|+...|.++. +...+   ....+++++.|+|+.|-+.   .+-.-+..|++|+.|+|+.|.+.-...+. -..+
T Consensus       118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            467888888888754 44444   3567777888888877665   23334567778888888877643211111 1134


Q ss_pred             CCCcEEeecCCCC
Q 038130          325 KSLKLLNLHGCSN  337 (526)
Q Consensus       325 ~~L~~L~l~~~~~  337 (526)
                      ++|+.|.++.|..
T Consensus       197 ~~lK~L~l~~CGl  209 (505)
T KOG3207|consen  197 SHLKQLVLNSCGL  209 (505)
T ss_pred             hhhheEEeccCCC
Confidence            5555555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=3.7e-09  Score=101.90  Aligned_cols=149  Identities=19%  Similarity=0.164  Sum_probs=98.0

Q ss_pred             CcceEEEeccCCCCCCCC--hhccccCCCcEEeeCCCCCCCcCC--C-CCCCCcccEEEecccCCcccCcc--ccCCCCC
Q 038130          231 NTLVILNLSEYVSLNSLP--AEILHLEFLKKLNLLGCSKLKRLP--E-FSSSGKIEEIWLDGTAIEELPSS--IGCLSRL  303 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp--~-~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L  303 (526)
                      ..|+.+.+.++ .+...+  .....|++++.|||++|-.....+  . ...+++|+.|+|+.|.+...-.+  -..+.+|
T Consensus       121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            45677777764 333333  356789999999999975433333  2 57899999999999987633222  2467899


Q ss_pred             CEEeccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccCh-hhhcccCCcceEE
Q 038130          304 LYLYLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPS-SIVGSNNNLYELS  381 (526)
Q Consensus       304 ~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~-~l~~~~~~L~~L~  381 (526)
                      +.|.|+.|.+.- .+-.....+++|..|++..|.....-.....-+..|+ .|++++|++ -..+. .....++.|+.|+
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~-~LdLs~N~l-i~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ-ELDLSNNNL-IDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh-hccccCCcc-cccccccccccccchhhhh
Confidence            999999998652 2222345688999999999754333323344556677 899999887 33331 2222236666666


Q ss_pred             c
Q 038130          382 L  382 (526)
Q Consensus       382 l  382 (526)
                      +
T Consensus       278 l  278 (505)
T KOG3207|consen  278 L  278 (505)
T ss_pred             c
Confidence            6

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=9.3e-08  Score=102.29  Aligned_cols=104  Identities=31%  Similarity=0.401  Sum_probs=66.0

Q ss_pred             CcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          257 LKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      ++.|+|++|.....+|. +..+.+|+.|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666554444553 666666677777766665 6666677777777777777666666676666777777777776


Q ss_pred             CCCCCcCCCcccCc-ccccceeeccccc
Q 038130          335 CSNLQRLPDDFGNL-EASNSTLYAKGTA  361 (526)
Q Consensus       335 ~~~~~~lp~~~~~l-~~L~~~L~l~~~~  361 (526)
                      |...+.+|..++.+ ..+. .+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~-~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRA-SFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCc-eEEecCCc
Confidence            66666666665543 2334 55665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.61  E-value=6.2e-08  Score=98.66  Aligned_cols=182  Identities=27%  Similarity=0.354  Sum_probs=140.2

Q ss_pred             HHHhhcCcceEEEeccCCCCCCCChhccccC-CCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCC
Q 038130          225 YEVLIVNTLVILNLSEYVSLNSLPAEILHLE-FLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSR  302 (526)
Q Consensus       225 ~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~  302 (526)
                      ........++.|++.+ +.+..++.....+. +|+.|++++|. +..+| .+..+++|+.|+++.|++..+|...+.+++
T Consensus       110 ~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~  187 (394)
T COG4886         110 SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN  187 (394)
T ss_pred             hhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence            3344446788999988 56677887677664 99999999964 66675 689999999999999999999998889999


Q ss_pred             CCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          303 LLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       303 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      |+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++..+. .+.+.+|.+ ..++..+..+ ++++.|++
T Consensus       188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~-~l~l~~n~~-~~~~~~~~~l-~~l~~L~~  262 (394)
T COG4886         188 LNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLS-GLELSNNKL-EDLPESIGNL-SNLETLDL  262 (394)
T ss_pred             hhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccc-ccccCCcee-eeccchhccc-cccceecc
Confidence            9999999987 67788877777789999999864 445566788888888 888888887 5556666666 88999999


Q ss_pred             ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130          383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELP  423 (526)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp  423 (526)
                      +.|    .......     +... .+++.|+++++.++..+
T Consensus       263 s~n----~i~~i~~-----~~~~-~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         263 SNN----QISSISS-----LGSL-TNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccc----ccccccc-----cccc-CccCEEeccCccccccc
Confidence            544    2222222     2233 39999999999877643

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=98.60  E-value=5.3e-07  Score=77.24  Aligned_cols=120  Identities=37%  Similarity=0.617  Sum_probs=93.0

Q ss_pred             CCcEEEeccc-ccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHH
Q 038130           13 RNDVFLSFKG-EDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKI   90 (526)
Q Consensus        13 ~~~~f~s~~~-~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i   90 (526)
                      +|||||||++ ++.+.-|..++..++...++.++.|+..+.+... .+|.+...++... +++...++.+.|...||..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999999 6778889999999999999999999855443333 3888999899988 66678899999999999999


Q ss_pred             HHHHhh-CCCeEEEEEeeccchhhhhccccHHHHHHHHHhhchh
Q 038130           91 VECRTN-YGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPD  133 (526)
Q Consensus        91 ~~~~~~-~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~  133 (526)
                      .+.... ....|+|+.|+.-|...+.+=-.+-..++.++.-|++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~  123 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPE  123 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCC
Confidence            988754 5668999999988765554333444555665555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.53  E-value=1e-07  Score=83.78  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             cccEEEccCCCCCCCCCccCCCCcccccHHH-hccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCC
Q 038130          408 TLTSLYLNYCGILELPDSLEKNNFERIPESI-IQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQ  486 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~  486 (526)
                      +|+.|++++|.++            .+++.+ ..+++|++|.+++|.                |.+...+..+..+++|+
T Consensus        65 ~L~~L~L~~N~I~------------~i~~~l~~~lp~L~~L~L~~N~----------------I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   65 RLKTLDLSNNRIS------------SISEGLDKNLPNLQELYLSNNK----------------ISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T--EEE--SS---------------S-CHHHHHH-TT--EEE-TTS-------------------SCCCCGGGGG-TT--
T ss_pred             hhhhcccCCCCCC------------ccccchHHhCCcCCEEECcCCc----------------CCChHHhHHHHcCCCcc
Confidence            7777777776543            333344 357777777777772                22233344445566677


Q ss_pred             EEeccCCCCCCHHHHHHHHHHHHhhhHHh
Q 038130          487 LFDLSDNFKLDRNAVRIIVEDALQDIQLM  515 (526)
Q Consensus       487 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  515 (526)
                      .|++.+||--.....+..+...+|+++++
T Consensus       117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen  117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred             eeeccCCcccchhhHHHHHHHHcChhhee
Confidence            77777776666666666666666666655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.52  E-value=3.6e-09  Score=101.46  Aligned_cols=153  Identities=21%  Similarity=0.233  Sum_probs=101.3

Q ss_pred             cccccceeecccc-ccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCcc
Q 038130          348 LEASNSTLYAKGT-AAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSL  426 (526)
Q Consensus       348 l~~L~~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l  426 (526)
                      +..|+ .++.+++ .++......++..+.+|+.|-+    .+|..+...+...  +....+.|+.+++..|....     
T Consensus       293 c~~lq-~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l----~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~-----  360 (483)
T KOG4341|consen  293 CHALQ-VLCYSSCTDITDEVLWALGQHCHNLQVLEL----SGCQQFSDRGFTM--LGRNCPHLERLDLEECGLIT-----  360 (483)
T ss_pred             hhHhh-hhcccCCCCCchHHHHHHhcCCCceEEEec----cccchhhhhhhhh--hhcCChhhhhhcccccceeh-----
Confidence            44555 6666554 2323333445556677777777    6776554444333  22334477777777765321     


Q ss_pred             CCCCcccccHHHhccCCCCEecccCCccCCcC-----C---Ccccccccccccccccccc-----CCCCCCCCEEeccCC
Q 038130          427 EKNNFERIPESIIQLSRLVVLNLNYCERLQSL-----P---KLPFNLQGIFAHHCTALSS-----ISYKSSTQLFDLSDN  493 (526)
Q Consensus       427 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l-----p---~~~~~L~~L~l~~c~~L~~-----l~~~~~L~~L~l~~c  493 (526)
                         . ..+-..-.+++.|+.|.+++|..+...     .   .....|..+.+.+|+.++.     +..+++|+.+++.+|
T Consensus       361 ---d-~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  361 ---D-GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ---h-hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence               0 012222346899999999999765544     1   2345788999999987654     557999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhHHhhh
Q 038130          494 FKLDRNAVRIIVEDALQDIQLMAA  517 (526)
Q Consensus       494 ~~l~~~~~~~~~~~~~~~~~~~~~  517 (526)
                      ..+++.+...+.+ ..|++.|++.
T Consensus       437 q~vtk~~i~~~~~-~lp~i~v~a~  459 (483)
T KOG4341|consen  437 QDVTKEAISRFAT-HLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhhHHHHh-hCccceehhh
Confidence            9999999988855 4889999875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=3e-08  Score=91.19  Aligned_cols=68  Identities=22%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             hHHHHhh-cCcceEEEeccCCC--------CCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc
Q 038130          223 DIYEVLI-VNTLVILNLSEYVS--------LNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE  291 (526)
Q Consensus       223 ~~~~~~~-~~~l~~L~l~~~~~--------~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~  291 (526)
                      |..|++. .+.+++|.+++...        -..+|-.+.-+++|..+.++.|. .+.+.+ ...-+.|+.+...++-+.
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~  250 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQ  250 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccc
Confidence            3444433 24567777765321        12234445557788888888875 233333 233445666766655544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.45  E-value=2.5e-08  Score=91.65  Aligned_cols=120  Identities=21%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeec
Q 038130          255 EFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH  333 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~  333 (526)
                      +.|.+|||++|. ++.+. +..-.+.+|.|+++.|.|..+.. +..|++|+.|||++|. +..+-.+-.+|.++++|.++
T Consensus       284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence            445555555532 22232 23444455555555555554433 4555555555555543 22232222344555555555


Q ss_pred             CCCCCCcCCCcccCcccccceeeccccccccccC--hhhhcccCCcceEEc
Q 038130          334 GCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVP--SSIVGSNNNLYELSL  382 (526)
Q Consensus       334 ~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l  382 (526)
                      +| .++.+ .++++|-+|. .||+++|++ ..+.  .+|+++ +.|+.|.+
T Consensus       361 ~N-~iE~L-SGL~KLYSLv-nLDl~~N~I-e~ldeV~~IG~L-PCLE~l~L  406 (490)
T KOG1259|consen  361 QN-KIETL-SGLRKLYSLV-NLDLSSNQI-EELDEVNHIGNL-PCLETLRL  406 (490)
T ss_pred             hh-hHhhh-hhhHhhhhhe-eccccccch-hhHHHhcccccc-cHHHHHhh
Confidence            42 22222 3344555555 555555544 3322  234444 55555555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=4.3e-07  Score=65.32  Aligned_cols=57  Identities=28%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             cccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130          279 KIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       279 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~  335 (526)
                      +|++|++++|.++.+|. .+.++++|++|++++|.+...-|..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            45666666666666653 4566666666666666544444445566666666666664

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.35  E-value=1.5e-06  Score=85.82  Aligned_cols=157  Identities=24%  Similarity=0.430  Sum_probs=77.5

Q ss_pred             cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecc
Q 038130          279 KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAK  358 (526)
Q Consensus       279 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~  358 (526)
                      +++.|+++++.++.+|. +  ..+|+.|.+++|..+..+|..+  ..+|++|++++|..+..+|..      |+ .|++.
T Consensus        53 ~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le-~L~L~  120 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR-SLEIK  120 (426)
T ss_pred             CCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc-eEEeC
Confidence            34444444444555541 1  1356666776666566666543  346777777776666666654      33 44444


Q ss_pred             ccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHH
Q 038130          359 GTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESI  438 (526)
Q Consensus       359 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l  438 (526)
                      ++.. ..    +..++++|+.|.+..    .......   ..+ ..++++|+.|++++|....+|        ..+|   
T Consensus       121 ~n~~-~~----L~~LPssLk~L~I~~----~n~~~~~---~lp-~~LPsSLk~L~Is~c~~i~LP--------~~LP---  176 (426)
T PRK15386        121 GSAT-DS----IKNVPNGLTSLSINS----YNPENQA---RID-NLISPSLKTLSLTGCSNIILP--------EKLP---  176 (426)
T ss_pred             CCCC-cc----cccCcchHhheeccc----ccccccc---ccc-cccCCcccEEEecCCCcccCc--------cccc---
Confidence            4332 11    122334566666621    1100000   000 124458888888887644332        1233   


Q ss_pred             hccCCCCEecccCCccC-CcCC--Cccccccccccccccc
Q 038130          439 IQLSRLVVLNLNYCERL-QSLP--KLPFNLQGIFAHHCTA  475 (526)
Q Consensus       439 ~~l~~L~~L~L~~~~~l-~~lp--~~~~~L~~L~l~~c~~  475 (526)
                         .+|+.|.++.+... -.++  .+++++ .|.+.+|..
T Consensus       177 ---~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk  212 (426)
T PRK15386        177 ---ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL  212 (426)
T ss_pred             ---ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence               47788887765211 1111  234556 666666643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.29  E-value=3.2e-08  Score=93.04  Aligned_cols=184  Identities=16%  Similarity=0.070  Sum_probs=96.9

Q ss_pred             CCCCCCEEeccCCccCcccCcC----CCCCCCCcEEeecCCCCCCc-------------CCCcccCcccccceeeccccc
Q 038130          299 CLSRLLYLYLSDCKRLKSLPSS----LSQLKSLKLLNLHGCSNLQR-------------LPDDFGNLEASNSTLYAKGTA  361 (526)
Q Consensus       299 ~L~~L~~L~L~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~-------------lp~~~~~l~~L~~~L~l~~~~  361 (526)
                      ..++|++||||.|.+....+..    +.+++.|++|+|.+|.....             .-.-.+.-+.|+ .+....|.
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNr  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR-VFICGRNR  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE-EEEeeccc
Confidence            3345666666655543322221    34455666666665432110             001122334566 77777776


Q ss_pred             cccccCh----hhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHH
Q 038130          362 AKREVPS----SIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPES  437 (526)
Q Consensus       362 ~~~~~~~----~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~  437 (526)
                      + ..-+.    ..+...+.|+.+.+..|..+.....   .....+.. +++|+.|+|..|-++.-       .-..+...
T Consensus       169 l-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---al~eal~~-~~~LevLdl~DNtft~e-------gs~~Laka  236 (382)
T KOG1909|consen  169 L-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---ALAEALEH-CPHLEVLDLRDNTFTLE-------GSVALAKA  236 (382)
T ss_pred             c-ccccHHHHHHHHHhccccceEEEecccccCchhH---HHHHHHHh-CCcceeeecccchhhhH-------HHHHHHHH
Confidence            5 33332    1223336777777765522222110   00111222 34888888888865431       11134455


Q ss_pred             HhccCCCCEecccCCccC--------CcCCCcccccccccccccccccc--------CCCCCCCCEEeccCCCC
Q 038130          438 IIQLSRLVVLNLNYCERL--------QSLPKLPFNLQGIFAHHCTALSS--------ISYKSSTQLFDLSDNFK  495 (526)
Q Consensus       438 l~~l~~L~~L~L~~~~~l--------~~lp~~~~~L~~L~l~~c~~L~~--------l~~~~~L~~L~l~~c~~  495 (526)
                      +..+++|+.|++++|..-        ..+....|+|+.|.+.+|..-..        +...|.|..|+|++|.-
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            667788888888888421        11223456888888777643322        12488899999999954

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.8e-08  Score=90.44  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             ccEEEecccCCc--ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC--cccCccccccee
Q 038130          280 IEEIWLDGTAIE--ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD--DFGNLEASNSTL  355 (526)
Q Consensus       280 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~~L  355 (526)
                      |++|||+...|+  .+-.-+..+.+|+.|.+.++.+...+...|.+-.+|+.|+++.|+..+....  -+.+++.|. .|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~-~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD-EL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh-hc
Confidence            667777766666  3444456677777777877766555666677777788888877765544221  244555555 55


Q ss_pred             ecccccc
Q 038130          356 YAKGTAA  362 (526)
Q Consensus       356 ~l~~~~~  362 (526)
                      +++.|.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            5555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=5e-07  Score=85.13  Aligned_cols=211  Identities=17%  Similarity=0.176  Sum_probs=127.7

Q ss_pred             CCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCc----ccCc-------CCCCCCCCcEEeecCCCCC
Q 038130          275 SSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SLPS-------SLSQLKSLKLLNLHGCSNL  338 (526)
Q Consensus       275 ~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp~-------~i~~l~~L~~L~l~~~~~~  338 (526)
                      .....+.+++|++|.+.     .+-..+.+.++|+.-++++ -+++    .+|+       .+-..++|+.|+|++|-..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            33444555666655554     2334455666777777765 2233    2333       2445779999999998765


Q ss_pred             CcCCCc----ccCcccccceeeccccccccccChhh-------------hcccCCcceEEcccCCCCCCCCCCCCCccc-
Q 038130          339 QRLPDD----FGNLEASNSTLYAKGTAAKREVPSSI-------------VGSNNNLYELSLDRSWGGDKQMGLSSPITL-  400 (526)
Q Consensus       339 ~~lp~~----~~~l~~L~~~L~l~~~~~~~~~~~~l-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-  400 (526)
                      ...++.    +.++..|+ +|.+.+|++ +......             ....++|+++....|.....     +.... 
T Consensus       106 ~~g~~~l~~ll~s~~~L~-eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-----ga~~~A  178 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLE-ELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-----GATALA  178 (382)
T ss_pred             ccchHHHHHHHHhccCHH-HHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-----cHHHHH
Confidence            555544    45677899 999999988 4322211             11236788888755421111     11000 


Q ss_pred             CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC--------cCCCcccccccccccc
Q 038130          401 PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ--------SLPKLPFNLQGIFAHH  472 (526)
Q Consensus       401 ~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~--------~lp~~~~~L~~L~l~~  472 (526)
                      ......+.|+.+.+..|.+..       ..++.+...+..+++|+.|+|++|..-.        .+|. .++|+.|++.+
T Consensus       179 ~~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d  250 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD  250 (382)
T ss_pred             HHHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence            011223488999998887643       2445566778899999999999995321        2232 34899999998


Q ss_pred             cccccc--------C-CCCCCCCEEeccCCCCCCHHHHH
Q 038130          473 CTALSS--------I-SYKSSTQLFDLSDNFKLDRNAVR  502 (526)
Q Consensus       473 c~~L~~--------l-~~~~~L~~L~l~~c~~l~~~~~~  502 (526)
                      |--=..        + ...|+|+.|.+.+| .++..+..
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~  288 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAAL  288 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHH
Confidence            842211        1 13889999999998 34444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.10  E-value=3e-06  Score=60.89  Aligned_cols=61  Identities=30%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130          301 SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       301 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      ++|++|++++|.+...-+..+..+++|++|++++|.....-|..|.++++|+ .|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~-~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLR-YLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTES-EEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCC-EEeCcCCcC
Confidence            4677888887764433334667788888888887554444445677777777 777777753

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=2.1e-05  Score=77.81  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEeccc-CCcccCc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGT-AIEELPS  295 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~-~i~~lp~  295 (526)
                      ..++.|++++| .+..+|. +  ..+|++|.+++|..+..+|... ..+|++|+++++ .+..+|.
T Consensus        52 ~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence            55667777765 5556662 1  2346777776666665555411 234555555544 4444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.90  E-value=2.7e-06  Score=86.97  Aligned_cols=219  Identities=24%  Similarity=0.245  Sum_probs=118.2

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL  329 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~  329 (526)
                      +..+++|..|++.+|. +..+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|. +..++. +..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence            5557778888887753 555555 777788888888888877664 46667778888888776 333433 555777777


Q ss_pred             EeecCCCCCCcCCCc-ccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130          330 LNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT  408 (526)
Q Consensus       330 L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      +++++|.... +... ...+..++ .+.+.+|.+ ..+.. +... ..+..+++..|    ......+....   ... +
T Consensus       167 l~l~~n~i~~-ie~~~~~~~~~l~-~l~l~~n~i-~~i~~-~~~~-~~l~~~~l~~n----~i~~~~~l~~~---~~~-~  233 (414)
T KOG0531|consen  167 LDLSYNRIVD-IENDELSELISLE-ELDLGGNSI-REIEG-LDLL-KKLVLLSLLDN----KISKLEGLNEL---VML-H  233 (414)
T ss_pred             ccCCcchhhh-hhhhhhhhccchH-HHhccCCch-hcccc-hHHH-HHHHHhhcccc----cceeccCcccc---hhH-H
Confidence            8877754332 2221 35566666 777777766 22221 1111 22333333221    11111110000   000 3


Q ss_pred             ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--cccccccccccccccc------cc--
Q 038130          409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCTAL------SS--  478 (526)
Q Consensus       409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~~L------~~--  478 (526)
                      |+.+++++|.+..            ++..+..+.++..|++.++. +..+..  ..+.+..+.....+..      +.  
T Consensus       234 L~~l~l~~n~i~~------------~~~~~~~~~~l~~l~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  234 LRELYLSGNRISR------------SPEGLENLKNLPVLDLSSNR-ISNLEGLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             HHHHhcccCcccc------------ccccccccccccccchhhcc-ccccccccccchHHHhccCcchhcchhhhhcccc
Confidence            7888888876543            33455667788888888764 222211  1222222222222111      11  


Q ss_pred             CCCCCCCCEEeccCCCCCCHH
Q 038130          479 ISYKSSTQLFDLSDNFKLDRN  499 (526)
Q Consensus       479 l~~~~~L~~L~l~~c~~l~~~  499 (526)
                      .+..+.++.+.+..+|.-...
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             ccccccccccccccCcccccc
Confidence            234677777888887755533

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.5e-05  Score=52.62  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             CcccEEEecccCCcccCccccCCCCCCEEeccCCcc
Q 038130          278 GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKR  313 (526)
Q Consensus       278 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~  313 (526)
                      ++|++|++++|.|+.+|..+++|++|++|++++|.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            357788888888888877788888888888888763

...

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=97.86  E-value=2.5e-05  Score=66.93  Aligned_cols=99  Identities=33%  Similarity=0.589  Sum_probs=83.9

Q ss_pred             EEEecccccccCchHHHHHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHHH
Q 038130           16 VFLSFKGEDTRDNFTSHLYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKIV   91 (526)
Q Consensus        16 ~f~s~~~~d~~~~f~~~~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i~   91 (526)
                      |||||++.+..+.|.+++..+|...  +++.+.++ +..+|..+...|.+....+-.+ ++++..++.+.|+..|...+.
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            7999999433556999999999999  99999998 8999999999999999999999 677789999999999999999


Q ss_pred             HHHhhC--CCeEEEEEeeccchhhh
Q 038130           92 ECRTNY--GQIVVAVCYRVEPSHVR  114 (526)
Q Consensus        92 ~~~~~~--~~~il~~sY~~Lp~~lk  114 (526)
                      ++....  ...|+|+.|+.-++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~  105 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVR  105 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCH
T ss_pred             hhccccccccceeeEeccCChhhcC
Confidence            998654  36799998888777776

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.76  E-value=1.2e-06  Score=90.03  Aligned_cols=98  Identities=23%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             ccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeecc
Q 038130          280 IEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAK  358 (526)
Q Consensus       280 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~  358 (526)
                      |...+.++|.+..+..++.-++.|+.|+|+.|++.. .- .+..|++|+||||++| .+..+|. +...+. |+ .|.++
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~-~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQ-LLNLR  240 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccc-hhccccccchhhhh-he-eeeec
Confidence            344455566666555666666666666666665332 22 3556666666666663 3444443 122222 55 66666


Q ss_pred             ccccccccChhhhcccCCcceEEcccC
Q 038130          359 GTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       359 ~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      +|.+ ..+ .++.++ .+|+.|+++.|
T Consensus       241 nN~l-~tL-~gie~L-ksL~~LDlsyN  264 (1096)
T KOG1859|consen  241 NNAL-TTL-RGIENL-KSLYGLDLSYN  264 (1096)
T ss_pred             ccHH-Hhh-hhHHhh-hhhhccchhHh
Confidence            6655 222 223344 56666666443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.74  E-value=7.2e-07  Score=85.98  Aligned_cols=258  Identities=18%  Similarity=0.193  Sum_probs=163.8

Q ss_pred             CcceEEEeccCCCCCCC--ChhccccCCCcEEeeCCCCCCCcCC--C-CCCCCcccEEEecc-cCCcc--cCccccCCCC
Q 038130          231 NTLVILNLSEYVSLNSL--PAEILHLEFLKKLNLLGCSKLKRLP--E-FSSSGKIEEIWLDG-TAIEE--LPSSIGCLSR  302 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp--~-~~~l~~L~~L~L~~-~~i~~--lp~~i~~L~~  302 (526)
                      ..++.|.++++.....-  -....++++++.|.+.+|..+++..  . -..+.+|++|++.. ..++.  +-.-...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            46788999988766543  3445679999999999998766533  2 24567789999885 56662  2223457789


Q ss_pred             CCEEeccCCccCcc--cCcCCCCCCCCcEEeecCCCCCCc--CCCcccCcccccceeeccccc-cccccChhhhcccCCc
Q 038130          303 LLYLYLSDCKRLKS--LPSSLSQLKSLKLLNLHGCSNLQR--LPDDFGNLEASNSTLYAKGTA-AKREVPSSIVGSNNNL  377 (526)
Q Consensus       303 L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~~~~~~L  377 (526)
                      |.||++++|.-...  +-.-...+..++.+.+.+|...+.  +-..-+.+..+. .+++..|. ++..-.-.+...+..|
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~-~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEIL-KLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhh-ccchhhhccccchHHHHHhhhhhHh
Confidence            99999999874432  111234556677777777754321  100011222233 55554543 2222222344555788


Q ss_pred             ceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130          378 YELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS  457 (526)
Q Consensus       378 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~  457 (526)
                      +.|..    .+|.........  .+..-.++|+.|.++.|+-      +++..++.+.   .+.+.|+.+++..|.....
T Consensus       297 q~l~~----s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~------fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  297 QVLCY----SSCTDITDEVLW--ALGQHCHNLQVLELSGCQQ------FSDRGFTMLG---RNCPHLERLDLEECGLITD  361 (483)
T ss_pred             hhhcc----cCCCCCchHHHH--HHhcCCCceEEEeccccch------hhhhhhhhhh---cCChhhhhhcccccceehh
Confidence            88888    666553332221  2344456999999999972      1222332222   3678999999999864322


Q ss_pred             -----CCCccccccccccccccccccCC---------CCCCCCEEeccCCCCCCHHHHHHH
Q 038130          458 -----LPKLPFNLQGIFAHHCTALSSIS---------YKSSTQLFDLSDNFKLDRNAVRII  504 (526)
Q Consensus       458 -----lp~~~~~L~~L~l~~c~~L~~l~---------~~~~L~~L~l~~c~~l~~~~~~~~  504 (526)
                           +...-+.|+.|.+++|...+...         .+..|..+.+++||.+++...+.+
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence                 23345689999999998877652         478899999999999999888776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.70  E-value=1.6e-05  Score=81.39  Aligned_cols=129  Identities=23%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      +....+++.|++.+| .+..+...+..+++|++|++++| .++.+..+..+..|+.|++++|.|+.++. +..+..|+.+
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLL  167 (414)
T ss_pred             cccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence            444567899999984 55555554677999999999995 58888888888889999999999998753 6669999999


Q ss_pred             eccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130          307 YLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       307 ~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      ++++|.+.. +... ...+.+|+.+++.+|....  ..++..+..+. .+++..|.+
T Consensus       168 ~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~-~~~l~~n~i  220 (414)
T KOG0531|consen  168 DLSYNRIVD-IENDELSELISLEELDLGGNSIRE--IEGLDLLKKLV-LLSLLDNKI  220 (414)
T ss_pred             cCCcchhhh-hhhhhhhhccchHHHhccCCchhc--ccchHHHHHHH-Hhhcccccc
Confidence            999987543 4332 4678899999998864322  22333444444 445556555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.68  E-value=1.3e-06  Score=89.76  Aligned_cols=110  Identities=21%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCccccc
Q 038130          274 FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN  352 (526)
Q Consensus       274 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  352 (526)
                      +.-++.++.|+|+.|.+..+- .+..|++|++|||++|. +..+|.- ...+ .|+.|.+++| .++.+ .++.+|++|+
T Consensus       183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhh
Confidence            444556677777777776654 56677777777777765 4445541 1122 3777777663 33433 3566777777


Q ss_pred             ceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          353 STLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       353 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                       .||+++|-+.+.---.....+..|+.|.+..|...|
T Consensus       258 -~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  258 -GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence             777777655222111111122566666665554333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=2.2e-05  Score=84.09  Aligned_cols=150  Identities=22%  Similarity=0.200  Sum_probs=103.1

Q ss_pred             CcceEEEeccCCCCC-CCChhcc-ccCCCcEEeeCCCCCCCc-CC-CCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          231 NTLVILNLSEYVSLN-SLPAEIL-HLEFLKKLNLLGCSKLKR-LP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~-~lp~~~~-~l~~L~~L~l~~~~~~~~-lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      .+++.|++++..... ..|..++ .||.|+.|.+++-..... +. -..++++|+.||+++++++.+ ..+++|++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            567899998854432 3333333 589999999988332111 22 267889999999999999988 789999999999


Q ss_pred             eccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcC--C----CcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130          307 YLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRL--P----DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE  379 (526)
Q Consensus       307 ~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l--p----~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~  379 (526)
                      .+.+=.+.. .--..+.+|++|++||+|........  .    +.-..|+.|+ .||.+++.+...+.+.+....++|+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLr-fLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELR-FLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcccc-EEecCCcchhHHHHHHHHHhCccHhh
Confidence            998633221 11124678999999999974433221  1    1123477899 99999988877776666554477776


Q ss_pred             EEc
Q 038130          380 LSL  382 (526)
Q Consensus       380 L~l  382 (526)
                      +..
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.40  E-value=0.00017  Score=47.51  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=27.0

Q ss_pred             CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC
Q 038130          255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP  294 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp  294 (526)
                      ++|++|++++|. ++.+|. +..+++|++|++++|.|+.++
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            367788887764 556666 778888888888888777654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=5.4e-05  Score=70.17  Aligned_cols=82  Identities=18%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             ccCCCcEEeeCCCCCCCcCC---C-CCCCCcccEEEecccCCcccCccc-cCCCCCCEEeccCCccC-cccCcCCCCCCC
Q 038130          253 HLEFLKKLNLLGCSKLKRLP---E-FSSSGKIEEIWLDGTAIEELPSSI-GCLSRLLYLYLSDCKRL-KSLPSSLSQLKS  326 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp---~-~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~-~~lp~~i~~l~~  326 (526)
                      .++.++.|||.+|. +....   . +.+++.|++|+|++|++...-.+. -.+.+|++|-|.+..+. +.....+..++.
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            35566666666643 22211   1 445666666666666554211111 23446666666554321 112223445555


Q ss_pred             CcEEeecCC
Q 038130          327 LKLLNLHGC  335 (526)
Q Consensus       327 L~~L~l~~~  335 (526)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            556655554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=2.9e-05  Score=71.95  Aligned_cols=154  Identities=19%  Similarity=0.167  Sum_probs=83.2

Q ss_pred             CCcEEeecCCCCCCc-CCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCccc
Q 038130          326 SLKLLNLHGCSNLQR-LPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG  404 (526)
Q Consensus       326 ~L~~L~l~~~~~~~~-lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  404 (526)
                      .||+||++....... +-..+..+..|+ .|.+.++.+...+...+.+. .+|+.|++    ..|..+...+...  +..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk-~lSlEg~~LdD~I~~~iAkN-~~L~~lnl----sm~sG~t~n~~~l--l~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLK-NLSLEGLRLDDPIVNTIAKN-SNLVRLNL----SMCSGFTENALQL--LLS  257 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhh-hccccccccCcHHHHHHhcc-ccceeecc----ccccccchhHHHH--HHH
Confidence            477777776332211 222245566677 77777777766666677766 77777777    5555433322111  112


Q ss_pred             ccCcccEEEccCCCCCCCCCccCCCCcccccHHHhc-cCCCCEecccCCccC-C-----cCCCccccccccccccccccc
Q 038130          405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQ-LSRLVVLNLNYCERL-Q-----SLPKLPFNLQGIFAHHCTALS  477 (526)
Q Consensus       405 ~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~-l~~L~~L~L~~~~~l-~-----~lp~~~~~L~~L~l~~c~~L~  477 (526)
                      .++.|.+|+|+||.+..        .  .+-..+.+ -++|..|+|++|..- +     .+..--|+|.+|++++|..++
T Consensus       258 scs~L~~LNlsWc~l~~--------~--~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFT--------E--KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hhhhHhhcCchHhhccc--------h--hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            23477777777776443        0  01111222 256777777776421 1     111123566666666666665


Q ss_pred             cCC-----CCCCCCEEeccCCCCCC
Q 038130          478 SIS-----YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       478 ~l~-----~~~~L~~L~l~~c~~l~  497 (526)
                      .-.     .++.|++|.++.|-.+.
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCC
Confidence            421     36667777777665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.24  E-value=4.9e-05  Score=62.38  Aligned_cols=91  Identities=18%  Similarity=0.242  Sum_probs=59.8

Q ss_pred             ChhhHHHHhhcCcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccc
Q 038130          220 HHKDIYEVLIVNTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSI  297 (526)
Q Consensus       220 ~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i  297 (526)
                      .++-++++.....++..++++ +.++.+|..|. .++.+++|++++| .+..+|. +..++.||.|+++.|.+...|..|
T Consensus        42 i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi  119 (177)
T KOG4579|consen   42 IADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVI  119 (177)
T ss_pred             HHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHH
Confidence            444555566666677777777 45566665543 4557777777774 3555664 667777777777777777777766


Q ss_pred             cCCCCCCEEeccCCc
Q 038130          298 GCLSRLLYLYLSDCK  312 (526)
Q Consensus       298 ~~L~~L~~L~L~~~~  312 (526)
                      ..|.+|-+|+..+|.
T Consensus       120 ~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  120 APLIKLDMLDSPENA  134 (177)
T ss_pred             HHHHhHHHhcCCCCc
Confidence            667777777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.16  E-value=3.1e-05  Score=63.51  Aligned_cols=79  Identities=22%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             cCCCcEEeeCCCCCCCcCCC-C-CCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130          254 LEFLKKLNLLGCSKLKRLPE-F-SSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN  331 (526)
Q Consensus       254 l~~L~~L~l~~~~~~~~lp~-~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~  331 (526)
                      ...|...+|++|. ++.+|. + ...+....|++++|.|..+|..+..++.|+.|+++.|. +...|..+..|.+|-.|+
T Consensus        52 ~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence            3444445555532 333432 2 22224455555555555555555555555555555544 233444444444444444


Q ss_pred             ecC
Q 038130          332 LHG  334 (526)
Q Consensus       332 l~~  334 (526)
                      ..+
T Consensus       130 s~~  132 (177)
T KOG4579|consen  130 SPE  132 (177)
T ss_pred             CCC
Confidence            444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.04  E-value=0.0005  Score=73.90  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=82.1

Q ss_pred             cccceeeccccc-cccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCC
Q 038130          350 ASNSTLYAKGTA-AKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEK  428 (526)
Q Consensus       350 ~L~~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~  428 (526)
                      +|+ +|++++.. +...-|..++.++|+|++|.+.+....+..       -..+..-.|+|..||+|+++++.       
T Consensus       123 nL~-~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-------F~~lc~sFpNL~sLDIS~TnI~n-------  187 (699)
T KOG3665|consen  123 NLQ-HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-------FSQLCASFPNLRSLDISGTNISN-------  187 (699)
T ss_pred             hhh-hcCccccchhhccHHHHHhhhCcccceEEecCceecchh-------HHHHhhccCccceeecCCCCccC-------
Confidence            455 66665542 223445566777788888888432111110       00112223489999998886543       


Q ss_pred             CCcccccHHHhccCCCCEecccCCccCCcCC---C--ccccccccccccccccccC----------CCCCCCCEEeccCC
Q 038130          429 NNFERIPESIIQLSRLVVLNLNYCERLQSLP---K--LPFNLQGIFAHHCTALSSI----------SYKSSTQLFDLSDN  493 (526)
Q Consensus       429 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp---~--~~~~L~~L~l~~c~~L~~l----------~~~~~L~~L~l~~c  493 (526)
                           + .++++|++|+.|.+.+-. ...-.   .  .+.+|+.|+++.-.....-          ..+|.|+.||.++.
T Consensus       188 -----l-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  188 -----L-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             -----c-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence                 2 477788888888877653 22222   1  1457788888753322221          14899999999974


Q ss_pred             CCCCHHHHHHHHHHHHhhhHHh
Q 038130          494 FKLDRNAVRIIVEDALQDIQLM  515 (526)
Q Consensus       494 ~~l~~~~~~~~~~~~~~~~~~~  515 (526)
                       .+++...+.+++ +.|+++-+
T Consensus       261 -di~~~~le~ll~-sH~~L~~i  280 (699)
T KOG3665|consen  261 -DINEEILEELLN-SHPNLQQI  280 (699)
T ss_pred             -chhHHHHHHHHH-hCccHhhh
Confidence             666666666655 44444443

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=97.02  E-value=0.00058  Score=54.71  Aligned_cols=93  Identities=27%  Similarity=0.474  Sum_probs=69.0

Q ss_pred             EEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHHHHHH
Q 038130           16 VFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKIVECR   94 (526)
Q Consensus        16 ~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i~~~~   94 (526)
                      |||||+.+|  .-+...+...|...|+.+|.|.+++.|+++...|.+...+.-.. +++...++.+.|...||..+.+  
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            799999999  55999999999999999999988888888888888888887777 5556778888899889888843  


Q ss_pred             hhCCCeEEEEEee--ccchhhh
Q 038130           95 TNYGQIVVAVCYR--VEPSHVR  114 (526)
Q Consensus        95 ~~~~~~il~~sY~--~Lp~~lk  114 (526)
                        ....|+|+..+  .+|..++
T Consensus        77 --~~~~iipv~~~~~~~p~~l~   96 (102)
T PF13676_consen   77 --RGKPIIPVRLDPCELPGPLR   96 (102)
T ss_dssp             --TSESEEEEECSGGGS-GGGG
T ss_pred             --CCCEEEEEEECCcCCCHHHH
Confidence              22358888543  4565554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.0011  Score=61.82  Aligned_cols=207  Identities=18%  Similarity=0.149  Sum_probs=107.3

Q ss_pred             cCCCcEEeeCCCCCCCcCCC---C-CCCCcccEEEecccCCc---ccCccccCCCCCCEEeccCCccCcccCcCCCCCCC
Q 038130          254 LEFLKKLNLLGCSKLKRLPE---F-SSSGKIEEIWLDGTAIE---ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKS  326 (526)
Q Consensus       254 l~~L~~L~l~~~~~~~~lp~---~-~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~  326 (526)
                      ...+..|.+.+|. +....+   + .....++.|||.+|.|+   ++-.-+.+|++|++|+|+.|.+...+-..-..+.+
T Consensus        44 ~ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            4445566666653 333222   3 24567799999999987   45455788999999999988643322111024568


Q ss_pred             CcEEeecCCCCC-CcCCCcccCcccccceeeccccccccccC---hhhhcccCCcceEEcccCCCCCCCCCCCCCcccCc
Q 038130          327 LKLLNLHGCSNL-QRLPDDFGNLEASNSTLYAKGTAAKREVP---SSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL  402 (526)
Q Consensus       327 L~~L~l~~~~~~-~~lp~~~~~l~~L~~~L~l~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  402 (526)
                      |++|-+.+.... ......+..++.++ .|+++.|++ ..+-   ..+..+.+.+++|.+    .+|.......  ...+
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vt-elHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~----~~c~~~~w~~--~~~l  194 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVT-ELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQ----LPCLEQLWLN--KNKL  194 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhh-hhhhccchh-hhhccccccccccchhhhhhhc----CCcHHHHHHH--HHhH
Confidence            888888762211 12223355566666 676666633 1111   011112234555555    3332111110  1113


Q ss_pred             ccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC-----ccccccccccccccccc
Q 038130          403 DGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK-----LPFNLQGIFAHHCTALS  477 (526)
Q Consensus       403 ~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-----~~~~L~~L~l~~c~~L~  477 (526)
                      ....|++..+.+..|.+....          -......+|.+--|+|+.+ .++++..     -++.|..|.+.+.|-..
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s----------~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTES----------SEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HhhcccchheeeecCcccchh----------hcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence            344456777777666554311          0112233455555666654 3443332     25677777777776666


Q ss_pred             cCC
Q 038130          478 SIS  480 (526)
Q Consensus       478 ~l~  480 (526)
                      .+.
T Consensus       264 ~l~  266 (418)
T KOG2982|consen  264 PLR  266 (418)
T ss_pred             ccc
Confidence            654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.51  E-value=0.0016  Score=59.85  Aligned_cols=188  Identities=16%  Similarity=0.118  Sum_probs=104.7

Q ss_pred             cccCCCcEEeeCCCCCCCcC----C-CCCCCCcccEEEecccCCc----ccCc-------cccCCCCCCEEeccCCccCc
Q 038130          252 LHLEFLKKLNLLGCSKLKRL----P-EFSSSGKIEEIWLDGTAIE----ELPS-------SIGCLSRLLYLYLSDCKRLK  315 (526)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~l----p-~~~~l~~L~~L~L~~~~i~----~lp~-------~i~~L~~L~~L~L~~~~~~~  315 (526)
                      .-+..+..++||+|.+.+.-    . .+.+-.+|+.-+++.--..    .+|+       .+-++++|+..+|+.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            34678899999998765432    1 2566677888877743221    3443       35678999999999998776


Q ss_pred             ccCcC----CCCCCCCcEEeecCCCCCCcCCC-cc-------------cCcccccceeeccccccccccChh-----hhc
Q 038130          316 SLPSS----LSQLKSLKLLNLHGCSNLQRLPD-DF-------------GNLEASNSTLYAKGTAAKREVPSS-----IVG  372 (526)
Q Consensus       316 ~lp~~----i~~l~~L~~L~l~~~~~~~~lp~-~~-------------~~l~~L~~~L~l~~~~~~~~~~~~-----l~~  372 (526)
                      ..|+.    |++-+.|.||.+++|. ++.+.. .+             .+-+.|+ ......|.+ ...+..     +..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le-~vicgrNRl-engs~~~~a~~l~s  183 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLE-VVICGRNRL-ENGSKELSAALLES  183 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCce-EEEeccchh-ccCcHHHHHHHHHh
Confidence            66654    5677889999998863 322211 11             2334455 666666655 333321     222


Q ss_pred             ccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130          373 SNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       373 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                      . .+|+++.+..|......+...  ....+. .+.+|+.|+|..|-++-.       .-..+...+...+.|+.|.+.+|
T Consensus       184 h-~~lk~vki~qNgIrpegv~~L--~~~gl~-y~~~LevLDlqDNtft~~-------gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         184 H-ENLKEVKIQQNGIRPEGVTML--AFLGLF-YSHSLEVLDLQDNTFTLE-------GSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             h-cCceeEEeeecCcCcchhHHH--HHHHHH-HhCcceeeeccccchhhh-------hHHHHHHHhcccchhhhccccch
Confidence            2 567777775542111111000  000011 223777888777755421       00012233445566778888777


Q ss_pred             c
Q 038130          453 E  453 (526)
Q Consensus       453 ~  453 (526)
                      -
T Consensus       253 l  253 (388)
T COG5238         253 L  253 (388)
T ss_pred             h
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.44  E-value=0.0058  Score=53.91  Aligned_cols=54  Identities=26%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             cEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130          281 EEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       281 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~  335 (526)
                      ..+||++|.+..++ .+..++.|.+|.+++|.++..-|.--..+++|+.|.+.+|
T Consensus        45 d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            45555555555443 2445555555555555533333322223445555555553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.28  E-value=0.0055  Score=54.04  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccC-CCCCCEEeccCCccC--cccCcCCCCCCCCcEEe
Q 038130          255 EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGC-LSRLLYLYLSDCKRL--KSLPSSLSQLKSLKLLN  331 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~  331 (526)
                      .....+||++| .+..++.+..+..|..|.+++|.|+.+-..+.. +++|..|.|.+|.+.  +.+- .+..+++|++|.
T Consensus        42 d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLT  119 (233)
T ss_pred             cccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceee
Confidence            45567777775 366667777777778888888888776655543 456788888776532  2222 255677778877


Q ss_pred             ecCCCCCCcC---CCcccCcccccceeecccc
Q 038130          332 LHGCSNLQRL---PDDFGNLEASNSTLYAKGT  360 (526)
Q Consensus       332 l~~~~~~~~l---p~~~~~l~~L~~~L~l~~~  360 (526)
                      +-+|.....-   -..+.++++|+ .||+..-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~-~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLR-TLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcce-Eeehhhh
Confidence            7765432211   12366677777 7777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.24  E-value=0.0017  Score=59.71  Aligned_cols=208  Identities=19%  Similarity=0.192  Sum_probs=123.6

Q ss_pred             hcCcceEEEeccCCCCCC----CChhccccCCCcEEeeCCCCCCCc------------CCCCCCCCcccEEEecccCCc-
Q 038130          229 IVNTLVILNLSEYVSLNS----LPAEILHLEFLKKLNLLGCSKLKR------------LPEFSSSGKIEEIWLDGTAIE-  291 (526)
Q Consensus       229 ~~~~l~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~------------lp~~~~l~~L~~L~L~~~~i~-  291 (526)
                      ....++.+++++|..-+.    +...+.+-++|++.+++.-. ...            +|.+.++++|+..+||.|.+. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            356788999999765443    33445667889999888632 211            234678899999999999887 


Q ss_pred             ccCc----cccCCCCCCEEeccCCccCcccCc--------------CCCCCCCCcEEeecCCCCCCcCCCc-----ccCc
Q 038130          292 ELPS----SIGCLSRLLYLYLSDCKRLKSLPS--------------SLSQLKSLKLLNLHGCSNLQRLPDD-----FGNL  348 (526)
Q Consensus       292 ~lp~----~i~~L~~L~~L~L~~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~~~~~lp~~-----~~~l  348 (526)
                      ..|+    .|..-+.|.+|.+++|.. +.+..              -+.+-+.|++.....|. +...|..     +..-
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh  184 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH  184 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence            4443    366778899999998873 32211              13456788888887743 3333321     2222


Q ss_pred             ccccceeeccccccccc-----cChhhhcccCCcceEEcccCCCCCCCCCCCCCcccC--cccccCcccEEEccCCCCCC
Q 038130          349 EASNSTLYAKGTAAKRE-----VPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP--LDGLHTTLTSLYLNYCGILE  421 (526)
Q Consensus       349 ~~L~~~L~l~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~  421 (526)
                      ..|. .+.+..|.+-..     +-.+++.. .+|+.|++..|..     +..+...+.  +... +.|+.|.+..|-++.
T Consensus       185 ~~lk-~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtf-----t~~gS~~La~al~~W-~~lrEL~lnDClls~  256 (388)
T COG5238         185 ENLK-EVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTF-----TLEGSRYLADALCEW-NLLRELRLNDCLLSN  256 (388)
T ss_pred             cCce-eEEeeecCcCcchhHHHHHHHHHHh-Ccceeeeccccch-----hhhhHHHHHHHhccc-chhhhccccchhhcc
Confidence            3455 777777766211     11233444 8899999965511     111111100  1112 268889988887543


Q ss_pred             CCCccCCCCcccccHHHh--ccCCCCEecccCCcc
Q 038130          422 LPDSLEKNNFERIPESII--QLSRLVVLNLNYCER  454 (526)
Q Consensus       422 lp~~l~~~~l~~lp~~l~--~l~~L~~L~L~~~~~  454 (526)
                             -+...+-..+.  ..|+|..|...+|..
T Consensus       257 -------~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         257 -------EGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             -------ccHHHHHHHhhhhcCCCccccccchhhh
Confidence                   12222222222  368888888888853

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.97  E-value=0.0032  Score=57.75  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=53.0

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEeccc--CCc-ccCccccCCCCCCEEeccCCccC--cccCcCCCCCC
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGT--AIE-ELPSSIGCLSRLLYLYLSDCKRL--KSLPSSLSQLK  325 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~--~~lp~~i~~l~  325 (526)
                      ...+..|+.|.+.++ .++.+..+..+++|++|.++.|  ++. .++....++++|++|++++|++.  ..++. +..+.
T Consensus        39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELE  116 (260)
T ss_pred             cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhc
Confidence            344566666766664 3555566777778888888877  444 55555566688888888887632  12222 44566


Q ss_pred             CCcEEeecCCC
Q 038130          326 SLKLLNLHGCS  336 (526)
Q Consensus       326 ~L~~L~l~~~~  336 (526)
                      +|..|++.+|.
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            66677776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.90  E-value=0.0053  Score=56.41  Aligned_cols=57  Identities=26%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             CcccEEEecccCCcccCccccCCCCCCEEeccCC--ccCcccCcCCCCCCCCcEEeecCC
Q 038130          278 GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC--KRLKSLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       278 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~  335 (526)
                      ..|+.|++.+..++++- .+-.|++|++|.++.|  +....++-...++++|++|++++|
T Consensus        43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            33444444443333221 2334555666666555  333333333344456666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0044  Score=33.94  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=10.2

Q ss_pred             ccEEEecccCCcccCcccc
Q 038130          280 IEEIWLDGTAIEELPSSIG  298 (526)
Q Consensus       280 L~~L~L~~~~i~~lp~~i~  298 (526)
                      |++|++++|.++.+|.+|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.82  E-value=0.0019  Score=67.45  Aligned_cols=182  Identities=21%  Similarity=0.210  Sum_probs=93.1

Q ss_pred             CCCCCEEeccCCccCcc--cCcCCCCCCCCcEEeecCC-CCCCcCC----CcccCcccccceeeccccc-cccccChhhh
Q 038130          300 LSRLLYLYLSDCKRLKS--LPSSLSQLKSLKLLNLHGC-SNLQRLP----DDFGNLEASNSTLYAKGTA-AKREVPSSIV  371 (526)
Q Consensus       300 L~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~  371 (526)
                      ++.|+.|.+.+|.....  +-......++|+.|++++| ......+    .....+..|+ .++++.+. ++...-..+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLK-SLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcC-ccchhhhhccCchhHHHHH
Confidence            45666666665544333  2222445666666666652 2222111    1122334555 66776665 4334444455


Q ss_pred             cccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccC
Q 038130          372 GSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY  451 (526)
Q Consensus       372 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~  451 (526)
                      ..+++|+.|.+    ..|..+...+...  +...+++|++|+|++|....         -..+.....++++|+.|.+..
T Consensus       266 ~~c~~L~~L~l----~~c~~lt~~gl~~--i~~~~~~L~~L~l~~c~~~~---------d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSL----SNCSNLTDEGLVS--IAERCPSLRELDLSGCHGLT---------DSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEcc----CCCCccchhHHHH--HHHhcCcccEEeeecCccch---------HHHHHHHHHhCcchhhhhhhh
Confidence            54678888887    6665433333222  22334478899988886321         012333344567766666554


Q ss_pred             Ccc---CCcCC-----Ccc-ccccccccccccccccCCC----CCCCC-EEeccCCCCCC
Q 038130          452 CER---LQSLP-----KLP-FNLQGIFAHHCTALSSISY----KSSTQ-LFDLSDNFKLD  497 (526)
Q Consensus       452 ~~~---l~~lp-----~~~-~~L~~L~l~~c~~L~~l~~----~~~L~-~L~l~~c~~l~  497 (526)
                      +..   ++.+-     ... -.+..+.+.+|+.++.+..    ..... .+.+.+||+++
T Consensus       331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~  390 (482)
T KOG1947|consen  331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT  390 (482)
T ss_pred             cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc
Confidence            432   22211     112 2566666667777666541    22222 57778888884

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.00095  Score=61.53  Aligned_cols=97  Identities=23%  Similarity=0.282  Sum_probs=68.0

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCc--cccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPS--SIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~  309 (526)
                      +.+.|+..+|. +..+.- ...++.|++|.|+-| .+..+..+..+.+|+.|+|..|.|..+.+  .+.+|++|+.|.|.
T Consensus        20 ~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCC-ccHHHH-HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            44667777743 333332 346888999999885 46777778888889999999888886643  46788888888888


Q ss_pred             CCccCcccCcC-----CCCCCCCcEEe
Q 038130          310 DCKRLKSLPSS-----LSQLKSLKLLN  331 (526)
Q Consensus       310 ~~~~~~~lp~~-----i~~l~~L~~L~  331 (526)
                      .|...+.-+..     +.-|++|+.||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            87765554432     45577777775

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.0015  Score=60.31  Aligned_cols=64  Identities=25%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             hhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC---CCCCCCcccEEEeccc
Q 038130          222 KDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP---EFSSSGKIEEIWLDGT  288 (526)
Q Consensus       222 ~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp---~~~~l~~L~~L~L~~~  288 (526)
                      +|+.-......+++|.|+- +.+..+.. +..|++|+.|.|..|. +..+.   .+.++++||.|+|..|
T Consensus        32 ~DIsic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   32 DDISICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             cHHHHHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence            3444444445556666665 23334433 4456666666665543 33332   2455555666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.27  E-value=0.022  Score=31.11  Aligned_cols=21  Identities=48%  Similarity=0.543  Sum_probs=13.6

Q ss_pred             CCCEEeccCCccCcccCcCCCC
Q 038130          302 RLLYLYLSDCKRLKSLPSSLSQ  323 (526)
Q Consensus       302 ~L~~L~L~~~~~~~~lp~~i~~  323 (526)
                      +|++|++++|.+. .+|.++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777544 67766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.27  E-value=0.062  Score=30.70  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHH
Q 038130          482 KSSTQLFDLSDNFKLDRNAVRIIV  505 (526)
Q Consensus       482 ~~~L~~L~l~~c~~l~~~~~~~~~  505 (526)
                      +++|++|+|++|++++..+...+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            578999999999999999987764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.23  E-value=0.029  Score=28.46  Aligned_cols=16  Identities=31%  Similarity=0.439  Sum_probs=8.1

Q ss_pred             cccEEEccCCCCCCCC
Q 038130          408 TLTSLYLNYCGILELP  423 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp  423 (526)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            6777777777655543

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.01  E-value=0.24  Score=41.15  Aligned_cols=99  Identities=15%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccC-cCCCCCCC
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKS  326 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~  326 (526)
                      |.++.+|+.+.+..  .+..++.  +.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.. . ...++ ..+..+++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccccccccc
Confidence            45566677766653  2444442  555656666666653 444443 355555666666654 2 22222 23444666


Q ss_pred             CcEEeecCCCCCCcCC-CcccCcccccceeecc
Q 038130          327 LKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAK  358 (526)
Q Consensus       327 L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~  358 (526)
                      |+.+.+..+  +..++ ..+.+. .++ .+.+.
T Consensus        83 l~~i~~~~~--~~~i~~~~f~~~-~l~-~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN--ITEIGSSSFSNC-NLK-EINIP  111 (129)
T ss_dssp             ECEEEETTT---BEEHTTTTTT--T---EEE-T
T ss_pred             ccccccCcc--ccEEchhhhcCC-Cce-EEEEC
Confidence            666666542  22222 234444 455 55444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.71  E-value=0.021  Score=59.58  Aligned_cols=166  Identities=21%  Similarity=0.186  Sum_probs=95.3

Q ss_pred             CCCCCcEEeecCCCCCCc--CCCcccCcccccceeecccc-ccccccC---hhhhcccCCcceEEcccCCCCCCCCCCCC
Q 038130          323 QLKSLKLLNLHGCSNLQR--LPDDFGNLEASNSTLYAKGT-AAKREVP---SSIVGSNNNLYELSLDRSWGGDKQMGLSS  396 (526)
Q Consensus       323 ~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~~L~l~~~-~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~  396 (526)
                      ..+.|+.|.+..|..+..  +-......+.|+ .|+++++ ......+   ..+...+.+|+.|++    ..|..+...+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l----~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLE-ELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL----SGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhh-eecccCcccccccchhHhhhhhhhcCCcCccch----hhhhccCchh
Confidence            478899999998877665  334456777888 8998873 2111122   234455588899999    4444322222


Q ss_pred             CcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcC--C---Ccccccccccc
Q 038130          397 PITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSL--P---KLPFNLQGIFA  470 (526)
Q Consensus       397 ~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l--p---~~~~~L~~L~l  470 (526)
                      ...  +...+++|+.|.+.+|. ++.          ..+-.....+++|++|+|++|..+..-  .   ...++|+.|.+
T Consensus       261 l~~--l~~~c~~L~~L~l~~c~~lt~----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  261 LSA--LASRCPNLETLSLSNCSNLTD----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHH--HHhhCCCcceEccCCCCccch----------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            111  22335599999988876 222          123334457899999999999765321  1   11334444433


Q ss_pred             cc---ccccccCC-----C-C-CCCCEEeccCCCCCCHHHHHHHH
Q 038130          471 HH---CTALSSIS-----Y-K-SSTQLFDLSDNFKLDRNAVRIIV  505 (526)
Q Consensus       471 ~~---c~~L~~l~-----~-~-~~L~~L~l~~c~~l~~~~~~~~~  505 (526)
                      ..   |+.++.+.     . . -.+..+.+.+|++++........
T Consensus       329 ~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  329 LSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             hhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            33   33344432     1 1 15666666667666666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.70  E-value=0.014  Score=51.53  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc-----CCCccccccccccccccccccCC--
Q 038130          408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS-----LPKLPFNLQGIFAHHCTALSSIS--  480 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-----lp~~~~~L~~L~l~~c~~L~~l~--  480 (526)
                      .++.++-+++.+...       +    -+.+..++.++.|.+.+|+.+..     +-...++|+.|+|++|+.+++-.  
T Consensus       102 ~IeaVDAsds~I~~e-------G----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~  170 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE-------G----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA  170 (221)
T ss_pred             eEEEEecCCchHHHH-------H----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence            577788777754320       0    12455778888889999985443     44567899999999999888754  


Q ss_pred             ---CCCCCCEEeccCCCCCCHHH-HHHHHHHHHhhhHHhh
Q 038130          481 ---YKSSTQLFDLSDNFKLDRNA-VRIIVEDALQDIQLMA  516 (526)
Q Consensus       481 ---~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~~  516 (526)
                         .+++|+.|.|.+-|-+.... ....++.++|+.++..
T Consensus       171 ~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~  210 (221)
T KOG3864|consen  171 CLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVG  210 (221)
T ss_pred             HHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceec
Confidence               58899999999987665443 3445677788877764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.74  E-value=0.078  Score=26.86  Aligned_cols=12  Identities=8%  Similarity=0.230  Sum_probs=3.5

Q ss_pred             ccEEEecccCCc
Q 038130          280 IEEIWLDGTAIE  291 (526)
Q Consensus       280 L~~L~L~~~~i~  291 (526)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            333334333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=0.069  Score=47.33  Aligned_cols=63  Identities=24%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccc-cHHHhccCCCCEecccCCc
Q 038130          375 NNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERI-PESIIQLSRLVVLNLNYCE  453 (526)
Q Consensus       375 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~  453 (526)
                      +.++.|.+    ..|..+..-....  +.+..++|+.|+|++|.           +++.- -.++..+++|+.|.|.+-+
T Consensus       125 ~~i~~l~l----~~ck~~dD~~L~~--l~~~~~~L~~L~lsgC~-----------rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  125 RSIKSLSL----ANCKYFDDWCLER--LGGLAPSLQDLDLSGCP-----------RITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             chhhhhee----ccccchhhHHHHH--hcccccchheeeccCCC-----------eechhHHHHHHHhhhhHHHHhcCch
Confidence            45555555    5555443322211  22344589999999885           44422 2477788899988888765


Q ss_pred             c
Q 038130          454 R  454 (526)
Q Consensus       454 ~  454 (526)
                      .
T Consensus       188 ~  188 (221)
T KOG3864|consen  188 Y  188 (221)
T ss_pred             h
Confidence            3

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.83  E-value=1.9  Score=35.55  Aligned_cols=95  Identities=17%  Similarity=0.290  Sum_probs=54.2

Q ss_pred             cceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130          232 TLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY  307 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~  307 (526)
                      .++.+.+..  .+..++ ..|..++.|+.+.+.++  +..++.  +..+..++.+.+.. .+..++. .+..+.+|+.++
T Consensus        13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            567777764  344444 44777889999999873  666664  77887899999976 5555554 467789999999


Q ss_pred             ccCCccCcccC-cCCCCCCCCcEEeecC
Q 038130          308 LSDCKRLKSLP-SSLSQLKSLKLLNLHG  334 (526)
Q Consensus       308 L~~~~~~~~lp-~~i~~l~~L~~L~l~~  334 (526)
                      +..+  ...++ ..+.+. +|+.+.+..
T Consensus        88 ~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cCcc--ccEEchhhhcCC-CceEEEECC
Confidence            9764  33333 345666 888888765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.43  E-value=0.025  Score=51.06  Aligned_cols=80  Identities=18%  Similarity=0.098  Sum_probs=34.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ...++||++.+. +..+...++-+..|..|+++.+. +..+| ++.+...++.+++..|..+..|.+++.+++++++++.
T Consensus        42 kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   42 KRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            344445544422 22222233334444444444422 23333 2444444444444444444555555555555555554


Q ss_pred             CCc
Q 038130          310 DCK  312 (526)
Q Consensus       310 ~~~  312 (526)
                      ++.
T Consensus       120 ~~~  122 (326)
T KOG0473|consen  120 KTE  122 (326)
T ss_pred             cCc
Confidence            443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.20  E-value=0.51  Score=26.76  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=10.2

Q ss_pred             CcccEEEecccCCcccCcc
Q 038130          278 GKIEEIWLDGTAIEELPSS  296 (526)
Q Consensus       278 ~~L~~L~L~~~~i~~lp~~  296 (526)
                      .+|++|+|++|.|+.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.20  E-value=0.51  Score=26.76  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=10.2

Q ss_pred             CcccEEEecccCCcccCcc
Q 038130          278 GKIEEIWLDGTAIEELPSS  296 (526)
Q Consensus       278 ~~L~~L~L~~~~i~~lp~~  296 (526)
                      .+|++|+|++|.|+.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.37  E-value=0.027  Score=50.89  Aligned_cols=85  Identities=14%  Similarity=0.046  Sum_probs=71.7

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      +..+....+||++.|.....-..++-+..+..|+++.|.+..+|..++.+..++.+++..|. ....|.+.+.++.++.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence            55688899999998764443345778888899999999999999999999999999998765 77899999999999999


Q ss_pred             eecCCC
Q 038130          331 NLHGCS  336 (526)
Q Consensus       331 ~l~~~~  336 (526)
                      ++..+.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            988754

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.59  E-value=1  Score=25.58  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=12.6

Q ss_pred             CcccEEEccCCCCCCCC
Q 038130          407 TTLTSLYLNYCGILELP  423 (526)
Q Consensus       407 ~~L~~L~L~~~~~~~lp  423 (526)
                      ++|+.|++++|+++++|
T Consensus         2 ~~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        2 PSLKELNVSNNQLTSLP   18 (26)
T ss_pred             cccceeecCCCccccCc
Confidence            37888888888776665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.10  E-value=1.4  Score=24.28  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=14.9

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHH
Q 038130          482 KSSTQLFDLSDNFKLDRNAVRII  504 (526)
Q Consensus       482 ~~~L~~L~l~~c~~l~~~~~~~~  504 (526)
                      +++|++|+|++|. ++......+
T Consensus         1 ~~~L~~L~l~~n~-i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQ-ITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSB-EHHHHHHHH
T ss_pred             CCCCCEEEccCCc-CCHHHHHHh
Confidence            4789999999997 777766554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	526
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		8e-19
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-16

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSI-YII 72
           DVFLSF+G DTR NF S LY  L ++ I TF  + +L+ G   S  L   +EVS    ++
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69
Query: 73  FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER 130
            SE+ A+SSWCLDEL+ I++        V+ + Y VEP+HVR Q G   + F K   R
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSLGDAVEVSSIYI-I 72
           +VFLSF+G DTR+ FT  LY +L +  I TF  +D L +G EI  +L  A++ S IY+ I
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96
Query: 73  FSESDASSSWCLDELLKIVECR-TNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF 131
            S   A S WCL EL +IV  +  +  +I++ + Y V+PS VR Q G ++ +F K   +F
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-57
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	8e-56
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  188 bits (480), Expect = 2e-57
 Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)

Query: 1   MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFI-GNDLKRGDEISQS 59
           M+S ++      + DVFLSF+G DTR NF S LY  L ++ I TF    +L+ G   S  
Sbjct: 1   MSSHTA-----TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 60  LGDAVEVSSIYI-IFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIG 118
           L   +EVS   + + SE+ A+SSWCLDEL+ I++        V+ + Y VEP+HVR Q G
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 119 SFEDSFSKLEERF-PDKMQ 136
              + F K   R  P+K+ 
Sbjct: 116 VLAEQFKKHASREDPEKVL 134

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  185 bits (471), Expect = 8e-56
 Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 4/139 (2%)

Query: 2   ASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSL 60
           +++ S  F     +VFLSF+G DTR+ FT  LY +L +  I TF  +D L +G EI  +L
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 61  GDAVEVSSIYI-IFSESDASSSWCLDELLKIVECR-TNYGQIVVAVCYRVEPSHVRKQIG 118
             A++ S IY+ I S   A S WCL EL +IV  +  +  +I++ + Y V+PS VR Q G
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 119 SFEDSFSKLEERF-PDKMQ 136
            ++ +F K   +F    +Q
Sbjct: 144 CYKKAFRKHANKFDGQTIQ 162

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  166 bits (423), Expect = 1e-49
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 2   ASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFI-GNDLKRGDEISQSL 60
            ++++       +D+F+S   ED + +F   L   L     E +     L+ GD + +S+
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  GDAVEVSSIYI-IFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGS 119
              +  S   I + S       W   EL  + +  ++    ++ + ++V    V     +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 120 FEDSFSKLEERF 131
             D  +      
Sbjct: 128 MADKLAFNTSTK 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (307), Expect = 4e-31
 Identities = 64/269 (23%), Positives = 93/269 (34%), Gaps = 49/269 (18%)

Query: 215 CSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-E 273
              L    D+ E       V L L     L   P +   L  L+ + +   + L  LP  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTI-DAAGLMELPDT 122

Query: 274 FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQ---------L 324
                 +E + L    +  LP+SI  L+RL  L +  C  L  LP  L+          L
Sbjct: 123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 325 KSLKLLNLHGCSNLQRLPDDFGN------LEASNSTLYAKGTAAKREVPSSIVGSNNNLY 378
            +L+ L L   + ++ LP    N      L+  NS L          +  +I      L 
Sbjct: 183 VNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPL--------SALGPAI-HHLPKLE 232

Query: 379 ELSLDRSWGGDKQMGLSSPITLPLD-GLHTTLTSLYLNYCGILELPDSLEKNNFERIPES 437
           EL L          G ++    P   G    L  L L  C           +N   +P  
Sbjct: 233 ELDLR---------GCTALRNYPPIFGGRAPLKRLILKDC-----------SNLLTLPLD 272

Query: 438 IIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
           I +L++L  L+L  C  L  LP L   L 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 5e-29
 Identities = 56/243 (23%), Positives = 85/243 (34%), Gaps = 57/243 (23%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE----------FSSSGKIEE 282
           L  L L+    L +LPA I  L  L++L++  C +L  LPE                ++ 
Sbjct: 129 LETLTLA-RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 283 IWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP 342
           + L+ T I  LP+SI  L  L  L + +   L +L  ++  L  L+ L+L GC+ L+  P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 343 DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL 402
             FG        L  K  +    +P  I    + L                         
Sbjct: 247 PIFGGRA-PLKRLILKDCSNLLTLPLDI----HRL------------------------- 276

Query: 403 DGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462
               T L  L L  C            N  R+P  I QL    ++ +    + Q     P
Sbjct: 277 ----TQLEKLDLRGC-----------VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 463 FNL 465
              
Sbjct: 322 VAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 4e-28
 Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 61/295 (20%)

Query: 232 TLVILNLSEYVSLNSLPAEILHLEFLK-------------------KLNLLGCSKLKRLP 272
               L      +L      +   +                      ++       LK   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 273 ---EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL 329
              E ++      + L    + + P     LS L ++ +     L  LP ++ Q   L+ 
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLET 131

Query: 330 LNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSI--------VGSNNNLYELS 381
           L L     L+ LP    +L      L  +      E+P  +             NL  L 
Sbjct: 132 LTLARN-PLRALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 382 LDRSWGGDKQMGLSSPITLPLD-GLHTTLTSLYLNYCGILELPDSLEK------------ 428
           L+ +       G+ S   LP        L SL +    +  L  ++              
Sbjct: 190 LEWT-------GIRS---LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

Query: 429 NNFERIPESIIQLSRLVVLNLNYCERLQSLP----KLPFNLQGIFAHHCTALSSI 479
                 P      + L  L L  C  L +LP    +L   L+ +    C  LS +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 8e-18
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 29/184 (15%)

Query: 290 IEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE 349
           +          S    LY      L+     LSQ +     + +   +  R  +      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----- 55

Query: 350 ASNSTLYAKGTAAKREVPSSI-VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD-GLHT 407
            +N  +  +   A +     +   +      L L           L      P      +
Sbjct: 56  -NNPQIETRTGRALKATADLLEDATQPGRVALELRSV-------PLPQ---FPDQAFRLS 104

Query: 408 TLTSLYLNYCGILELPDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQ 456
            L  + ++  G++ELPD+           L +N    +P SI  L+RL  L++  C  L 
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164

Query: 457 SLPK 460
            LP+
Sbjct: 165 ELPE 168

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 61/245 (24%), Positives = 89/245 (36%), Gaps = 45/245 (18%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  L +S    L SLP     L  L   +    + L  LP       + ++W+ G  +  
Sbjct: 83  LRTLEVS-GNQLTSLPVLPPGLLELSIFS-NPLTHLPALPS-----GLCKLWIFGNQLTS 135

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE--- 349
           LP     L     L +SD  +L SLP+  S+L  L   N      L  LP     L+   
Sbjct: 136 LPVLPPGLQ---ELSVSDN-QLASLPALPSELCKLWAYNNQ----LTSLPMLPSGLQELS 187

Query: 350 ASNSTLYAKGTAAKREVPSSIVG------SNNNLYELSLDRSWGGDKQMGLSS-PITLPL 402
            S++ L          +P+           NN L   SL     G K++ +S   +T  L
Sbjct: 188 VSDNQL--------ASLPTLPSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLTS-L 236

Query: 403 DGLHTTLTSLYLNYCGILELPDSLEK--------NNFERIPESIIQLSRLVVLNLNYCER 454
             L + L  L ++   +  LP             N   R+PES+I LS    +NL     
Sbjct: 237 PVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-P 295

Query: 455 LQSLP 459
           L    
Sbjct: 296 LSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 9e-18
 Identities = 50/218 (22%), Positives = 73/218 (33%), Gaps = 43/218 (19%)

Query: 257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKS 316
              LN+ G S L  LP+      I  + +    +  LP+       L  L +S   +L S
Sbjct: 42  NAVLNV-GESGLTTLPD-CLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGN-QLTS 95

Query: 317 LPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNN 376
           LP     L  L + +    ++L  LP     L    + L          +P         
Sbjct: 96  LPVLPPGLLELSIFSNPL-THLPALPSGLCKLWIFGNQL--------TSLPVLP----PG 142

Query: 377 LYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEK-------- 428
           L ELS+           L+S     L  L + L  L+     +  LP             
Sbjct: 143 LQELSVS-------DNQLAS-----LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD 190

Query: 429 NNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
           N    +P    +L +L   N     RL SLP LP  L+
Sbjct: 191 NQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLK 224

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  L +S    L SLP     L   K+L + G  +L  LP       +  + +    +  
Sbjct: 223 LKELIVS-GNRLTSLPVLPSEL---KELMVSGN-RLTSLPM--LPSGLLSLSVYRNQLTR 275

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQ-LKSLKLLN 331
           LP S+  LS    + L     L        + + S    +
Sbjct: 276 LPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYS 314

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 49/297 (16%), Positives = 105/297 (35%), Gaps = 41/297 (13%)

Query: 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGT 288
             + I  +  Y +L   PA    L+ + KL LL C   K++ L  F ++ K+ ++ LD  
Sbjct: 548 PKIQIFYMG-YNNLEEFPASA-SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605

Query: 289 AIEELPSSIG-CLSRLLYLYLSDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRLPDD- 344
            IEE+P        ++  L  S  K LK +P+  +   +  +  ++      +     + 
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNI 663

Query: 345 FGNLEASNSTLYAKGTAAK---REVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP 401
             +++       +  T +    ++ P+ +  + + +  + L  +           P    
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 402 LDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQLSRLVVLN 448
                  LT++ L +  +  L D              +  N F   P   +  S+L    
Sbjct: 724 YKNT-YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782

Query: 449 LNYCERLQ----------SLPKLPFNLQGIFAHHCTALSSISYKSSTQL--FDLSDN 493
           + +    +           +   P +L  +       +  +  K + QL   D++DN
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSN-DIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 43/270 (15%), Positives = 69/270 (25%), Gaps = 72/270 (26%)

Query: 244 LNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRL 303
           +  +   I  L  L+ +               +    +         E    S   L  L
Sbjct: 437 ITFISKAIQRLTKLQIIYFANS-PFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 304 LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG---------CSNLQRLPDDFGNLEASNST 354
             + L +C  +  LP  L  L  L+ LN+            ++  RL DD          
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP-KIQI 552

Query: 355 LYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL 414
            Y                  NNL E                 P +  L  +   L  L  
Sbjct: 553 FYM---------------GYNNLEEF----------------PASASLQKM-VKLGLLDC 580

Query: 415 NYCGILELPD----------SLEKNNFERIPESIIQ-LSRLVVLNLNYCERLQSLPKLPF 463
            +  +  L             L+ N  E IPE       ++  L  ++  +L+ +P    
Sbjct: 581 VHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPN--- 636

Query: 464 NLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
                 A     +            D S N
Sbjct: 637 ---IFNAKSVYVM---------GSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 29/202 (14%)

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN 352
               +    R+  L L+       +P ++ QL  LK+L+     +       FG+ E + 
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTP 373

Query: 353 STLYAKGTAAKREVPSSIVGSNNNLYELSL--DRSWGGDKQMGLSSPITLPLDGLH---- 406
                +    +       +  +  L    L  D      +   +     + L        
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 407 --------------TTLTSLYLNYCGILELPDSLEK--------NNFERIPESIIQLSRL 444
                         T L  +Y           +++           +E    S   L  L
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 445 VVLNLNYCERLQSLPKLPFNLQ 466
             + L  C  +  LP   ++L 
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLP 515

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 36/300 (12%), Positives = 83/300 (27%), Gaps = 58/300 (19%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNL--------------------LGCSKLKRLP 272
           +  L+L+ + +   +P  I  L  LK L+                     +   +  R+ 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 273 ------EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK------RLKSLPSS 320
                       ++    L   AI   P  +  + +   + L D +      R+  +  +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 321 LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYEL 380
           + +L  L+++                  +A++                S   +  +L ++
Sbjct: 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYEN-----EELSW-SNLKDLTDV 496

Query: 381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQ 440
            L             + +   L  L   L SL +     +         ++ R+ +    
Sbjct: 497 EL-------YNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLK--ADWTRLADDEDT 546

Query: 441 LSRLVVLNLNYCERLQSLPKLPF-----NLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
             ++ +  + Y   L+  P          L  +   H     L +           L  N
Sbjct: 547 GPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLL------GCSKLKRLPE-FSSSGKIEEIWL 285
           L  +++S Y   +S P + L+   LK   +       G   L++ P   ++   + ++ +
Sbjct: 755 LSNMDVS-YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 286 DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334
               I ++   +    +L  L ++D   +    +S+       +  L  
Sbjct: 814 GSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 51/242 (21%), Positives = 82/242 (33%), Gaps = 47/242 (19%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  +      SL  LP   L LE    +       L+ LPE  +   +  I+ D   ++ 
Sbjct: 197 LTAIYAD-NNSLKKLPDLPLSLE---SIVAGNN-ILEELPELQNLPFLTTIYADNNLLKT 251

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN 352
           LP     L  L          L  LP     L  L +      S L  LP +   L AS+
Sbjct: 252 LPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASS 306

Query: 353 STLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL 412
           + +             S+     +L EL++  +        L       L  L   L  L
Sbjct: 307 NEI------------RSLCDLPPSLEELNVSNNK-------LIE-----LPALPPRLERL 342

Query: 413 YLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464
             ++  + E+P+         +E N     P+    +  L + +      L  +P+LP N
Sbjct: 343 IASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS-----HLAEVPELPQN 397

Query: 465 LQ 466
           L+
Sbjct: 398 LK 399

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 54/245 (22%), Positives = 88/245 (35%), Gaps = 50/245 (20%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L I+++    SL  LP     LEF+      G ++L+ LPE  +   +  I+ D  ++++
Sbjct: 155 LKIIDVDNN-SLKKLPDLPPSLEFIA----AGNNQLEELPELQNLPFLTAIYADNNSLKK 209

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE--- 349
           LP     L     +   +   L+ LP  L  L  L  +       L+ LPD   +LE   
Sbjct: 210 LPDLPLSLES---IVAGNNI-LEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALN 263

Query: 350 ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL 409
             ++ L         ++P        +L  L +        +   S      L  L   L
Sbjct: 264 VRDNYL--------TDLPELP----QSLTFLDVS-------ENIFSG-----LSELPPNL 299

Query: 410 TSLYLNYCGILELPDSLEK--------NNFERIPESIIQLSRLVVLNLNYCERLQSLPKL 461
             L  +   I  L D            N    +P       RL  L  ++   L  +P+L
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPEL 355

Query: 462 PFNLQ 466
           P NL+
Sbjct: 356 PQNLK 360

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 58/297 (19%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNL----------------LGCSKLKRLPEFSS 276
           L  L  S   SL  LP     L+ L   N                 +  ++L++LPE  +
Sbjct: 93  LESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 277 SGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS 336
           S  ++ I +D  ++++LP        L ++   + + L+ LP  L  L  L  +      
Sbjct: 152 SSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN- 205

Query: 337 NLQRLPDDFGNLE---ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMG 393
           +L++LPD   +LE   A N+ L         E+P   + +   L  +  D +        
Sbjct: 206 SLKKLPDLPLSLESIVAGNNIL--------EELPE--LQNLPFLTTIYADNNLLKTLPDL 255

Query: 394 LSSPITLPLDGLH-----------TTLTSLYLNYCGILELPDSLEK-----NNFERIPES 437
             S   L +   +           T L      + G+ ELP +L       N    + + 
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD- 314

Query: 438 IIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYK-SSTQLFDLSDN 493
                 L  LN++   +L  LP LP  L+ + A     L+ +     + +   +  N
Sbjct: 315 --LPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYN 367

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 55/289 (19%), Positives = 87/289 (30%), Gaps = 73/289 (25%)

Query: 229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSG---------- 278
           + NT +   L    +L  +P E  +++   +         +  P  +             
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 279 ----KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334
               +  E+ L+   +  LP     L     L  S    L  LP     LKSL + N   
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPPHLE---SLVASCNS-LTELPELPQSLKSLLVDNN-- 121

Query: 335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGL 394
             NL+ L D    LE     L                 SNN L                 
Sbjct: 122 --NLKALSDLPPLLE----YLGV---------------SNNQL----------------- 143

Query: 395 SSPITLPLDGLHTTLTSLYLNYCGILELPDSLEK--------NNFERIPESIIQLSRLVV 446
                LP     + L  + ++   + +LPD            N  E +PE +  L  L  
Sbjct: 144 ---EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTA 199

Query: 447 LNLNYCERLQSLPKLPFNLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
           +  +    L+ LP LP +L+ I A +     L  +            +N
Sbjct: 200 IYADNN-SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 39/241 (16%), Positives = 67/241 (27%), Gaps = 69/241 (28%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  LN+     L  LP     L FL             L E   +  +  +      I  
Sbjct: 259 LEALNVR-DNYLTDLPELPQSLTFLDVSEN----IFSGLSELPPN--LYYLNASSNEIRS 311

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN 352
           L         L  L +S+ K L  LP+   +L+ L        ++L  +P+   NL+   
Sbjct: 312 LCDL---PPSLEELNVSNNK-LIELPALPPRLERLIASF----NHLAEVPELPQNLK--- 360

Query: 353 STLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL 412
             L+                  N L E                 P          ++  L
Sbjct: 361 -QLHV---------------EYNPLREF----------------PDIP------ESVEDL 382

Query: 413 YLNYCGILELPDSLEK--------NNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464
            +N   + E+P+  +         N     P+    +  L + +     R+    +    
Sbjct: 383 RMN-SHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE----RVVDPYEFAHE 437

Query: 465 L 465
            
Sbjct: 438 T 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 24/116 (20%)

Query: 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE 291
           +L  LN+S    L  LPA    LE   +L       L  +PE      ++++ ++   + 
Sbjct: 318 SLEELNVS-NNKLIELPALPPRLE---RLIASFN-HLAEVPE--LPQNLKQLHVEYNPLR 370

Query: 292 ELPSSIGCLSRLL----------------YLYLSDCKRLKSLPSSLSQLKSLKLLN 331
           E P     +  L                  L++     L+  P     ++ L++ +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPESVEDLRMNS 425

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 41/308 (13%), Positives = 83/308 (26%), Gaps = 75/308 (24%)

Query: 232 TLVILNLSEYVSLNSLPAEILHLEF--LKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGT 288
           +             +        +F  L K  +    + K +      + K  +I     
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 289 AIEELPSSIGCLSRLLYLYLSDCK-------------------RLKSLPSSLSQLKSLKL 329
            I  +  ++  L++L   Y+ +                     + K+       LK L  
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 330 LNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389
           + ++ C NL +LP     L                            +  +++  + G  
Sbjct: 254 VEVYNCPNLTKLPTFLKALP--------------------------EMQLINVACNRGIS 287

Query: 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPD-------------SLEKNNFERIPE 436
            +        L    +   +  +Y+ Y  +   P                  N  E    
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 437 SIIQLSRLVVLNLNYCERLQSLP-----KLPFNLQGIFAHHCTALSSI----SYKSSTQL 487
           +     +L  LNL Y  ++  +P          ++ +   H   L  I      KS + +
Sbjct: 348 AFGSEIKLASLNLAYN-QITEIPANFCGFTE-QVENLSFAHN-KLKYIPNIFDAKSVSVM 404

Query: 488 --FDLSDN 493
              D S N
Sbjct: 405 SAIDFSYN 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 6e-15
 Identities = 37/297 (12%), Positives = 83/297 (27%), Gaps = 74/297 (24%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIE 291
              +      ++  +   ++ L  L++  +     +     E   +   E      T   
Sbjct: 185 DTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT--- 240

Query: 292 ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC--SNLQRLPDDFGNLE 349
                   L  L  + + +C  L  LP+ L  L  ++L+N+      + ++L DD+  L 
Sbjct: 241 -EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 350 ASNS-----TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404
            +        +Y                  NNL    ++ S        +          
Sbjct: 300 DAPVGEKIQIIYI---------------GYNNLKTFPVETSLQ-----KMKK-------- 331

Query: 405 LHTTLTSLYLNYCGILELPDSLEK-----------NNFERIPESIIQ-LSRLVVLNLNYC 452
               L  L   Y  +     +              N    IP +      ++  L+  + 
Sbjct: 332 ----LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 453 ERLQSLPKLPF---------------NLQGIFAHHCTAL-SSISYKSSTQLFDLSDN 493
            +L+ +P +                  +  +   +   L  +     +    +LS+N
Sbjct: 388 -KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 69/298 (23%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAI 290
           L +L    Y  L            L  LNL    ++  +P      + ++E +      +
Sbjct: 332 LGMLECL-YNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKL 389

Query: 291 EELPSSIGC--LSRLLYLYLS-------DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRL 341
           + +P+      +S +  +  S       D K    L  +  +  ++  +NL     + + 
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF 448

Query: 342 PDD-FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITL 400
           P + F      + ++                   N L E+                    
Sbjct: 449 PKELFSTGSPLS-SINL---------------MGNMLTEIPK----------NSLKDENE 482

Query: 401 PLDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQLSRLVVL 447
                   LTS+ L +  + +L D              L  N+F + P   +  S L   
Sbjct: 483 NFKNT-YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 448 NLNYCERL----------QSLPKLPFNLQGIFAHHCTALSSISYKSSTQL--FDLSDN 493
            +                + +   P +L  +       +  ++ K +  +   D+ DN
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSN-DIRKVNEKITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 33/275 (12%), Positives = 68/275 (24%), Gaps = 56/275 (20%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           +  L+L  + +   +P  I  L  L+ L L                              
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG------------------EKVNERLF 124

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL--LNLHGCSNLQRLPDDFGNLEA 350
            P  I                 K+      +     L    ++     + +         
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 351 SN--STLYAKGTAAKREVPSSIVG---------SNNNLYELSLDRSWGGDKQMGLSSPIT 399
                 L    T     V  +++           N+     ++  +W  +         T
Sbjct: 185 DTQIGQLSNNIT----FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 400 LPLDGLH-TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSL 458
             L   +   LT + +  C            N  ++P  +  L  + ++N+    R  S 
Sbjct: 241 EDLKWDNLKDLTDVEVYNC-----------PNLTKLPTFLKALPEMQLINVACN-RGISG 288

Query: 459 PKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
            +L  +          AL+        Q+  +  N
Sbjct: 289 EQLKDDW--------QALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 12/125 (9%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLL------GCSKLKRLP-EFSSSGKIEEIWL 285
           LV ++LS Y S +  P + L+   LK   +       G   L+  P   +    + ++ +
Sbjct: 515 LVGIDLS-YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 286 DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-D 344
               I ++   I     +  L + D   +    S +       +  L      Q +   D
Sbjct: 574 GSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY-DKTQDIRGCD 630

Query: 345 FGNLE 349
             +++
Sbjct: 631 ALDIK 635

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 52/236 (22%), Positives = 82/236 (34%), Gaps = 48/236 (20%)

Query: 246 SLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLY 305
           SL  E L +    +L L     L  LP+     +I  + +   A+  LP     L    Y
Sbjct: 51  SLLKECL-INQFSELQL-NRLNLSSLPDNLPP-QITVLEITQNALISLPELPASLE---Y 104

Query: 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE 365
           L   D  RL +LP   + LK L + N    + L  LP+    LE     + A        
Sbjct: 105 LDACDN-RLSTLPELPASLKHLDVDN----NQLTMLPELPALLE----YINADNNQL-TM 154

Query: 366 VPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS 425
           +P        +L  LS+            ++ +T  L  L  +L +L ++   +  LP  
Sbjct: 155 LPELP----TSLEVLSVR-----------NNQLTF-LPELPESLEALDVSTNLLESLPAV 198

Query: 426 ---------------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
                            +N    IPE+I+ L     + L     L S  +   + Q
Sbjct: 199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 7e-15
 Identities = 48/276 (17%), Positives = 89/276 (32%), Gaps = 76/276 (27%)

Query: 229 IVNTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWL 285
           I N   +   S Y +++   A+     +  +K  L G +  +   L +     +  E+ L
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 286 DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF 345
           +   +  LP ++    ++  L ++    L SLP   + L+ L   +      L  LP+  
Sbjct: 67  NRLNLSSLPDNLP--PQITVLEITQN-ALISLPELPASLEYLDACDNR----LSTLPELP 119

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGL 405
            +L+     L                  NN L                      LP   L
Sbjct: 120 ASLK----HLDV---------------DNNQL--------------------TMLP--EL 138

Query: 406 HTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNL 465
              L  +  +             N    +PE     + L VL++    +L  LP+LP +L
Sbjct: 139 PALLEYINADN------------NQLTMLPELP---TSLEVLSVRNN-QLTFLPELPESL 182

Query: 466 QGIFAHHCTALSSI--------SYKSSTQLFDLSDN 493
           + +       L S+          + +   F   +N
Sbjct: 183 EALDVST-NLLESLPAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 7e-11
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 13/131 (9%)

Query: 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTA 289
              L  +N      L  LP     LE    L++    +L  LPE   S  +E + +    
Sbjct: 139 PALLEYINAD-NNQLTMLPELPTSLE---VLSVRNN-QLTFLPELPES--LEALDVSTNL 191

Query: 290 IEELPSSIGCLSRL----LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF 345
           +E LP+            ++    +  R+  +P ++  L     + L     L     + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN-PLSSRIRES 249

Query: 346 GNLEASNSTLY 356
            + + +    +
Sbjct: 250 LSQQTAQPDYH 260

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 42/253 (16%)

Query: 231 NTLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDG 287
           N   I  ++   SL    A +      +K+L+L   + L ++   + +   K+E + L  
Sbjct: 10  NRYKIEKVT-DSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELLNLSS 67

Query: 288 TAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFG- 346
             + E    +  LS L  L L++          L    S++ L+     N+ R+    G 
Sbjct: 68  NVLYETLD-LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANN-NISRVSCSRGQ 120

Query: 347 ---NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD 403
              N+  +N+ +          +     G  + +  L L  +        + +     L 
Sbjct: 121 GKKNIYLANNKI--------TMLRDLDEGCRSRVQYLDLKLN-------EIDTVNFAELA 165

Query: 404 GLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCE 453
               TL  L L Y  I ++             L  N    +       + +  ++L    
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN- 224

Query: 454 RLQSLPKLPFNLQ 466
           +L  + K     Q
Sbjct: 225 KLVLIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 233 LVILNLSEYVSLNSL-----PAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDG 287
           +  L+L      N +            + L+ LNL     +  +       K++ + L  
Sbjct: 146 VQYLDLKL----NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200

Query: 288 TAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334
             +  +       + + ++ L + K L  +  +L   ++L+  +L G
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 54/230 (23%)

Query: 289 AIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDD-FG 346
           AI E+  +    +R     ++D   LK   +S      ++K L+L G   L ++      
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLA 55

Query: 347 NLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITL 400
                     S++ L         E     + S + L  L L+ +        +      
Sbjct: 56  PFTKLELLNLSSNVL--------YETLD--LESLSTLRTLDLNNN-------YVQE---- 94

Query: 401 PLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPE-SIIQLSRLVVLNLN 450
            L     ++ +L+     I  +  S         L  N    + +      SR+  L+L 
Sbjct: 95  -LLVG-PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 451 YCERLQSLPKLPF-----NLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
               + ++           L+ +   +     +      +  +  DLS N
Sbjct: 153 LN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 6e-12
 Identities = 43/241 (17%), Positives = 96/241 (39%), Gaps = 37/241 (15%)

Query: 233 LVILNLSEYVSLN---SLPAEILHLEFLKKLNLLGCSKLKRL-----PEFSSSGKIEEIW 284
           +  L+LS  ++L     +P+ + +L +L  L +     +  L     P  +   ++  ++
Sbjct: 52  VNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYI---GGINNLVGPIPPAIAKLTQLHYLY 107

Query: 285 LDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLP 342
           +  T +   +P  +  +  L+ L  S      +LP S+S L +L  +   G + +   +P
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIP 166

Query: 343 DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL 402
           D +G+     +++         ++P +   +N NL  + L R+        L    ++  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRN-------MLEGDASVLF 217

Query: 403 DGLHTTLTSLYLNYCGI------LELPDSLEK-----NNFE-RIPESIIQLSRLVVLNLN 450
            G       ++L    +      + L  +L       N     +P+ + QL  L  LN++
Sbjct: 218 -GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 451 Y 451
           +
Sbjct: 277 F 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 41/241 (17%), Positives = 68/241 (28%), Gaps = 68/241 (28%)

Query: 293 LPSSIGCLSRLLYLYLSDCK--RLKSLPSSLSQLKSLKLLNLHG--------------CS 336
           L  +     R+  L LS     +   +PSSL+ L  L  L + G               +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 337 NLQRL-----------PDDFGNLEASN-STLYAKGTAAKREVPSSIVGSNNNLYELSLDR 384
            L  L           PD    +      TL     A    +P SI  S  NL  ++ D 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDG 158

Query: 385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGIL-ELPDS----------LEKNNFE- 432
           +        +S  I           TS+ ++   +  ++P +          L +N  E 
Sbjct: 159 N-------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 433 RIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSD 492
                         ++L              +L          L  +    +    DL +
Sbjct: 212 DASVLFGSDKNTQKIHLAKN-----------SLAF-------DLGKVGLSKNLNGLDLRN 253

Query: 493 N 493
           N
Sbjct: 254 N 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 53/241 (21%)

Query: 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTA 289
           V ++ + +    V  +++ + +L L  L+ L L        +  F  S  +  + L   +
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 290 IE-ELPS--SIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDF 345
           +   + +  S+G  S L +L +S          S   +L SL++L+L             
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN---------- 161

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNN--NLYELSLDRSWGGDKQMGLSSPITLPLD 403
            ++  +                   V S+    L  L++  +        +S  +   + 
Sbjct: 162 -SISGA--------------NVVGWVLSDGCGELKHLAISGN-------KISGDV--DVS 197

Query: 404 GLHTTLTSLYLNYCGIL-ELPD----------SLEKNNFE-RIPESIIQLSRLVVLNLNY 451
                L  L ++       +P            +  N        +I   + L +LN++ 
Sbjct: 198 RC-VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 452 C 452
            
Sbjct: 257 N 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 58/318 (18%), Positives = 103/318 (32%), Gaps = 78/318 (24%)

Query: 233 LVILNLSEYVSLNSLPAEI--LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAI 290
           L  L +S     N +  ++       L+ L++   +    +P       ++ + + G  +
Sbjct: 180 LKHLAISG----NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

Query: 291 E-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG--------------C 335
             +   +I   + L  L +S  + +  +P     LKSL+ L+L                C
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 336 SNLQRL-----------PDDFGNLEASN-STLYAKGTAAKREVPSSIVGSNNNLYELSLD 383
             L  L           P  FG+   S   +L         E+P   +     L  L L 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSC--SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

Query: 384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGIL-ELPDS-------------LEKN 429
            +         S  +   L  L  +L +L L+       +  +             L+ N
Sbjct: 352 FN-------EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 430 NFE-RIPESIIQLSRLVVLNLNYC-------ERLQSLPKLPF------NLQGIFAHHCTA 475
            F  +IP ++   S LV L+L++          L SL KL         L+G        
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI------ 458

Query: 476 LSSISYKSSTQLFDLSDN 493
              + Y  + +   L  N
Sbjct: 459 PQELMYVKTLETLILDFN 476

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 7e-09
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 49/255 (19%)

Query: 233 LVILNLSEYVSLNSL----PAEILHLEFLKKLNLLGCSKLK-RLP-EFSSSGKIEEIWLD 286
           LV L+LS     N L    P+ +  L  L+ L L   + L+  +P E      +E + LD
Sbjct: 420 LVSLHLSF----NYLSGTIPSSLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILD 474

Query: 287 GTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG----------- 334
              +  E+PS +   + L ++ LS+ +    +P  + +L++L +L L             
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 335 --CSNLQRL-----------PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELS 381
             C +L  L           P          +  +  G     +    I  ++    E  
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG-----KRYVYI-KNDGMKKECH 588

Query: 382 LDR---SWGGDKQMGLSSPITL-PLDGLHTTLTSLYLNYCGILELPDSLE--KNNFE-RI 434
                  + G +   L+   T  P +                      L+   N     I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 435 PESIIQLSRLVVLNL 449
           P+ I  +  L +LNL
Sbjct: 649 PKEIGSMPYLFILNL 663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 52/310 (16%), Positives = 95/310 (30%), Gaps = 66/310 (21%)

Query: 231 NTLVILNLSEYVSLNSL----PAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIW 284
             + +LNL+     N L     A       L  L++ G + + +L          ++ + 
Sbjct: 25  TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDV-GFNTISKLEPELCQKLPMLKVLN 79

Query: 285 LDGTAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH---------- 333
           L    + +L   +    + L  L+L      K   +   + K+L  L+L           
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 334 ---GCSNLQRL-----------PDDFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLY 378
                 NLQ L            ++      +S   L       K   P     +   L+
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLF 198

Query: 379 ELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------- 425
            L L+       Q+G S    L L+  +T++ +L L+   +    ++             
Sbjct: 199 GLFLNNV-----QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 426 -LEKNNFERIPESIIQ-LSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKS 483
            L  NN   +       L +L    L Y   +Q L            H    +  ++ K 
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL-------HGLFNVRYLNLKR 305

Query: 484 STQLFDLSDN 493
           S     +S  
Sbjct: 306 SFTKQSISLA 315

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 65/295 (22%), Positives = 98/295 (33%), Gaps = 64/295 (21%)

Query: 233 LVILNLSE-YVSLNSLPAEI---LHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLD 286
           L  L+LS  + SL +L  E    L    L  LNL    K+ ++    FS  G +E + L 
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLG 413

Query: 287 GTAIEEL--PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC--SNLQRLP 342
              I +         L  +  +YLS  K L+   +S + + SL+ L L      N+   P
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 343 DDFGNLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYEL-----SLDRSWGGDKQ 391
             F  L        SN+ +          +   ++     L  L     +L R W     
Sbjct: 474 SPFQPLRNLTILDLSNNNI--------ANINDDMLEGLEKLEILDLQHNNLARLWKH--- 522

Query: 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPESII 439
                     L GL + L  L L   G  E+P              L  NN   +P S+ 
Sbjct: 523 -ANPGGPIYFLKGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 440 -QLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
                L  LNL     + S+       + +F      L+           D+  N
Sbjct: 581 NNQVSLKSLNLQKN-LITSVE------KKVFGPAFRNLTE---------LDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 48/294 (16%), Positives = 84/294 (28%), Gaps = 59/294 (20%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEF----LKKLNLLGCSKLKRLPEFSSSG----KIEEIW 284
           L  L L+  V L     E L LE     ++ L+L     L      +  G     +  + 
Sbjct: 197 LFGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLD 254

Query: 285 LDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD 343
           L    +  +   S   L +L Y +L           SL  L +++ LNL    +  +   
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--SFTKQSI 312

Query: 344 DFGNLEASNSTLYAKGTAAKR---------EVPSSIVGSNNNLYELSLDRSWGGDKQMGL 394
              +L   +   +      +           + S++     NL  LSL  S        L
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS-----FTSL 367

Query: 395 SSPITLPLDGL-HTTLTSLYLNYCGILELPDS------------LEKNNFERI--PESII 439
            +        L H+ L  L L    I ++               L  N   +    +   
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 440 QLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
            L  +  + L+Y                +  +    + S+      Q   L   
Sbjct: 428 GLENIFEIYLSYN-----------KYLQLTRNSFALVPSL------QRLMLRRV 464

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 32/240 (13%)

Query: 233 LVILNLSEYVSLNSLPAEIL--HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAI 290
           +  L+L     ++++    L    + L+ LNL     +  +       K++ + L    +
Sbjct: 146 VQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL 203

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG----CSNLQRLPDDFG 346
             +       + + ++ L + K L  +  +L   ++L+  +L G    C  L+       
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 347 NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLH 406
            ++              +++                                        
Sbjct: 263 RVQTVAK-------QTVKKLTGQNEEECTVPTLGHYGAYC-----------CEDLPAPFA 304

Query: 407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
             L +L      +L        +  ER+       +R   ++    E+ +++       +
Sbjct: 305 DRLIALKRKEHALLSGQG----SETERLECERENQARQREIDALK-EQYRTVIDQVTLRK 359

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 56/231 (24%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L +LNLS    L     ++  L  L+ L+L        + E      IE +      I  
Sbjct: 60  LELLNLS-SNVLYETL-DLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNISR 113

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS 351
           +  S         +YL++  ++  L          ++ L+L   + +  +          
Sbjct: 114 VSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL-NEIDTVN--------- 160

Query: 352 NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411
                           + +  S++ L  L+L           +     +    +   L +
Sbjct: 161 ---------------FAELAASSDTLEHLNLQY-------NFIYD---VKGQVVFAKLKT 195

Query: 412 LYLNYCGILELPDSLEK-----------NNFERIPESIIQLSRLVVLNLNY 451
           L L+   +  +    +            N    I +++     L   +L  
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 62/239 (25%)

Query: 274 FSSSGKIEEIWLDGTAIEELPSSIG-CLSRLLYLYLSDCKRLKSL-PSSLSQLKSLKLLN 331
             +  + +   +  +++++  +S+      +  L LS    L  +  + L+    L+LLN
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLN 64

Query: 332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391
           L     L     D  +L  +  TL                 +NN + EL           
Sbjct: 65  LSSN-VLYETL-DLESLS-TLRTLDL---------------NNNYVQELL---------- 96

Query: 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPE-SIIQL 441
                        +  ++ +L+     I  +  S         L  N    + +      
Sbjct: 97  -------------VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 442 SRLVVLNLNYCERLQSLPKLPF-----NLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
           SR+  L+L     + ++           L+ +   +     +      +  +  DLS N
Sbjct: 144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 58/240 (24%)

Query: 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNL----LGCSKLKRLPEFSSSGKIEEIWLD 286
            +L  L  +      +  +E+  L  L+ L+L    L             +  ++ + L 
Sbjct: 325 KSLKRLTFT-SNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLS 381

Query: 287 GTAIEELPSSIGCLSRLLYLYLSDCKRLKSLP--SSLSQLKSLKLLNLHGCSNLQRLPDD 344
              +  + S+   L +L +L       LK +   S    L++L  L++    + +   + 
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG 439

Query: 345 -FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD 403
            F  L +    L                 + N+  E  L                     
Sbjct: 440 IFNGLSSLE-VLKM---------------AGNSFQENFLPDI----------------FT 467

Query: 404 GLHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLN 450
            L   LT L L+ C + +L              ++  N  + +P+ I   L+ L  + L+
Sbjct: 468 EL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 52/273 (19%), Positives = 87/273 (31%), Gaps = 55/273 (20%)

Query: 229 IVNTLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWL 285
           +  +   L+LS +  L  L +        L+ L+L  C +++ + +  + S   +  + L
Sbjct: 26  LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLIL 83

Query: 286 DGTAIEELPSSI-GCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRL-- 341
            G  I+ L       LS L  L   +   L SL +  +  LK+LK LN+     +Q    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKL 141

Query: 342 PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP 401
           P+ F NL                           NL  L L      +K   +       
Sbjct: 142 PEYFSNL--------------------------TNLEHLDLS----SNKIQSIYCTDLRV 171

Query: 402 LDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL 461
           L  +     SL L+             N    I     +  RL  L L       ++ K 
Sbjct: 172 LHQMPLLNLSLDLSL------------NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 462 PFNLQGIFAHHCTALSSISYKSSTQLFDLSDNF 494
               QG+       L    +++   L     + 
Sbjct: 220 CI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 41/297 (13%), Positives = 89/297 (29%), Gaps = 54/297 (18%)

Query: 233 LVILNLSE-YVSLNSLPAEILHLEFLKKLNL-----LGCSKLKRLPE--FSSSGKIEEIW 284
           L  L L   + SLN +   I  L  L+   L          L++  +        +    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 285 LDGTAIEELPSSI----GCLSRLLYLYLSDCKRLKSLP--SSLSQLKSLKLLNLHGCSNL 338
                ++     I     CL+ +    L     ++ +   S     + L+L+N       
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 339 QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398
                    L  +++      +               +L  L L R+      +      
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVD----------LPSLEFLDLSRN-----GLSFKGCC 365

Query: 399 TLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERIPESII--QLSRLV 445
           +    G  T+L  L L++ G++ +  +            + +N +++ E  +   L  L+
Sbjct: 366 SQSDFGT-TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 446 VLNLNYCERLQSLPKLPF----NLQGIFAHHC---TALSSISYKSSTQLF--DLSDN 493
            L++++    +      F    +L+ +               +     L   DLS  
Sbjct: 425 YLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 52/271 (19%), Positives = 88/271 (32%), Gaps = 63/271 (23%)

Query: 243 SLNSLPAEILHLEFLKKL-NL----LGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSI 297
           +L +LPA I  +     L       L  + +  +        I ++ + G  +  +   I
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG-I 62

Query: 298 GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYA 357
             L+ L YL L+   ++  +   LS L  L  L +   +N         NL         
Sbjct: 63  EYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIG--TNKITDISALQNL--------- 109

Query: 358 KGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYC 417
                             NL EL L+          +S     PL  L T + SL L   
Sbjct: 110 -----------------TNLRELYLNED-------NISDIS--PLANL-TKMYSLNLGAN 142

Query: 418 GILELPDSLEK-----------NNFERIPESIIQLSRLVVLNLNYC--ERLQSLPKLPFN 464
             L     L             +  + +   I  L+ L  L+LNY   E +  L  L  +
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLT-S 200

Query: 465 LQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
           L    A+    T ++ ++  +      + +N
Sbjct: 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 49/282 (17%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  L +     +  + A + +L  L++L L     +  +   ++  K+  + L       
Sbjct: 90  LTNLYIG-TNKITDISA-LQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLS 146

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC-----SNLQRLPDDFGN 347
             S +  ++ L YL +++ K +K +   ++ L  L  L+L+       S L  L     +
Sbjct: 147 DLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYNQIEDISPLASLT----S 200

Query: 348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT 407
           L        A         P   V +   L  L +  +        ++     PL  L +
Sbjct: 201 LH----YFTAYVNQITDITP---VANMTRLNSLKIGNN-------KITDLS--PLANL-S 243

Query: 408 TLTSLYLNYCGILELPD----------SLEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457
            LT L +    I ++            ++  N    I   +  LS+L  L LN   +L +
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGN 301

Query: 458 LPKLPF----NLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
                     NL  +F      T +  ++  S     D ++ 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 72/282 (25%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCS-KLKRLPEFSSSG--KIEEIWLDG 287
           +   L L     L SLP  +   L  L KL+L       K     S  G   ++ + L  
Sbjct: 29  SATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 288 TAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLPDD- 344
             +  + S+   L +L +L       LK +        L++L  L++    + +   +  
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 145

Query: 345 FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404
           F  L                           +L  L +  +          + +      
Sbjct: 146 FNGLS--------------------------SLEVLKMAGN------SFQENFLPDIFTE 173

Query: 405 LHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLNY 451
           L   LT L L+ C + +L              ++  NNF  +     + L+ L VL+ + 
Sbjct: 174 L-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 452 CERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
              + +  K          H  ++L+ +         +L+ N
Sbjct: 233 N-HIMTSKK------QELQHFPSSLAFL---------NLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 50/262 (19%), Positives = 79/262 (30%), Gaps = 55/262 (20%)

Query: 281 EEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGC--SN 337
            EI  +   +  +P+ I   S    L L   K L+SLP     +L  L  L+L     S 
Sbjct: 10  TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 338 LQRLPDDFGNLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391
                       +      S + +          + S+ +G    L  L    S      
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV--------ITMSSNFLGL-EQLEHLDFQHS------ 111

Query: 392 MGLSS-PITLPLDGLHTTLTSLYLNYCGILELPD------------SLEKNNF-ERIPES 437
             L           L   L  L +++       +             +  N+F E     
Sbjct: 112 -NLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 438 IIQ-LSRLVVLNLNYCERLQSLPKLPF----NLQGIFAHHC--TALSSISYKSSTQLFDL 490
           I   L  L  L+L+ C +L+ L    F    +LQ +   H    +L +  YK    L  L
Sbjct: 170 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 491 SDNFKLDRNAVRIIVEDALQDI 512
                   N +    +  LQ  
Sbjct: 229 D----YSLNHIMTSKKQELQHF 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 46/260 (17%), Positives = 75/260 (28%), Gaps = 48/260 (18%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  L LS      +L      +   L  L++ G +K   L      +   + E+ L    
Sbjct: 303 LKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 290 IEELPSSIGC---LSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDD- 344
           IE           LS L  L LS  +   SL + +  +   L+LL+L     L+      
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQS 419

Query: 345 -FGNLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSP 397
            F NL        S+S L              +      L  L+L  +            
Sbjct: 420 PFQNLHLLKVLNLSHSLL--------DISSEQLFDGLPALQHLNLQGN-------HFPKG 464

Query: 398 ITLPLDGLH--TTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQLSR 443
                + L     L  L L++C +  +               L  N         +   +
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 444 LVVLNLNYCERLQSLPKLPF 463
            + LNL     +  +     
Sbjct: 525 GIYLNLAS-NHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 55/316 (17%), Positives = 101/316 (31%), Gaps = 67/316 (21%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNL----LGCSKLKRLPE--FSSSGKIEEIWLD 286
           L +      +    +   +   E L ++++    L       +    F     ++E+ L 
Sbjct: 230 LWLGTFE-DMDDEDISPAVF--EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 287 GTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDD- 344
            T + ELPS +  LS L  L LS   + ++L   S S   SL  L++ G +    L    
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 345 FGNLEA------SNSTLYAKGTAAK------------------REVPSSIVGSNNNLYEL 380
             NLE       S+  +                            + +        L  L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEK 428
            L  +        L              L  L L++  +    +             L+ 
Sbjct: 406 DLAFTR-------LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 429 NNFERI----PESIIQLSRLVVLNLNYCERLQSLPKLPF----NLQGIFAHHC--TALSS 478
           N+F +       S+  L RL +L L++C  L S+ +  F     +  +   H   T+ S 
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 479 ISYKSSTQLF-DLSDN 493
            +      ++ +L+ N
Sbjct: 518 EALSHLKGIYLNLASN 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 54/242 (22%)

Query: 231 NTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDG 287
           N+   L  S +  L ++       L  L  L+L  C ++  + E  F S  +++ + L  
Sbjct: 33  NSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTA 90

Query: 288 TAIEELPSSI-GCLSRLLYLYLSDCKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDD- 344
             +  +  +       L +L+      + S+    L   K+L+ L L    ++  +    
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK 148

Query: 345 FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404
               E     L                  NN ++ LS +                  +  
Sbjct: 149 GFPTE-KLKVLDF---------------QNNAIHYLSKE-----------------DMSS 175

Query: 405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464
           L    T+L LN          L  N+   I       +    LN    + L  + K   N
Sbjct: 176 L-QQATNLSLN----------LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 465 LQ 466
             
Sbjct: 225 ST 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 55/255 (21%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  + +S+   L  + A++  +L  L ++ +   + L  +    F +   ++ + +  T 
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 290 IEELPSSIGC-LSRLLYLYLSDCKRLKSLPS-SLSQLKS-LKLLNLHGCSNLQRLPDDFG 346
           I+ LP        + + L + D   + ++   S   L     +L L+    +Q + +   
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF 174

Query: 347 NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLH 406
           N    +    +                NNNL EL  D                    G  
Sbjct: 175 NGTQLDELNLS---------------DNNNLEELPNDV-----------------FHGA- 201

Query: 407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
           +    L ++   I  LP        E        L +L   +    ++L +L KL   L 
Sbjct: 202 SGPVILDISRTRIHSLPS----YGLEN-------LKKLRARSTYNLKKLPTLEKLV-ALM 249

Query: 467 GI---FAHHCTALSS 478
                +  HC A ++
Sbjct: 250 EASLTYPSHCCAFAN 264

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 52/227 (22%)

Query: 243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEEL--PSSIG 298
            +  +P+++       +L  +  +KL+ + +  FS  G +E+I +    + E+       
Sbjct: 20  KVTEIPSDLP--RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 299 CLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYA 357
            L +L  + +     L  +       L +L+ L +     ++ LPD           L  
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLD- 134

Query: 358 KGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYC 417
                        +  N N++ +  +                    GL      L+LN  
Sbjct: 135 -------------IQDNINIHTIERN-----------------SFVGLSFESVILWLNK- 163

Query: 418 GILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464
                      N  + I  S    ++L  LNL+    L+ LP   F+
Sbjct: 164 -----------NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 265 CSKLKRLPEFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPS-SLS 322
           C  ++R+P    S   + + L  T +  +PS +   L  +  +Y+S    L+ L S S  
Sbjct: 20  CKDIQRIPSLPPS--TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 323 QLKSLKLLNLHGCSNLQRLPDD-FGNLEASN-STLYAKGTAAKREVPSSIVGSNNNLYEL 380
            L  +  + +    NL  +  D    L       L    T  K     + V S +  + L
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKEL--PLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135

Query: 381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQ 440
            +  +        ++S       GL     +L L              N F  +      
Sbjct: 136 EITDN------PYMTSIPVNAFQGLCNETLTLKLYN------------NGFTSVQGYAFN 177

Query: 441 LSRLVVLNLNYCERLQSLPKLPF 463
            ++L  + LN  + L  + K  F
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAF 200

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 31/203 (15%), Positives = 69/203 (33%), Gaps = 18/203 (8%)

Query: 232 TLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
           +   L L     L ++P+     L  + ++ +     L++L    F +  K+  I +  T
Sbjct: 32  STQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 289 -AIEELPSSI-GCLSRLLYLYLSDCKRLKSLP--SSLSQLKSLKLLNLHGCSNLQRLPDD 344
             +  +       L  L +L + +   LK  P  + +       +L +     +  +P +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 345 -FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD 403
            F  L     TL          V      +   L  + L+++        L+        
Sbjct: 150 AFQGLCNETLTLKLYNNGF-TSVQGYAF-NGTKLDAVYLNKN------KYLTVIDKDAFG 201

Query: 404 GLHTTLTSLYLNYCGILELPDSL 426
           G+++  + L ++   +  LP   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 10/126 (7%)

Query: 233 LVILNLSEYVSLNSLPAE--ILHLEFLKKLNLLGCSKLKRLPE--FSS-SGKIEEIWLDG 287
           L  L +     L   P    +   +    L +     +  +P   F     +   + L  
Sbjct: 107 LKFLGIF-NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 288 TAIEELPSSIGCLSRLLYLYLSDCKRLKSLPS-SLSQLKS-LKLLNLHGCSNLQRLPDD- 344
                +       ++L  +YL+  K L  +   +   + S   LL++    ++  LP   
Sbjct: 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKG 224

Query: 345 FGNLEA 350
             +L+ 
Sbjct: 225 LEHLKE 230

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 56/315 (17%), Positives = 95/315 (30%), Gaps = 56/315 (17%)

Query: 223 DIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEE 282
            I E L   T+    L+     +    +   L  +  ++L G   +K L +     K + 
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQS 311

Query: 283 IWLDGTAIEELPS--------------------SIGCLSRLLYLYLSDCK--RLKSLPSS 320
           + +    +++ P+                        L  L YL LS            S
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 321 LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYEL 380
                SL+ L+L        +  +F  LE     L  + +  KR    S   S   L  L
Sbjct: 372 DLGTNSLRHLDLSFN-GAIIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-------------LE 427
            +                     GL T+L +L +      +   S             L 
Sbjct: 430 DIS-------YTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 428 KNNFERIPESIIQ-LSRLVVLNLNYCERLQSLPKLPF----NLQGIFAHHC--TALSSIS 480
           K   E+I   +   L RL +LN+++   L  L    +    +L  +            I 
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 481 YKSSTQL--FDLSDN 493
                 L  F+L++N
Sbjct: 541 QHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 44/241 (18%), Positives = 80/241 (33%), Gaps = 53/241 (21%)

Query: 231 NTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDG 287
           ++   ++LS +  L  L +    +   L+ L+L  C +++ + +  +     +  + L G
Sbjct: 32  SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTG 89

Query: 288 TAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQR--LPD 343
             I+   P S   L+ L  L   +  +L SL S  + QL +LK LN+     +    LP 
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA 147

Query: 344 DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD 403
            F NL                           NL  + L      +    ++      L 
Sbjct: 148 YFSNL--------------------------TNLVHVDL----SYNYIQTITVNDLQFLR 177

Query: 404 GLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPF 463
                  SL ++             N  + I +   Q  +L  L L       ++ K   
Sbjct: 178 ENPQVNLSLDMSL------------NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 464 N 464
            
Sbjct: 226 Q 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 41/258 (15%), Positives = 70/258 (27%), Gaps = 62/258 (24%)

Query: 280 IEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNL 338
            + I L    ++ L   S    S L +L LS C+       +   L  L  L L G    
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 339 QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398
              P  F  L                           +L  L    +        L+S  
Sbjct: 94  SFSPGSFSGL--------------------------TSLENLVAVET-------KLASLE 120

Query: 399 TLPLDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQLSR-- 443
           + P+  L  TL  L + +  I                   L  N  + I  + +Q  R  
Sbjct: 121 SFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 444 ---LVVLNLNYCERLQSLPKLPF---NLQGIFAHHCTALSSISYK-----SSTQLFDLSD 492
               + L+++    +  +    F    L  +        S+I        +   +  L  
Sbjct: 180 PQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 493 NFKLDRNAVRIIVEDALQ 510
               D   + I     ++
Sbjct: 239 GEFKDERNLEIFEPSIME 256

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 50/253 (19%), Positives = 87/253 (34%), Gaps = 61/253 (24%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
              +LNL E   +  +      HL  L+ L L     ++ +    F+    +  + L   
Sbjct: 65  NTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122

Query: 289 AIEELPSSI-GCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLKLLNLHGCSNLQRLPDD-F 345
            +  +P+     LS+L  L+L +   ++S+PS   +++ SL+ L+L     L  + +  F
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP-LDG 404
             L                           NL  L+L           L     +P L  
Sbjct: 182 EGLS--------------------------NLRYLNLAMC-------NLRE---IPNLTP 205

Query: 405 LHTTLTSLYLNYCGILELPD-------SLEK-----NNFERIPESIIQ-LSRLVVLNLNY 451
           L   L  L L+   +  +          L+K     +  + I  +    L  LV +NL +
Sbjct: 206 L-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 452 CERLQSLPKLPFN 464
              L  LP   F 
Sbjct: 265 N-NLTLLPHDLFT 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 55/249 (22%), Positives = 86/249 (34%), Gaps = 59/249 (23%)

Query: 233 LVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L +L L    S+  +     + L  L  L L     L  +P   F    K+ E+WL    
Sbjct: 101 LEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDDFGN 347
           IE +PS     +  L+ L L + K+L+ +   +   L +LK LNL  C N++ +P +   
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTP 216

Query: 348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT 407
           L                            L EL +  +                  GL  
Sbjct: 217 L--------------------------VGLEELEMSGN-------HFPEIRPGSFHGLS- 242

Query: 408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPF---- 463
           +L  L++    +  +              +   L+ LV LNL +   L SLP   F    
Sbjct: 243 SLKKLWVMNSQVSLIE-----------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR 290

Query: 464 NLQGIFAHH 472
            L  +  HH
Sbjct: 291 YLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 68/235 (28%)

Query: 299 CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYA 357
           C ++   +  +  + L  +P  +    + + LNL   +N+Q +  D F +L         
Sbjct: 52  CSNQFSKVVCTR-RGLSEVPQGIP--SNTRYLNLME-NNIQMIQADTFRHL--------- 98

Query: 358 KGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP---LDGLHTTLTSLYL 414
                            ++L  L L R+        +     +     +GL  +L +L L
Sbjct: 99  -----------------HHLEVLQLGRN-------SIR---QIEVGAFNGL-ASLNTLEL 130

Query: 415 NYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLNYCERLQSLPKL 461
               +  +P              L  N  E IP      +  L+ L+L   ++L+ + + 
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 462 PF----NLQGIFAHHCTALSSISY-KSSTQLFDLSDNFKLDRNAVRIIVEDALQD 511
            F    NL+ +    C  +  +        L +L     +  N    I   +   
Sbjct: 191 AFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELE----MSGNHFPEIRPGSFHG 240

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 42/288 (14%), Positives = 86/288 (29%), Gaps = 43/288 (14%)

Query: 233 LVILNLSEYVSLNSLP--AEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
           L  LNL       +L   +   +L  L+ L +        +    F+    + E+ +   
Sbjct: 100 LKYLNLM-GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 289 AIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGN 347
           ++    S S+  +  + +L L   +    L      L S++ L L    NL R       
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLP 217

Query: 348 LEASNSTLY---------AKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398
           ++  +S +             +  +       +   + +       +  GD     S  +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 399 TLPLDGLHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLV 445
           +        T+  L++    +                 ++E +    +P S  Q L  L 
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 446 VLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
            L+L+    +          +G +              S Q   LS N
Sbjct: 338 FLDLSEN-LMVEEYLKNSACKGAW-------------PSLQTLVLSQN 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 35/214 (16%)

Query: 300 LSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFG----NLEA---SN 352
              +  L++        L +  S L+ +K + +   S +  +P  F     +LE    S 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 353 STLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL 412
           + +  +         S+  G+  +L  L L ++      +         L  L   LTSL
Sbjct: 344 NLMVEEYL-----KNSACKGAWPSLQTLVLSQN-----HLRSMQKTGEILLTL-KNLTSL 392

Query: 413 YLNYCGILELPDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL 461
            ++      +PDS           L       +   I     L VL+++    L S    
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLF 449

Query: 462 PFNLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
              LQ ++        L   S      +  +S N
Sbjct: 450 LPRLQELYISRNKLKTLPDASLFPVLLVMKISRN 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 37/203 (18%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 280 IEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSN 337
           ++ + L    I  +    +   + L  L L    R+ ++   +   L SL+ L+L    +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-H 85

Query: 338 LQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSS 396
           L  L    FG L  S   L   G   +    +S+  +  NL  L +            S 
Sbjct: 86  LSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN------VETFSE 138

Query: 397 PITLPLDGLHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSR 443
              +   GL T+L  L +    +                 +L  +    + E     LS 
Sbjct: 139 IRRIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 444 LVVLNLNYCERLQSLPKLPFNLQ 466
           +  L L     L      P  + 
Sbjct: 198 VRYLELRDT-NLARFQFSPLPVD 219

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE 291
            +  LNLS    +  +   I     L+ L++     L     F     ++E+++    ++
Sbjct: 411 KMRFLNLS-STGIRVVKTCIPQ--TLEVLDVSNN-NLDSFSLFLPR--LQELYISRNKLK 464

Query: 292 ELPSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG 334
            LP +      LL + +S  + LKS+P     +L SL+ + LH 
Sbjct: 465 TLPDA-SLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHT 506

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 55/236 (23%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  L +     L  +       L  L++L L  C  L  +P    S    +  + L    
Sbjct: 130 LKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGN 347
           I  +       L RL  L +S    L ++  +     +L  L++  C NL  +P     +
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRH 246

Query: 348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT 407
           L                            L  L+L           +S+     L  L  
Sbjct: 247 LV--------------------------YLRFLNLSY-------NPISTIEGSMLHEL-L 272

Query: 408 TLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLN 450
            L  + L    +  +              ++  N    + ES+   +  L  L L+
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
            L  L+++ + +L ++P   + HL +L+ LNL   + +  +         +++EI L G 
Sbjct: 225 NLTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG 282

Query: 289 AIEELPSSI-GCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG 334
            +  +       L+ L  L +S  + L +L  S    + +L+ L L  
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 43/244 (17%), Positives = 78/244 (31%), Gaps = 54/244 (22%)

Query: 299 CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEA------S 351
           C ++   +     KR  ++P  +      +LL+L     ++ L  D+F +         +
Sbjct: 9   CSAQDRAVLCHR-KRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELN 64

Query: 352 NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411
            + +          V      +  NL  L L  +        L         GL + LT 
Sbjct: 65  ENIV--------SAVEPGAFNNLFNLRTLGLRSN-------RLKLIPLGVFTGL-SNLTK 108

Query: 412 LYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLNYCERLQSL 458
           L ++   I+ L D             +  N+   I       L+ L  L L  C  L S+
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSI 167

Query: 459 PKLPF----NLQGIFAHHC--TALSSISYKSSTQL--FDLSDNFKLDRNAVRIIVEDALQ 510
           P         L  +   H    A+   S+K   +L   ++S         +  +  + L 
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-----PYLDTMTPNCLY 222

Query: 511 DIQL 514
            + L
Sbjct: 223 GLNL 226

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 65/301 (21%), Positives = 103/301 (34%), Gaps = 69/301 (22%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGTAI 290
           L  +N S     N L  +I  L+ L KL  +  +  ++  +   ++   +  + L    I
Sbjct: 70  LTQINFSN----NQL-TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 124

Query: 291 EELPSSIGCLSRLLYLYLSDCK-----------RLKSL--------PSSLSQLKSLKLLN 331
            ++   +  L+ L  L LS               L+ L           L+ L +L+ L+
Sbjct: 125 TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183

Query: 332 LHGC-----SNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW 386
           +        S L +L     NLE    +L A         P   +G   NL ELSL+ + 
Sbjct: 184 ISSNKVSDISVLAKLT----NLE----SLIATNNQISDITP---LGILTNLDELSLNGN- 231

Query: 387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPD----------SLEKNNFERIPE 436
                  L       L  L T LT L L    I  L             L  N    I  
Sbjct: 232 ------QLKDIG--TLASL-TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 281

Query: 437 SIIQLSRLVVLNLNYC--ERLQSLPKLPFNLQGIFAHHC--TALSSISYKSSTQLFDLSD 492
            +  L+ L  L LN    E +  +  L  NL  +  +    + +S +S  +  Q     +
Sbjct: 282 PLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340

Query: 493 N 493
           N
Sbjct: 341 N 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 49/251 (19%), Positives = 86/251 (34%), Gaps = 48/251 (19%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGTAI 290
           L  L+L+     N L  +I  L  L  L  L  +  ++  L   S   K+ E+ L    I
Sbjct: 223 LDELSLNG----NQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC-----SNLQRLPDDF 345
             +   +  L+ L  L L++ + L+ +   +S LK+L  L L+       S +  L    
Sbjct: 278 SNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISPVSSLT--- 331

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGL 405
             L+     L+      K    SS+  +  N+  LS   +        +S     PL  L
Sbjct: 332 -KLQ----RLFFYNN--KVSDVSSL-ANLTNINWLSAGHN-------QISDLT--PLANL 374

Query: 406 HTTLTSLYLNYCGILELPDSLEK-----------NNFERIPESIIQLSRLVVLNLNYCER 454
            T +T L LN       P + +                  P +I         ++ +   
Sbjct: 375 -TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW-NL 432

Query: 455 LQSLPKLPFNL 465
                ++ +  
Sbjct: 433 PSYTNEVSYTF 443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 59/276 (21%)

Query: 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTA 289
           + +  I   +    + +  A    L    K  L G + +      +   ++  +  D   
Sbjct: 3   LGSATITQDTPINQIFTDTA----LAEKMKTVL-GKTNVTDTVSQTDLDQVTTLQADRLG 57

Query: 290 IEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE 349
           I+ +   +  L+ L  +  S+ + L  +   L  L  L  + ++    +  +     NL 
Sbjct: 58  IKSI-DGVEYLNNLTQINFSNNQ-LTDIT-PLKNLTKLVDILMNNN-QIADIT-PLANL- 111

Query: 350 ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL 409
                                     NL  L+L  +        ++     PL  L T L
Sbjct: 112 -------------------------TNLTGLTLFNN-------QITDID--PLKNL-TNL 136

Query: 410 TSLYLNYCGILELPD--------SLEKNNFERIPESIIQLSRLVVLNL--NYCERLQSLP 459
             L L+   I ++           L   N     + +  L+ L  L++  N    +  L 
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196

Query: 460 KLPFNLQGIFAHHC--TALSSISYKSSTQLFDLSDN 493
           KL  NL+ + A +   + ++ +   ++     L+ N
Sbjct: 197 KLT-NLESLIATNNQISDITPLGILTNLDELSLNGN 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 48/269 (17%), Positives = 81/269 (30%), Gaps = 53/269 (19%)

Query: 231 NTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDG 287
            +   L+LS +  L  L +        L+ L+L  C  ++ + +  + S   +  + L G
Sbjct: 28  FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 288 TAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRL--PDD 344
             I+ L   +   LS L  L   +          +  LK+LK LN+     +Q    P+ 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144

Query: 345 FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404
           F NL                           NL  L L  +    K   +       L  
Sbjct: 145 FSNL--------------------------TNLEHLDLSSN----KIQSIYCTDLRVLHQ 174

Query: 405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464
           +     SL L+             N    I     +  RL  L L       ++ K    
Sbjct: 175 MPLLNLSLDLSL------------NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 465 LQGIFAHHCTALSSISYKSSTQLFDLSDN 493
             G+       L    +++   L     +
Sbjct: 223 --GLAGLEVHRLVLGEFRNEGNLEKFDKS 249

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 38/216 (17%), Positives = 60/216 (27%), Gaps = 58/216 (26%)

Query: 280 IEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNL 338
            + + L    +  L   S      L  L LS C+       +   L  L  L L G    
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 339 QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398
                 F  L                          ++L +L    +        L+S  
Sbjct: 90  SLALGAFSGL--------------------------SSLQKLVAVET-------NLASLE 116

Query: 399 TLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSL 458
             P+  L  TL  L + +  I              +PE    L+ L  L+L+        
Sbjct: 117 NFPIGHL-KTLKELNVAHNLIQSFK----------LPEYFSNLTNLEHLDLSSN------ 159

Query: 459 PKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNF 494
                 +Q I+      L  +   + +   DLS N 
Sbjct: 160 -----KIQSIYCTDLRVLHQMPLLNLS--LDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 54/263 (20%)

Query: 226 EVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRL-------------- 271
           + L +              +         +     + +    L+ L              
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 272 PEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSL--PSSLSQLKSLKL 329
                +  ++ + L    +  + S+   L +L +L       LK +   S    L++L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 425

Query: 330 LNLHGCSNLQRLPDD-FGNLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382
           L++    + +   +  F  L +      + ++        +      I     NL  L L
Sbjct: 426 LDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF-------QENFLPDIFTELRNLTFLDL 477

Query: 383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNN 430
            +         L        + L ++L  L +++     L                  N+
Sbjct: 478 SQC-------QLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 431 FERIPESIIQ--LSRLVVLNLNY 451
                +  +Q   S L  LNL  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 57/314 (18%), Positives = 101/314 (32%), Gaps = 65/314 (20%)

Query: 228 LIVNTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLD 286
           L++         E    ++L     L +E  + L  L       +  F+    +    L 
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 287 GTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG--------CSNL 338
              IE +           +L L +CK  +     L  LK L   +  G          +L
Sbjct: 291 SVTIERVKDFSY-NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 339 QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG---------SNNNLYELSLDRSWGGD 389
           + L     +L  S + L  KG         S  G         S N +   ++  ++ G 
Sbjct: 350 EFL-----DL--SRNGLSFKGC-----CSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGL 395

Query: 390 KQM--------GLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKN 429
           +Q+         L       +      L  L +++       +             +  N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 430 NFER--IPESIIQLSRLVVLNLNYCERLQSLPKLPF----NLQGIFAHHC--TALSSISY 481
           +F+   +P+   +L  L  L+L+ C +L+ L    F    +LQ +   H    +L +  Y
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 482 KSSTQL--FDLSDN 493
           K    L   D S N
Sbjct: 515 KCLNSLQVLDYSLN 528

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 27/241 (11%)

Query: 243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSI-GC 299
           SLNS+P+ +   E +K L+L   +++  +          ++ + L    I  +       
Sbjct: 42  SLNSIPSGLT--EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

Query: 300 LSRLLYLYLSDCKRLKSLPSSL-SQLKSLKLLNLHGCSNLQRLPDD--FGNLEASNSTLY 356
           L  L +L LS    L +L SS    L SL  LNL G    + L +   F +L      L 
Sbjct: 99  LGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT-KLQILR 155

Query: 357 AKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNY 416
                   ++          L EL +D S        L S     L  +   ++ L L+ 
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASD-------LQSYEPKSLKSI-QNVSHLILHM 207

Query: 417 CGILELPD-------SLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIF 469
              + L +       S+E              S L     N   +  +   +    + +F
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 470 A 470
            
Sbjct: 268 Q 268

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 232 TLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAI 290
              IL+LS    L +     L     L +LNL    +L +L    +   +  + L    +
Sbjct: 32  DTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLKLLNLHGCSN-LQRLPDD-FGN 347
           + LP     L  L  L +S  + L SLP      L  L+ L L G  N L+ LP      
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTP 146

Query: 348 L 348
            
Sbjct: 147 T 147

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 47/212 (22%), Positives = 62/212 (29%), Gaps = 61/212 (28%)

Query: 281 EEIWLDGTAIEELPSSI-GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ 339
             + L    +     +     +RL  L L   + L  L      L  L  L+L     LQ
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQ-LQ 90

Query: 340 RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPIT 399
            LP     L                            L  L +  +        L+S   
Sbjct: 91  SLPLLGQTL--------------------------PALTVLDVSFN-------RLTS--- 114

Query: 400 LP---LDGLHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSR 443
           LP   L GL   L  LYL    +  LP             SL  NN   +P  ++  L  
Sbjct: 115 LPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 444 LVVLNLNYCERLQSLPKLPF---NLQGIFAHH 472
           L  L L     L ++PK  F    L   F H 
Sbjct: 174 LDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
            L +L++S +  L SLP   L  L  L++L L   ++LK LP    + + K+E++ L   
Sbjct: 101 ALTVLDVS-FNRLTSLPLGALRGLGELQELYL-KGNELKTLPPGLLTPTPKLEKLSLANN 158

Query: 289 AIEELPSSI-GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334
            + ELP+ +   L  L  L L +   L ++P        L    LHG
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 78/525 (14%), Positives = 156/525 (29%), Gaps = 156/525 (29%)

Query: 10  QHNR--NDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEIS---------Q 58
           Q +R  ND  +  K   +R      L  AL +          L+    +           
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----------LRPAKNVLIDGVLGSGKT 164

Query: 59  SLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYG--QIVVAVCYRVEPSHVR-- 114
            +  A++V   Y +  + D    W     L +  C +     +++  + Y+++P+     
Sbjct: 165 WV--ALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 115 KQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLP 174
               + +     ++      +++     CL V   L   ++    +  +       +   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFN-------LSCK 267

Query: 175 VLV---NRCLITVSHSNTITMHDSLGDMEREIVQKES-------INYPGECSPLWHHKDI 224
           +L+    + +     S   T H SL      +   E        ++   +  P       
Sbjct: 268 ILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------ 320

Query: 225 YEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIW 284
            EVL  N   +  ++E     S+   +   +  K +N   C KL  + E S         
Sbjct: 321 -EVLTTNPRRLSIIAE-----SIRDGLATWDNWKHVN---CDKLTTIIESS--------- 362

Query: 285 LDGTAIEELPSSIGCLSRLLYLYLS----DCK----RLKSL---------PSSLSQLKSL 327
                +  L  +     R ++  LS            L  +            +++L   
Sbjct: 363 -----LNVLEPA---EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 328 KLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387
            L+      +   +P  +  L+      YA        +  SIV      Y +       
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYA--------LHRSIVDH----YNIPKTFDSD 462

Query: 388 GDKQMGLSSPITLPLDGLHTTLTSLYL-NYCGI-LELPDSLEKNNFERIPESIIQLSRLV 445
                     I   LD         Y  ++ G  L+  +  E+          + L R+V
Sbjct: 463 D--------LIPPYLDQ--------YFYSHIGHHLKNIEHPER----------MTLFRMV 496

Query: 446 VLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDL 490
            L+  + E+     K+         H  TA ++     +T L  L
Sbjct: 497 FLDFRFLEQ-----KI--------RHDSTAWNASGSILNT-LQQL 527

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 44/232 (18%)

Query: 243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSI-GC 299
            L ++P  I      +++ L G +++  +P   F +   +  +WL    +  + ++    
Sbjct: 22  GLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 300 LSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDD-FGNLEA------S 351
           L+ L  L LSD  +L+S+  +    L  L  L+L  C  LQ L    F  L A       
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQ 137

Query: 352 NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411
           ++ L        + +P        NL  L L           +SS       GL  +L  
Sbjct: 138 DNAL--------QALPDDTFRDLGNLTHLFLHG-------NRISSVPERAFRGL-HSLDR 181

Query: 412 LYLNYCGILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLN 450
           L L+   +  +               L  NN   +P   +  L  L  L LN
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAI 290
           L IL L  + +L      +L+   L +++L   ++L+++    F    ++E +++    +
Sbjct: 228 LTILKLQ-HNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNLE 349
             L      +  L  L LS    L  +  +  Q   L+ L L    ++  L       L+
Sbjct: 285 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 51/259 (19%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           +  L +  + ++  LP  +  ++  L  L L     L  LP   F ++ K+  + +    
Sbjct: 95  IQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLN-----LHGCSNLQRL- 341
           +E +        + L  L LS   RL  +  S +  L    +       L     ++ L 
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 342 ----------PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391
                           L      L  +         ++ + +   L E+ L  +      
Sbjct: 212 ASHNSINVVRGPVNVELT----ILKLQHN---NLTDTAWLLNYPGLVEVDLSYN------ 258

Query: 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPD-----------SLEKNNFERIPESIIQ 440
             L   +  P   +   L  LY++   ++ L              L  N+   +  +  Q
Sbjct: 259 -ELEKIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 441 LSRLVVLNLNYCERLQSLP 459
             RL  L L++   + +L 
Sbjct: 317 FDRLENLYLDHN-SIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 54/210 (25%)

Query: 300 LSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYA 357
           L+    +   +   ++ LP++ L   + ++LLNL+    ++ +    F     +   LY 
Sbjct: 44  LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYA-HTIQKLYM 100

Query: 358 KGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYC 417
                            N +  L                        +   LT L L   
Sbjct: 101 ---------------GFNAIRYLPPH-----------------VFQNV-PLLTVLVLERN 127

Query: 418 GILELPD------------SLEKNNFERIPESIIQ-LSRLVVLNLNYCERLQSLPKLPF- 463
            +  LP             S+  NN ERI +   Q  + L  L L+   RL  +      
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIP 186

Query: 464 NLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
           +L      +   LS+++   + +  D S N
Sbjct: 187 SLFHANVSYN-LLSTLAIPIAVEELDASHN 215

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 45/263 (17%), Positives = 82/263 (31%), Gaps = 37/263 (14%)

Query: 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTA 289
             +  L ++E +           L+ L   ++     L      +S   ++    L  + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNL 348
              +        S   +L  +      S+    S LK L+ L L   + L+         
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMT 399

Query: 349 EASNS--TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLH 406
           +  +S  TL     +              ++  L+L  +        L+  +      L 
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-------MLTGSVF---RCLP 449

Query: 407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPF--- 463
             +  L L+             N    IP+ +  L  L  LN+    +L+S+P   F   
Sbjct: 450 PKVKVLDLHN------------NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRL 496

Query: 464 -NLQGIFAH----HCTALSSISY 481
            +LQ I+ H     CT    I Y
Sbjct: 497 TSLQYIWLHDNPWDCT-CPGIRY 518

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 44/283 (15%), Positives = 78/283 (27%), Gaps = 44/283 (15%)

Query: 237 NLSEYV--SLNSLPAEILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGTAIEE 292
           N +  V  +      + +  E L  L  L C    +  +        + ++      I  
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT 78

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKL-------LNLHGCSNLQRLPDD 344
           L   +   + L YL     K L +L  + L++L  L         L++     L  L   
Sbjct: 79  LD--LSQNTNLTYLACDSNK-LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCA 135

Query: 345 FGNLE----ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITL 400
              L     + N+ L        +++    V     L  L              +    L
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF----------NKITEL 185

Query: 401 PLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNY 451
            +      L  L  +   I +L  +            N    I  +   L++L   + + 
Sbjct: 186 DVSQN-KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVT--PLTQLTYFDCSV 242

Query: 452 CERLQSLPKLPF-NLQGIFAHHCTALSSISYKSSTQLFDLSDN 493
              L  L       L  +       L  I    +TQL      
Sbjct: 243 N-PLTELDVSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAE 283

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           L  L+ S    L  +   +  L  L   +    + L  L   S+  K+  +    T + E
Sbjct: 214 LTFLDCS-SNKLTEID--VTPLTQLTYFDC-SVNPLTELD-VSTLSKLTTLHCIQTDLLE 268

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN 352
           +  +    ++L+Y     C+++K L   ++    L LL+      +  L  D        
Sbjct: 269 IDLTH--NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA-GITEL--DLSQNP-KL 320

Query: 353 STLYAKGTAAKREVPSSI-VGSNNNLYELSLDRSWGGDKQMGLSSPIT-LPLDGLHTTLT 410
             LY   T       + + V  N  L  LS             ++ I      G    L 
Sbjct: 321 VYLYLNNTEL-----TELDVSHNTKLKSLSCV-----------NAHIQDFSSVGKIPALN 364

Query: 411 SLYLNYCGILELPDSLEKNN 430
           + +      + +P     NN
Sbjct: 365 NNFEAEGQTITMPKETLTNN 384

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 65/259 (25%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  L L     ++ +       L  L++L L   ++LK LPE    +   ++E+ +    
Sbjct: 78  LHTLILI-NNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMPKT---LQELRVHENE 132

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSL---PSSLSQLKSLKLLNLHGCSNLQRLPDD- 344
           I ++  S+   L++++ + L     LKS      +   +K L  + +    N+  +P   
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190

Query: 345 FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404
             +L      L+                  N + ++                     L G
Sbjct: 191 PPSLT----ELHL---------------DGNKITKVDAAS-----------------LKG 214

Query: 405 LHTTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQLSRLVVLNLNYC 452
           L   L  L L++  I  + +             L  N   ++P  +     + V+ L+  
Sbjct: 215 L-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN- 272

Query: 453 ERLQSLPKLPFNLQGIFAH 471
             + ++    F   G    
Sbjct: 273 NNISAIGSNDFCPPGYNTK 291

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L +L+LS    + ++       L  L  L L   + ++ L    FS    ++++    T 
Sbjct: 54  LQVLDLS-RCEIQTIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLP---- 342
           +  L +   G L  L  L ++    ++S       S L +L+ L+L     +Q +     
Sbjct: 112 LASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169

Query: 343 DDFGNLEASNSTLY 356
                +   N +L 
Sbjct: 170 RVLHQMPLLNLSLD 183

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 59/267 (22%), Positives = 88/267 (32%), Gaps = 72/267 (26%)

Query: 235 ILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIE 291
            L+LS +  L  L +        L+ L+L  C +++ + +  + S   +  + L G  I+
Sbjct: 32  NLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 292 ELPSSI-GCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLKLLNLHGCSN-LQRLPDD--FG 346
            L       LS L  L   +   L SL +     LK+LK LN+    N +Q       F 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA--HNLIQSFKLPEYFS 146

Query: 347 NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLH 406
           NL                           NL  L L            S+ I        
Sbjct: 147 NL--------------------------TNLEHLDLS-----------SNKIQSIYCTDL 169

Query: 407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466
             L  +      +L L   L  N    I     +  RL  L L+   +L+S+P       
Sbjct: 170 RVLHQM-----PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVP------D 217

Query: 467 GIFAHHCTALSSISYKSSTQLFDLSDN 493
           GIF      L+S+      Q   L  N
Sbjct: 218 GIFDR----LTSL------QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 73/228 (32%)

Query: 305 YLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAA 362
            L LS    L+ L S S      L++L+L  C  +Q + D  + +L              
Sbjct: 32  NLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSL-------------- 75

Query: 363 KREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSS-PITLPLDGLHTTLTSLYLNYCGILE 421
                       ++L  L L  +        + S  +     GL ++L  L      +  
Sbjct: 76  ------------SHLSTLILTGNP-------IQSLALGAF-SGL-SSLQKLVAVETNLAS 114

Query: 422 LPD------------SLEKNNFERIPESII--QLSRLVVLNLNYCERLQSLPKLPFNLQG 467
           L +            ++  N  +          L+ L  L+L+   ++QS+         
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY------CT 167

Query: 468 IFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQLM 515
                   L         Q+  L+ +  L  N +  I   A ++I+L 
Sbjct: 168 DLRV----L--------HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 38/242 (15%), Positives = 85/242 (35%), Gaps = 41/242 (16%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L +L L     L+SLP  I  +   L  L++     L+R+ +  F ++  ++ + L    
Sbjct: 125 LTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 182

Query: 290 IEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNL 348
           +  +   +  +  L +  +S    L +L        +++ L+     ++  +       L
Sbjct: 183 LTHVD--LSLIPSLFHANVSYN-LLSTLAI----PIAVEELDASHN-SINVVRGPVNVEL 234

Query: 349 EASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT 408
                 L  +         ++ + +   L E+ L  +        L   +  P   +   
Sbjct: 235 T----ILKLQHN---NLTDTAWLLNYPGLVEVDLSYN-------ELEKIMYHPFVKM-QR 279

Query: 409 LTSLYLNYCGILELPD-----------SLEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457
           L  LY++   ++ L              L  N+   +  +  Q  RL  L L++   + +
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVT 338

Query: 458 LP 459
           L 
Sbjct: 339 LK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAI 290
           L IL L  + +L      +L+   L +++L   ++L+++    F    ++E +++    +
Sbjct: 234 LTILKLQ-HNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLE 349
             L      +  L  L LS    L  +  +  Q   L+ L L    ++  L       L+
Sbjct: 291 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 49/218 (22%)

Query: 300 LSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDD-FGNLEA------S 351
           L+    +   +   ++ LP++ L   + ++LLNL+    ++ +    F            
Sbjct: 50  LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 107

Query: 352 NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLH--TTL 409
            + +        R +P  +  +   L  L L+R+        LSS   LP    H    L
Sbjct: 108 FNAI--------RYLPPHVFQNVPLLTVLVLERND-------LSS---LPRGIFHNTPKL 149

Query: 410 TSLYLNYCGILELPDS------------LEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457
           T+L ++   +  + D             L  N    +  S   +  L   N++Y   L +
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN-LLST 206

Query: 458 LPKLPFNLQGIFAHHCTALSSISYKSSTQL--FDLSDN 493
           L      ++ + A H  +++ +    + +L    L  N
Sbjct: 207 LAIPI-AVEELDASHN-SINVVRGPVNVELTILKLQHN 242

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 64/329 (19%), Positives = 109/329 (33%), Gaps = 54/329 (16%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCS-KLKRLPE--FSSSGKIEEIWLDGT 288
           L+IL L  Y     L       L  L+ L L  C+     L    F     +E + L   
Sbjct: 81  LIILKLD-YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 289 AIEELPSSI--GCLSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCSN-LQRLPDD 344
            I+++  +     + R   L L+   ++KS+    L   +      L   S  LQ + + 
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 345 FGNLEASNS--------TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLS- 395
           +   E   +        TL   G   K  +      +       SL  S   +       
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 396 ----SPITLPLDGLHTT-LTSLYLNYCGILELPD------------SLEKNNFERIPESI 438
                P      GL  + + +  L+   I  L              +L +N   +I ++ 
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 439 -IQLSRLVVLNLNYCERLQSLPKLPF----NLQGIFAHHC--TALSSISYKSSTQLFDLS 491
              L+ L+ LNL+    L S+    F     L+ +   +    AL   S+     L +L+
Sbjct: 319 FWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 492 DNFKLDRNAVRIIVEDA------LQDIQL 514
               LD N ++ + +        LQ I L
Sbjct: 378 ----LDTNQLKSVPDGIFDRLTSLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
            L  L L+    +N +       L  L KLNL   + L  +    F +  K+E + L   
Sbjct: 300 DLEQLTLA-QNEINKIDDNAFWGLTHLLKLNL-SQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 289 AIEELPSSI-GCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHG 334
            I  L       L  L  L L   + LKS+P     +L SL+ + LH 
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 37/263 (14%)

Query: 223 DIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLK----KLNLLGCSKLKRLPE--FSS 276
            I +++   T+   ++S       L                ++ +            +  
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 277 SGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC 335
              +       +    +       +S  L+L  S+     ++  +   L  L+ L L   
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM- 357

Query: 336 SNLQRLPDDFGNLEASNS--TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMG 393
           + L+ L           S   L     +   +          +L  L++  +        
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-------I 410

Query: 394 LSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE 453
           L+         L   +  L L+             N  + IP+ +++L  L  LN+    
Sbjct: 411 LTD---TIFRCLPPRIKVLDLHS------------NKIKSIPKQVVKLEALQELNVASN- 454

Query: 454 RLQSLPKLPF----NLQGIFAHH 472
           +L+S+P   F    +LQ I+ H 
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 25/292 (8%)

Query: 229 IVNTLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWL 285
           +     ILN+S    ++ L    +  L  L+ L +    +++ L    F  + ++E + L
Sbjct: 19  LSQKTTILNIS-QNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL 76

Query: 286 DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLP- 342
               + ++         L +L LS      +LP       +  LK L L    +L++   
Sbjct: 77  SHNKLVKISC--HPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEKSSV 132

Query: 343 DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL 402
               +L  S   L    T  ++E P  +     +    SL         +   +      
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGL----QDFNTESL--------HIVFPTNKEFHF 180

Query: 403 DGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462
               +  T   L    I  + +  + + F  I   +    +L  L LN  E   +     
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 463 FNLQGIFAHHCTALSSISYKSSTQLFDLSDNF-KLDRNAVRIIVEDALQDIQ 513
             L         ++S++  +      D   +   L   ++  +V D     Q
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 42/307 (13%), Positives = 84/307 (27%), Gaps = 32/307 (10%)

Query: 204 VQKESINYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLL 263
            ++  ++           +    +L+V+   +          + P+ +   +        
Sbjct: 252 REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLND 311

Query: 264 GCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQ 323
              +      ++ S   +E  L     E          +L    LS  ++   L S L  
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELES 370

Query: 324 LKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383
            K L+ L       L  +      L+                     +   + L  +   
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLY-------------EKETLQYFSTLKAVDPM 417

Query: 384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPD----------SLEKNNFER 433
           R+   D            L   +  +  L+L +  +  L             L  N    
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA 477

Query: 434 IPESIIQLSRLVVLNL--NYCERLQSLPKLPFNLQGIFAHH-----CTALSSISYKSSTQ 486
           +P ++  L  L VL    N  E +  +  LP  LQ +   +       A+  +       
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 487 LFDLSDN 493
           L +L  N
Sbjct: 537 LLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 200 EREIVQKESINYPGECSPLWHHKDIYEVL-IVNTLVILNLS-----EYVSLNSLPAEILH 253
           E +      I       PL + K+  +    +  +  +  +         L       + 
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 254 LEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKR 313
              ++ L+L     L  L        +  + L    +  LP ++  L  L  L  SD   
Sbjct: 440 YADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-A 497

Query: 314 LKSLPSSLSQLKSLKLLNLHG 334
           L+++   ++ L  L+ L L  
Sbjct: 498 LENVD-GVANLPRLQELLLCN 517

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 29/220 (13%), Positives = 60/220 (27%), Gaps = 55/220 (25%)

Query: 237 NLSEYVSLN-----SLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE 291
               Y++       +       +  L  + L     +  L     +  I+++ ++     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 292 ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS 351
              + I  LS L  L +           +LS L SL LL++   ++   +      L   
Sbjct: 80  NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-- 136

Query: 352 NSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411
                                    +  + L  +        ++  +  PL  L   L S
Sbjct: 137 ------------------------KVNSIDLSYN------GAITDIM--PLKTL-PELKS 163

Query: 412 LYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY 451
           L + + G+ +                I    +L  L    
Sbjct: 164 LNIQFDGVHDY-------------RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 54/188 (28%)

Query: 279 KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNL 338
            +  I L    + +L + I     +  L +++     +  + +S L +L+ L + G    
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVT 101

Query: 339 QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398
                +   L                           +L  L +  S            I
Sbjct: 102 SDKIPNLSGLT--------------------------SLTLLDISHS-------AHDDSI 128

Query: 399 TLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC-----E 453
              ++ L   + S+ L+Y G +     L+             L  L  LN+ +       
Sbjct: 129 LTKINTL-PKVNSIDLSYNGAITDIMPLKT------------LPELKSLNIQFDGVHDYR 175

Query: 454 RLQSLPKL 461
            ++  PKL
Sbjct: 176 GIEDFPKL 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 70/250 (28%)

Query: 253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK 312
            L+ +  L+  G   +  +        +  + L    I +L + +  L+++  L LS   
Sbjct: 39  DLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNP 96

Query: 313 RLKSLPSSLSQLKSLKLLNLHGC-----SNLQRLPDDFGNLEASNSTLYAKGTAAKREVP 367
            LK++ S+++ L+S+K L+L        + L  L     NL+     LY           
Sbjct: 97  -LKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLS----NLQ----VLYL---------- 136

Query: 368 SSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLE 427
                  N +  +S                   PL GL T L  L +    + +L     
Sbjct: 137 -----DLNQITNIS-------------------PLAGL-TNLQYLSIGNAQVSDL----- 166

Query: 428 KNNFERIPESIIQLSRLVVLNL--NYCERLQSLPKLPFNLQGIFAHHC--TALSSISYKS 483
                     +  LS+L  L    N    +  L  LP NL  +   +   + +S ++  S
Sbjct: 167 --------TPLANLSKLTTLKADDNKISDISPLASLP-NLIEVHLKNNQISDVSPLANTS 217

Query: 484 STQLFDLSDN 493
           +  +  L++ 
Sbjct: 218 NLFIVTLTNQ 227

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  L LS +  LN + +E    +  L+ L+L     L  L E  FS    +E + L    
Sbjct: 66  LHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLP----SSLSQLKSLKLLNLHGCSNLQRLPDD 344
           I  +  +    +++L  LYLS   ++   P       ++L  L LL+L   + L++LP  
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLT 181

Query: 345 -FGNLEA 350
               L A
Sbjct: 182 DLQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 57/193 (29%)

Query: 280 IEEIWLDGTAIEELPSSIGC--LSRLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGCS 336
              + L    +  L +      L+ L  L LS    L  + S +   + +L+ L+L    
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN- 98

Query: 337 NLQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLS 395
           +L  L +  F +L+                           L  L L            +
Sbjct: 99  HLHTLDEFLFSDLQ--------------------------ALEVLLLY-----------N 121

Query: 396 SPIT-LP---LDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY 451
           + I  +     + +   L  LYL+   I   P  L         +   +L +L++L+L+ 
Sbjct: 122 NHIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVEL----I----KDGNKLPKLMLLDLSS 172

Query: 452 CERLQSLPKLPFN 464
             +L+ LP     
Sbjct: 173 N-KLKKLPLTDLQ 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 52/343 (15%), Positives = 95/343 (27%), Gaps = 61/343 (17%)

Query: 183 TVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVNTLV--ILNLSE 240
           T++ S  I            I          +         I +++  N+ +  +  +  
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 63

Query: 241 YVSLNSLPA------EILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGTAIEE 292
             ++  L        +I  L  LK L  L     K+K L       K++ + L+   I +
Sbjct: 64  LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123

Query: 293 LPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC-----SNLQRLPDDFGN 347
           + + +  L +L  LYL + K +  + + LS+L  L  L+L          L  L      
Sbjct: 124 I-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT----K 176

Query: 348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT 407
           L+     LY                S N++ +L                     L GL  
Sbjct: 177 LQ----NLYL---------------SKNHISDLR-------------------ALAGL-K 197

Query: 408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQG 467
            L  L L     L  P + + N            S +    ++     +         + 
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

Query: 468 IFAHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQ 510
                      ++   +   F       L          D   
Sbjct: 258 TNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSI-GC 299
                   +   E L +L +     L+ L        G++  + +  + +  +       
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 300 LSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334
             RL  L LS    L+SL     Q  SL+ L L G
Sbjct: 79  TPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 42/290 (14%), Positives = 81/290 (27%), Gaps = 51/290 (17%)

Query: 220 HHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGK 279
               +Y  + V+    +N    + L  L             N        +      +  
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 280 IEEIWLDGTAIEELPSSI---GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS 336
           I         I++   +       S + +L LS              LK LK+LNL    
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN- 300

Query: 337 NLQRLPDD-FGNLEA------SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389
            + ++ D+ F  L+       S + L         E+ SS       +  + L ++    
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLL--------GELYSSNFYGLPKVAYIDLQKN---- 348

Query: 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNL 449
               +       L      L +L L    +  +                  +  +  + L
Sbjct: 349 HIAIIQDQTFKFL----EKLQTLDLRDNALTTIHF----------------IPSIPDIFL 388

Query: 450 NYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSST------QLFDLSDN 493
           +   +L +LPK+      I       L ++            Q+  L+ N
Sbjct: 389 SGN-KLVTLPKINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN 436

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 29/234 (12%)

Query: 252 LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC 311
              +  +  +++    LKRL        +    +    +      +G +S L  L L + 
Sbjct: 54  TEADLGQFTDIIKSLSLKRL-------TVRAARIPSRILFGALRVLG-ISGLQELTLENL 105

Query: 312 KRLKSLPSSL-----SQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREV 366
           +   + P  L       L  L L N+   +    L +    L+     L      +    
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNF 164

Query: 367 PSSIVGSNNNLYELSLD--RSWGGDKQMGLSSPITLP----LDGLHTTLTSLYLNYCGIL 420
               V     L  L L      G    +    P+  P    L   +  + +       + 
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 421 ELPDSLEK-----NNFERIPESIIQ--LSRLVVLNLNYCERLQSLPK-LPFNLQ 466
                L+      N+      +      S+L  LNL++   L+ +PK LP  L 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLS 277

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAI 290
           N++  +  +    + S+   I +L  ++ L L G +KL  +        +  + L G  +
Sbjct: 41  NSIDQIIAN-NSDIKSVQG-IQYLPNVRYLAL-GGNKLHDISALKELTNLTYLILTGNQL 97

Query: 291 EELPSSI-GCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLKLLNLHGCSN-LQRLP 342
           + LP+ +   L+ L  L L +  +L+SLP  +  +L +L  LNL    N LQ LP
Sbjct: 98  QSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLA--HNQLQSLP 149

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 51/254 (20%), Positives = 100/254 (39%), Gaps = 46/254 (18%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
              +L+L     ++ L  +    L+ L  L L   +K+ ++ E  FS   K++++++   
Sbjct: 55  DTTLLDLQNN-DISELRKDDFKGLQHLYALVL-VNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 289 AIEELPSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG--CSNLQRLPDDF 345
            + E+P      S L+ L + D + ++ +P    S L+++  + + G    N    P  F
Sbjct: 113 HLVEIPP--NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 346 GNLEASNSTL-YAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPIT-LPLD 403
             L+ +   +  AK T   +++P         L EL LD +            I  + L+
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPE-------TLNELHLDHN-----------KIQAIELE 211

Query: 404 GLH--TTLTSLYLNYCGILELPD------------SLEKNNFERIPESIIQLSRLVVLNL 449
            L   + L  L L +  I  + +             L+ N   R+P  +  L  L V+ L
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271

Query: 450 NYCERLQSLPKLPF 463
           +    +  +    F
Sbjct: 272 HTN-NITKVGVNDF 284

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 232 TLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGT 288
           TL  L+L     + ++  E L     L +L L    +++ +     S    + E+ LD  
Sbjct: 194 TLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN 251

Query: 289 AIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-------LSQLKSLKLLNLHG 334
            +  +P+ +  L  L  +YL     +  +  +         +      ++L  
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  +N S    +  +          + ++ L   ++L+ +    F     ++ + L    
Sbjct: 59  LRKINFS-NNKITDIEEGAFEGASGVNEILL-TSNRLENVQHKMFKGLESLKTLMLRSNR 116

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG 334
           I  + +     LS +  L L D  ++ ++   +   L SL  LNL  
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLA 162

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 20/138 (14%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQK------CIETFIGNDLKRGDEISQSLGDAVEVS- 67
           DV +    ED        L S L          ++     D   G  I   L  A+  S 
Sbjct: 12  DVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLR---DATPGGAIVSELCQALSSSH 66

Query: 68  SIYIIFSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSF------- 120
              ++ +       WC  ++L+ +          + +   +  +    ++          
Sbjct: 67  CRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRG 126

Query: 121 -EDSFSKLEERFPDKMQT 137
            +  F +++E     +QT
Sbjct: 127 PDGGFRQVKEAVMRYLQT 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 58/204 (28%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCS--KLKRLPEFSSSGKIEEIWLDGTAI 290
           +  L L+     N L  +I  L  LK L  L     K+K L       K++ + L+   I
Sbjct: 70  VTKLFLNG----NKL-TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 291 EELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC-----SNLQRLPDDF 345
            ++ + +  L +L  LYL + K +  + + LS+L  L  L+L          L  L    
Sbjct: 125 SDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT--- 178

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGL 405
             L+     LY                S N++ +L                     L GL
Sbjct: 179 -KLQ----NLYL---------------SKNHISDLR-------------------ALAGL 199

Query: 406 HTTLTSLYLNYCGILELPDSLEKN 429
              L  L L     L  P + + N
Sbjct: 200 -KNLDVLELFSQECLNKPINHQSN 222

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 235 ILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIE 291
           IL L     +  L   +   L  LK+L L G ++L  LP   F S  ++  + L    + 
Sbjct: 44  ILYL-HDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 292 ELPSSI-GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNL 348
            LPS++   L  L  L++   K L  LP  + +L  L  L L   + L+ +P   F  L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRL 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 233 LVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA 289
           L  ++LS    ++ L  +    L  L  L L G  K+  LP+  F     ++ + L+   
Sbjct: 58  LRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK 115

Query: 290 IEELPSSI-GCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG 334
           I  L       L  L  L L D  +L+++   + S L++++ ++L  
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 20/125 (16%)

Query: 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE 292
           +  ++ ++   ++     +  L++++K+ L  C  +                 +   +E 
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI-----------------EDGCLER 105

Query: 293 LPSSIGCLSRLLYLYLSDCKRL--KSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEA 350
           L         +L + +  C  +  K +  +L   ++LK L L     ++         + 
Sbjct: 106 LSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKT 164

Query: 351 SNSTL 355
           S  +L
Sbjct: 165 SLPSL 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 46/282 (16%)

Query: 233 LVILNLSE-YVSLNSLPAEILHLEFLKKLNLLGCSKL--KRLPEFSSSGK------IEEI 283
           L  + L    V+ + L       +  K L L  C       L   +++ +      + E 
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 284 WLDGTAIEELPSSIGCLSRLLYLYLSDCKRL---KSLPSSLSQLKSLKLLNLHGCSNLQR 340
            +D  +   L       + L+ L +S         +L   +++  +LK L L+    L++
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226

Query: 341 LPDDFGNL----EASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSS 396
           L           E       A+         S  +     L  LS               
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW--------DAVP 278

Query: 397 PITLPLDGLHTTLTSLYLNYCGI-----------------LELPDSLEKNNFERIPESII 439
                +  + + LT+L L+Y  +                 L + D +E    E +  +  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST-- 336

Query: 440 QLSRLVVLNLNYCERLQSLPKLPFNLQGI--FAHHCTALSSI 479
               L  L +   E     P +    QG+   +  C  L S+
Sbjct: 337 -CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.02
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.98
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	98.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.61
2js7_A	160	Myeloid differentiation primary response protein M	98.6
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	98.6
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.79

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=5.1e-23  Score=202.57  Aligned_cols=213  Identities=27%  Similarity=0.407  Sum_probs=177.9

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEec
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYL  308 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L  308 (526)
                      ...++.|+++++ .+..+|..+.++++|++|++++|... .+|. +..+.+|++|++++|.++.+|..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            467899999995 56689998999999999999998654 7775 89999999999999999999999999999999999


Q ss_pred             cCCccCcccCcCCCC---------CCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130          309 SDCKRLKSLPSSLSQ---------LKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE  379 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~  379 (526)
                      ++|...+.+|..+..         +++|++|++++|. +..+|..++++++|+ .|++++|.+ ..+|..+..+ ++|+.
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~-~L~L~~N~l-~~l~~~l~~l-~~L~~  233 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLK-SLKIRNSPL-SALGPAIHHL-PKLEE  233 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCC-EEEEESSCC-CCCCGGGGGC-TTCCE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCC-EEEccCCCC-CcCchhhccC-CCCCE
Confidence            999889999988765         9999999999975 458999999999999 999999999 6788887777 99999


Q ss_pred             EEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          380 LSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       380 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      |+++    +|.....   .+..+.++. +|+.|+|++|.+.           ..+|.++..+++|+.|+|++|+.++.+|
T Consensus       234 L~Ls----~n~~~~~---~p~~~~~l~-~L~~L~L~~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          234 LDLR----GCTALRN---YPPIFGGRA-PLKRLILKDCSNL-----------LTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             EECT----TCTTCCB---CCCCTTCCC-CCCEEECTTCTTC-----------CBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             EECc----CCcchhh---hHHHhcCCC-CCCEEECCCCCch-----------hhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            9994    4433222   222244444 9999999998744           3678888999999999999999999999


Q ss_pred             Cccccccc
Q 038130          460 KLPFNLQG  467 (526)
Q Consensus       460 ~~~~~L~~  467 (526)
                      ..+.+|..
T Consensus       295 ~~l~~L~~  302 (328)
T 4fcg_A          295 SLIAQLPA  302 (328)
T ss_dssp             GGGGGSCT
T ss_pred             HHHhhccC
Confidence            76544433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.5e-23  Score=205.12  Aligned_cols=244  Identities=16%  Similarity=0.190  Sum_probs=190.8

Q ss_pred             CcceEEEeccCCCCC--CCChhccccCCCcEEeeCC-CCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLN--SLPAEILHLEFLKKLNLLG-CSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~-~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~  305 (526)
                      .+++.|+++++....  .+|..+.++++|++|++++ |.....+|. +..+++|++|++++|.+. .+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            478999999977666  7899999999999999995 665556775 899999999999999998 88999999999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcc-cccceeeccccccccccChhhhcccCCcceEEccc
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR  384 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  384 (526)
                      |++++|.+.+.+|..+..+++|++|++++|...+.+|..++.++ .|+ .|++++|.+.+.+|..+..+ + |+.|+++.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANL-N-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGC-C-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCC-c-ccEEECcC
Confidence            99999998778999999999999999999877668999999998 899 99999999977888888777 5 99999954


Q ss_pred             CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---
Q 038130          385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---  461 (526)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---  461 (526)
                      |    ....   ..+..+..+. +|+.|++++|.+++.            +..+..+++|++|++++|...+.+|..   
T Consensus       207 N----~l~~---~~~~~~~~l~-~L~~L~L~~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          207 N----MLEG---DASVLFGSDK-NTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             S----EEEE---CCGGGCCTTS-CCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             C----cccC---cCCHHHhcCC-CCCEEECCCCceeee------------cCcccccCCCCEEECcCCcccCcCChHHhc
Confidence            4    2111   1122233444 999999999976542            223556677777777777655566643   


Q ss_pred             cccccccccccccccccCC---CCCCCCEEeccCCCCCC
Q 038130          462 PFNLQGIFAHHCTALSSIS---YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       462 ~~~L~~L~l~~c~~L~~l~---~~~~L~~L~l~~c~~l~  497 (526)
                      +++|+.|+++++.--..++   .+++|+.|++++|+.+.
T Consensus       267 l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             CcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            4567777777765433443   46677777888877543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=2.5e-22  Score=215.36  Aligned_cols=256  Identities=16%  Similarity=0.199  Sum_probs=206.1

Q ss_pred             CcceEEEeccCCCCCCCCh--hccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCC-CCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPA--EILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSR-LLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~-L~~L~  307 (526)
                      .++++|++++|... .+|.  .+.++++|++|++++|.....+|.+..+++|++|++++|.++.+|..++.+++ |++|+
T Consensus       305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred             CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence            68899999996544 8888  89999999999999987554788888889999999999999999999999999 99999


Q ss_pred             ccCCccCcccCcCCCCCC--CCcEEeecCCCCCCcCCCccc-------CcccccceeeccccccccccChhhhcccCCcc
Q 038130          308 LSDCKRLKSLPSSLSQLK--SLKLLNLHGCSNLQRLPDDFG-------NLEASNSTLYAKGTAAKREVPSSIVGSNNNLY  378 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~~~~-------~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~  378 (526)
                      +++|.+. .+|..+..+.  +|++|++++|...+..|..+.       .+.+|+ .|++++|.+ ..+|..++..+++|+
T Consensus       384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~-~L~Ls~N~l-~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS-SINLSNNQI-SKFPKELFSTGSPLS  460 (636)
T ss_dssp             CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE-EEECCSSCC-CSCCTHHHHTTCCCS
T ss_pred             ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC-EEECcCCcc-CcCCHHHHccCCCCC
Confidence            9998855 8888777655  899999999888888888887       778899 999999999 688888877559999


Q ss_pred             eEEcccCCCCCCCCCCCCCcccC-----cccccCcccEEEccCCCCCCCCCc-------------cCCCCcccccHHHhc
Q 038130          379 ELSLDRSWGGDKQMGLSSPITLP-----LDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQ  440 (526)
Q Consensus       379 ~L~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~lp~~-------------l~~~~l~~lp~~l~~  440 (526)
                      .|+++.|    .... .+.....     ...+ ++|+.|++++|.++++|..             +++|.++.+|..+..
T Consensus       461 ~L~Ls~N----~l~~-i~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~  534 (636)
T 4eco_A          461 SINLMGN----MLTE-IPKNSLKDENENFKNT-YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN  534 (636)
T ss_dssp             EEECCSS----CCSB-CCSSSSEETTEECTTG-GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             EEECCCC----CCCC-cCHHHhcccccccccc-CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence            9999544    2211 1111000     0111 2899999999999987753             678899999999999


Q ss_pred             cCCCCEeccc------CCccCCcCCCc---cccccccccccccccccCC--CCCCCCEEeccCCCCCC
Q 038130          441 LSRLVVLNLN------YCERLQSLPKL---PFNLQGIFAHHCTALSSIS--YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       441 l~~L~~L~L~------~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~--~~~~L~~L~l~~c~~l~  497 (526)
                      +++|+.|+++      +|...+.+|..   +++|+.|++++|.- ..++  ..++|+.|++++|+...
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence            9999999995      45567777854   57899999998876 6666  36899999999997543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=3.6e-22  Score=219.05  Aligned_cols=153  Identities=22%  Similarity=0.238  Sum_probs=119.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L  308 (526)
                      ..++.|++++|.....+|..+.++++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++.+++|++|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            4567777777665556777788888888888888765555664 777888888888888877 67778888888888888


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ++|.+.+.+|..+..+++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N  548 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDC-RSLIWLDLNTN  548 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGC-TTCCEEECCSS
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCC-CCCCEEECCCC
Confidence            88887777888888888888888888777777888888888888 88888888877788877776 88888888654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=1.3e-21  Score=201.66  Aligned_cols=267  Identities=19%  Similarity=0.125  Sum_probs=181.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~  307 (526)
                      .++++|++++|......|..+.++++|++|++++|.....++  .+.++++|++|++++|.+..+ |..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            567888888865554557778888888888888876654554  378888888888888888855 67788888888888


Q ss_pred             ccCCccCcccCcC--CCCCCCCcEEeecCCCCCCcCCCc-ccCcccccceeeccccccccccChhhhcc-----------
Q 038130          308 LSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGS-----------  373 (526)
Q Consensus       308 L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~~~~l~~~-----------  373 (526)
                      +++|.+.+..|..  +..+++|++|++++|......|.. ++++++|+ .|++++|.+.+..+..+...           
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH-VLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC-EEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc-EEeCCCCcccccChhhhhccccccccccccc
Confidence            8888766555544  778888888888887665555665 77888888 88888887754444433221           


Q ss_pred             ----------------------cCCcceEEcccCCCC-----------------------CC------------------
Q 038130          374 ----------------------NNNLYELSLDRSWGG-----------------------DK------------------  390 (526)
Q Consensus       374 ----------------------~~~L~~L~l~~~~~~-----------------------~~------------------  390 (526)
                                            +++|++|+++.|...                       +.                  
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                  145667776544110                       00                  


Q ss_pred             -------CCC--------CCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccc-cHHHhccC
Q 038130          391 -------QMG--------LSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERI-PESIIQLS  442 (526)
Q Consensus       391 -------~~~--------~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~l-p~~l~~l~  442 (526)
                             .+.        .....+..+..+ ++|++|++++|.+++++..            +++|.++.+ |..+..++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             cccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence                   000        000001112233 3788888888887765432            777888876 46778889


Q ss_pred             CCCEecccCCccCCcCCC---ccccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHH
Q 038130          443 RLVVLNLNYCERLQSLPK---LPFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNA  500 (526)
Q Consensus       443 ~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~  500 (526)
                      +|+.|++++|...+..|.   .+++|+.|+++++. ++.+     ..+++|++|++++|+--...+
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999998855444353   25789999998864 3333     358899999999998655544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4e-22  Score=196.11  Aligned_cols=216  Identities=23%  Similarity=0.325  Sum_probs=184.3

Q ss_pred             cCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          254 LEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       254 l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      ..++++|++++|. +..+|. +..+.+|++|++++|.++.+|..++++++|++|++++|.+. .+|..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            5789999999976 557775 88899999999999999999999999999999999999855 88999999999999999


Q ss_pred             cCCCCCCcCCCcccC---------cccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcc
Q 038130          333 HGCSNLQRLPDDFGN---------LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD  403 (526)
Q Consensus       333 ~~~~~~~~lp~~~~~---------l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  403 (526)
                      ++|+..+.+|..++.         +++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.|    ....    .+..+.
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~-~L~L~~n~l-~~lp~~l~~l-~~L~~L~L~~N----~l~~----l~~~l~  226 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQ-SLRLEWTGI-RSLPASIANL-QNLKSLKIRNS----PLSA----LGPAIH  226 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCC-EEEEEEECC-CCCCGGGGGC-TTCCEEEEESS----CCCC----CCGGGG
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCC-EEECcCCCc-CcchHhhcCC-CCCCEEEccCC----CCCc----Cchhhc
Confidence            999999999987765         99999 999999999 5899988777 99999999554    2211    111244


Q ss_pred             cccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccccccccccCC
Q 038130          404 GLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSIS  480 (526)
Q Consensus       404 ~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~  480 (526)
                      .+. +|++|++++|.+.+           .+|.++..+++|+.|+|++|...+.+|..   +++|+.|++++|..+..+|
T Consensus       227 ~l~-~L~~L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          227 HLP-KLEELDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             GCT-TCCEEECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             cCC-CCCEEECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            444 99999999998554           56778889999999999999999999964   5789999999999888877


Q ss_pred             ----CCCCCCEEeccCCC
Q 038130          481 ----YKSSTQLFDLSDNF  494 (526)
Q Consensus       481 ----~~~~L~~L~l~~c~  494 (526)
                          .+++|+.+++..+.
T Consensus       295 ~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          295 SLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             GGGGGSCTTCEEECCGGG
T ss_pred             HHHhhccCceEEeCCHHH
Confidence                58999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=5.2e-23  Score=220.72  Aligned_cols=151  Identities=19%  Similarity=0.256  Sum_probs=102.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-------------------------------------------
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK-------------------------------------------  267 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-------------------------------------------  267 (526)
                      ..++.|+++++...+.+|+.++++++|++|+|++|..                                           
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            3567788887766667777788888888888877632                                           


Q ss_pred             ----------------------------------CCcCCC-CCCCCcccEEEecccCCcc------------------cC
Q 038130          268 ----------------------------------LKRLPE-FSSSGKIEEIWLDGTAIEE------------------LP  294 (526)
Q Consensus       268 ----------------------------------~~~lp~-~~~l~~L~~L~L~~~~i~~------------------lp  294 (526)
                                                        ++.+|. ++.+++|++|+|++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                                              112443 6667777777777777775                  77


Q ss_pred             cccc--CCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC-CCC-cCCCcccCc------ccccceeecccccccc
Q 038130          295 SSIG--CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS-NLQ-RLPDDFGNL------EASNSTLYAKGTAAKR  364 (526)
Q Consensus       295 ~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~~L~l~~~~~~~  364 (526)
                      ..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. ..+ .+|..++++      ++|+ .|++++|.+ .
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l-~  318 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNL-K  318 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCC-S
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcC-C
Confidence            7777  77777777777777667777777777777777777765 333 466666655      6666 777777777 3


Q ss_pred             ccCh--hhhcccCCcceEEccc
Q 038130          365 EVPS--SIVGSNNNLYELSLDR  384 (526)
Q Consensus       365 ~~~~--~l~~~~~~L~~L~l~~  384 (526)
                      .+|.  .+..+ ++|+.|+++.
T Consensus       319 ~ip~~~~l~~l-~~L~~L~L~~  339 (636)
T 4eco_A          319 TFPVETSLQKM-KKLGMLECLY  339 (636)
T ss_dssp             SCCCHHHHTTC-TTCCEEECCS
T ss_pred             ccCchhhhccC-CCCCEEeCcC
Confidence            6666  55555 6777777743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=3.1e-21  Score=200.19  Aligned_cols=271  Identities=17%  Similarity=0.105  Sum_probs=176.2

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      ..++.|++++|......+..+.++++|++|++++|......|. +.++++|++|+|++|.++.+|.. ++++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4678888888654444456778888888888888754444453 78888888888888888877764 678888888888


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG  388 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  388 (526)
                      ++|.+....|..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..++......+++|+.|++..|...
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE-QLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC-EEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC-EEECCCCcC-cccChhHhcccCCCcEEeCCCCcCc
Confidence            88877766777788888888888888766555566788888888 888888887 5555543344477888877544111


Q ss_pred             CCCC-----------------CCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HH
Q 038130          389 DKQM-----------------GLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SI  438 (526)
Q Consensus       389 ~~~~-----------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l  438 (526)
                      ....                 ......+....... +|+.|++++|.++++|..            +++|.++.++. .+
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            0000                 00000000011112 677777777776666632            56666666553 45


Q ss_pred             hccCCCCEecccCCccCCcCCCc---cccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130          439 IQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAVRIIV  505 (526)
Q Consensus       439 ~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~~~~~  505 (526)
                      ..+++|+.|+|++|...+..|..   +++|+.|+++++. ++.+     ..+++|+.|++++||-.......++.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~  342 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF  342 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence            66777777777776433333332   4577888887763 3333     35788999999999865554444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=4.8e-21  Score=209.64  Aligned_cols=255  Identities=15%  Similarity=0.177  Sum_probs=189.3

Q ss_pred             CcceEEEeccCCCCCCCCh--hccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCC-CCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPA--EILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSR-LLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~-L~~L~  307 (526)
                      ++++.|++++|... .+|.  .+.++++|++|++++|... .+|.+..+++|+.|++++|.+..+|..+..+++ |++|+
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence            36788888875444 7777  7888888888888887644 777778888888888888888888888888888 88888


Q ss_pred             ccCCccCcccCcCCCCCCC--CcEEeecCCCCCCcCCC---ccc--CcccccceeeccccccccccChhhhcccCCcceE
Q 038130          308 LSDCKRLKSLPSSLSQLKS--LKLLNLHGCSNLQRLPD---DFG--NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYEL  380 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~--L~~L~l~~~~~~~~lp~---~~~--~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L  380 (526)
                      +++|.+. .+|..+..+..  |+.|++++|...+.+|.   .++  .+.+|+ .|++++|.+ ..+|..++..+++|+.|
T Consensus       626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~-~L~Ls~N~L-~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS-TVTLSYNEI-QKFPTELFATGSPISTI  702 (876)
T ss_dssp             CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE-EEECCSSCC-CSCCHHHHHTTCCCSEE
T ss_pred             CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC-EEEccCCcC-CccCHHHHccCCCCCEE
Confidence            8887744 77777666544  88888888766554442   222  334788 899999988 58888887555999999


Q ss_pred             EcccCCCCCCCCCCCCCcccC-----cccccCcccEEEccCCCCCCCCCc-------------cCCCCcccccHHHhccC
Q 038130          381 SLDRSWGGDKQMGLSSPITLP-----LDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQLS  442 (526)
Q Consensus       381 ~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~lp~~-------------l~~~~l~~lp~~l~~l~  442 (526)
                      +++.|    .... .+.....     ..++ ++|+.|+|++|.++.+|..             +++|.++.+|..+..++
T Consensus       703 ~Ls~N----~L~~-ip~~~~~~~~~~l~nl-~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~  776 (876)
T 4ecn_A          703 ILSNN----LMTS-IPENSLKPKDGNYKNT-YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS  776 (876)
T ss_dssp             ECCSC----CCSC-CCTTSSSCTTSCCTTG-GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT
T ss_pred             ECCCC----cCCc-cChHHhcccccccccc-CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCC
Confidence            99544    2111 1111100     1111 2899999999999887754             67889999999999999


Q ss_pred             CCCEecccC------CccCCcCCCc---cccccccccccccccccCC--CCCCCCEEeccCCCCCC
Q 038130          443 RLVVLNLNY------CERLQSLPKL---PFNLQGIFAHHCTALSSIS--YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       443 ~L~~L~L~~------~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~--~~~~L~~L~l~~c~~l~  497 (526)
                      +|+.|+|++      |...+.+|..   +++|+.|++++|.- ..+|  ..++|+.|+|++|+...
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS  841 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred             CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence            999999977      5556777753   57899999999866 7776  36899999999998543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=5.3e-22  Score=217.72  Aligned_cols=150  Identities=20%  Similarity=0.271  Sum_probs=135.5

Q ss_pred             hhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCE
Q 038130          228 LIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLY  305 (526)
Q Consensus       228 ~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~  305 (526)
                      .....+++|++++|.....+|..+..+++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++++++|++
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence            3456899999999887778999999999999999999987767775 889999999999999998 78999999999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE  379 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~  379 (526)
                      |++++|.+.+.+|..++.+++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..++.. ..+..
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~-~~~~~  566 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMFKQ-SGKIA  566 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC-EEECCSSEEESBCCGGGGTT-TTCBC
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC-EEECCCCccCCcCChHHhcc-cchhh
Confidence            99999998889999999999999999999988889999999999999 99999999988999988765 44433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=3.2e-21  Score=190.26  Aligned_cols=206  Identities=22%  Similarity=0.265  Sum_probs=126.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..+++|++++|......|..+.++++|++|++++|......|. +..+++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            4567777777543333345677777777777777654333343 6777777777777777777776665  677777777


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCC--CcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNL--QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      +|.+....+..+..+++|++|++++|...  ...|..+..+ +|+ .|++++|.+ ..+|..+.   ++|+.|+++.|  
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L~l~~n~l-~~l~~~~~---~~L~~L~l~~n--  203 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YLRISEAKL-TGIPKDLP---ETLNELHLDHN--  203 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CCBCCSSBC-SSCCSSSC---SSCSCCBCCSS--
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC-EEECcCCCC-CccCcccc---CCCCEEECCCC--
Confidence            77644433344677777777777776542  2445556666 677 777777777 55666543   56777777433  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccHHHhccCCCCEecccCC
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                        .....   ....+..+. +|+.|++++|.+++++..            +++|.++.+|.++..+++|+.|++++|
T Consensus       204 --~i~~~---~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          204 --KIQAI---ELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             --CCCCC---CTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             --cCCcc---CHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence              21111   111133333 777788877777665431            445555555555555666666666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.1e-21  Score=212.51  Aligned_cols=252  Identities=19%  Similarity=0.233  Sum_probs=182.2

Q ss_pred             HhhcCcceEEEeccCCCCC-----------------CCChhcc--ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEec
Q 038130          227 VLIVNTLVILNLSEYVSLN-----------------SLPAEIL--HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLD  286 (526)
Q Consensus       227 ~~~~~~l~~L~l~~~~~~~-----------------~lp~~~~--~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~  286 (526)
                      +....++++|++++|....                 .+|..++  ++++|++|++++|.....+|. +..+++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            3445788999999976544                 2888877  999999999999988888885 8899999999999


Q ss_pred             ccC-Cc--ccCccccCCC-------CCCEEeccCCccCcccCc--CCCCCCCCcEEeecCCCCCCcCCCcccCcccccce
Q 038130          287 GTA-IE--ELPSSIGCLS-------RLLYLYLSDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNST  354 (526)
Q Consensus       287 ~~~-i~--~lp~~i~~L~-------~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~  354 (526)
                      +|. ++  .+|..++++.       +|++|++++|.+. .+|.  .++++++|++|++++|... .+| .++++++|+ .
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~-~  599 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT-D  599 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES-E
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce-E
Confidence            997 77  4888777665       9999999998866 8998  8999999999999997654 888 899999999 9


Q ss_pred             eeccccccccccChhhhcccCC-cceEEcccCCCCCCCCCCCCCcccCccccc-CcccEEEccCCCCCCCCC----c---
Q 038130          355 LYAKGTAAKREVPSSIVGSNNN-LYELSLDRSWGGDKQMGLSSPITLPLDGLH-TTLTSLYLNYCGILELPD----S---  425 (526)
Q Consensus       355 L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~lp~----~---  425 (526)
                      |++++|.+ ..+|..+..+ ++ |+.|+++.|    ....    .+..+.... ++|+.|++++|.+.+.+.    .   
T Consensus       600 L~Ls~N~l-~~lp~~l~~l-~~~L~~L~Ls~N----~L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          600 LKLDYNQI-EEIPEDFCAF-TDQVEGLGFSHN----KLKY----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             EECCSSCC-SCCCTTSCEE-CTTCCEEECCSS----CCCS----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             EECcCCcc-ccchHHHhhc-cccCCEEECcCC----CCCc----CchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            99999999 5889888777 77 999999554    2111    111111111 247777777777754211    0   


Q ss_pred             ----------cCCCCcccccHHHh-ccCCCCEecccCCccCCcCCCc-c----------ccccccccccccccccCC---
Q 038130          426 ----------LEKNNFERIPESII-QLSRLVVLNLNYCERLQSLPKL-P----------FNLQGIFAHHCTALSSIS---  480 (526)
Q Consensus       426 ----------l~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~-~----------~~L~~L~l~~c~~L~~l~---  480 (526)
                                +++|.++.+|.++. .+++|+.|+|++| .+..+|.. .          ++|+.|++++|. +..++   
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l  747 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDF  747 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGG
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHh
Confidence                      56677777776554 6777777777776 34456542 1          167777776652 22333   


Q ss_pred             ---CCCCCCEEeccCCC
Q 038130          481 ---YKSSTQLFDLSDNF  494 (526)
Q Consensus       481 ---~~~~L~~L~l~~c~  494 (526)
                         .+++|+.|+|++|.
T Consensus       748 ~~~~l~~L~~L~Ls~N~  764 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNC  764 (876)
T ss_dssp             STTTCTTCCEEECCSSC
T ss_pred             hhccCCCcCEEEeCCCC
Confidence               35666666666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=6.3e-21  Score=188.00  Aligned_cols=237  Identities=22%  Similarity=0.250  Sum_probs=140.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..+++|++++|......+..+.++++|++|++++|......|. +..+++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            3566777777543333333566777777777777654433343 6677777777777777777766554  577777777


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCC--cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ--RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      +|.+....+..+..+++|++|++++|....  ..+..+.++++|+ .|++++|.+ ..+|..+.   ++|+.|+++.|  
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l-~~l~~~~~---~~L~~L~l~~n--  202 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNI-TTIPQGLP---PSLTELHLDGN--  202 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCC-CSCCSSCC---TTCSEEECTTS--
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCcc-ccCCcccc---ccCCEEECCCC--
Confidence            766544444456677777777777755432  4455666777777 777777776 55665443   66777777433  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---ccc
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFN  464 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~  464 (526)
                        ..   ....+..+..+. +|+.|++++|.+++++           +.++..+++|+.|++++| .+..+|..   .++
T Consensus       203 --~l---~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~  264 (330)
T 1xku_A          203 --KI---TKVDAASLKGLN-NLAKLGLSFNSISAVD-----------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKY  264 (330)
T ss_dssp             --CC---CEECTGGGTTCT-TCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSS
T ss_pred             --cC---CccCHHHhcCCC-CCCEEECCCCcCceeC-----------hhhccCCCCCCEEECCCC-cCccCChhhccCCC
Confidence              21   111111122333 7777777777655433           235566677777777776 44456542   356


Q ss_pred             ccccccccccccccCC-----------CCCCCCEEeccCCCC
Q 038130          465 LQGIFAHHCTALSSIS-----------YKSSTQLFDLSDNFK  495 (526)
Q Consensus       465 L~~L~l~~c~~L~~l~-----------~~~~L~~L~l~~c~~  495 (526)
                      |+.|+++++. ++.++           ..+.|+.|++++||.
T Consensus       265 L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          265 IQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence            6666666553 22222           135677777777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=4.7e-21  Score=198.84  Aligned_cols=237  Identities=22%  Similarity=0.173  Sum_probs=160.5

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCccc-CccccCCCCCCEE
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYL  306 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L  306 (526)
                      ...+++|++++|......|..+.++++|++|++++|. +..+|.  +.++++|++|++++|.+..+ |..+..+++|++|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            3577888888865444456777888888888888865 445553  67788888888888888754 5567888888888


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW  386 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  386 (526)
                      ++++|.+....|..+..+++|++|++++|......+..+.++++|+ .|++++|.+.+..+..+..+ ++|+.|+++.+.
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~  211 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-VLRLRHLNINAIRDYSFKRL-YRLKVLEISHWP  211 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC-EEEEESCCCCEECTTCSCSC-TTCCEEEEECCT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc-EEeCCCCcCcEeChhhcccC-cccceeeCCCCc
Confidence            8888776666666777888888888887654333333466777777 77777776633222233333 666666664321


Q ss_pred             --------------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccc
Q 038130          387 --------------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERI  434 (526)
Q Consensus       387 --------------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~l  434 (526)
                                          .++.   ........+..+ ++|+.|+|++|.+++++..            +++|.++.+
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCN---LTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSC---CCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred             cccccCcccccCccccEEECcCCc---ccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence                                1111   011000112333 4999999999998876653            778888876


Q ss_pred             -cHHHhccCCCCEecccCCccCCcCCC----cccccccccccccc
Q 038130          435 -PESIIQLSRLVVLNLNYCERLQSLPK----LPFNLQGIFAHHCT  474 (526)
Q Consensus       435 -p~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~c~  474 (526)
                       |..+..+++|+.|+|++| .+..+|.    .+++|+.|++++++
T Consensus       288 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          288 EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence             567889999999999999 5666664    25689999998754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.1e-20  Score=190.82  Aligned_cols=247  Identities=15%  Similarity=0.118  Sum_probs=128.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      +.+++|++++|......+..+..+++|++|++++|......|. +..+++|++|++++|.++.+|.. ++++++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            3455555555432222223455555555555555442222222 45555555555555555555544 255555555555


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccc------------------cccChhh
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAK------------------REVPSSI  370 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~------------------~~~~~~l  370 (526)
                      ++|.+....|..+..+++|++|++++|... .++  ++.+++|+ .|++++|.+.                  ..+|...
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~-~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF-HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCS-EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccc-eeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence            555544333444555555555555554322 111  22222232 3333222221                  1122111


Q ss_pred             hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCC-CCc-----------cCCCCcccccHHH
Q 038130          371 VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILEL-PDS-----------LEKNNFERIPESI  438 (526)
Q Consensus       371 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~-----------l~~~~l~~lp~~l  438 (526)
                         .++|+.|+++.|    ...   ..  ..+..+ ++|++|++++|.++++ |..           +++|.++.+|..+
T Consensus       225 ---~~~L~~L~l~~n----~l~---~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (390)
T 3o6n_A          225 ---NVELTILKLQHN----NLT---DT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG  291 (390)
T ss_dssp             ---CSSCCEEECCSS----CCC---CC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred             ---cccccEEECCCC----CCc---cc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc
Confidence               134444554222    111   10  112233 3788888888877764 222           6777777777777


Q ss_pred             hccCCCCEecccCCccCCcCCCc---cccccccccccccccccC--CCCCCCCEEeccCCCCC
Q 038130          439 IQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI--SYKSSTQLFDLSDNFKL  496 (526)
Q Consensus       439 ~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l--~~~~~L~~L~l~~c~~l  496 (526)
                      ..+++|+.|++++| .+..+|..   +++|+.|+++++. +..+  ..+++|+.|++++|+--
T Consensus       292 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          292 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSCEE
T ss_pred             CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCCcc
Confidence            77888888888888 45566643   4678888888765 3333  36889999999999643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2.8e-20  Score=184.63  Aligned_cols=242  Identities=17%  Similarity=0.266  Sum_probs=149.2

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..++++|++++| .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus        65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~  140 (347)
T 4fmz_A           65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG  140 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred             cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence            456777777775 4455555 6777777777777763 5556667777777778877777777665 7777777777777


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|.....++. +..+++|++|++++|.. ..++. +..+++|+ .|++++|.+ ..++. +... ++|+.|++..+    
T Consensus       141 ~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~-~L~l~~n~l-~~~~~-~~~l-~~L~~L~l~~n----  209 (347)
T 4fmz_A          141 ANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLY-SLSLNYNQI-EDISP-LASL-TSLHYFTAYVN----  209 (347)
T ss_dssp             TCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCS-EEECTTSCC-CCCGG-GGGC-TTCCEEECCSS----
T ss_pred             CCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCC-EEEccCCcc-ccccc-ccCC-CccceeecccC----
Confidence            7765555444 67777777777777543 33332 66777777 777777776 44444 3333 67777777332    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      ......   .  +..+ ++|+.|++++|.++++|..          +++|.++.++ .+..+++|+.|++++| .+..+|
T Consensus       210 ~l~~~~---~--~~~~-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~  281 (347)
T 4fmz_A          210 QITDIT---P--VANM-TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDIS  281 (347)
T ss_dssp             CCCCCG---G--GGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred             CCCCCc---h--hhcC-CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCCh
Confidence            111111   0  2222 3777777777766665432          5555665554 4566667777777766 344444


Q ss_pred             C--cccccccccccccccccc----CCCCCCCCEEeccCCC
Q 038130          460 K--LPFNLQGIFAHHCTALSS----ISYKSSTQLFDLSDNF  494 (526)
Q Consensus       460 ~--~~~~L~~L~l~~c~~L~~----l~~~~~L~~L~l~~c~  494 (526)
                      .  .+++|+.|++++|.-...    +..+++|++|++++|+
T Consensus       282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            3  245666666666643222    2246667777777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=6.5e-21  Score=199.96  Aligned_cols=102  Identities=20%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ++++|++++|......|..+.++++|++|++++|......| .+..+++|++|++++|.++.+|..  .+++|++|++++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~   99 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF   99 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC
Confidence            44555555543322223345555555555555543222223 245555555555555555555444  455555555555


Q ss_pred             CccCc-ccCcCCCCCCCCcEEeecCC
Q 038130          311 CKRLK-SLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       311 ~~~~~-~lp~~i~~l~~L~~L~l~~~  335 (526)
                      |.+.+ .+|..++.+++|++|++++|
T Consensus       100 N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B          100 NAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             SCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             CccccccchhhhccCCcceEEEecCc
Confidence            54333 24444555555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=5e-22  Score=194.25  Aligned_cols=220  Identities=18%  Similarity=0.215  Sum_probs=180.8

Q ss_pred             CCCcEEeeCCCCCCC--cCCC-CCCCCcccEEEecc-cCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcE
Q 038130          255 EFLKKLNLLGCSKLK--RLPE-FSSSGKIEEIWLDG-TAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL  329 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~--~lp~-~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~  329 (526)
                      .+++.|++++|....  .+|. +..+++|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999987665  5665 89999999999994 8887 78999999999999999999987799999999999999


Q ss_pred             EeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcc
Q 038130          330 LNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL  409 (526)
Q Consensus       330 L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  409 (526)
                      |++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+.++|+.|+++.|    ...   +..+..+..+  .|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N----~l~---~~~~~~~~~l--~L  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTISRN----RLT---GKIPPTFANL--NL  199 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGCCCTTCCEEECCSS----EEE---EECCGGGGGC--CC
T ss_pred             EeCCCCccCCcCChHHhcCCCCC-eEECcCCcccCcCCHHHhhhhhcCcEEECcCC----eee---ccCChHHhCC--cc
Confidence            99999877778999999999999 99999999977999999888349999999544    211   1111112232  49


Q ss_pred             cEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--ccccccccccccccccccCC----CCC
Q 038130          410 TSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCTALSSIS----YKS  483 (526)
Q Consensus       410 ~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~~L~~l~----~~~  483 (526)
                      +.|++++|.+++           ..|..+..+++|+.|++++|...+.+|.  .+++|+.|+++++.--..++    .++
T Consensus       200 ~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          200 AFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             SEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             cEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence            999999997654           3467788999999999999976655554  36799999999886543443    689


Q ss_pred             CCCEEeccCCCC
Q 038130          484 STQLFDLSDNFK  495 (526)
Q Consensus       484 ~L~~L~l~~c~~  495 (526)
                      +|++|++++|+-
T Consensus       269 ~L~~L~Ls~N~l  280 (313)
T 1ogq_A          269 FLHSLNVSFNNL  280 (313)
T ss_dssp             TCCEEECCSSEE
T ss_pred             CCCEEECcCCcc
Confidence            999999999953

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=5.3e-20  Score=182.65  Aligned_cols=243  Identities=21%  Similarity=0.294  Sum_probs=193.7

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..+++.|+++++ .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+| .++.+++|++|+++
T Consensus        43 l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           43 LESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             cccccEEEEeCC-ccccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            367899999994 5566775 8889999999999975 666777999999999999999999886 59999999999999


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|.+ ..+|. +..+++|++|++++|.....++. +..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.    |
T Consensus       119 ~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~-~L~l~~~~~-~~~~~-~~~l-~~L~~L~l~~----n  187 (347)
T 4fmz_A          119 EDNI-SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN-YLTVTESKV-KDVTP-IANL-TDLYSLSLNY----N  187 (347)
T ss_dssp             TSCC-CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC-EEECCSSCC-CCCGG-GGGC-TTCSEEECTT----S
T ss_pred             CCcc-cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCc-EEEecCCCc-CCchh-hccC-CCCCEEEccC----C
Confidence            9874 45655 88999999999999877766554 89999999 999999998 55554 5555 9999999944    3


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      ......   .  +..+ ++|+.|++++|.+.+++..          +++|.++.+|. +..+++|+.|++++| .+..++
T Consensus       188 ~l~~~~---~--~~~l-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~  259 (347)
T 4fmz_A          188 QIEDIS---P--LASL-TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDIN  259 (347)
T ss_dssp             CCCCCG---G--GGGC-TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred             cccccc---c--ccCC-CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCCh
Confidence            321111   1  3333 4999999999998876532          78899998886 889999999999998 455555


Q ss_pred             C--cccccccccccccc--ccccCCCCCCCCEEeccCCCC
Q 038130          460 K--LPFNLQGIFAHHCT--ALSSISYKSSTQLFDLSDNFK  495 (526)
Q Consensus       460 ~--~~~~L~~L~l~~c~--~L~~l~~~~~L~~L~l~~c~~  495 (526)
                      .  .+++|+.|++++|.  .+..+..+++|+.|++++|+.
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC
Confidence            3  36799999999873  222344689999999999954

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.8e-20  Score=199.75  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             CcccEEEccCCCCCCC-CCc-----------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccc
Q 038130          407 TTLTSLYLNYCGILEL-PDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAH  471 (526)
Q Consensus       407 ~~L~~L~L~~~~~~~l-p~~-----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~  471 (526)
                      ++|+.|+|++|.++++ |..           +++|.++.+|..+..+++|+.|+|++|. +..+|..   +++|+.|+++
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECC
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECC
Confidence            3788888888877664 222           6777777777777778888888888874 4466643   5678888888


Q ss_pred             ccccccc--CCCCCCCCEEeccCCCCC
Q 038130          472 HCTALSS--ISYKSSTQLFDLSDNFKL  496 (526)
Q Consensus       472 ~c~~L~~--l~~~~~L~~L~l~~c~~l  496 (526)
                      +|.- ..  +..+++|+.|++++||--
T Consensus       333 ~N~l-~~~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          333 HNSI-VTLKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SSCC-CCCCCCTTCCCSEEECCSSCEE
T ss_pred             CCCC-CCcChhhcCCCCEEEeeCCCCC
Confidence            7653 33  335889999999998743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=5.3e-20  Score=196.74  Aligned_cols=260  Identities=18%  Similarity=0.095  Sum_probs=170.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L  308 (526)
                      ..+++|++++|......|..+.++++|++|++++|......|. +.++.+|++|++++|.+..+ |..++++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            3678999998665555577788899999999999865555554 88999999999999998855 668899999999999


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcc--eEEcccCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLY--ELSLDRSW  386 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~--~L~l~~~~  386 (526)
                      ++|.+....|..++++++|++|++++|...+.-+..+..+++|+ .|++++|.+.+..+..+..+ ++|+  .|+++.|.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK-VLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGND  190 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC-EEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC-EEEcccCcccccChhhhhhh-cccceeEEecCCCc
Confidence            99886665567788999999999998765543223344588888 99999998844445555555 7787  66664431


Q ss_pred             CCCCCCCC--------------------------------------------------------------------CCCc
Q 038130          387 GGDKQMGL--------------------------------------------------------------------SSPI  398 (526)
Q Consensus       387 ~~~~~~~~--------------------------------------------------------------------~~~~  398 (526)
                      ........                                                                    ....
T Consensus       191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            11000000                                                                    0000


Q ss_pred             ccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCcccc-cHHHhccCCCCEecccCCccCCcCCC----cc
Q 038130          399 TLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERI-PESIIQLSRLVVLNLNYCERLQSLPK----LP  462 (526)
Q Consensus       399 ~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~----~~  462 (526)
                      ...+..+ ++|++|++++|.++++|..           +++|.++.+ |..+..+++|+.|++++|...+.+|.    .+
T Consensus       271 ~~~~~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          271 SNTFHCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTTTC-TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HHHhccc-cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            0002222 3777788877777777664           566666655 34667777777777777765545543    24


Q ss_pred             ccccccccccccccc------cCCCCCCCCEEeccCC
Q 038130          463 FNLQGIFAHHCTALS------SISYKSSTQLFDLSDN  493 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~------~l~~~~~L~~L~l~~c  493 (526)
                      ++|+.|+++++.--.      .+..+++|++|++++|
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence            566666666543211      1223455555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=8.8e-21  Score=188.78  Aligned_cols=241  Identities=20%  Similarity=0.190  Sum_probs=180.7

Q ss_pred             CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~  307 (526)
                      ..+++|++++|. +..++. .+.++++|++|++++|......|. +.++++|++|++++|.++.+|.. ++++++|++|+
T Consensus        52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            478999999965 445554 788999999999999864444444 88999999999999999988877 89999999999


Q ss_pred             ccCCccCcccCc--CCCCCCCCcEEeecCCCCCCcC-CCcccCcccccceeeccccccccccChhhhcccCCcceEEccc
Q 038130          308 LSDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRL-PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR  384 (526)
Q Consensus       308 L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  384 (526)
                      +++|.+. .+|.  .+..+++|++|++++|...+.+ |..++++++|+ .|++++|.+.+..|..+..+ ++|++|+++.
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~  207 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDASDLQSYEPKSLKSI-QNVSHLILHM  207 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTTTTC-SEEEEEEEEC
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCCCCcCccCHHHHhcc-ccCCeecCCC
Confidence            9998744 5665  6889999999999998655555 56789999999 99999999966667777766 9999999955


Q ss_pred             CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------------------cCCCCcccccHHHhccCCC
Q 038130          385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------------------LEKNNFERIPESIIQLSRL  444 (526)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------------------l~~~~l~~lp~~l~~l~~L  444 (526)
                      |    ..    ...+..+....++|+.|++++|.+++++..                    ++++.+..+|.++..+++|
T Consensus       208 n----~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L  279 (353)
T 2z80_A          208 K----QH----ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL  279 (353)
T ss_dssp             S----CS----TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred             C----cc----ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence            4    21    111111122235999999999998875422                    2333344577778888888


Q ss_pred             CEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEEeccCCCCCCHHH
Q 038130          445 VVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNA  500 (526)
Q Consensus       445 ~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~  500 (526)
                      +.|++++| .++.+|..                .+..+++|++|++++|+-.....
T Consensus       280 ~~L~Ls~N-~l~~i~~~----------------~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          280 LELEFSRN-QLKSVPDG----------------IFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCC-CCCccCHH----------------HHhcCCCCCEEEeeCCCccCcCC
Confidence            88888887 34444421                12456889999999998777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=2.7e-20  Score=197.13  Aligned_cols=105  Identities=17%  Similarity=0.066  Sum_probs=74.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      .+++.|++++|......|..+.++++|++|++++|......|. +.++++|++|++++|.++.+|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            5678888888654444445677788888888888754433344 77788888888888888877776  67888888888


Q ss_pred             CCccCc-ccCcCCCCCCCCcEEeecCCCC
Q 038130          310 DCKRLK-SLPSSLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       310 ~~~~~~-~lp~~i~~l~~L~~L~l~~~~~  337 (526)
                      +|.+.+ .+|..++++++|++|++++|..
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcc
Confidence            877544 3456677777777777777543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=6.2e-21  Score=201.53  Aligned_cols=139  Identities=23%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      ..+++|++++|......|..+.++++|++|++++|......|. +..+.+|++|++++|.++.+|.. ++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4677777777654444456677777777777777654433333 77777777777777777766654 777777777777


Q ss_pred             cCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhh
Q 038130          309 SDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSI  370 (526)
Q Consensus       309 ~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l  370 (526)
                      ++|.+.+ ..|..++++++|++|++++|...+.+| ..++++++|+ .|++++|.+.+..|..+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcccccChhhh
Confidence            7776543 345667777777777777766555555 3566677777 77777766644444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=4.8e-20  Score=186.05  Aligned_cols=255  Identities=18%  Similarity=0.161  Sum_probs=165.2

Q ss_pred             cCcceEEEeccCCCCCCCChh-ccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130          230 VNTLVILNLSEYVSLNSLPAE-ILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL  306 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L  306 (526)
                      ...+++|+++++ .+..+|.. +..+++|++|++++|......+ .+..+.+|++|++++|.++.+|. .++++++|++|
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            367899999985 56667754 6789999999999986443334 48999999999999999997754 58999999999


Q ss_pred             eccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          307 YLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       307 ~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ++++|.+ ..+|.. +..+++|++|++++|......|..++++++|+ .|++++|.+ ..++.  ... ++|+.|+++.|
T Consensus       123 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~--~~l-~~L~~L~l~~n  196 (390)
T 3o6n_A          123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ-NLQLSSNRL-THVDL--SLI-PSLFHANVSYN  196 (390)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC-EEECCSSCC-SBCCG--GGC-TTCSEEECCSS
T ss_pred             ECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC-EEECCCCcC-Ccccc--ccc-cccceeecccc
Confidence            9999974 467765 58999999999999876666677799999999 999999998 44442  333 78888888543


Q ss_pred             CCCCCC----CC---C--CCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccc-cHHHhccCCCC
Q 038130          386 WGGDKQ----MG---L--SSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERI-PESIIQLSRLV  445 (526)
Q Consensus       386 ~~~~~~----~~---~--~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~l-p~~l~~l~~L~  445 (526)
                      ......    +.   .  ......+. ...++|+.|++++|.+++.+..          +++|.++.+ |..+..+++|+
T Consensus       197 ~l~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (390)
T 3o6n_A          197 LLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  275 (390)
T ss_dssp             CCSEEECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             cccccCCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence            110000    00   0  00000000 1123566666666655543221          455555543 44555556666


Q ss_pred             EecccCCccCCcCCC---ccccccccccccccccccCC----CCCCCCEEeccCCC
Q 038130          446 VLNLNYCERLQSLPK---LPFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNF  494 (526)
Q Consensus       446 ~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~  494 (526)
                      .|++++| .+..+|.   .+++|+.|++++|. +..++    .+++|+.|++++|+
T Consensus       276 ~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          276 RLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             EEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence            6666655 2333332   23456666665552 23332    25566666666664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=2e-20  Score=199.98  Aligned_cols=268  Identities=19%  Similarity=0.085  Sum_probs=191.8

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCc-ccCcc-ccCCCCCCEE
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIE-ELPSS-IGCLSRLLYL  306 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~-~lp~~-i~~L~~L~~L  306 (526)
                      ..+++.|++++| .+..+|..+..+++|++|++++|......| .+..+++|++|++++|.+. .+|.. ++.+++|++|
T Consensus       277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            367899999985 556888888889999999999876544444 4788888999999988876 66654 8888899999


Q ss_pred             eccCCccCccc--CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEccc
Q 038130          307 YLSDCKRLKSL--PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR  384 (526)
Q Consensus       307 ~L~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  384 (526)
                      ++++|.+.+..  |..+..+++|++|++++|......|..++++++|+ .|++++|.+.+..+......+++|+.|+++.
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS-EEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC-eEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            99888765544  66788888999999988776666677888888888 8888888885555554333348888888843


Q ss_pred             CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCC--CCCc-------------cCCCCcccc-cHHHhccCCCCEec
Q 038130          385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE--LPDS-------------LEKNNFERI-PESIIQLSRLVVLN  448 (526)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--lp~~-------------l~~~~l~~l-p~~l~~l~~L~~L~  448 (526)
                          |.....   .+..+..+ ++|++|++++|.+++  +|..             +++|.++.+ |..+..+++|+.|+
T Consensus       435 ----n~l~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          435 ----SLLDIS---SEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             ----CCCBTT---CTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ----CccCCc---CHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence                322111   11113333 388888888888765  2211             677777766 56788999999999


Q ss_pred             ccCCccCCcCCCcc---ccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHHHHHHHHH
Q 038130          449 LNYCERLQSLPKLP---FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAVRIIVEDA  508 (526)
Q Consensus       449 L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~  508 (526)
                      +++|...+..|..+   ++| .|+++++.-....+    .+++|+.|++++||-.......++.+..
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            99997666555543   455 77777775443322    4789999999999977666555544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.1e-20  Score=181.00  Aligned_cols=235  Identities=18%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             cceEEEeccCCCCCCCChh-ccccCCCcEEeeCCCCCCCcC---C-CCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          232 TLVILNLSEYVSLNSLPAE-ILHLEFLKKLNLLGCSKLKRL---P-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l---p-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      .+++|++++|. +..+|.. +.++++|++|++++|.. ..+   + .+..+.+|++|++++|.+..+|..+..+++|++|
T Consensus        29 ~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred             CCCEEECCCCc-cCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence            44555555532 3334332 34555555555555432 211   1 2334455555555555555555555555555555


Q ss_pred             eccCCccCcccC-cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEccc
Q 038130          307 YLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDR  384 (526)
Q Consensus       307 ~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~  384 (526)
                      ++++|.+....+ ..+..+++|++|++++|......|..+.++++|+ .|++++|.+.+ .+|..+..+ ++|+.|+++.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~  184 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQ  184 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTC-TTCCEEECTT
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-EEECCCCccccccchhHHhhC-cCCCEEECCC
Confidence            555554322211 2345555555555555444334444455555555 55555555532 234333333 5555555522


Q ss_pred             CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccc
Q 038130          385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN  464 (526)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~  464 (526)
                      |    ..   ....+..+..+. +|+.|++++|.++++|           +..+..+++|+.|++++|...+..|     
T Consensus       185 n----~l---~~~~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~-----  240 (306)
T 2z66_A          185 C----QL---EQLSPTAFNSLS-SLQVLNMSHNNFFSLD-----------TFPYKCLNSLQVLDYSLNHIMTSKK-----  240 (306)
T ss_dssp             S----CC---CEECTTTTTTCT-TCCEEECTTSCCSBCC-----------SGGGTTCTTCCEEECTTSCCCBCSS-----
T ss_pred             C----Cc---CCcCHHHhcCCC-CCCEEECCCCccCccC-----------hhhccCcccCCEeECCCCCCcccCH-----
Confidence            2    11   000011111222 5555555555443322           1233445555555555553222222     


Q ss_pred             ccccccccccccccCCCC-CCCCEEeccCCCCCCHHHHHHHHH
Q 038130          465 LQGIFAHHCTALSSISYK-SSTQLFDLSDNFKLDRNAVRIIVE  506 (526)
Q Consensus       465 L~~L~l~~c~~L~~l~~~-~~L~~L~l~~c~~l~~~~~~~~~~  506 (526)
                                  ..+..+ ++|+.|++++|+--......++.+
T Consensus       241 ------------~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~  271 (306)
T 2z66_A          241 ------------QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ  271 (306)
T ss_dssp             ------------SSCCCCCTTCCEEECTTCCEECSGGGHHHHH
T ss_pred             ------------HHHHhhhccCCEEEccCCCeecccChHHHHH
Confidence                        122334 489999999998655544444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=4.1e-20  Score=197.66  Aligned_cols=137  Identities=19%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L  308 (526)
                      ..+++|++++|......+..+.++++|++|++++|......|. +.++.+|++|++++|.++.+ |..++++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            4567777777544333444666777777777777653333343 66777777777777777755 666777777777777


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccCh
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPS  368 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~  368 (526)
                      ++|.+.+..|..++++++|++|++++|...+ .+|..++++++|+ +|++++|.+.+..+.
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTITVN  171 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSCCCEECTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCcceecChh
Confidence            7776544444567777777777777765443 4566777777777 777777766443333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=5.7e-20  Score=203.65  Aligned_cols=139  Identities=20%  Similarity=0.137  Sum_probs=110.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcC-C-CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRL-P-EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~l-p-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~  307 (526)
                      .++++|++++|......|..+.++++|++|++++|.....+ | .+.++++|++|+|++|.+..+ |..++++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            57889999987655555777888999999999998666666 3 388899999999999998865 77899999999999


Q ss_pred             ccCCccCcccCcC--CCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhh
Q 038130          308 LSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSI  370 (526)
Q Consensus       308 L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l  370 (526)
                      |++|.+.+.+|..  +.++++|++|++++|...+..| ..++++++|+ .|++++|.+.+..+..+
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCCCCCSGGG
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCCeeCHHHc
Confidence            9998876666665  8889999999999876655443 4688888898 89998888755555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=6.5e-20  Score=195.43  Aligned_cols=230  Identities=16%  Similarity=0.152  Sum_probs=151.3

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEe
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLY  307 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~  307 (526)
                      .+.+++|++++|......|..+..+++|++|++++|......|. +..+++|++|+|++|.++.+|.. ++++++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            35677888877554444445677778888888887654333333 57778888888888888777766 47778888888


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCccc-------------------------------------
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEA-------------------------------------  350 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~-------------------------------------  350 (526)
                      +++|.+.+..|..++.+++|++|++++|.... ++  ++.+++                                     
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~  230 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  230 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence            88877666666667778888888887764332 22  112222                                     


Q ss_pred             ---ccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--
Q 038130          351 ---SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--  425 (526)
Q Consensus       351 ---L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--  425 (526)
                         |+ .|++++|.+.+  +..+..+ ++|+.|+++.|    .   ..+..+..+..+. +|+.|+|++|.++++|..  
T Consensus       231 ~~~L~-~L~L~~n~l~~--~~~l~~l-~~L~~L~Ls~N----~---l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~  298 (597)
T 3oja_B          231 NVELT-ILKLQHNNLTD--TAWLLNY-PGLVEVDLSYN----E---LEKIMYHPFVKMQ-RLERLYISNNRLVALNLYGQ  298 (597)
T ss_dssp             CSCCC-EEECCSSCCCC--CGGGGGC-TTCSEEECCSS----C---CCEEESGGGTTCS-SCCEEECTTSCCCEEECSSS
T ss_pred             CCCCC-EEECCCCCCCC--ChhhccC-CCCCEEECCCC----c---cCCCCHHHhcCcc-CCCEEECCCCCCCCCCcccc
Confidence               33 44444444421  2334444 67777777433    1   1111122233444 899999999988876543  


Q ss_pred             ---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccccccc
Q 038130          426 ---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCT  474 (526)
Q Consensus       426 ---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~  474 (526)
                               +++|.++.+|.++..+++|+.|+|++|.....-+..+++|+.|++++++
T Consensus       299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred             cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence                     7888999999999999999999999996443333457899999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.3e-19  Score=186.21  Aligned_cols=238  Identities=16%  Similarity=0.108  Sum_probs=116.1

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..+++|++++|. +..+|  +..+++|++|++++|. +..++ +..+++|++|++++|.++.+|  ++.+++|++|++++
T Consensus        64 ~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           64 TGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             TTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred             CCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence            455555555532 33333  4455555555555543 33333 555555555555555555543  55555555555555


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC----
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW----  386 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----  386 (526)
                      |.+.+ ++  ++.+++|++|++++|...+.+  .++.+++|+ .|++++|.+ ..+|  +... ++|+.|+++.|.    
T Consensus       137 N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~-~L~ls~n~l-~~l~--l~~l-~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          137 NTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT-TLDCSFNKI-TELD--VSQN-KLLNRLNCDTNNITKL  206 (457)
T ss_dssp             SCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC-EEECCSSCC-CCCC--CTTC-TTCCEEECCSSCCSCC
T ss_pred             Cccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCC-EEECCCCcc-ceec--cccC-CCCCEEECcCCcCCee
Confidence            54332 22  445555555555554444433  244555555 555555555 3333  2222 455555553221    


Q ss_pred             -------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcc-----------c
Q 038130          387 -------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFE-----------R  433 (526)
Q Consensus       387 -------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~-----------~  433 (526)
                                   .++....      .++..+ ++|+.|++++|.++++|..         ++.++++           .
T Consensus       207 ~l~~l~~L~~L~Ls~N~l~~------ip~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~  279 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNKLTE------IDVTPL-TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY  279 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCSC------CCCTTC-TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             ccccCCCCCEEECcCCcccc------cCcccc-CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence                         1111000      112222 2555555555555544322         1111111           2


Q ss_pred             ccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccC------------CCCCCCCEEeccCCC
Q 038130          434 IPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSI------------SYKSSTQLFDLSDNF  494 (526)
Q Consensus       434 lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l------------~~~~~L~~L~l~~c~  494 (526)
                      +|  .+.+++|+.|++++|..++.+|...++|+.|++++|+.|+.+            ..+++|+.|++++|.
T Consensus       280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSC
T ss_pred             cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCC
Confidence            22  234566666777776666666655555666666665555443            246777777777764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=1.9e-19  Score=185.27  Aligned_cols=245  Identities=18%  Similarity=0.062  Sum_probs=162.4

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~  311 (526)
                      ..++.++ ..+..+|..+.  ++|++|++++|......|. +..+++|++|+|++|.++.++ ..+.++++|++|+|++|
T Consensus        57 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECC-CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            3455554 55667776543  6788888888654433343 778888888888888888665 56788888888888887


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ  391 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  391 (526)
                      .+....+..+..+++|++|++++|......+..+.++++|+ .|++++|+..+.++...+..+++|+.|+++.|    ..
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----~l  208 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLEYISEGAFEGLFNLKYLNLGMC----NI  208 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCTTCCEEECTTS----CC
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCccccChhhccCCCCCCEEECCCC----cc
Confidence            75544444577788888888888654433344677888888 88888754446676654444488888888443    22


Q ss_pred             CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cccccccc
Q 038130          392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LPFNLQGI  468 (526)
Q Consensus       392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L  468 (526)
                      ... +    .+..+ ++|+.|+|++|.+++++           |..+.++++|+.|++++|...+..|.   .+++|+.|
T Consensus       209 ~~~-~----~~~~l-~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          209 KDM-P----NLTPL-VGLEELEMSGNHFPEIR-----------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             SSC-C----CCTTC-TTCCEEECTTSCCSEEC-----------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccc-c----ccccc-ccccEEECcCCcCcccC-----------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            111 1    12233 38888888888765532           56777888888888888754333333   24678888


Q ss_pred             ccccccccccCC-----CCCCCCEEeccCCCCCCHHHHHHH
Q 038130          469 FAHHCTALSSIS-----YKSSTQLFDLSDNFKLDRNAVRII  504 (526)
Q Consensus       469 ~l~~c~~L~~l~-----~~~~L~~L~l~~c~~l~~~~~~~~  504 (526)
                      +++++ .+..++     .+++|+.|++++||--......++
T Consensus       272 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l  311 (452)
T 3zyi_A          272 NLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL  311 (452)
T ss_dssp             ECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred             ECCCC-cCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence            88876 334443     478999999999985444443333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=9.2e-20  Score=191.20  Aligned_cols=86  Identities=20%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc--cCccccCCCCCC
Q 038130          227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE--LPSSIGCLSRLL  304 (526)
Q Consensus       227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~  304 (526)
                      +.....+++|++++|......|..+.++++|++|++++|. ++.+|.. .+.+|++|++++|.++.  +|..++++++|+
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcce
Confidence            3445678899999865544457778889999999998875 5567766 78888999999888875  567888888888


Q ss_pred             EEeccCCccC
Q 038130          305 YLYLSDCKRL  314 (526)
Q Consensus       305 ~L~L~~~~~~  314 (526)
                      +|++++|.+.
T Consensus       119 ~L~L~~n~l~  128 (520)
T 2z7x_B          119 FLGLSTTHLE  128 (520)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEecCcccc
Confidence            8888887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=3.8e-19  Score=182.36  Aligned_cols=246  Identities=17%  Similarity=0.056  Sum_probs=157.3

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~  311 (526)
                      ..++..+ ..+..+|..+.  +++++|+|++|......+ .+..+.+|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus        46 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVR-KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCS-CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCC-CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            3455554 55667776553  677888888765333332 3777888888888888887665 45777888888888887


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ  391 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  391 (526)
                      .+....+..+..+++|++|++++|......+..+.++++|+ .|++++|+..+.++...+..+++|+.|+++.|    ..
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----~l  197 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLSYISEGAFEGLSNLRYLNLAMC----NL  197 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCSSCCEEECTTS----CC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcceeCcchhhcccccCeecCCCC----cC
Confidence            65443344577788888888887654433344677778888 88887754446666654444478888888433    21


Q ss_pred             CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cccccccc
Q 038130          392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LPFNLQGI  468 (526)
Q Consensus       392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L  468 (526)
                      ....     .+..+ ++|+.|+|++|.+++++           |..+..+++|+.|++++|......+.   .+++|+.|
T Consensus       198 ~~~~-----~~~~l-~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          198 REIP-----NLTPL-IKLDELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             SSCC-----CCTTC-SSCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             cccc-----ccCCC-cccCEEECCCCccCccC-----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            1111     12233 37888888887665532           45667778888888887743332232   24677778


Q ss_pred             ccccccccccC-----CCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130          469 FAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAVRIIV  505 (526)
Q Consensus       469 ~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~~~~~  505 (526)
                      +++++. ++.+     ..+++|+.|++++||--......++.
T Consensus       261 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~  301 (440)
T 3zyj_A          261 NLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS  301 (440)
T ss_dssp             ECTTSC-CCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred             ECCCCC-CCccChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence            877763 3333     35789999999999865544444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=5.3e-19  Score=181.64  Aligned_cols=194  Identities=19%  Similarity=0.175  Sum_probs=142.7

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ...+++|++++| .+..+| .+..+++|++|++++|. +..+| +..+++|++|++++|.++.+|  ++++++|++|+++
T Consensus        41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred             cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence            468999999996 555677 58899999999999975 55566 889999999999999999886  8999999999999


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|.+.+ +|  ++.+++|++|++++|... .++  ++++++|+ .|++++|...+.++  +..+ ++|+.|+++.|    
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~-~L~l~~n~~~~~~~--~~~l-~~L~~L~ls~n----  180 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLT-ELDCHLNKKITKLD--VTPQ-TQLTTLDCSFN----  180 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCC-EEECTTCSCCCCCC--CTTC-TTCCEEECCSS----
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCccc-eec--cccCCcCC-EEECCCCCcccccc--cccC-CcCCEEECCCC----
Confidence            997554 65  889999999999997644 454  88999999 99999996546663  4455 99999999554    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                      .... .     ++..+. +|+.|++++|.+++++-.         +++|.++.+|  +..+++|+.|++++|
T Consensus       181 ~l~~-l-----~l~~l~-~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          181 KITE-L-----DVSQNK-LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CCCC-C-----CCTTCT-TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred             ccce-e-----ccccCC-CCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence            2111 1     122222 566666666655554311         4555555555  455556666666555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=9.4e-20  Score=194.85  Aligned_cols=155  Identities=21%  Similarity=0.134  Sum_probs=125.7

Q ss_pred             hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEE
Q 038130          229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYL  306 (526)
Q Consensus       229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L  306 (526)
                      ....+++|++++|......|..+.++++|++|++++|......|. +.++.+|++|++++|.+..+| ..++++++|++|
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            346889999999765555577789999999999999875554464 899999999999999998776 679999999999


Q ss_pred             eccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccc---eeeccccccccccChhhhcccCCcceEEc
Q 038130          307 YLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNS---TLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       307 ~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~---~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      ++++|.+.+ .+|..++++++|++|++++|......|..++.+++|+.   .|++++|.+ ..++...+.. .+|+.|++
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~-~~L~~L~L  211 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG-IKLHELTL  211 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC-CEECTTTTTT-CEEEEEEE
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc-ceeCcccccC-ceeeeeec
Confidence            999998665 67999999999999999998766666777777776541   688888888 6677766666 47888888


Q ss_pred             ccC
Q 038130          383 DRS  385 (526)
Q Consensus       383 ~~~  385 (526)
                      +.|
T Consensus       212 ~~n  214 (606)
T 3vq2_A          212 RGN  214 (606)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=5.3e-19  Score=174.16  Aligned_cols=232  Identities=20%  Similarity=0.255  Sum_probs=176.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~  307 (526)
                      ..++.+++++ ..+..+|..+.  +.|++|++++|. ++.++  .+..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus        31 c~l~~l~~~~-~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTT-SCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecC-CCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            3578889888 45677887553  789999999976 44444  388999999999999999976 78899999999999


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc--ccChhhhcccCCcceEEcccC
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR--EVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      +++|. +..+|..+.  ++|++|++++|......+..+.++++|+ .|++++|.+..  ..+..+..+ ++|+.|+++.|
T Consensus       107 Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n  181 (330)
T 1xku_A          107 LSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQGM-KKLSYIRIADT  181 (330)
T ss_dssp             CCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC-EEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSS
T ss_pred             CCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc-EEECCCCcCCccCcChhhccCC-CCcCEEECCCC
Confidence            99987 457887664  7999999999765555555688999999 99999998832  445556555 99999999543


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cc
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LP  462 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~  462 (526)
                          .......       ...++|++|++++|.+++++           |..+..+++|+.|++++|...+..+.   .+
T Consensus       182 ----~l~~l~~-------~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          182 ----NITTIPQ-------GLPPSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             ----CCCSCCS-------SCCTTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ----ccccCCc-------cccccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence                2211111       11259999999999765532           56788999999999999954333332   25


Q ss_pred             ccccccccccccccccCC----CCCCCCEEeccCCC
Q 038130          463 FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNF  494 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~  494 (526)
                      ++|+.|+++++. +..++    .+++|++|++++|+
T Consensus       240 ~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          240 PHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence            789999999884 34544    58999999999995

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=3.6e-19  Score=192.92  Aligned_cols=153  Identities=17%  Similarity=0.103  Sum_probs=95.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L  308 (526)
                      .++++|++++|......+..+.++++|++|++++|......|. +..+++|++|++++|.++.+|. .++++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4567777777543333334567777777777777654433343 5667777777777777776665 4777777777777


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhc-ccCCcceEEccc
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG-SNNNLYELSLDR  384 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~-~~~~L~~L~l~~  384 (526)
                      ++|.+.+..|..++++++|++|++++|......|..++++++|+ .|++++|.+.+..+..+.. .+++|+.|+++.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-ELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC-EEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC-EEEccCCcccccCHHHhhccccccccEEECCC
Confidence            77765444445667777777777777665555566667777777 7777777663333332211 125677777744

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.6e-19  Score=185.92  Aligned_cols=220  Identities=22%  Similarity=0.214  Sum_probs=170.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      ..+++|++++|......+..+.++++|++|++++|......+ .+.++.+|++|+|++|.++.+|.. ++.+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            578999999976655567788999999999999986444443 388999999999999999988765 889999999999


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      ++|.+....+..+.++++|++|++++|+.++.+|. .+.++++|+ .|++++|.+ ..+|. +..+ ++|+.|+++.|  
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l-~~~~~-~~~l-~~L~~L~Ls~N--  228 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK-YLNLGMCNI-KDMPN-LTPL-VGLEELEMSGN--  228 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC-EEECTTSCC-SSCCC-CTTC-TTCCEEECTTS--
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC-EEECCCCcc-ccccc-cccc-ccccEEECcCC--
Confidence            99986654555788999999999999888888876 588999999 999999999 66664 5555 99999999544  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC----ccc
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK----LPF  463 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~~~  463 (526)
                        .   .....+..+.++. +|+.|++++|.++.++           |..+..+++|+.|+|++| .+..+|.    .++
T Consensus       229 --~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          229 --H---FPEIRPGSFHGLS-SLKKLWVMNSQVSLIE-----------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR  290 (452)
T ss_dssp             --C---CSEECGGGGTTCT-TCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred             --c---CcccCcccccCcc-CCCEEEeCCCcCceEC-----------HHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence              2   1221222244454 9999999999876543           456778888999999888 4556653    246


Q ss_pred             ccccccccccc
Q 038130          464 NLQGIFAHHCT  474 (526)
Q Consensus       464 ~L~~L~l~~c~  474 (526)
                      +|+.|++++++
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            78888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=6.5e-19  Score=173.68  Aligned_cols=243  Identities=22%  Similarity=0.252  Sum_probs=186.2

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCccc-CccccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~  309 (526)
                      .++.++++++ .+..+|..+  .++|++|++++|......| .+..+++|++|++++|.++.+ |..++++++|++|+++
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5789999884 567888766  4799999999986443334 489999999999999999976 7789999999999999


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc--ccChhhhcccCCcceEEcccCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR--EVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      +|. +..+|..+.  ++|++|++++|......+..+.++++|+ .|++++|.+..  ..+..+ ..+ +|+.|+++.|  
T Consensus       111 ~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~-~~l-~L~~L~l~~n--  182 (332)
T 2ft3_A          111 KNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN-CIEMGGNPLENSGFEPGAF-DGL-KLNYLRISEA--  182 (332)
T ss_dssp             SSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC-EEECCSCCCBGGGSCTTSS-CSC-CCSCCBCCSS--
T ss_pred             CCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC-EEECCCCccccCCCCcccc-cCC-ccCEEECcCC--
Confidence            987 457887665  8999999999765544444689999999 99999998842  334444 332 8999999543  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HHhccCCCCEecccCCcc
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~  454 (526)
                        .....    +.   ...++|++|++++|.+++++..            +++|.++.++. ++..+++|+.|++++| .
T Consensus       183 --~l~~l----~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~  252 (332)
T 2ft3_A          183 --KLTGI----PK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-K  252 (332)
T ss_dssp             --BCSSC----CS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-C
T ss_pred             --CCCcc----Cc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-c
Confidence              22111    11   1225999999999999887632            78889988774 7889999999999998 5


Q ss_pred             CCcCCCc---cccccccccccccccccCC-----------CCCCCCEEeccCCCCC
Q 038130          455 LQSLPKL---PFNLQGIFAHHCTALSSIS-----------YKSSTQLFDLSDNFKL  496 (526)
Q Consensus       455 l~~lp~~---~~~L~~L~l~~c~~L~~l~-----------~~~~L~~L~l~~c~~l  496 (526)
                      +..+|..   +++|+.|+++++. ++.++           ..++|+.|++++||..
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence            6688863   5689999998864 33332           1467999999999854

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=4e-19  Score=171.26  Aligned_cols=230  Identities=25%  Similarity=0.357  Sum_probs=159.8

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  310 (526)
                      +.++.++ ..+..+|..+  .++|++|++++|. +..++ . +..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCS-SCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCc-CCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            4666666 5667777644  5689999998875 44444 3 78888999999998888866 66788899999999998


Q ss_pred             CccCccc-CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          311 CKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       311 ~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      |..++.+ |..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..++......+++|+.|+++.|    
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n----  163 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-YLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN----  163 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC-EEECCCCcc-cccCHhHhccCCCccEEECCCC----
Confidence            8634444 67788889999999998776666677788888898 999999888 5555543333388888888443    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccc
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIF  469 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~  469 (526)
                      ..   .......+.++ ++|+.|++++|.++++           .|.++..+++|+.|++++|. +..+|.         
T Consensus       164 ~l---~~~~~~~~~~l-~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~-l~~~~~---------  218 (285)
T 1ozn_A          164 RI---SSVPERAFRGL-HSLDRLLLHQNRVAHV-----------HPHAFRDLGRLMTLYLFANN-LSALPT---------  218 (285)
T ss_dssp             CC---CEECTTTTTTC-TTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSC-CSCCCH---------
T ss_pred             cc---cccCHHHhcCc-cccCEEECCCCccccc-----------CHhHccCcccccEeeCCCCc-CCcCCH---------
Confidence            21   11111112333 3888888888876542           25667778888888888883 333321         


Q ss_pred             cccccccccCCCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130          470 AHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIV  505 (526)
Q Consensus       470 l~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~~~~~~  505 (526)
                             ..+..+++|+.|++++|+-.......++.
T Consensus       219 -------~~~~~l~~L~~L~l~~N~~~c~~~~~~~~  247 (285)
T 1ozn_A          219 -------EALAPLRALQYLRLNDNPWVCDCRARPLW  247 (285)
T ss_dssp             -------HHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             -------HHcccCcccCEEeccCCCccCCCCcHHHH
Confidence                   12335678889999998866555544443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2e-19  Score=184.55  Aligned_cols=218  Identities=23%  Similarity=0.274  Sum_probs=165.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~  307 (526)
                      ..++.|++++|......+..+.++++|++|++++|. +..++  .+.++.+|++|+|++|.++.+|. .+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            567899999976554555778899999999999976 44444  38889999999999999998876 589999999999


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW  386 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  386 (526)
                      +++|.+....+..+..+++|++|++++|+.+..++. .+.++++|+ .|++++|.+ ..+|. +..+ ++|+.|+++.| 
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l-~~~~~-~~~l-~~L~~L~Ls~N-  217 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-YLNLAMCNL-REIPN-LTPL-IKLDELDLSGN-  217 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC-EEECTTSCC-SSCCC-CTTC-SSCCEEECTTS-
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC-eecCCCCcC-ccccc-cCCC-cccCEEECCCC-
Confidence            999986655555788999999999999888887776 588899999 999999999 67774 5555 89999999544 


Q ss_pred             CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC----cc
Q 038130          387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK----LP  462 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~~  462 (526)
                         ..   ....+..+.++. +|+.|++++|.++.++           |..+..+++|+.|+|++| .+..+|.    .+
T Consensus       218 ---~l---~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          218 ---HL---SAIRPGSFQGLM-HLQKLWMIQSQIQVIE-----------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             ---CC---CEECTTTTTTCT-TCCEEECTTCCCCEEC-----------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             ---cc---CccChhhhccCc-cCCEEECCCCceeEEC-----------hhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence               21   111122244444 9999999999876643           445667788888888887 4445553    24


Q ss_pred             ccccccccccc
Q 038130          463 FNLQGIFAHHC  473 (526)
Q Consensus       463 ~~L~~L~l~~c  473 (526)
                      ++|+.|+++++
T Consensus       279 ~~L~~L~L~~N  289 (440)
T 3zyj_A          279 HHLERIHLHHN  289 (440)
T ss_dssp             TTCCEEECCSS
T ss_pred             cCCCEEEcCCC
Confidence            57777777754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=2.8e-19  Score=184.26  Aligned_cols=112  Identities=21%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             eeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------
Q 038130          354 TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------  425 (526)
Q Consensus       354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------  425 (526)
                      .|++++|.+.+..|..+..+ ++|+.|+++.|    ..   ....+..+.++. +|+.|++++|.+++++..        
T Consensus       279 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n----~l---~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          279 TCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN----EI---NKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTC-TTCCEEECTTS----CC---CEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             EEEecCccccccchhhcccC-CCCCEEECCCC----cc---cccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccC
Confidence            44444444433333334333 66777777333    11   111111233444 899999999988775432        


Q ss_pred             ----cCCCCcccc-cHHHhccCCCCEecccCCccCCcCCC----ccccccccccccccc
Q 038130          426 ----LEKNNFERI-PESIIQLSRLVVLNLNYCERLQSLPK----LPFNLQGIFAHHCTA  475 (526)
Q Consensus       426 ----l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~c~~  475 (526)
                          +++|.++.+ |.++..+++|+.|++++| .++.+|.    .+++|+.|++++++-
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence                788888877 678899999999999998 4556664    357899999987654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=5.6e-19  Score=170.23  Aligned_cols=204  Identities=22%  Similarity=0.222  Sum_probs=160.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccC-Cccc-CccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTA-IEEL-PSSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~  307 (526)
                      ..++.|++++|......+..+..+++|++|++++|......| .+..+++|++|++++|. ++.+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            578999999965444444678899999999999986444435 48899999999999997 8877 67799999999999


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      +++|.+....|..+..+++|++|++++|......+..++++++|+ .|++++|.+ ..++......+++|+.|+++.|  
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n--  187 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN--  187 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CEECTTTTTTCTTCCEEECCSS--
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-EEECCCCcc-cccCHHHhcCccccCEEECCCC--
Confidence            999987776678889999999999999765554455689999999 999999999 5666653343499999999554  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL  455 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l  455 (526)
                        ..   ....+..+..+. +|+.|++++|.++++|           +..+..+++|+.|++++|+..
T Consensus       188 --~l---~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          188 --RV---AHVHPHAFRDLG-RLMTLYLFANNLSALP-----------TEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             --CC---CEECTTTTTTCT-TCCEEECCSSCCSCCC-----------HHHHTTCTTCCEEECCSSCEE
T ss_pred             --cc---cccCHhHccCcc-cccEeeCCCCcCCcCC-----------HHHcccCcccCEEeccCCCcc
Confidence              21   111122233444 9999999999876644           467889999999999999744

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=2.9e-19  Score=188.66  Aligned_cols=92  Identities=25%  Similarity=0.183  Sum_probs=58.1

Q ss_pred             cccEEEccCCCCCCCCCc-----------cCCCCcccccHHH------------------hccCCCCEecccCCccCCcC
Q 038130          408 TLTSLYLNYCGILELPDS-----------LEKNNFERIPESI------------------IQLSRLVVLNLNYCERLQSL  458 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l------------------~~l~~L~~L~L~~~~~l~~l  458 (526)
                      +|++|++++|.++.+|..           +++|.++.+|..+                  ..+++|+.|++++| .++.+
T Consensus       388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i  466 (549)
T 2z81_A          388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL  466 (549)
T ss_dssp             TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC
T ss_pred             CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC
Confidence            666666666666666543           4445554444321                  24667777777776 44566


Q ss_pred             CCc--cccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHHH
Q 038130          459 PKL--PFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAV  501 (526)
Q Consensus       459 p~~--~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~  501 (526)
                      |..  +++|+.|+++++. ++.+     ..+++|+.|++++||-......
T Consensus       467 p~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          467 PDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            642  5677777777763 3332     3478999999999997776663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=2.6e-18  Score=182.03  Aligned_cols=229  Identities=25%  Similarity=0.301  Sum_probs=169.0

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ++++.|++++| .+..+|.   .+++|++|++++|. ++.+|.  .+++|++|++++|.++.+|.   .+++|++|++++
T Consensus        61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred             CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence            56788888885 4556776   46788888888865 556666  67888888888888888876   567888888888


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |. +..+|..   +++|++|++++|. +..+|..+   .+|+ .|++++|.+ ..+|    ..+++|+.|+++.|    .
T Consensus       131 N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~---~~L~-~L~L~~N~l-~~l~----~~~~~L~~L~Ls~N----~  192 (622)
T 3g06_A          131 NQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELC-KLWAYNNQL-TSLP----MLPSGLQELSVSDN----Q  192 (622)
T ss_dssp             SC-CSCCCCC---CTTCCEEECCSSC-CSCCCCCC---TTCC-EEECCSSCC-SCCC----CCCTTCCEEECCSS----C
T ss_pred             CC-CCcCCCC---CCCCCEEECcCCc-CCCcCCcc---CCCC-EEECCCCCC-CCCc----ccCCCCcEEECCCC----C
Confidence            76 4457663   4788888888864 45566543   3455 888888888 5566    22388888888443    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcc
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP  462 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~  462 (526)
                      .... +       ..+++|+.|++++|.++.+|..        +++|.++.+|   ..+++|+.|++++| .+..+|..+
T Consensus       193 l~~l-~-------~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~  260 (622)
T 3g06_A          193 LASL-P-------TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLP  260 (622)
T ss_dssp             CSCC-C-------CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCC
T ss_pred             CCCC-C-------CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCccc
Confidence            1111 1       1224888888888888887754        7788888888   56799999999998 677899888


Q ss_pred             ccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHH
Q 038130          463 FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAV  501 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~  501 (526)
                      ++|+.|++++| .+..++    .+++|+.|++++|+- .....
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l-~~~~~  301 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL-SERTL  301 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC-CHHHH
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC-CCcCH
Confidence            99999999987 444554    589999999999974 44433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=2.8e-19  Score=175.10  Aligned_cols=223  Identities=16%  Similarity=0.056  Sum_probs=167.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      .+++.|++++|......|..+..+++|++|++++|. +...+.+..+++|++|++++|.++.+|.    .++|++|++++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~  108 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCccccccC----CCCcCEEECCC
Confidence            478999999975555555788999999999999976 4444458899999999999999987763    38999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+.+..+.   .+++|++|++++|......|..++.+++|+ .|++++|.+.+..+..+...+++|+.|+++.|    .
T Consensus       109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N----~  180 (317)
T 3o53_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F  180 (317)
T ss_dssp             SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTS----C
T ss_pred             CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC-EEECCCCCCCcccHHHHhhccCcCCEEECCCC----c
Confidence            986554433   478899999999876666666888999999 99999999955556666544599999999544    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccc
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFA  470 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l  470 (526)
                      ......     ... .++|+.|++++|.++            .+|..+..+++|+.|++++| .+..+|.          
T Consensus       181 l~~~~~-----~~~-l~~L~~L~Ls~N~l~------------~l~~~~~~l~~L~~L~L~~N-~l~~l~~----------  231 (317)
T 3o53_A          181 IYDVKG-----QVV-FAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNN-KLVLIEK----------  231 (317)
T ss_dssp             CCEEEC-----CCC-CTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTS-CCCEECT----------
T ss_pred             Cccccc-----ccc-cccCCEEECCCCcCC------------cchhhhcccCcccEEECcCC-cccchhh----------
Confidence            211111     112 349999999998654            45556888999999999998 3444442          


Q ss_pred             ccccccccCCCCCCCCEEeccCCCCCCHHHHH
Q 038130          471 HHCTALSSISYKSSTQLFDLSDNFKLDRNAVR  502 (526)
Q Consensus       471 ~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~~~  502 (526)
                             .+..+++|+.|++++|+-.......
T Consensus       232 -------~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          232 -------ALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             -------TCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             -------HhhcCCCCCEEEccCCCccCcCHHH
Confidence                   2345688999999999766444333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=4.9e-19  Score=187.78  Aligned_cols=145  Identities=19%  Similarity=0.166  Sum_probs=87.6

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L  308 (526)
                      ..++.|++++|......+..+.++++|++|++++|......|. +.++++|++|++++|.++.+| ..++++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            3567777777543333344566677777777777643322232 667777777777777776554 45677777777777


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCc
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNL  377 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L  377 (526)
                      ++|.+....+..++++++|++|++++|.... .+|..++++++|+ .|++++|.+.+..+..+..+ ++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l-~~L  175 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVL-HQM  175 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECTTSCCCEECGGGGHHH-HTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCC-EEeCcCCccceecHHHccch-hcc
Confidence            7765333222246677777777777755443 3566677777777 77777776633333333333 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=4.1e-19  Score=184.13  Aligned_cols=220  Identities=16%  Similarity=0.060  Sum_probs=170.1

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ++++.|++++|......|..+..+++|++|++++|. +...+.+..+++|++|++++|.++.+|..    ++|++|++++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~  108 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN  108 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence            378999999976655556789999999999999976 44444489999999999999999887743    8999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+.+..+.   .+++|++|++++|...+..|..++++++|+ .|++++|.+.+..|..+...+++|+.|+++.|    .
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N----~  180 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F  180 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTS----C
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCC----c
Confidence            986554443   478999999999887777788899999999 99999999977777777744599999999554    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccc
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFA  470 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l  470 (526)
                      ....   .  +... .++|+.|+|++|.+++            +|..+..+++|+.|++++|. +..+|.          
T Consensus       181 l~~~---~--~~~~-l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~-l~~lp~----------  231 (487)
T 3oja_A          181 IYDV---K--GQVV-FAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNK-LVLIEK----------  231 (487)
T ss_dssp             CCEE---E--CCCC-CTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSC-CCEECT----------
T ss_pred             cccc---c--cccc-CCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCc-Ccccch----------
Confidence            1111   1  1112 3599999999986554            45568889999999999984 444442          


Q ss_pred             ccccccccCCCCCCCCEEeccCCCCCCHH
Q 038130          471 HHCTALSSISYKSSTQLFDLSDNFKLDRN  499 (526)
Q Consensus       471 ~~c~~L~~l~~~~~L~~L~l~~c~~l~~~  499 (526)
                             .+..+++|+.|++++|+-....
T Consensus       232 -------~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          232 -------ALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             -------TCCCCTTCCEEECTTCCBCHHH
T ss_pred             -------hhccCCCCCEEEcCCCCCcCcc
Confidence                   2345678899999998766443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=2.1e-18  Score=182.64  Aligned_cols=263  Identities=20%  Similarity=0.136  Sum_probs=180.6

Q ss_pred             hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccC--ccccCCCCCCEE
Q 038130          229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELP--SSIGCLSRLLYL  306 (526)
Q Consensus       229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L  306 (526)
                      ...++++|++++|......|..+.++++|++|++++|. +..+|.. .+.+|++|++++|.++.+|  ..++++++|++|
T Consensus        74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L  151 (562)
T 3a79_B           74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL  151 (562)
T ss_dssp             TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred             cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence            34678899999875554557778888999999999875 5577766 7888899999999888654  678888888888


Q ss_pred             eccCCccCcc-------------------------cCcCCCCC--------------------------C----------
Q 038130          307 YLSDCKRLKS-------------------------LPSSLSQL--------------------------K----------  325 (526)
Q Consensus       307 ~L~~~~~~~~-------------------------lp~~i~~l--------------------------~----------  325 (526)
                      ++++|.+...                         .|..+..+                          +          
T Consensus       152 ~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  231 (562)
T 3a79_B          152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN  231 (562)
T ss_dssp             EEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred             ecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence            8888764321                         11111111                          1          


Q ss_pred             ---------------------------------------------CCcEEeecCCCCCCcCCCcc---------------
Q 038130          326 ---------------------------------------------SLKLLNLHGCSNLQRLPDDF---------------  345 (526)
Q Consensus       326 ---------------------------------------------~L~~L~l~~~~~~~~lp~~~---------------  345 (526)
                                                                   +|++|++++|...+.+|..+               
T Consensus       232 ~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~  311 (562)
T 3a79_B          232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH  311 (562)
T ss_dssp             STTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred             ccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence                                                         34444444433333455443               


Q ss_pred             --------------------------------------cCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          346 --------------------------------------GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       346 --------------------------------------~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                                                            +.+++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|  
T Consensus       312 ~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N--  387 (562)
T 3a79_B          312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT-FLNFTQNVFTDSVFQGCSTL-KRLQTLILQRN--  387 (562)
T ss_dssp             EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC-EEECCSSCCCTTTTTTCCSC-SSCCEEECCSS--
T ss_pred             cccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce-EEECCCCccccchhhhhccc-CCCCEEECCCC--
Confidence                                                  5677888 99999999966677777666 99999999544  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCC-CCCc------------cCCCCcc-cccHHHhcc-CCCCEecccCC
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE-LPDS------------LEKNNFE-RIPESIIQL-SRLVVLNLNYC  452 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~------------l~~~~l~-~lp~~l~~l-~~L~~L~L~~~  452 (526)
                        ... ..+..+..+..+. +|+.|++++|.+++ +|..            +++|.++ .+|.   .+ ++|+.|++++|
T Consensus       388 --~l~-~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N  460 (562)
T 3a79_B          388 --GLK-NFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNN  460 (562)
T ss_dssp             --CCC-BTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---SCCTTCSEEECCSS
T ss_pred             --CcC-CcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---hhcCcCCEEECCCC
Confidence              211 1111111233444 89999999998887 6653            6667664 2332   33 69999999998


Q ss_pred             ccCCcCCCc---cccccccccccccccccCC-----CCCCCCEEeccCCCCCCHHHHHHHHH
Q 038130          453 ERLQSLPKL---PFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDNFKLDRNAVRIIVE  506 (526)
Q Consensus       453 ~~l~~lp~~---~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c~~l~~~~~~~~~~  506 (526)
                       .++.+|..   +++|+.|+++++. ++.++     .+++|+.|++++||--......++.+
T Consensus       461 -~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          461 -RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             -CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred             -cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence             66788763   5789999998864 33443     57899999999999887777766655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=2.2e-18  Score=178.00  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..++++|++++| .+..++. +.++++|++|++++|. +..++.+..+++|++|++++|.++.+|. ++++++|++|+++
T Consensus        67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~  142 (466)
T 1o6v_A           67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS  142 (466)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred             hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence            345666666664 3344444 5556666666666643 3333335556666666666666655544 5556666666665


Q ss_pred             CCc
Q 038130          310 DCK  312 (526)
Q Consensus       310 ~~~  312 (526)
                      +|.
T Consensus       143 ~n~  145 (466)
T 1o6v_A          143 SNT  145 (466)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=3.3e-19  Score=183.03  Aligned_cols=232  Identities=21%  Similarity=0.271  Sum_probs=145.1

Q ss_pred             CcceEEEeccCCCCCCCChhccccCC-------------CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEF-------------LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSI  297 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~-------------L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i  297 (526)
                      +.+++|++++|...+.+|..++++++             +++|++++|. ++.+|.+  .++|++|++++|.++.+|..+
T Consensus        34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~--~~~L~~L~l~~n~l~~lp~~~  110 (454)
T 1jl5_A           34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL--PPHLESLVASCNSLTELPELP  110 (454)
T ss_dssp             CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC--CTTCSEEECCSSCCSSCCCCC
T ss_pred             cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC--cCCCCEEEccCCcCCcccccc
Confidence            45666777766555566666665554             3777777764 5556653  357788888888888777543


Q ss_pred             cCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCc
Q 038130          298 GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNL  377 (526)
Q Consensus       298 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L  377 (526)
                         .+|++|++++|.+ ..+|..   .++|++|++++|.. ..+| .++++++|+ .|++++|.+ ..+|..+    .+|
T Consensus       111 ---~~L~~L~l~~n~l-~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~-~L~l~~N~l-~~lp~~~----~~L  175 (454)
T 1jl5_A          111 ---QSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLK-IIDVDNNSL-KKLPDLP----PSL  175 (454)
T ss_dssp             ---TTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCC-EEECCSSCC-SCCCCCC----TTC
T ss_pred             ---CCCcEEECCCCcc-CcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCC-EEECCCCcC-cccCCCc----ccc
Confidence               6777777777653 334431   25788888887644 4477 478888888 888888877 4566533    578


Q ss_pred             ceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecc
Q 038130          378 YELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNL  449 (526)
Q Consensus       378 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L  449 (526)
                      +.|+++.|    ..... +    .+.++. +|+.|++++|.++++|..        +++|.++.+|. +..+++|+.|++
T Consensus       176 ~~L~L~~n----~l~~l-~----~~~~l~-~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l  244 (454)
T 1jl5_A          176 EFIAAGNN----QLEEL-P----ELQNLP-FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYA  244 (454)
T ss_dssp             CEEECCSS----CCSSC-C----CCTTCT-TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEEC
T ss_pred             cEEECcCC----cCCcC-c----cccCCC-CCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEEC
Confidence            88888433    21111 1    133333 777778877777776553        66777777773 667777777777


Q ss_pred             cCCccCCcCCCccccccccccccccccccCC-CCCCCCEEeccCC
Q 038130          450 NYCERLQSLPKLPFNLQGIFAHHCTALSSIS-YKSSTQLFDLSDN  493 (526)
Q Consensus       450 ~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c  493 (526)
                      ++| .+..+|..+++|+.|+++++. +..++ .+++|+.|++++|
T Consensus       245 ~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          245 DNN-LLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CSS-CCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CCC-cCCcccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence            776 445566666666666666553 22232 2344444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=3.3e-18  Score=176.77  Aligned_cols=246  Identities=21%  Similarity=0.291  Sum_probs=128.8

Q ss_pred             HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      +.....+++|++++| .+..++. +.++++|++|++++|. +..++.+..+++|++|++++|.+..+|. ++.+++|++|
T Consensus        86 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  161 (466)
T 1o6v_A           86 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQL  161 (466)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE
T ss_pred             hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEe
Confidence            334467888888875 4445555 7778888888888864 5556667788888888888887776653 5555555555


Q ss_pred             ec---------------------cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc
Q 038130          307 YL---------------------SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE  365 (526)
Q Consensus       307 ~L---------------------~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~  365 (526)
                      ++                     ++|.+ ..++ .+..+++|++|++++|......|  ++.+++|+ .|++++|.+ ..
T Consensus       162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~l~~n~l-~~  235 (466)
T 1o6v_A          162 SFGNQVTDLKPLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLD-ELSLNGNQL-KD  235 (466)
T ss_dssp             EEEESCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC-EEECCSSCC-CC
T ss_pred             ecCCcccCchhhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCC-EEECCCCCc-cc
Confidence            44                     44432 1222 13444444444444433222211  33444444 444444444 22


Q ss_pred             cChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCccccc
Q 038130          366 VPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIP  435 (526)
Q Consensus       366 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp  435 (526)
                      ++ .+..+ ++|+.|+++.|    .....   .+  +..+ ++|+.|++++|.++++|..          +++|.++.++
T Consensus       236 ~~-~l~~l-~~L~~L~l~~n----~l~~~---~~--~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          236 IG-TLASL-TNLTDLDLANN----QISNL---AP--LSGL-TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             CG-GGGGC-TTCSEEECCSS----CCCCC---GG--GTTC-TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG
T ss_pred             ch-hhhcC-CCCCEEECCCC----ccccc---hh--hhcC-CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch
Confidence            22 22222 45555555222    11110   00  2222 2666666666665554322          4555555555


Q ss_pred             HHHhccCCCCEecccCCccCCcCC-Ccccccccccccccc--ccccCCCCCCCCEEeccCCCC
Q 038130          436 ESIIQLSRLVVLNLNYCERLQSLP-KLPFNLQGIFAHHCT--ALSSISYKSSTQLFDLSDNFK  495 (526)
Q Consensus       436 ~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~l~~c~--~L~~l~~~~~L~~L~l~~c~~  495 (526)
                      . +..+++|+.|++++|...+..| ..+++|+.|++++|.  .+..+..+++|+.|++++|+.
T Consensus       304 ~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          304 P-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             G-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             h-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence            3 5566666666666664322222 124566666666652  112233566667777766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=5.6e-18  Score=179.47  Aligned_cols=227  Identities=24%  Similarity=0.292  Sum_probs=182.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..++.|++++ +.+..+|..+.  ++|++|++++|. ++.+|.  .+++|++|+|++|.++.+|.   .+++|++|++++
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred             CCCcEEEecC-CCcCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence            3578999998 45678888665  899999999975 667777  67899999999999999997   779999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |. +..+|.   .+++|++|++++|. +..+|..+   ++|+ .|++++|.+ ..+|..    +++|+.|++..|    .
T Consensus       111 N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l---~~L~-~L~Ls~N~l-~~l~~~----~~~L~~L~L~~N----~  172 (622)
T 3g06_A          111 NP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLP---PGLQ-ELSVSDNQL-ASLPAL----PSELCKLWAYNN----Q  172 (622)
T ss_dssp             CC-CCCCCC---CCTTCCEEECCSSC-CSCCCCCC---TTCC-EEECCSSCC-SCCCCC----CTTCCEEECCSS----C
T ss_pred             Cc-CCCCCC---CCCCcCEEECCCCC-CCcCCCCC---CCCC-EEECcCCcC-CCcCCc----cCCCCEEECCCC----C
Confidence            87 455776   57899999999964 66687754   6788 999999999 667653    388999999543    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcc
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP  462 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~  462 (526)
                      .....        ..+++|+.|++++|.++++|..        +++|.++.+|.   .+++|+.|++++| .+..+|..+
T Consensus       173 l~~l~--------~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp~~l  240 (622)
T 3g06_A          173 LTSLP--------MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPVLP  240 (622)
T ss_dssp             CSCCC--------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred             CCCCc--------ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCCCCC
Confidence            21111        2235999999999999998765        78889988884   4689999999998 677799888


Q ss_pred             ccccccccccccccccCC-CCCCCCEEeccCCCCCCH
Q 038130          463 FNLQGIFAHHCTALSSIS-YKSSTQLFDLSDNFKLDR  498 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c~~l~~  498 (526)
                      ++|+.|+++++ .++.++ .+++|+.|++++| +++.
T Consensus       241 ~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~  275 (622)
T 3g06_A          241 SELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTR  275 (622)
T ss_dssp             TTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCS
T ss_pred             CcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCc
Confidence            99999999987 555665 5789999999999 4443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=190.59  Aligned_cols=85  Identities=22%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC---CCCCCcccEEEecccCCccc--CccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE---FSSSGKIEEIWLDGTAIEEL--PSSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~---~~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~  305 (526)
                      .++++|++++|......|..+.++++|++|++++|.....+|.   +..+++|++|++++|.+..+  +..++++++|++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            4566777776554444566666677777777776654433332   66667777777777766644  235667777777


Q ss_pred             EeccCCccCc
Q 038130          306 LYLSDCKRLK  315 (526)
Q Consensus       306 L~L~~~~~~~  315 (526)
                      |++++|.+.+
T Consensus       153 L~Ls~N~i~~  162 (844)
T 3j0a_A          153 IDFSSNQIFL  162 (844)
T ss_dssp             EEEESSCCCC
T ss_pred             EECCCCcCCe
Confidence            7776665433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=6.1e-18  Score=183.26  Aligned_cols=256  Identities=22%  Similarity=0.199  Sum_probs=137.9

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-CCcCCC--CCC--CCcccEEEecccCCccc-CccccCCCCC
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK-LKRLPE--FSS--SGKIEEIWLDGTAIEEL-PSSIGCLSRL  303 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~--~~~--l~~L~~L~L~~~~i~~l-p~~i~~L~~L  303 (526)
                      ..+++.|++++|......+..+..+++|++|++++|.. ...++.  +..  ...|+.|++++|.+..+ |..++.+++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            35677777777655555555667777777777776542 122221  111  13455555555555533 3455666666


Q ss_pred             CEEeccCCccCcccC-cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccc--cccChhhhcccCCcceE
Q 038130          304 LYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAK--REVPSSIVGSNNNLYEL  380 (526)
Q Consensus       304 ~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~--~~~~~~l~~~~~~L~~L  380 (526)
                      ++|++++|.+.+.+| ..+..+++|++|++++|......+..+..+++|+ .|++++|.+.  +.+|..+..+ ++|+.|
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~p~~~~~l-~~L~~L  485 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ-RLMLRRVALKNVDSSPSPFQPL-RNLTIL  485 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC-EEECTTSCCBCTTCSSCTTTTC-TTCCEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc-cchhccccccccccCCcccccC-CCCCEE
Confidence            666666665444444 3455566666666665543333344444555555 5555554432  2334444333 555555


Q ss_pred             EcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCC----------------c----cCCCCcccccH-HHh
Q 038130          381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPD----------------S----LEKNNFERIPE-SII  439 (526)
Q Consensus       381 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~----------------~----l~~~~l~~lp~-~l~  439 (526)
                      +++.|    ...   ...+..+.++. +|+.|++++|.+++++.                .    +++|.++.+|. .+.
T Consensus       486 ~Ls~N----~l~---~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          486 DLSNN----NIA---NINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             ECCSS----CCC---CCCTTTTTTCT-TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ECCCC----CCC---cCChhhhcccc-ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            55222    110   00001111222 45555555554443210                0    34445555554 477


Q ss_pred             ccCCCCEecccCCccCCcCCCc----cccccccccccccccccCC------CCCCCCEEeccCCCCCC
Q 038130          440 QLSRLVVLNLNYCERLQSLPKL----PFNLQGIFAHHCTALSSIS------YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       440 ~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l~------~~~~L~~L~l~~c~~l~  497 (526)
                      ++++|+.|++++| .+..+|..    +++|+.|+++++ .++.++      .+++|+.|++++||-..
T Consensus       558 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence            8888999999887 55566642    468888888887 344443      36888999998876443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=183.53  Aligned_cols=132  Identities=21%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY  307 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~  307 (526)
                      ..++++|++++|......+..+.++++|++|++++|......| .+.++.+|++|++++|.++.+|. .++++++|++|+
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            4678888888865444445667888889999998876433333 37888888888888888887765 588888888888


Q ss_pred             ccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccc----cceeecccccc
Q 038130          308 LSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS----NSTLYAKGTAA  362 (526)
Q Consensus       308 L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L----~~~L~l~~~~~  362 (526)
                      +++|.+.. .+|..++++++|++|++++|......|..++.+++|    + .+++++|.+
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~-~L~l~~n~l  189 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPM  189 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC-EEECTTCCC
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh-hcccCCCCc
Confidence            88887554 468888888888888888876554445556666655    4 566666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=1.4e-19  Score=176.71  Aligned_cols=218  Identities=18%  Similarity=0.242  Sum_probs=144.8

Q ss_pred             ceEEEeccCCC-CCCCChhcc-------ccCCCcEEeeCCCCCCCcCCC-C--CCCCcccEEEecccCCcccCccccCC-
Q 038130          233 LVILNLSEYVS-LNSLPAEIL-------HLEFLKKLNLLGCSKLKRLPE-F--SSSGKIEEIWLDGTAIEELPSSIGCL-  300 (526)
Q Consensus       233 l~~L~l~~~~~-~~~lp~~~~-------~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~L~~~~i~~lp~~i~~L-  300 (526)
                      ++.|++++|.. ...+|..+.       ++++|++|++++|.....+|. +  ..+++|++|++++|.++.+|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            45556665433 124555444       688888999888775556664 3  78888889999988888778777776 


Q ss_pred             ----CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCc--CCCcc--cCcccccceeecccccccc--ccChhh
Q 038130          301 ----SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQR--LPDDF--GNLEASNSTLYAKGTAAKR--EVPSSI  370 (526)
Q Consensus       301 ----~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~--~~l~~L~~~L~l~~~~~~~--~~~~~l  370 (526)
                          ++|++|++++|.+.+..|..++.+++|++|++++|...+.  +|..+  +++++|+ .|++++|.+.+  .++..+
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-EEECTTSCCCCHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-EEECCCCcCcchHHHHHHH
Confidence                8889999988886666667888888899999988765543  23333  7788888 88888888831  344444


Q ss_pred             hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEeccc
Q 038130          371 VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLN  450 (526)
Q Consensus       371 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~  450 (526)
                      +..+++|+.|+++.|    ..   .+..+.+.....++|+.|++++|.++.+|            .++.  ++|+.|+++
T Consensus       224 ~~~l~~L~~L~Ls~N----~l---~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip------------~~~~--~~L~~L~Ls  282 (312)
T 1wwl_A          224 AAARVQLQGLDLSHN----SL---RDAAGAPSCDWPSQLNSLNLSFTGLKQVP------------KGLP--AKLSVLDLS  282 (312)
T ss_dssp             HHTTCCCSEEECTTS----CC---CSSCCCSCCCCCTTCCEEECTTSCCSSCC------------SSCC--SEEEEEECC
T ss_pred             HhcCCCCCEEECCCC----cC---CcccchhhhhhcCCCCEEECCCCccChhh------------hhcc--CCceEEECC
Confidence            444488889988544    21   11111111122348889998888766554            2222  677777777


Q ss_pred             CCccCCcCCC--ccccccccccccc
Q 038130          451 YCERLQSLPK--LPFNLQGIFAHHC  473 (526)
Q Consensus       451 ~~~~l~~lp~--~~~~L~~L~l~~c  473 (526)
                      +| .+..+|.  .+++|+.|+++++
T Consensus       283 ~N-~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          283 YN-RLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             SS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred             CC-CCCCChhHhhCCCCCEEeccCC
Confidence            77 4444454  2456777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.1e-17  Score=159.85  Aligned_cols=198  Identities=23%  Similarity=0.264  Sum_probs=148.0

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL  308 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L  308 (526)
                      ..+.+++++ ..+..+|..+.  +.|+.|++++|. +..++  .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccC-CCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            456888887 56677887553  689999999976 45555  388899999999999999988876 488999999999


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG  388 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  388 (526)
                      ++|.+....+..+..+++|++|++++|......|..++++++|+ .|++++|.+ ..+|...+..+++|+.|+++.|   
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n---  167 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT-YLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN---  167 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS---
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC-EEECCCCcC-CccCHhHccCCcccceeEecCC---
Confidence            99885554445568899999999999766555556688999999 999999998 6677664444499999999443   


Q ss_pred             CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCcc
Q 038130          389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~  454 (526)
                       .....   ....+..+. +|+.|++++|.++++|           +..+..+++|+.|++++|+.
T Consensus       168 -~l~~~---~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          168 -QLKRV---PEGAFDKLT-ELKTLKLDNNQLKRVP-----------EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             -CCSCC---CTTTTTTCT-TCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCB
T ss_pred             -cCcEe---ChhHhccCC-CcCEEECCCCcCCcCC-----------HHHhccccCCCEEEecCCCe
Confidence             21111   111133343 8999999998776654           33466788999999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=1.8e-17  Score=170.03  Aligned_cols=235  Identities=23%  Similarity=0.298  Sum_probs=130.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      .++++|++++| .+..+|..   .++|++|++++|. +..+|.+..+.+|++|++++|.++.+|..+   .+|++|++++
T Consensus       111 ~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~  182 (454)
T 1jl5_A          111 QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN  182 (454)
T ss_dssp             TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS
T ss_pred             CCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC
Confidence            34555555553 23333321   1466677776654 344666666777777777777766666543   3677777777


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+. .+| .++.+++|++|++++|. +..+|...   .+|+ .|++++|.+ ..+|. +..+ ++|+.|+++.|    .
T Consensus       183 n~l~-~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~-~L~l~~n~l-~~lp~-~~~l-~~L~~L~l~~N----~  248 (454)
T 1jl5_A          183 NQLE-ELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE-SIVAGNNIL-EELPE-LQNL-PFLTTIYADNN----L  248 (454)
T ss_dssp             SCCS-SCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC-EEECCSSCC-SSCCC-CTTC-TTCCEEECCSS----C
T ss_pred             CcCC-cCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc-EEECcCCcC-Ccccc-cCCC-CCCCEEECCCC----c
Confidence            6533 355 46777777777777754 33355433   3555 777777777 46663 5444 77888887443    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHH----------------hcc-CCCC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESI----------------IQL-SRLV  445 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l----------------~~l-~~L~  445 (526)
                      .... +       ..+++|+.|++++|.++++|..        +++|.++.+|...                ..+ ++|+
T Consensus       249 l~~l-~-------~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~  320 (454)
T 1jl5_A          249 LKTL-P-------DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE  320 (454)
T ss_dssp             CSSC-C-------SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred             CCcc-c-------ccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence            1110 0       1113666666666666655443        4455555443110                012 3555


Q ss_pred             EecccCCccCCcCCCccccccccccccccccccCC-CCCCCCEEeccCCCCCC
Q 038130          446 VLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSIS-YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       446 ~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c~~l~  497 (526)
                      .|++++| .+..+|..+++|+.|++++| .++.++ .+++|++|++++|+-..
T Consensus       321 ~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          321 ELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             EEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             EEECCCC-ccccccccCCcCCEEECCCC-ccccccchhhhccEEECCCCCCCc
Confidence            5555554 55555555566666666655 344454 35677777777775544

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.77  E-value=2.5e-22  Score=211.25  Aligned_cols=157  Identities=8%  Similarity=0.038  Sum_probs=114.9

Q ss_pred             cccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHH-h---
Q 038130           20 FKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECR-T---   95 (526)
Q Consensus        20 ~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~-~---   95 (526)
                      ++.+|+|++|..++|.     ..   .++++   ++++++|+++|+|+|||++++|+.++.+ .+ +|.+.+... .   
T Consensus       293 L~~~ea~~Lf~~~a~~-----~~---~~~~~---~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~~  359 (549)
T 2a5y_B          293 LEIDECYDFLEAYGMP-----MP---VGEKE---EDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESRG  359 (549)
T ss_dssp             CCHHHHHHHHHHTSCC-----CC-----CHH---HHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcC-----CC---CchhH---HHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhccc
Confidence            5678899999998654     11   01244   8899999999999999999888888766 32 343444433 1   


Q ss_pred             -hCCCeEEEEEeeccchhhhhcccc-----------HHHHHHHHHhhchhhhhcCCceEEeehhh--ccccchH--HHHH
Q 038130           96 -NYGQIVVAVCYRVEPSHVRKQIGS-----------FEDSFSKLEERFPDKMQTGKKHICLDVAY--FLKEERS--DMVL  159 (526)
Q Consensus        96 -~~~~~il~~sY~~Lp~~lk~~cf~-----------y~~~Fp~d~~i~~~~~~~~~~Li~lwiAe--gf~~~~~--~~~~  159 (526)
                       .....++.+||++||.++| +||.           ||++||+|+.|      +    |.+|+|+  ||+....  ...+
T Consensus       360 ~~~i~~~l~~Sy~~L~~~lk-~~f~~Ls~~er~l~~~ls~fp~~~~i------~----i~~w~a~~~G~i~~~~~~~~~~  428 (549)
T 2a5y_B          360 LVGVECITPYSYKSLAMALQ-RCVEVLSDEDRSALAFAVVMPPGVDI------P----VKLWSCVIPVDICSNEEEQLDD  428 (549)
T ss_dssp             SSTTCCCSSSSSSSHHHHHH-HHHHTSCHHHHHHTTGGGSSCTTCCE------E----HHHHHHHSCC-------CCCTH
T ss_pred             HHHHHHHHhcccccccHHHH-HHHhccchhhhhHhhheeeeCCCCee------e----eeeeeeeccceeccCCCCCCHH
Confidence             1223366669999999999 8999           99999999999      4    8999999  9986543  2233


Q ss_pred             HHHhhCCCCcccchHHHhhccceeeecC---CeEEechhHHHHHHHHHHhhc
Q 038130          160 SFLDACGFFAGIGLPVLVNRCLITVSHS---NTITMHDSLGDMEREIVQKES  208 (526)
Q Consensus       160 ~~~~~~~~~~~~~~~~Li~~sl~~~~~~---~~~~mhdl~~dla~~i~~~e~  208 (526)
                      ++++ +       +++|+++||++....   ..|+|||+||++|++++.+++
T Consensus       429 ~~~~-~-------l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          429 EVAD-R-------LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHHH-H-------HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HHHH-H-------HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            4443 4       999999999997643   479999999999998887664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=9.2e-18  Score=160.49  Aligned_cols=147  Identities=19%  Similarity=0.229  Sum_probs=80.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~  309 (526)
                      ..++.|+++++ .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+|.. ++.+++|++|+++
T Consensus        41 ~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           41 NSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            45566666653 3334443 5556666666666654 33445556666666666666666655443 4566666666666


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      +|.+.+..|..+..+++|++|++++|......+..++++++|+ .|++++|.+ ..++......+++|+.|++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT-ELDLSYNQL-QSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC-EEECCCCCc-CccCHHHhcCCccCCEEEC
Confidence            6654443334455666666666666543333333355666666 666666666 3344333222255666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=2.5e-17  Score=176.70  Aligned_cols=131  Identities=23%  Similarity=0.269  Sum_probs=108.0

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL  306 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L  306 (526)
                      .++++|++++|. +..+| ..|.++++|++|+|++|. +..+| . |.++++|++|+|++|.++.+|. .|++|++|++|
T Consensus        52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            468999999964 55555 578999999999999986 55554 3 8899999999999999998886 48999999999


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeecccccccc
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKR  364 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~  364 (526)
                      ++++|.+.+..+..++++++|++|++++|.... .+|..++.++.|+ .|++++|.+.+
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~  187 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQS  187 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCE
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh-hhcccCccccc
Confidence            999998655444568999999999999976543 4677888999999 99999987743

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=1.3e-17  Score=159.72  Aligned_cols=204  Identities=19%  Similarity=0.142  Sum_probs=137.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~  307 (526)
                      .++++|++++|......+..+.++++|++|++++|. +..++  .+..+++|++|++++|.++.++ ..+.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            467888888854433333467788888888888875 44443  3778888888888888888665 5688888888888


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcc----eEEc
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLY----ELSL  382 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~----~L~l  382 (526)
                      +++|.+....+..+..+++|++|++++|.... .+|..++++++|+ .|++++|.+.+..+..+..+ ++|+    .|++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~l  184 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDL  184 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCEECGGGGHHH-HTCTTCCEEEEC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCCCCcCCHHHhhhh-hhccccceeeec
Confidence            88887555445467888888888888866544 3677888888888 88888888843333444443 6666    6777


Q ss_pred             ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130          383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS  457 (526)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~  457 (526)
                      +.|    ....    ......... +|+.|++++|.++++|           +..+..+++|+.|++++|+....
T Consensus       185 s~n----~l~~----~~~~~~~~~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          185 SLN----PMNF----IQPGAFKEI-RLKELALDTNQLKSVP-----------DGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CSS----CCCE----ECTTSSCSC-CEEEEECCSSCCSCCC-----------TTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCC----cccc----cCccccCCC-cccEEECCCCceeecC-----------HhHhcccccccEEEccCCccccc
Confidence            443    1111    111111222 7888888888766544           23456788888898888864433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.3e-17  Score=159.51  Aligned_cols=198  Identities=18%  Similarity=0.155  Sum_probs=154.1

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      ...+++|+.|++++|. +..++.+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..|..+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            5668999999999965 677888999999999999999999875 78999999999999998666555667899999999


Q ss_pred             eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130          331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT  410 (526)
Q Consensus       331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  410 (526)
                      ++++|......+..++++++|+ .|++++|.+ ..++...+..+++|+.|+++.|    ...   ......+..+ ++|+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n----~l~---~~~~~~~~~l-~~L~  184 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLT-YLNLAHNQL-QSLPKGVFDKLTNLTELDLSYN----QLQ---SLPEGVFDKL-TQLK  184 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCC---CCCTTTTTTC-TTCC
T ss_pred             ECCCCcCCccCHHHhccCCCCC-EEECCCCcc-CccCHHHhccCccCCEEECCCC----CcC---ccCHHHhcCC-ccCC
Confidence            9999876655555689999999 999999999 5666655444499999999544    221   1111112344 4999


Q ss_pred             EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccc
Q 038130          411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTA  475 (526)
Q Consensus       411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~  475 (526)
                      .|++++|.++++|           |..+..+++|+.|++++|+.....|    +|+.|+++.+.-
T Consensus       185 ~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~  234 (272)
T 3rfs_A          185 DLRLYQNQLKSVP-----------DGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKH  234 (272)
T ss_dssp             EEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHT
T ss_pred             EEECCCCcCCccC-----------HHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhC
Confidence            9999999877654           4457789999999999997665544    667776665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=7.2e-20  Score=178.87  Aligned_cols=240  Identities=19%  Similarity=0.165  Sum_probs=175.4

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCC-CcCCC-CC-------CCCcccEEEecccCCc-ccCccc--c
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKL-KRLPE-FS-------SSGKIEEIWLDGTAIE-ELPSSI--G  298 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~-~~-------~l~~L~~L~L~~~~i~-~lp~~i--~  298 (526)
                      ..++.|++++|..  .+|..+...  |++|++++|... ..+|. +.       .+.+|++|++++|.++ .+|..+  +
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3467777777655  778766654  889999886542 23443 32       6889999999999998 788876  8


Q ss_pred             CCCCCCEEeccCCccCcccCcCCCCC-----CCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc--cChhh-
Q 038130          299 CLSRLLYLYLSDCKRLKSLPSSLSQL-----KSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE--VPSSI-  370 (526)
Q Consensus       299 ~L~~L~~L~L~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~--~~~~l-  370 (526)
                      .+++|++|++++|.+.+. |..+..+     ++|++|++++|...+..|..++++++|+ .|++++|.+.+.  ++..+ 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS-TLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC-EEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC-EEECCCCCcCcchHHHHHHH
Confidence            999999999999986554 7777766     8999999999877666668899999999 999999987554  33344 


Q ss_pred             -hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEec
Q 038130          371 -VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLN  448 (526)
Q Consensus       371 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~  448 (526)
                       ..+ ++|++|+++.|    ... ..+.....+....++|+.|++++|.+++.+           | ..+..+++|+.|+
T Consensus       197 ~~~l-~~L~~L~L~~N----~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          197 PLKF-PTLQVLALRNA----GME-TPSGVCSALAAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLN  259 (312)
T ss_dssp             TTSC-TTCCEEECTTS----CCC-CHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEE
T ss_pred             hccC-CCCCEEECCCC----cCc-chHHHHHHHHhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEE
Confidence             444 99999999544    211 000111111112249999999999877632           1 2344578999999


Q ss_pred             ccCCccCCcCCCc-ccccccccccccccccc---CCCCCCCCEEeccCCCC
Q 038130          449 LNYCERLQSLPKL-PFNLQGIFAHHCTALSS---ISYKSSTQLFDLSDNFK  495 (526)
Q Consensus       449 L~~~~~l~~lp~~-~~~L~~L~l~~c~~L~~---l~~~~~L~~L~l~~c~~  495 (526)
                      +++|. ++.+|.. +++|+.|+++++. ++.   +..+++|++|++++|+-
T Consensus       260 Ls~N~-l~~ip~~~~~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          260 LSFTG-LKQVPKGLPAKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CTTSC-CSSCCSSCCSEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCTT
T ss_pred             CCCCc-cChhhhhccCCceEEECCCCC-CCCChhHhhCCCCCEEeccCCCC
Confidence            99994 5688864 4699999999863 333   44689999999999964

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.7e-17  Score=159.99  Aligned_cols=196  Identities=22%  Similarity=0.236  Sum_probs=142.2

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ..++.+++++ +.+..+|..+.  +.+++|++++|......+ .+..+.+|++|++++|.++.+|.. +.+++|++|+++
T Consensus        10 ~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G           10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             CCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            4677888887 56677776553  688899998876433333 378888899999999988887764 788899999999


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|. +..+|..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..+|...+..+++|+.|+++.|    
T Consensus        86 ~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N----  158 (290)
T 1p9a_G           86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ-ELYLKGNEL-KTLPPGLLTPTPKLEKLSLANN----  158 (290)
T ss_dssp             SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-EEECTTSCC-CCCCTTTTTTCTTCCEEECTTS----
T ss_pred             CCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC-EEECCCCCC-CccChhhcccccCCCEEECCCC----
Confidence            886 457888888889999999988655444446688888888 999999988 5666665554488999998544    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE  453 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~  453 (526)
                      .....   ....+..+. +|+.|++++|.++            .+|.++..+++|+.|++++|+
T Consensus       159 ~l~~l---~~~~~~~l~-~L~~L~L~~N~l~------------~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          159 NLTEL---PAGLLNGLE-NLDTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCSCC---CTTTTTTCT-TCCEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCCcc---CHHHhcCcC-CCCEEECCCCcCC------------ccChhhcccccCCeEEeCCCC
Confidence            21111   111122333 8899998888654            445566667788888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=2.5e-17  Score=157.83  Aligned_cols=216  Identities=21%  Similarity=0.139  Sum_probs=145.2

Q ss_pred             CCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCc
Q 038130          242 VSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPS  319 (526)
Q Consensus       242 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~  319 (526)
                      ..+..+|..+.  ++|++|++++|......+ .+..+++|++|++++|.++.++. .++++++|++|++++|.+....|.
T Consensus        17 ~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            44566776553  579999999976433333 48888999999999999987765 688899999999999887666667


Q ss_pred             CCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEcccCCCCCCCCCCCCCc
Q 038130          320 SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI  398 (526)
Q Consensus       320 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~  398 (526)
                      .+..+++|++|++++|......+..++++++|+ .|++++|.+.+ .+|..+..+ ++|+.|+++.|    .....   .
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N----~l~~~---~  165 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSN----KIQSI---Y  165 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGC-TTCCEEECCSS----CCCEE---C
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCC-EEECcCCccceecCchhhccC-CCCCEEECCCC----CCCcC---C
Confidence            788999999999998765554455688888999 99999998843 257777666 88888888443    21111   1


Q ss_pred             ccCcccccCccc----EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccccccc
Q 038130          399 TLPLDGLHTTLT----SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCT  474 (526)
Q Consensus       399 ~~~~~~~~~~L~----~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~  474 (526)
                      ...+..+. +|+    .|++++|.+++            +|.......+|+.|++++|. ++.+|.              
T Consensus       166 ~~~~~~l~-~L~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~-l~~~~~--------------  217 (276)
T 2z62_A          166 CTDLRVLH-QMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQ-LKSVPD--------------  217 (276)
T ss_dssp             GGGGHHHH-TCTTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCSSC-CSCCCT--------------
T ss_pred             HHHhhhhh-hccccceeeecCCCcccc------------cCccccCCCcccEEECCCCc-eeecCH--------------
Confidence            11121222 444    67777765544            33333334477777887773 444432              


Q ss_pred             ccccCCCCCCCCEEeccCCCCCCH
Q 038130          475 ALSSISYKSSTQLFDLSDNFKLDR  498 (526)
Q Consensus       475 ~L~~l~~~~~L~~L~l~~c~~l~~  498 (526)
                        ..+..+++|+.|++++||--..
T Consensus       218 --~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          218 --GIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             --TTTTTCCSCCEEECCSSCBCCC
T ss_pred             --hHhcccccccEEEccCCccccc
Confidence              1123467788888887764433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=3.8e-18  Score=166.14  Aligned_cols=202  Identities=21%  Similarity=0.253  Sum_probs=156.8

Q ss_pred             cCcceEEEeccCCCCCCC---ChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc--cccCCCCC
Q 038130          230 VNTLVILNLSEYVSLNSL---PAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS--SIGCLSRL  303 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L  303 (526)
                      ..++++|++++|. +..+   +..+..+++|++|++++|. +..+|. +..+++|++|++++|.++.++.  .+..+++|
T Consensus        51 l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           51 LTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             CTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred             cccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence            4678999999864 3333   5667779999999999976 445554 8889999999999999998774  78999999


Q ss_pred             CEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          304 LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       304 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      ++|++++|.+.+..|..+..+++|++|++++|...+ .+|..+..+++|+ .|++++|.+.+..|..+..+ ++|+.|++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L  206 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSL-SSLQVLNM  206 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTSCCCEECTTTTTTC-TTCCEEEC
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCCCcCCcCHHHhcCC-CCCCEEEC
Confidence            999999998777778888999999999999976554 4788899999999 99999999955446666666 99999999


Q ss_pred             ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCCEecccCCcc
Q 038130          383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCER  454 (526)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~  454 (526)
                      +.|    .....   ....+..+. +|+.|++++|.+++.+           |..+..+ ++|+.|++++|+.
T Consensus       207 ~~N----~l~~~---~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          207 SHN----NFFSL---DTFPYKCLN-SLQVLDYSLNHIMTSK-----------KQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TTS----CCSBC---CSGGGTTCT-TCCEEECTTSCCCBCS-----------SSSCCCCCTTCCEEECTTCCE
T ss_pred             CCC----ccCcc---ChhhccCcc-cCCEeECCCCCCcccC-----------HHHHHhhhccCCEEEccCCCe
Confidence            544    22111   111233444 9999999999877632           4455566 4899999999964

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.6e-16  Score=151.59  Aligned_cols=199  Identities=23%  Similarity=0.295  Sum_probs=145.2

Q ss_pred             CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEe
Q 038130          255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLN  331 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~  331 (526)
                      ...++++++++ .++.+|. +.  .+++.|++++|.++.+|. .++++++|++|++++|.+. .+|.. +..+++|++|+
T Consensus        16 ~~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            35789999985 4667775 43  678999999999998875 6899999999999998755 45544 57899999999


Q ss_pred             ecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccE
Q 038130          332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS  411 (526)
Q Consensus       332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  411 (526)
                      +++|......+..+.++++|+ .|++++|.+ ..++...+..+++|+.|+++.|    .....   ....+..+ ++|+.
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n----~l~~~---~~~~~~~l-~~L~~  161 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLA-ELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN----ELQSL---PKGVFDKL-TSLKE  161 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCCCC---CTTTTTTC-TTCCE
T ss_pred             CCCCcCCcCCHhHcccccCCC-EEECCCCcc-CeeCHHHhCcCcCCCEEECCCC----cCCcc---CHhHccCC-cccce
Confidence            999765544445678899999 999999999 5555554444499999999544    21111   11113334 49999


Q ss_pred             EEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEEecc
Q 038130          412 LYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLS  491 (526)
Q Consensus       412 L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~  491 (526)
                      |++++|.++++|           +..+..+++|+.|++++| .+..+|.                ..+..+++|+.|+++
T Consensus       162 L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~----------------~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          162 LRLYNNQLKRVP-----------EGAFDKLTELKTLKLDNN-QLKRVPE----------------GAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             EECCSSCCSCCC-----------TTTTTTCTTCCEEECCSS-CCSCCCT----------------TTTTTCTTCCEEECC
T ss_pred             eEecCCcCcEeC-----------hhHhccCCCcCEEECCCC-cCCcCCH----------------HHhccccCCCEEEec
Confidence            999998776654           345678899999999998 4444442                123346788899999


Q ss_pred             CCCC
Q 038130          492 DNFK  495 (526)
Q Consensus       492 ~c~~  495 (526)
                      +||-
T Consensus       214 ~N~~  217 (270)
T 2o6q_A          214 ENPW  217 (270)
T ss_dssp             SSCB
T ss_pred             CCCe
Confidence            8873

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.1e-18  Score=170.29  Aligned_cols=215  Identities=16%  Similarity=0.113  Sum_probs=161.0

Q ss_pred             hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc--cccCCCCCC
Q 038130          229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS--SIGCLSRLL  304 (526)
Q Consensus       229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~  304 (526)
                      ...++++|++++|......|..+.++++|++|++++|. +..+|.  +..+++|++|++++|.++.+|.  .++.+++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            34689999999975544456678999999999999975 556664  7899999999999999999987  789999999


Q ss_pred             EEeccCCccCccc-CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130          305 YLYLSDCKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       305 ~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      +|++++|...+.+ |..+..+++|++|++++|......|..++++++|+ .|++++|.+ ..+|..+...+++|+.|+++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-HLILHMKQH-ILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-EEEEECSCS-TTHHHHHHHHTTTEEEEEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC-eecCCCCcc-ccchhhhhhhcccccEEECC
Confidence            9999998544444 56789999999999999887777788999999999 999999998 77887776656999999996


Q ss_pred             cCCCCCCCCCCCCCc------------------------ccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHH-H
Q 038130          384 RSWGGDKQMGLSSPI------------------------TLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPES-I  438 (526)
Q Consensus       384 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~-l  438 (526)
                      .|.............                        +..+..+ ++|+.|++++|.            ++.+|.+ +
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~------------l~~i~~~~~  297 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQ------------LKSVPDGIF  297 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSC------------CCCCCTTTT
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc-cCCCEEECCCCC------------CCccCHHHH
Confidence            552211100000000                        0001112 256666666654            5556655 4


Q ss_pred             hccCCCCEecccCCccCCcCC
Q 038130          439 IQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       439 ~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      ..+++|+.|++++|+.....|
T Consensus       298 ~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          298 DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCCCCEEEeeCCCccCcCC
Confidence            789999999999997555433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=1.6e-16  Score=153.08  Aligned_cols=209  Identities=21%  Similarity=0.134  Sum_probs=155.2

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcCCCCCCCCc
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLK  328 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~  328 (526)
                      +.+++++++++++++ .++.+|. +.  .++++|++++|.++.+ |..+..+++|++|++++|.+ ..+|.. +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCC
T ss_pred             ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCC
Confidence            567899999999985 4667775 43  6889999999999966 46799999999999999874 445553 7899999


Q ss_pred             EEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130          329 LLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT  408 (526)
Q Consensus       329 ~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      +|++++| .+..+|..+..+++|+ .|++++|.+ ..++...+..+++|+.|+++.|    .....   ....+..+ ++
T Consensus        81 ~L~Ls~N-~l~~l~~~~~~l~~L~-~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l-~~  149 (290)
T 1p9a_G           81 TLDLSHN-QLQSLPLLGQTLPALT-VLDVSFNRL-TSLPLGALRGLGELQELYLKGN----ELKTL---PPGLLTPT-PK  149 (290)
T ss_dssp             EEECCSS-CCSSCCCCTTTCTTCC-EEECCSSCC-CCCCSSTTTTCTTCCEEECTTS----CCCCC---CTTTTTTC-TT
T ss_pred             EEECCCC-cCCcCchhhccCCCCC-EEECCCCcC-cccCHHHHcCCCCCCEEECCCC----CCCcc---Chhhcccc-cC
Confidence            9999996 5668898899999999 999999999 5666543344499999999544    22111   11112333 49


Q ss_pred             ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEE
Q 038130          409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLF  488 (526)
Q Consensus       409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L  488 (526)
                      |+.|++++|+++++|           +..+..+++|+.|++++| .+..+|..                 +...++|+.|
T Consensus       150 L~~L~L~~N~l~~l~-----------~~~~~~l~~L~~L~L~~N-~l~~ip~~-----------------~~~~~~L~~l  200 (290)
T 1p9a_G          150 LEKLSLANNNLTELP-----------AGLLNGLENLDTLLLQEN-SLYTIPKG-----------------FFGSHLLPFA  200 (290)
T ss_dssp             CCEEECTTSCCSCCC-----------TTTTTTCTTCCEEECCSS-CCCCCCTT-----------------TTTTCCCSEE
T ss_pred             CCEEECCCCcCCccC-----------HHHhcCcCCCCEEECCCC-cCCccChh-----------------hcccccCCeE
Confidence            999999999776654           334577899999999998 45555532                 2234578899


Q ss_pred             eccCCCCCCHHHHHHH
Q 038130          489 DLSDNFKLDRNAVRII  504 (526)
Q Consensus       489 ~l~~c~~l~~~~~~~~  504 (526)
                      ++++||-........+
T Consensus       201 ~L~~Np~~C~c~~~~l  216 (290)
T 1p9a_G          201 FLHGNPWLCNCEILYF  216 (290)
T ss_dssp             ECCSCCBCCSGGGHHH
T ss_pred             EeCCCCccCcCccHHH
Confidence            9999986654433333

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.73  E-value=4.9e-18  Score=149.18  Aligned_cols=124  Identities=40%  Similarity=0.666  Sum_probs=111.5

Q ss_pred             CCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcH
Q 038130            7 LHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCL   84 (526)
Q Consensus         7 ~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~   84 (526)
                      ++....+|||||||+|+|..+.|..+++.+|.++|+.+|.|+ ++++|+.|+..|.+...++-.+ +++...++.+.|+.
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            346788999999999999988999999999999999999997 8999999999999999999999 77789999999999


Q ss_pred             HHHHHHHHHHhh-CCCeEEEEEeeccchhhhhccccHHHHHHHHHhh
Q 038130           85 DELLKIVECRTN-YGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER  130 (526)
Q Consensus        85 ~~w~~i~~~~~~-~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i  130 (526)
                      +|+..|+++... ..+.|+|+.|+.-|+++++|-..|...|-+...-
T Consensus       109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~  155 (204)
T 3ozi_A          109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK  155 (204)
T ss_dssp             HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHh
Confidence            999999999865 4678999999999999999999999999887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=5.2e-17  Score=161.16  Aligned_cols=233  Identities=18%  Similarity=0.153  Sum_probs=139.6

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCc-ccCc-cccCCCCCCE-Eec
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIE-ELPS-SIGCLSRLLY-LYL  308 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L  308 (526)
                      ++++.++ +.++.+|..+  .+++++|+|++|. ++.+|.  |.++++|++|+|++|.+. .+|. .|.++++|+. +.+
T Consensus        12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEES-TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecC-CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            3455554 4566677655  3567777777754 555553  667777777777777764 4543 3566766664 334


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccc-ccccccChh-hhcccCCcceEEcccCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGT-AAKREVPSS-IVGSNNNLYELSLDRSW  386 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~-~~~~~~~~~-l~~~~~~L~~L~l~~~~  386 (526)
                      .+|.+....|..+..+++|++|++++|......+..+.....+. .+++.++ .+ ..++.. +......++.|+++.| 
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i-~~l~~~~f~~~~~~l~~L~L~~N-  164 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINI-HTIERNSFVGLSFESVILWLNKN-  164 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTC-CEECTTSSTTSBSSCEEEECCSS-
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhh-hhhhcccccc-ccccccchhhcchhhhhhccccc-
Confidence            44443333355566777777777776543333333344444555 6666543 44 445443 2333245666776433 


Q ss_pred             CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccH-HHhccCCCCEecccCCccCCcCCC-cccc
Q 038130          387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPE-SIIQLSRLVVLNLNYCERLQSLPK-LPFN  464 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-~~~~  464 (526)
                         ....    ++....... +|+.|++.++           |.++.+|. .+..+++|+.|++++| .+..+|. .+.+
T Consensus       165 ---~i~~----i~~~~f~~~-~L~~l~l~~~-----------n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~  224 (350)
T 4ay9_X          165 ---GIQE----IHNSAFNGT-QLDELNLSDN-----------NNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLEN  224 (350)
T ss_dssp             ---CCCE----ECTTSSTTE-EEEEEECTTC-----------TTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTT
T ss_pred             ---cccC----CChhhcccc-chhHHhhccC-----------CcccCCCHHHhccCcccchhhcCCC-CcCccChhhhcc
Confidence               1100    111111222 6667776543           35556664 5688999999999998 6788886 4778


Q ss_pred             ccccccccccccccCC---CCCCCCEEeccCC
Q 038130          465 LQGIFAHHCTALSSIS---YKSSTQLFDLSDN  493 (526)
Q Consensus       465 L~~L~l~~c~~L~~l~---~~~~L~~L~l~~c  493 (526)
                      |+.|.+.++..++.+|   .+++|+.+++.++
T Consensus       225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             chHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            8888888888887776   5788999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=7e-17  Score=151.22  Aligned_cols=203  Identities=19%  Similarity=0.253  Sum_probs=132.4

Q ss_pred             CCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccC-CcccCc-cccCCCCCCEEeccC-CccCccc
Q 038130          243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA-IEELPS-SIGCLSRLLYLYLSD-CKRLKSL  317 (526)
Q Consensus       243 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~l  317 (526)
                      .+..+|. +  ..+|++|++++|. ++.+|.  +..+++|++|++++|. ++.+|. .++++++|++|++++ |.+....
T Consensus        22 ~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           22 DIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             SCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            3667776 4  3478888888865 445443  7788888888888886 887765 678888889998887 6644433


Q ss_pred             CcCCCCCCCCcEEeecCCCCCCcCCCcccCccccc--ceeecccc-ccccccChhhhcccCCcc-eEEcccCCCCCCCCC
Q 038130          318 PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN--STLYAKGT-AAKREVPSSIVGSNNNLY-ELSLDRSWGGDKQMG  393 (526)
Q Consensus       318 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~--~~L~l~~~-~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~  393 (526)
                      +..+..+++|++|++++|. +..+|. ++.+++|+  ..|++++| .+ ..++...+..+++|+ .|+++.|    ... 
T Consensus        98 ~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n----~l~-  169 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNN----GFT-  169 (239)
T ss_dssp             TTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSC----CCC-
T ss_pred             HHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCC----CCc-
Confidence            4567788888888888865 444665 55555443  17888888 77 666665444448888 8888443    211 


Q ss_pred             CCCCcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhcc-CCCCEecccCCccCCcCCC-cccccccccc
Q 038130          394 LSSPITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCERLQSLPK-LPFNLQGIFA  470 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp~-~~~~L~~L~l  470 (526)
                      .   .+...... ++|+.|++++|. ++.+|           +..+..+ ++|+.|++++| .+..+|. .+++|+.|++
T Consensus       170 ~---i~~~~~~~-~~L~~L~L~~n~~l~~i~-----------~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l  233 (239)
T 2xwt_C          170 S---VQGYAFNG-TKLDAVYLNKNKYLTVID-----------KDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIA  233 (239)
T ss_dssp             E---ECTTTTTT-CEEEEEECTTCTTCCEEC-----------TTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEEC
T ss_pred             c---cCHhhcCC-CCCCEEEcCCCCCcccCC-----------HHHhhccccCCcEEECCCC-ccccCChhHhccCceeec
Confidence            1   11111122 388888888884 54433           3456677 88999999887 4455553 2444444444


Q ss_pred             ccc
Q 038130          471 HHC  473 (526)
Q Consensus       471 ~~c  473 (526)
                      .++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            443

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.71  E-value=9e-18  Score=145.26  Aligned_cols=122  Identities=42%  Similarity=0.715  Sum_probs=99.0

Q ss_pred             CCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHH
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDE   86 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~   86 (526)
                      +...+|||||||+|+|..+.|..+++.+|..+|+.+|.|+ ++++|+.|..+|.+...++..+ ++++..+..+.|+.+|
T Consensus         4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            3568999999999999998999999999999999999997 8999999999999999999999 7778999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEEeeccchhhhhccccHHHHHHHHHhh
Q 038130           87 LLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER  130 (526)
Q Consensus        87 w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i  130 (526)
                      +..|+++.......|+|+.|+.-|+++++|-..|...|-+...-
T Consensus        84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~  127 (176)
T 3jrn_A           84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR  127 (176)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT
T ss_pred             HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc
Confidence            99999999888889999999999999999999999999886554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.6e-16  Score=154.67  Aligned_cols=193  Identities=18%  Similarity=0.257  Sum_probs=148.2

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..++.|++++| .+..++ .+..+++|++|++++|. +..++.+..+++|++|++++|.++.+| .+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            57899999985 556677 48889999999999975 556666889999999999999999876 689999999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+ ..+|. +..+++|++|++++|.. ..++. ++.+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.|    .
T Consensus       117 n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~-~L~l~~n~l-~~~~~-l~~l-~~L~~L~l~~n----~  184 (308)
T 1h6u_A          117 TQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQ-YLSIGNAQV-SDLTP-LANL-SKLTTLKADDN----K  184 (308)
T ss_dssp             SCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCC-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----C
T ss_pred             CCC-CCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCcc-EEEccCCcC-CCChh-hcCC-CCCCEEECCCC----c
Confidence            874 44554 88999999999999754 44544 88889999 999999998 55655 5555 99999999543    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      ....   ..  +..+ ++|+.|++++|.++++            + .+..+++|+.|++++|+ +...|
T Consensus       185 l~~~---~~--l~~l-~~L~~L~L~~N~l~~~------------~-~l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          185 ISDI---SP--LASL-PNLIEVHLKNNQISDV------------S-PLANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             CCCC---GG--GGGC-TTCCEEECTTSCCCBC------------G-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred             cCcC---hh--hcCC-CCCCEEEccCCccCcc------------c-cccCCCCCCEEEccCCe-eecCC
Confidence            2111   11  3344 4999999999876553            3 36789999999999985 34444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=2.9e-18  Score=169.20  Aligned_cols=200  Identities=20%  Similarity=0.192  Sum_probs=136.2

Q ss_pred             cceEEEeccCCCCCCCChhcccc--CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc--cCccccCCCCCCEEe
Q 038130          232 TLVILNLSEYVSLNSLPAEILHL--EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE--LPSSIGCLSRLLYLY  307 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~  307 (526)
                      .++.++++++...   +..+..+  +.++.|++++|......+.+..+++|++|++++|.+..  +|..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            3678888875332   5556666  88888888887655556667778888889988888762  777788888899999


Q ss_pred             ccCCccCcccCcCCCCCCCCcEEeecCCCCCC--cCCCcccCcccccceeecccc-ccccc-cChhhhcccC-CcceEEc
Q 038130          308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ--RLPDDFGNLEASNSTLYAKGT-AAKRE-VPSSIVGSNN-NLYELSL  382 (526)
Q Consensus       308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~~L~l~~~-~~~~~-~~~~l~~~~~-~L~~L~l  382 (526)
                      +++|.+....|..++.+++|++|++++|..++  .+|..+.++++|+ .|++++| .+++. ++..+..+ + +|++|++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l  202 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD-ELNLSWCFDFTEKHVQVAVAHV-SETITQLNL  202 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC-EEECCCCTTCCHHHHHHHHHHS-CTTCCEEEC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC-EEcCCCCCCcChHHHHHHHHhc-ccCCCEEEe
Confidence            98887666777778888888888888874444  3566677788888 8888888 77433 45555555 7 8888888


Q ss_pred             ccCCCCCC-CCCCCCCcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130          383 DRSWGGDK-QMGLSSPITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE  453 (526)
Q Consensus       383 ~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~  453 (526)
                          .+|. .+.... .+..+.. .++|+.|++++|. ++.           ..+..+..+++|+.|++++|.
T Consensus       203 ----~~~~~~~~~~~-l~~~~~~-~~~L~~L~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          203 ----SGYRKNLQKSD-LSTLVRR-CPNLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ----CSCGGGSCHHH-HHHHHHH-CTTCSEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCT
T ss_pred             ----CCCcccCCHHH-HHHHHhh-CCCCCEEeCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCC
Confidence                4432 111000 0111122 3378888888776 322           234466677788888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=1.8e-16  Score=148.39  Aligned_cols=199  Identities=18%  Similarity=0.213  Sum_probs=153.6

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecc-cCCcccCc-cccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDG-TAIEELPS-SIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~  305 (526)
                      ..++.|++++|. +..+| ..+.++++|++|++++|..++.++  .+.++++|++|++++ |.++.+|. .+.++++|++
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            478999999965 45555 478899999999999986566666  378999999999998 99998874 6899999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCc---EEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEE
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLK---LLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELS  381 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~  381 (526)
                      |++++|.+ ..+|. +..+++|+   +|++++|..+..+|. .+.++++|+..|++++|.+ ..+|...+.. ++|+.|+
T Consensus       110 L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          110 LGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTT-CEEEEEE
T ss_pred             EeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCC-CCCCEEE
Confidence            99999875 45887 88889998   999999845666665 5888888865799999999 6888888777 8999999


Q ss_pred             cccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCcc
Q 038130          382 LDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       382 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~  454 (526)
                      ++    ++..+...+  ...+.++.++|+.|++++|.++++|            ..  .+++|+.|+++++..
T Consensus       186 L~----~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l~------------~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          186 LN----KNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTALP------------SK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CT----TCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCCC------------CT--TCTTCSEEECTTC--
T ss_pred             cC----CCCCcccCC--HHHhhccccCCcEEECCCCccccCC------------hh--HhccCceeeccCccC
Confidence            94    442122111  1113344149999999999776654            22  688999999998753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=3.4e-16  Score=152.29  Aligned_cols=190  Identities=20%  Similarity=0.274  Sum_probs=138.3

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      ..++++|++|++++|. +..+|.+..+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence            4458888999998864 6667788888889999999888888877 8888899999999887 44455 47888899999


Q ss_pred             eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130          331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT  410 (526)
Q Consensus       331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  410 (526)
                      ++++|.. ..+|. +..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.    |.....   ..  +..+. +|+
T Consensus       113 ~l~~n~l-~~~~~-l~~l~~L~-~L~l~~n~l-~~~~~-l~~l-~~L~~L~l~~----n~l~~~---~~--l~~l~-~L~  176 (308)
T 1h6u_A          113 DLTSTQI-TDVTP-LAGLSNLQ-VLYLDLNQI-TNISP-LAGL-TNLQYLSIGN----AQVSDL---TP--LANLS-KLT  176 (308)
T ss_dssp             ECTTSCC-CCCGG-GTTCTTCC-EEECCSSCC-CCCGG-GGGC-TTCCEEECCS----SCCCCC---GG--GTTCT-TCC
T ss_pred             ECCCCCC-CCchh-hcCCCCCC-EEECCCCcc-CcCcc-ccCC-CCccEEEccC----CcCCCC---hh--hcCCC-CCC
Confidence            9988654 44543 88888888 899998888 55554 5555 8899999843    321111   11  33343 889


Q ss_pred             EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--cccccccccccccc
Q 038130          411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCT  474 (526)
Q Consensus       411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~  474 (526)
                      .|++++|.++++            + .+..+++|+.|++++|. +..+++  .+++|+.|++++++
T Consensus       177 ~L~l~~n~l~~~------------~-~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          177 TLKADDNKISDI------------S-PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             EEECCSSCCCCC------------G-GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred             EEECCCCccCcC------------h-hhcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence            999888876553            3 26778889999998884 445543  25678888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=9.2e-16  Score=152.15  Aligned_cols=217  Identities=18%  Similarity=0.175  Sum_probs=165.4

Q ss_pred             CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC--CCCCCccc-EEEecccCCcccC-ccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIE-EIWLDGTAIEELP-SSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~-~L~L~~~~i~~lp-~~i~~L~~L~~  305 (526)
                      .+++.|++++| .++.+|. .|.++++|++|+|++|...+.+|.  |.++++++ .+.+++|.+..+| ..++.+++|++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            57899999995 5677775 588999999999999987777774  78888885 5677789999885 56899999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcc-cccceeeccccccccccChhhhcccCCcceEEcc
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~-~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      |++++|.+....+..+....++..|++.++..+..+|. .+..+. .++ .|++++|.+ ..++...+.. .+|++|.+ 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~-~L~L~~N~i-~~i~~~~f~~-~~L~~l~l-  184 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGI-QEIHNSAFNG-TQLDELNL-  184 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE-EEECCSSCC-CEECTTSSTT-EEEEEEEC-
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh-hhccccccc-cCCChhhccc-cchhHHhh-
Confidence            99999885554444556777889999988777777775 456665 466 899999999 7888888877 88999999 


Q ss_pred             cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc--
Q 038130          384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL--  461 (526)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--  461 (526)
                         .++..+...+...  +.++. +|+.|++++|+++.+|            .  ..+.+|+.|.+.++..++.+|.+  
T Consensus       185 ---~~~n~l~~i~~~~--f~~l~-~L~~LdLs~N~l~~lp------------~--~~~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          185 ---SDNNNLEELPNDV--FHGAS-GPVILDISRTRIHSLP------------S--YGLENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             ---TTCTTCCCCCTTT--TTTEE-CCSEEECTTSCCCCCC------------S--SSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred             ---ccCCcccCCCHHH--hccCc-ccchhhcCCCCcCccC------------h--hhhccchHhhhccCCCcCcCCCchh
Confidence               4444333333221  33454 9999999999877655            2  23677888888888888888863  


Q ss_pred             ccccccccccc
Q 038130          462 PFNLQGIFAHH  472 (526)
Q Consensus       462 ~~~L~~L~l~~  472 (526)
                      +++|+.+++.+
T Consensus       245 l~~L~~l~l~~  255 (350)
T 4ay9_X          245 LVALMEASLTY  255 (350)
T ss_dssp             CCSCCEEECSC
T ss_pred             CcChhhCcCCC
Confidence            56777777753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=3.2e-17  Score=160.42  Aligned_cols=242  Identities=14%  Similarity=0.057  Sum_probs=176.3

Q ss_pred             HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      +.....+++|++++|.. ...++ +..+++|++|++++|. +..++   ..++|++|++++|.++.++..  .+++|++|
T Consensus        54 ~~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L  125 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNI  125 (317)
T ss_dssp             HTTCTTCCEEECTTSCC-EEEEE-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEE
T ss_pred             hhCCCcCCEEECCCCcC-Ccchh-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEE
Confidence            34457899999999654 33444 8889999999999975 44443   448899999999999987653  47899999


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcc-cCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF-GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ++++|.+....|..+..+++|++|++++|......|..+ ..+++|+ .|++++|.+ ..++... .+ ++|+.|+++.|
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~-~l-~~L~~L~Ls~N  201 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFI-YDVKGQV-VF-AKLKTLDLSSN  201 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC-EEECTTSCC-CEEECCC-CC-TTCCEEECCSS
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC-EEECCCCcC-ccccccc-cc-ccCCEEECCCC
Confidence            999998777667788899999999999987665555655 4788999 999999999 5555443 34 99999999544


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC-CcCCCc---
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL-QSLPKL---  461 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~---  461 (526)
                          ....    .+..+..+ ++|+.|++++|.++            .+|..+..+++|+.|++++|+.. +.+|..   
T Consensus       202 ----~l~~----l~~~~~~l-~~L~~L~L~~N~l~------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          202 ----KLAF----MGPEFQSA-AGVTWISLRNNKLV------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             ----CCCE----ECGGGGGG-TTCSEEECTTSCCC------------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred             ----cCCc----chhhhccc-CcccEEECcCCccc------------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence                2111    11113344 49999999998654            45666778899999999999765 445442   


Q ss_pred             cccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHH
Q 038130          462 PFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAV  501 (526)
Q Consensus       462 ~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~  501 (526)
                      .++|+.|++.++..++...    ..+.+....-..|..+.....
T Consensus       261 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~~  304 (317)
T 3o53_A          261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA  304 (317)
T ss_dssp             CHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTHH
T ss_pred             cccceEEECCCchhccCCchhccCCCceecccceeeccCChhHH
Confidence            5678888888777666543    233444444555777765443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=2.2e-15  Score=142.08  Aligned_cols=189  Identities=20%  Similarity=0.119  Sum_probs=126.0

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~  309 (526)
                      ..+.+++++ ..+..+|..+.  +.|+.|++++|......+. +..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus        15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            456788877 56677777654  6788888888764444443 7888888888888888886654 47888888888888


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChh-hhcccCCcceEEcccCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSS-IVGSNNNLYELSLDRSWGG  388 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~  388 (526)
                      +|.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|.+ ..++.. +..+ ++|+.|+++.|   
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l-~~~~~~~~~~l-~~L~~L~L~~N---  165 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK-ELRLNTNQL-QSIPAGAFDKL-TNLQTLSLSTN---  165 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTC-TTCCEEECCSS---
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc-EEECcCCcC-CccCHHHcCcC-cCCCEEECCCC---
Confidence            8876555555677888888888888654433334467888888 888888888 556554 4444 88888888443   


Q ss_pred             CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh
Q 038130          389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII  439 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~  439 (526)
                       ...   ......+..+. +|+.|++++|.+...+     +.+..++.|+.
T Consensus       166 -~l~---~~~~~~~~~l~-~L~~L~l~~N~~~c~~-----~~~~~l~~~~~  206 (251)
T 3m19_A          166 -QLQ---SVPHGAFDRLG-KLQTITLFGNQFDCSR-----CEILYLSQWIR  206 (251)
T ss_dssp             -CCS---CCCTTTTTTCT-TCCEEECCSCCBCTTS-----TTHHHHHHHHH
T ss_pred             -cCC---ccCHHHHhCCC-CCCEEEeeCCceeCCc-----cccHHHHHHHH
Confidence             211   11111122333 7888888888765421     24444555654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=3.1e-15  Score=141.02  Aligned_cols=179  Identities=22%  Similarity=0.251  Sum_probs=132.9

Q ss_pred             CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      ...++++++++ .+..+|. +.  .+++.|++++|.+..++. .++++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45778899885 4667775 43  578999999999986654 6889999999999998877666667888999999999


Q ss_pred             cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEE
Q 038130          333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL  412 (526)
Q Consensus       333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  412 (526)
                      ++|......+..+..+++|+ .|++++|.+ ..++...+..+++|+.|+++.|    ..   .......+..+. +|+.|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N----~l---~~~~~~~~~~l~-~L~~L  160 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLD-KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTN----QL---QSIPAGAFDKLT-NLQTL  160 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CC---CCCCTTTTTTCT-TCCEE
T ss_pred             CCCcccccChhHhcccCCCC-EEEcCCCcC-CCcChhHhccCCcccEEECcCC----cC---CccCHHHcCcCc-CCCEE
Confidence            99766555556678899999 999999999 5677665444499999999544    21   111111233444 89999


Q ss_pred             EccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130          413 YLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS  457 (526)
Q Consensus       413 ~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~  457 (526)
                      +|++|.++++|           +..+..+++|+.|++++|+....
T Consensus       161 ~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          161 SLSTNQLQSVP-----------HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ECCSSCCSCCC-----------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ECCCCcCCccC-----------HHHHhCCCCCCEEEeeCCceeCC
Confidence            99998776654           34667889999999999865443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=2.5e-15  Score=161.09  Aligned_cols=139  Identities=20%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             CCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccC
Q 038130          242 VSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLP  318 (526)
Q Consensus       242 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp  318 (526)
                      ..+..+|..+.  +.+++|+|++|. ++.+|  .|.++++|++|+|++|.|+.+|. .|++|++|++|+|++|.+.+..|
T Consensus        41 ~~l~~vP~~lp--~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           41 LNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCcCccCCCCC--cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            56778887652  579999999975 56665  38999999999999999998876 58999999999999998544444


Q ss_pred             cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEcccC
Q 038130          319 SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       319 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ..+.++++|++|++++|......+..|+++++|+ .|++++|.+.. .+|..+..+ ++|++|+++.|
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~-~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N  183 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSN  183 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGC-TTCCEEECCSS
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC-eeccccCccccCCCchhhccc-hhhhhhcccCc
Confidence            5689999999999999765444445699999999 99999999843 356666666 99999999654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=9.1e-16  Score=149.54  Aligned_cols=149  Identities=15%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             cceEEEeccCCCCCCCChhc--cccCCCcEEeeCCCCCCCcCCC-----CCCCCcccEEEecccCCcccC-ccccCCCCC
Q 038130          232 TLVILNLSEYVSLNSLPAEI--LHLEFLKKLNLLGCSKLKRLPE-----FSSSGKIEEIWLDGTAIEELP-SSIGCLSRL  303 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~lp~-----~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L  303 (526)
                      .++.|++++|......|..+  ..+++|++|++++|......+.     +..+++|++|++++|.+..+| ..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35555555544444444433  4455555555555443322221     233445555555555554333 344455555


Q ss_pred             CEEeccCCccCcc--cC--cCCCCCCCCcEEeecCCCCCCcCCCc----ccCcccccceeeccccccccccChhhhcc--
Q 038130          304 LYLYLSDCKRLKS--LP--SSLSQLKSLKLLNLHGCSNLQRLPDD----FGNLEASNSTLYAKGTAAKREVPSSIVGS--  373 (526)
Q Consensus       304 ~~L~L~~~~~~~~--lp--~~i~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~~L~l~~~~~~~~~~~~l~~~--  373 (526)
                      ++|++++|.+.+.  ++  ..+..+++|++|++++|.. +.+|..    ++.+++|+ +|++++|.+.+..|..+...  
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPH-SLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCS-SEECTTSCCCCCCCSCCSSCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCC-EEECCCCCCCccchhhHHhccC
Confidence            5555555443321  11  1123445555555555322 222221    23344444 55555555533334333322  


Q ss_pred             cCCcceEEc
Q 038130          374 NNNLYELSL  382 (526)
Q Consensus       374 ~~~L~~L~l  382 (526)
                      +++|++|++
T Consensus       250 ~~~L~~L~L  258 (310)
T 4glp_A          250 SSALNSLNL  258 (310)
T ss_dssp             CTTCCCEEC
T ss_pred             cCcCCEEEC
Confidence            134444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=7.8e-18  Score=169.58  Aligned_cols=254  Identities=15%  Similarity=0.090  Sum_probs=145.6

Q ss_pred             CCCChhccccCCCcEEeeCCCCCCCc----CC-CCCCCCcccEEEecccCCc----ccCccc-------cCCCCCCEEec
Q 038130          245 NSLPAEILHLEFLKKLNLLGCSKLKR----LP-EFSSSGKIEEIWLDGTAIE----ELPSSI-------GCLSRLLYLYL  308 (526)
Q Consensus       245 ~~lp~~~~~l~~L~~L~l~~~~~~~~----lp-~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L  308 (526)
                      ..++..+..+++|++|++++|.....    ++ .+..+++|++|+|+++.+.    .+|..+       ..+++|++|+|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34556666677777777777643322    11 2556777777777765443    234333       56777777777


Q ss_pred             cCCccCc----ccCcCCCCCCCCcEEeecCCCCCCc----CCCcccCc---------ccccceeeccccccc-cccC---
Q 038130          309 SDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQR----LPDDFGNL---------EASNSTLYAKGTAAK-REVP---  367 (526)
Q Consensus       309 ~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~~L~l~~~~~~-~~~~---  367 (526)
                      ++|.+..    .+|..+..+++|++|++++|.....    ++..+..+         ++|+ .|++++|.+. ..++   
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR-SIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC-EEECCSSCCTGGGHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc-EEECCCCCCCcHHHHHHH
Confidence            7776554    3566667777777777777654322    22223333         6677 7777777774 2333   


Q ss_pred             hhhhcccCCcceEEcccCCCCCCCCCCCC---CcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCC
Q 038130          368 SSIVGSNNNLYELSLDRSWGGDKQMGLSS---PITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRL  444 (526)
Q Consensus       368 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L  444 (526)
                      ..+... ++|++|+++.|    .. ...+   ..+..+..+ ++|+.|+|++|.++.       .....+|..+..+++|
T Consensus       181 ~~l~~~-~~L~~L~L~~n----~l-~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          181 KTFQSH-RLLHTVKMVQN----GI-RPEGIEHLLLEGLAYC-QELKVLDLQDNTFTH-------LGSSALAIALKSWPNL  246 (386)
T ss_dssp             HHHHHC-TTCCEEECCSS----CC-CHHHHHHHHHTTGGGC-TTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTC
T ss_pred             HHHHhC-CCcCEEECcCC----CC-CHhHHHHHHHHHhhcC-CCccEEECcCCCCCc-------HHHHHHHHHHccCCCc
Confidence            233344 77777777433    11 0000   000012233 378888887776431       0123566677777888


Q ss_pred             CEecccCCccCCc----CCCc-----cccccccccccccccc----cCC-----CCCCCCEEeccCCCCCCHHHHHHHHH
Q 038130          445 VVLNLNYCERLQS----LPKL-----PFNLQGIFAHHCTALS----SIS-----YKSSTQLFDLSDNFKLDRNAVRIIVE  506 (526)
Q Consensus       445 ~~L~L~~~~~l~~----lp~~-----~~~L~~L~l~~c~~L~----~l~-----~~~~L~~L~l~~c~~l~~~~~~~~~~  506 (526)
                      +.|+|++|.....    +|..     .++|+.|++++|.--.    .++     .+++|++|++++|+--........+.
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~  326 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR  326 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH
Confidence            8888887753222    2321     4677788887765333    133     37999999999997655554333444


Q ss_pred             HHHhhhH
Q 038130          507 DALQDIQ  513 (526)
Q Consensus       507 ~~~~~~~  513 (526)
                      ..+++.+
T Consensus       327 ~~l~~~~  333 (386)
T 2ca6_A          327 EVFSTRG  333 (386)
T ss_dssp             HHHHHHT
T ss_pred             HHhhhcC
Confidence            4455544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=9.7e-17  Score=156.44  Aligned_cols=227  Identities=15%  Similarity=0.120  Sum_probs=146.7

Q ss_pred             hhcCcceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCcCCC-C--CCCCcccEEEecccCCcc-cC----c
Q 038130          228 LIVNTLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKRLPE-F--SSSGKIEEIWLDGTAIEE-LP----S  295 (526)
Q Consensus       228 ~~~~~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~L~~~~i~~-lp----~  295 (526)
                      .....++.+.+.++....    .+.. +..+++|++|++++|......|. +  ..+.+|++|++++|.+.. .|    .
T Consensus        61 ~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           61 VKALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             GSSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hhhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            344456777777643211    1111 22357799999999876656664 4  788999999999998874 22    3


Q ss_pred             cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCc--C--CCcccCcccccceeeccccccccccChh--
Q 038130          296 SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQR--L--PDDFGNLEASNSTLYAKGTAAKREVPSS--  369 (526)
Q Consensus       296 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--l--p~~~~~l~~L~~~L~l~~~~~~~~~~~~--  369 (526)
                      .+..+++|++|++++|.+....|..++.+++|++|++++|...+.  +  +..++.+++|+ .|++++|.+ ..++..  
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l-~~l~~~~~  217 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ-NLALRNTGM-ETPTGVCA  217 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC-SCBCCSSCC-CCHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC-EEECCCCCC-CchHHHHH
Confidence            356788999999999887666677888999999999999765432  2  22346788888 999999988 444442  


Q ss_pred             -hhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEec
Q 038130          370 -IVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLN  448 (526)
Q Consensus       370 -l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~  448 (526)
                       +...+++|++|+++.|    ......+.....+.+. ++|++|++++|.++++|            ..+  .++|+.|+
T Consensus       218 ~l~~~l~~L~~L~Ls~N----~l~~~~p~~~~~~~~~-~~L~~L~Ls~N~l~~lp------------~~~--~~~L~~L~  278 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHN----SLRATVNPSAPRCMWS-SALNSLNLSFAGLEQVP------------KGL--PAKLRVLD  278 (310)
T ss_dssp             HHHHHTCCCSSEECTTS----CCCCCCCSCCSSCCCC-TTCCCEECCSSCCCSCC------------SCC--CSCCSCEE
T ss_pred             HHHhcCCCCCEEECCCC----CCCccchhhHHhccCc-CcCCEEECCCCCCCchh------------hhh--cCCCCEEE
Confidence             3333388899988554    2111111111111112 48888888888766554            222  26888888


Q ss_pred             ccCCccCCcCCCccccccccccccccccccCCCCCCCCEEeccCCCC
Q 038130          449 LNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFK  495 (526)
Q Consensus       449 L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~~c~~  495 (526)
                      +++|. +..+|.                  +..+++|+.|++++|+-
T Consensus       279 Ls~N~-l~~~~~------------------~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          279 LSSNR-LNRAPQ------------------PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCSCC-CCSCCC------------------TTSCCCCSCEECSSTTT
T ss_pred             CCCCc-CCCCch------------------hhhCCCccEEECcCCCC
Confidence            88883 333321                  23457777888888763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=8.3e-16  Score=159.24  Aligned_cols=196  Identities=17%  Similarity=0.116  Sum_probs=138.6

Q ss_pred             CCChhcccc----CCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcC
Q 038130          246 SLPAEILHL----EFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS  320 (526)
Q Consensus       246 ~lp~~~~~l----~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~  320 (526)
                      .+|..+..+    ++|++|++++|......| .+..+++|++|+|++|.++.+++ ++.+++|++|+|++|.+ ..+|. 
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~-   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELLV-   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEEE-
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCCC-
Confidence            445544444    489999999986544444 48999999999999999987665 99999999999999874 44543 


Q ss_pred             CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCccc
Q 038130          321 LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITL  400 (526)
Q Consensus       321 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  400 (526)
                         .++|++|++++|......+.   .+++|+ .|++++|.+.+..|..+..+ ++|+.|+++.|    .   ..+..+.
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~~---~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N----~---l~~~~~~  162 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSCS---RGQGKK-NIYLANNKITMLRDLDEGCR-SRVQYLDLKLN----E---IDTVNFA  162 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEEC---CCSSCE-EEECCSSCCCSGGGBCGGGG-SSEEEEECTTS----C---CCEEEGG
T ss_pred             ---CCCcCEEECcCCcCCCCCcc---ccCCCC-EEECCCCCCCCCCchhhcCC-CCCCEEECCCC----C---CCCcChH
Confidence               38999999999765554443   356788 99999999965556666666 99999999554    2   2221222


Q ss_pred             CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccccc
Q 038130          401 PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHC  473 (526)
Q Consensus       401 ~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c  473 (526)
                      .+....++|+.|+|++|.++++|             ....+++|+.|+|++|. +..+|+.   +++|+.|+++++
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred             HHhhhCCcccEEecCCCcccccc-------------ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC
Confidence            23323359999999999766532             22358899999999984 4455532   345666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=2.2e-17  Score=170.30  Aligned_cols=239  Identities=16%  Similarity=0.100  Sum_probs=116.3

Q ss_pred             cCcceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCc-CCCC-CCCC----cccEEEecccCCc-----ccC
Q 038130          230 VNTLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKR-LPEF-SSSG----KIEEIWLDGTAIE-----ELP  294 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~-~~l~----~L~~L~L~~~~i~-----~lp  294 (526)
                      .+++++|++++|....    .++..+..+++|++|++++|..... +..+ ..+.    +|++|++++|.++     .+|
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            3566777777654221    3345556667777777776542221 1111 1222    5677777777666     346


Q ss_pred             ccccCCCCCCEEeccCCccCcccCcC-----CCCCCCCcEEeecCCCCCCc----CCCcccCcccccceeeccccccccc
Q 038130          295 SSIGCLSRLLYLYLSDCKRLKSLPSS-----LSQLKSLKLLNLHGCSNLQR----LPDDFGNLEASNSTLYAKGTAAKRE  365 (526)
Q Consensus       295 ~~i~~L~~L~~L~L~~~~~~~~lp~~-----i~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~~~~  365 (526)
                      ..+..+++|++|++++|.+....+..     ....++|++|++++|.....    ++..+..+++|+ .|++++|.+...
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~  185 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK-ELTVSNNDINEA  185 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC-EEECCSSBCHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC-EEECcCCCcchH
Confidence            66667777777777776643222211     11245667777766543331    233444556666 666666665332


Q ss_pred             cChhhhc----ccCCcceEEcccCCCCCCCCCCCC-CcccCcccccCcccEEEccCCCCCCC-------------CCc--
Q 038130          366 VPSSIVG----SNNNLYELSLDRSWGGDKQMGLSS-PITLPLDGLHTTLTSLYLNYCGILEL-------------PDS--  425 (526)
Q Consensus       366 ~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~l-------------p~~--  425 (526)
                      .+..+..    ..++|++|+++    +|....... .....+.. .++|++|++++|.++..             +..  
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~----~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~  260 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLE----SCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  260 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECT----TSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHHHHHHHhcCCCCceEEEcc----CCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence            2222221    12466666663    221100000 00000111 12555555555544321             110  


Q ss_pred             --cCCCCccc-----ccHHHhccCCCCEecccCCccCCc----CC----Ccccccccccccccc
Q 038130          426 --LEKNNFER-----IPESIIQLSRLVVLNLNYCERLQS----LP----KLPFNLQGIFAHHCT  474 (526)
Q Consensus       426 --l~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~l~~----lp----~~~~~L~~L~l~~c~  474 (526)
                        +++|.++.     ++..+..+++|++|++++|..-..    +.    ...++|+.|++++|.
T Consensus       261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence              44445544     566677777788888877742111    11    112466666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=4.9e-15  Score=142.85  Aligned_cols=169  Identities=24%  Similarity=0.372  Sum_probs=96.8

Q ss_pred             cccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130          252 LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN  331 (526)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~  331 (526)
                      ..+++|++|++++|. +..++.+..+++|++|++++|.++.++. +..+++|++|++++|.+ ..+|. +..+++|++|+
T Consensus        43 ~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           43 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEE
T ss_pred             hhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEE
Confidence            346666666666643 4455556666666666666666666555 66666666666666653 33443 66666666666


Q ss_pred             ecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccE
Q 038130          332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS  411 (526)
Q Consensus       332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  411 (526)
                      +++|.. ..+ ..+..+++|+ .|++++|.+ ..+ ..+..+ ++|+.|+++.|    .....   .+  +..+. +|+.
T Consensus       119 L~~n~i-~~~-~~l~~l~~L~-~L~l~~n~l-~~~-~~l~~l-~~L~~L~L~~N----~l~~~---~~--l~~l~-~L~~  182 (291)
T 1h6t_A          119 LEHNGI-SDI-NGLVHLPQLE-SLYLGNNKI-TDI-TVLSRL-TKLDTLSLEDN----QISDI---VP--LAGLT-KLQN  182 (291)
T ss_dssp             CTTSCC-CCC-GGGGGCTTCC-EEECCSSCC-CCC-GGGGGC-TTCSEEECCSS----CCCCC---GG--GTTCT-TCCE
T ss_pred             CCCCcC-CCC-hhhcCCCCCC-EEEccCCcC-Ccc-hhhccC-CCCCEEEccCC----ccccc---hh--hcCCC-ccCE
Confidence            666533 333 3456666666 666666666 333 334444 66677766332    21111   11  22333 7777


Q ss_pred             EEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130          412 LYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE  453 (526)
Q Consensus       412 L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~  453 (526)
                      |++++|.++.            +| .+..+++|+.|++++|+
T Consensus       183 L~L~~N~i~~------------l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          183 LYLSKNHISD------------LR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EECCSSCCCB------------CG-GGTTCTTCSEEEEEEEE
T ss_pred             EECCCCcCCC------------Ch-hhccCCCCCEEECcCCc
Confidence            7777765443            23 35667777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=1.5e-16  Score=156.93  Aligned_cols=236  Identities=15%  Similarity=0.111  Sum_probs=173.2

Q ss_pred             CCCcEEeeCCCCCCCcCCCCCCC--CcccEEEecccCCcccCccccCCCCCCEEeccCCccCcc-cCcCCCCCCCCcEEe
Q 038130          255 EFLKKLNLLGCSKLKRLPEFSSS--GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKS-LPSSLSQLKSLKLLN  331 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~~~~l--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~  331 (526)
                      ..++.++++++....  ..+..+  .+++.|++++|.+...+..+..+++|++|++++|.+... +|..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            347899999865331  124445  789999999999997777788999999999999986654 787889999999999


Q ss_pred             ecCCCCCCcCCCcccCcccccceeecccc-cccc-ccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccC-c
Q 038130          332 LHGCSNLQRLPDDFGNLEASNSTLYAKGT-AAKR-EVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT-T  408 (526)
Q Consensus       332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~-~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~  408 (526)
                      +++|......|..++++++|+ .|++++| .+++ .++..+... ++|++|++    .+|..+...+ . .......+ +
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~-~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l----~~~~~l~~~~-~-~~~~~~l~~~  196 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLV-RLNLSGCSGFSEFALQTLLSSC-SRLDELNL----SWCFDFTEKH-V-QVAVAHVSET  196 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCS-EEECTTCBSCCHHHHHHHHHHC-TTCCEEEC----CCCTTCCHHH-H-HHHHHHSCTT
T ss_pred             CcCcccCHHHHHHHhcCCCCC-EEECCCCCCCCHHHHHHHHhcC-CCCCEEcC----CCCCCcChHH-H-HHHHHhcccC
Confidence            999876666777888999999 9999999 6744 255555555 99999999    5552222110 0 11123345 9


Q ss_pred             ccEEEccCCC--CCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC-cCCC---ccccccccccccccccc-----
Q 038130          409 LTSLYLNYCG--ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ-SLPK---LPFNLQGIFAHHCTALS-----  477 (526)
Q Consensus       409 L~~L~L~~~~--~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~---~~~~L~~L~l~~c~~L~-----  477 (526)
                      |++|++++|.  ++.          ..+|..+..+++|+.|++++|..++ ..+.   ..++|+.|++++|..+.     
T Consensus       197 L~~L~l~~~~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  266 (336)
T 2ast_B          197 ITQLNLSGYRKNLQK----------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL  266 (336)
T ss_dssp             CCEEECCSCGGGSCH----------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             CCEEEeCCCcccCCH----------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence            9999999984  221          3567788899999999999997543 3332   25799999999996443     


Q ss_pred             cCCCCCCCCEEeccCCCCCCHHHHHHHHHHHHhhhH
Q 038130          478 SISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQ  513 (526)
Q Consensus       478 ~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  513 (526)
                      .+..+++|+.|++++|  ++......+. ..++.++
T Consensus       267 ~l~~~~~L~~L~l~~~--i~~~~~~~l~-~~l~~L~  299 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI--VPDGTLQLLK-EALPHLQ  299 (336)
T ss_dssp             GGGGCTTCCEEECTTS--SCTTCHHHHH-HHSTTSE
T ss_pred             HHhcCCCCCEEeccCc--cCHHHHHHHH-hhCcceE
Confidence            3557999999999999  6665555443 2344444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=4.5e-15  Score=134.46  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEecc
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~  309 (526)
                      ..++.|++++| .+..+| .+..+++|++|++++| .+..++.+..+++|++|++++|.++. .|..++.+++|++|+++
T Consensus        44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            35666777663 344555 4666677777777766 44555556666666777777666663 55666666677777777


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      +|.+....|..+..+++|++|++++|..++.+| .+..+++|+ .|++++|.+ ..++ .+..+ ++|+.|++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~-~L~l~~n~i-~~~~-~l~~l-~~L~~L~l  188 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK-SLNIQFDGV-HDYR-GIEDF-PKLNQLYA  188 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC-EEECTTBCC-CCCT-TGGGC-SSCCEEEE
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC-EEECCCCCC-cChH-HhccC-CCCCEEEe
Confidence            666555555556666666666666655445554 456666666 666666665 3333 33333 44444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=6.7e-15  Score=154.03  Aligned_cols=190  Identities=18%  Similarity=0.204  Sum_probs=143.1

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      .+++.|++++| .+..+|..+  +++|++|++++|. +..+|  ..+++|++|++++|.|+.+|. +..  +|++|++++
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            47899999996 456688766  4899999999975 55788  667899999999999999998 765  999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+.+ +|.   .+++|++|++++|. ++.+|.   .+++|+ .|++++|.+ ..+|. +.   ++|+.|+++.|    .
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~-~L~Ls~N~L-~~lp~-l~---~~L~~L~Ls~N----~  191 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQ-LTMLPE---LPTSLE-VLSVRNNQL-TFLPE-LP---ESLEALDVSTN----L  191 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCC-EEECCSSCC-SCCCC-CC---TTCCEEECCSS----C
T ss_pred             CcCCC-CCC---cCccccEEeCCCCc-cCcCCC---cCCCcC-EEECCCCCC-CCcch-hh---CCCCEEECcCC----C
Confidence            98554 887   68999999999965 455776   567888 999999999 55887 43   89999999554    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                      .. ..+.....+....+.|+.|+|++|.++            .+|.++..+++|+.|+|++|+..+.+|.
T Consensus       192 L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          192 LE-SLPAVPVRNHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CS-SCCCCC--------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CC-chhhHHHhhhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            11 111111011111123399999998654            5677778899999999999976666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=7.9e-17  Score=160.67  Aligned_cols=247  Identities=15%  Similarity=0.115  Sum_probs=130.2

Q ss_pred             EEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC------CCCCCC-cccEEEecccCCccc-CccccCC-----CC
Q 038130          236 LNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP------EFSSSG-KIEEIWLDGTAIEEL-PSSIGCL-----SR  302 (526)
Q Consensus       236 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp------~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~  302 (526)
                      ++++.+.....+|..+...++|++|++++|. +...+      .+..++ +|++|++++|.++.. +..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3455544444445544444557777777754 33332      144555 677777777776643 3334433     67


Q ss_pred             CCEEeccCCccCcccCcC----CCCC-CCCcEEeecCCCCCCcCCCc----ccC-cccccceeecccccccc----ccCh
Q 038130          303 LLYLYLSDCKRLKSLPSS----LSQL-KSLKLLNLHGCSNLQRLPDD----FGN-LEASNSTLYAKGTAAKR----EVPS  368 (526)
Q Consensus       303 L~~L~L~~~~~~~~lp~~----i~~l-~~L~~L~l~~~~~~~~lp~~----~~~-l~~L~~~L~l~~~~~~~----~~~~  368 (526)
                      |++|++++|.+....+..    +..+ ++|++|++++|......+..    +.. .++|+ .|++++|.+..    .++.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT-SLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC-EEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee-EEEccCCcCCHHHHHHHHH
Confidence            777777776644333332    2233 67777777776533322222    222 14666 77777776632    2333


Q ss_pred             hhhcccCCcceEEcccCCCCCCCCCCCCCccc--CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCC
Q 038130          369 SIVGSNNNLYELSLDRSWGGDKQMGLSSPITL--PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLV  445 (526)
Q Consensus       369 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~  445 (526)
                      .+....++|++|+++.    |.... .+....  .+...+++|++|+|++|.++.       .....++..+..+ ++|+
T Consensus       161 ~l~~~~~~L~~L~Ls~----n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~~~l~~~l~~~~~~L~  228 (362)
T 3goz_A          161 ILAAIPANVNSLNLRG----NNLAS-KNCAELAKFLASIPASVTSLDLSANLLGL-------KSYAELAYIFSSIPNHVV  228 (362)
T ss_dssp             HHHTSCTTCCEEECTT----SCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHHSCTTCC
T ss_pred             HHhcCCccccEeeecC----CCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHHHHHHHHHhcCCCCce
Confidence            3334423677777733    32111 110000  011121377777777776543       1233456556553 4777


Q ss_pred             EecccCCccCCcCC--------Ccccccccccccccc-------cc----ccCCCCCCCCEEeccCCCCCC
Q 038130          446 VLNLNYCERLQSLP--------KLPFNLQGIFAHHCT-------AL----SSISYKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       446 ~L~L~~~~~l~~lp--------~~~~~L~~L~l~~c~-------~L----~~l~~~~~L~~L~l~~c~~l~  497 (526)
                      .|+|++|. ++..+        ...++|+.|++++|.       .+    ..++.+++|+.|++++|+--.
T Consensus       229 ~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          229 SLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             EEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             EEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            77777774 33322        224567777777664       01    234567889999999987433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=9.7e-15  Score=154.43  Aligned_cols=120  Identities=22%  Similarity=0.358  Sum_probs=57.0

Q ss_pred             ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      .+++|+.|++++|. +..+|.+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+ ..+| .+..+++|++|++
T Consensus        41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEe
Confidence            34555555555432 3444445555555555555555554443 55555555555555442 2233 3455555555555


Q ss_pred             cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      ++|.. ..+ ..+..+++|+ .|++++|.+ ..+ ..+..+ ++|+.|++
T Consensus       117 s~N~l-~~l-~~l~~l~~L~-~L~Ls~N~l-~~l-~~l~~l-~~L~~L~L  160 (605)
T 1m9s_A          117 EHNGI-SDI-NGLVHLPQLE-SLYLGNNKI-TDI-TVLSRL-TKLDTLSL  160 (605)
T ss_dssp             TTSCC-CCC-GGGGGCTTCS-EEECCSSCC-CCC-GGGGSC-TTCSEEEC
T ss_pred             cCCCC-CCC-ccccCCCccC-EEECCCCcc-CCc-hhhccc-CCCCEEEC
Confidence            55432 222 2344555555 555555555 223 223333 55555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=1.1e-14  Score=133.00  Aligned_cols=167  Identities=21%  Similarity=0.206  Sum_probs=113.5

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~  310 (526)
                      +.++.++ ..+..+|..+  .++|++|++++|. +..++.  +..+.+|++|++++|.++.+|.. +..+++|++|++++
T Consensus        10 ~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYS-QGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCS-SCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecC-CCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            4556655 4556667544  4688899998875 444443  67888889999998888877765 57888899999988


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|.+ ..++......+++|+.|+++.|.    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~----  159 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK-DLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP----  159 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEECCSCC----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC-EEECCCCcc-ceeCHHHhccCCCccEEEecCCC----
Confidence            875544444467888889998888655444444578888888 888888888 45555543333777777774431    


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILE  421 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  421 (526)
                                 +...+++|+.|+++.|.+++
T Consensus       160 -----------~~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          160 -----------WDCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             -----------BCCCTTTTHHHHHHHHHCTT
T ss_pred             -----------eecCCCCHHHHHHHHHhCCc
Confidence                       11122366777777666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=6.3e-17  Score=162.88  Aligned_cols=232  Identities=16%  Similarity=0.108  Sum_probs=142.0

Q ss_pred             hcCcceEEEeccCCCCCC----CChhccccCCCcEEeeCCCCCC--C-cCCC--------CCCCCcccEEEecccCCcc-
Q 038130          229 IVNTLVILNLSEYVSLNS----LPAEILHLEFLKKLNLLGCSKL--K-RLPE--------FSSSGKIEEIWLDGTAIEE-  292 (526)
Q Consensus       229 ~~~~l~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~--~-~lp~--------~~~l~~L~~L~L~~~~i~~-  292 (526)
                      ..++++.|++++|.....    ++..+..+++|++|++++|..-  . .+|.        +..+++|++|+|++|.++. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            346688888888644333    2334567888888888886321  1 2231        3577888888888888875 


Q ss_pred             ----cCccccCCCCCCEEeccCCccCcc----cCcCCCCC---------CCCcEEeecCCCCC-CcCC---CcccCcccc
Q 038130          293 ----LPSSIGCLSRLLYLYLSDCKRLKS----LPSSLSQL---------KSLKLLNLHGCSNL-QRLP---DDFGNLEAS  351 (526)
Q Consensus       293 ----lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~l---------~~L~~L~l~~~~~~-~~lp---~~~~~l~~L  351 (526)
                          +|..+..+++|++|+|++|.+...    ++..+..+         ++|++|++++|... ..+|   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                677788888888888888875432    23333334         78888888887654 2344   356667778


Q ss_pred             cceeecccccccc-----ccChhhhcccCCcceEEcccCCCCCCCCCCC--CCcccCcccccCcccEEEccCCCCCCCCC
Q 038130          352 NSTLYAKGTAAKR-----EVPSSIVGSNNNLYELSLDRSWGGDKQMGLS--SPITLPLDGLHTTLTSLYLNYCGILELPD  424 (526)
Q Consensus       352 ~~~L~l~~~~~~~-----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~lp~  424 (526)
                      + .|++++|.+..     .++..+... ++|+.|+++.|    .. ...  ...+..+... ++|+.|+|++|.++..  
T Consensus       190 ~-~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n----~l-~~~g~~~l~~~l~~~-~~L~~L~L~~n~i~~~--  259 (386)
T 2ca6_A          190 H-TVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDN----TF-THLGSSALAIALKSW-PNLRELGLNDCLLSAR--  259 (386)
T ss_dssp             C-EEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSS----CC-HHHHHHHHHHHGGGC-TTCCEEECTTCCCCHH--
T ss_pred             C-EEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCC----CC-CcHHHHHHHHHHccC-CCcCEEECCCCCCchh--
Confidence            8 88888887732     222244445 88888888443    21 000  0011112233 3888888888875431  


Q ss_pred             ccCCCCcccccHHHhc--cCCCCEecccCCccCC----cCCCc----cccccccccccccc
Q 038130          425 SLEKNNFERIPESIIQ--LSRLVVLNLNYCERLQ----SLPKL----PFNLQGIFAHHCTA  475 (526)
Q Consensus       425 ~l~~~~l~~lp~~l~~--l~~L~~L~L~~~~~l~----~lp~~----~~~L~~L~l~~c~~  475 (526)
                           ....+|.++..  +++|+.|+|++|....    .+|..    +++|+.|++++|+-
T Consensus       260 -----~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          260 -----GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             -----HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             -----hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence                 12234556643  7778888887775433    25542    36777777777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=5.3e-17  Score=167.42  Aligned_cols=268  Identities=16%  Similarity=0.113  Sum_probs=142.8

Q ss_pred             cceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCc----CCC--CCCCCcccEEEecccCCcc-----cCcc
Q 038130          232 TLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKR----LPE--FSSSGKIEEIWLDGTAIEE-----LPSS  296 (526)
Q Consensus       232 ~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----lp~--~~~l~~L~~L~L~~~~i~~-----lp~~  296 (526)
                      ++++|++++|....    .++..+..+++|++|++++|.....    +..  .....+|++|++++|.++.     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46777777754321    3455666677777777777652211    111  2224456777777666652     3445


Q ss_pred             ccCCCCCCEEeccCCccCcccCcCCC-----CCCCCcEEeecCCCCCCc----CCCcccCcccccceeecccccccccc-
Q 038130          297 IGCLSRLLYLYLSDCKRLKSLPSSLS-----QLKSLKLLNLHGCSNLQR----LPDDFGNLEASNSTLYAKGTAAKREV-  366 (526)
Q Consensus       297 i~~L~~L~~L~L~~~~~~~~lp~~i~-----~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~~~~~-  366 (526)
                      +..+++|++|++++|.+....+..+.     ..++|++|++++|.....    ++..+..+++|+ .|++++|.+.... 
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR-ELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC-EEECCSSBCHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc-EEeccCCcCChHHH
Confidence            56666777777776654332222221     244666666666543321    344455555666 6666666552221 


Q ss_pred             ---ChhhhcccCCcceEEcccCCCCCCCCCCCCC--cccCcccccCcccEEEccCCCCCCC-------------CCc---
Q 038130          367 ---PSSIVGSNNNLYELSLDRSWGGDKQMGLSSP--ITLPLDGLHTTLTSLYLNYCGILEL-------------PDS---  425 (526)
Q Consensus       367 ---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~l-------------p~~---  425 (526)
                         ...+...+++|+.|+++    +|.. ...+.  ....+... ++|++|++++|.+...             |..   
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~----~n~l-~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIW----ECGI-TAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECT----TSCC-CHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHhcCCCCceEEECc----CCCC-CHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence               12222222566666662    2210 00000  00001111 2455555555544310             000   


Q ss_pred             -cCCCCcc-----cccHHHhccCCCCEecccCCccCCcCC--------Cccccccccccccccccc----cCC----CCC
Q 038130          426 -LEKNNFE-----RIPESIIQLSRLVVLNLNYCERLQSLP--------KLPFNLQGIFAHHCTALS----SIS----YKS  483 (526)
Q Consensus       426 -l~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~l~~lp--------~~~~~L~~L~l~~c~~L~----~l~----~~~  483 (526)
                       +++|.++     .+|.++..+++|+.|++++|..-..-+        ...++|+.|++++|.--.    .++    .++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence             3334443     467788889999999999995322111        124589999999985322    332    489


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHHH
Q 038130          484 STQLFDLSDNFKLDRNAVRIIVED  507 (526)
Q Consensus       484 ~L~~L~l~~c~~l~~~~~~~~~~~  507 (526)
                      +|++|++++| .++..+...+.+.
T Consensus       399 ~L~~L~l~~N-~i~~~~~~~l~~~  421 (461)
T 1z7x_W          399 SLRELDLSNN-CLGDAGILQLVES  421 (461)
T ss_dssp             CCCEEECCSS-SCCHHHHHHHHHH
T ss_pred             CccEEECCCC-CCCHHHHHHHHHH
Confidence            9999999999 5777777666543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.1e-14  Score=131.80  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=123.3

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      ...+++|++|++++|. +..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|.+....|..++.+++|++|
T Consensus        40 ~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           40 EAQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhhcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3668999999999965 667888899999999999999887765 68999999999999998777788889999999999


Q ss_pred             eecCCCCCCcCCCcccCcccccceeeccccc-cccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcc
Q 038130          331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTA-AKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL  409 (526)
Q Consensus       331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  409 (526)
                      ++++|......|..++.+++|+ .|++++|. + +.++ .+..+ ++|+.|+++.    |......     .+..++ +|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~~i-~~~~-~l~~l-~~L~~L~l~~----n~i~~~~-----~l~~l~-~L  183 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVN-SIDLSYNGAI-TDIM-PLKTL-PELKSLNIQF----DGVHDYR-----GIEDFP-KL  183 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCC-EEECCSCTBC-CCCG-GGGGC-SSCCEEECTT----BCCCCCT-----TGGGCS-SC
T ss_pred             EecCCccCcHhHHHHhhCCCCC-EEEccCCCCc-cccH-hhcCC-CCCCEEECCC----CCCcChH-----HhccCC-CC
Confidence            9999877666778899999999 99999998 6 7776 46566 9999999944    3322111     233444 89


Q ss_pred             cEEEccCCCCC
Q 038130          410 TSLYLNYCGIL  420 (526)
Q Consensus       410 ~~L~L~~~~~~  420 (526)
                      +.|++++|.+.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            99999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=4e-14  Score=140.91  Aligned_cols=145  Identities=21%  Similarity=0.240  Sum_probs=105.6

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-C-CC-CCCcccEEEecccCCcccCc-cccCCCCCCEEecc
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-E-FS-SSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLS  309 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~-~~-~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~  309 (526)
                      +++++++ ..+..+|..+.  +.+++|+|++|. +..++ . +. .+.+|++|+|++|.|+.++. .+.++++|++|+|+
T Consensus        21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCS-SCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCC-CCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            5677777 56677776553  568888888875 44444 3 54 78888888888888887764 58888888888888


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhh---cccCCcceEEccc
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIV---GSNNNLYELSLDR  384 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~  384 (526)
                      +|.+....+..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..+|..++   ..+++|+.|+++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-KLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-EEECCSSCC-CSCCGGGTC----CTTCCEEECCS
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC-EEECCCCcC-CeeCHHHhcCcccCCcCCEEECCC
Confidence            8875554555678888888888888766555567788888888 888888888 66776654   2236677777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=7.5e-14  Score=127.49  Aligned_cols=179  Identities=16%  Similarity=0.149  Sum_probs=121.7

Q ss_pred             cEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130          258 KKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS  336 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~  336 (526)
                      +.++.+++ .+..+|. .-..++++|++++|.++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        10 ~~v~c~~~-~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSS-CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCC-CccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56666664 3555663 1235789999999999877764 6889999999999987554444456789999999999876


Q ss_pred             CCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccC
Q 038130          337 NLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNY  416 (526)
Q Consensus       337 ~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  416 (526)
                      .....+..+.++++|+ .|++++|.+ ..++...+..+++|+.|+++.|    .....   ....+..+ ++|+.|++++
T Consensus        88 l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N----~l~~~---~~~~~~~l-~~L~~L~l~~  157 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLK-ELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN----QLKSV---PDGVFDRL-TSLQYIWLHD  157 (208)
T ss_dssp             CCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCSCC---CTTTTTTC-TTCCEEECCS
T ss_pred             CCccCHhHhcCccCCC-EEEcCCCcC-cccCHhHhccCCcCCEEECCCC----cccee---CHHHhccC-CCccEEEecC
Confidence            5444444578899999 999999988 5666654444488888888543    21111   11112233 3888888888


Q ss_pred             CCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccc
Q 038130          417 CGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ  466 (526)
Q Consensus       417 ~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~  466 (526)
                      |.+.                  +.+++|+.|+++.|...+.+|..+.++.
T Consensus       158 N~~~------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          158 NPWD------------------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CCBC------------------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCee------------------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            8643                  2456777777777777777776544443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=6.4e-14  Score=129.10  Aligned_cols=145  Identities=25%  Similarity=0.299  Sum_probs=86.4

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  310 (526)
                      +.++.++ ..+..+|..+.  +.|+.|++++|. +..++  .+..+.+|++|+|++|.++.+ |..+.++++|++|+|++
T Consensus        14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTT-SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCC-CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4555555 45566665443  567777777754 33333  366677777777777777655 55677777777777777


Q ss_pred             CccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          311 CKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       311 ~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |.+. .+|.. +..+++|++|++++|......|..+..+++|+ .|++++|.+ ..++...+..+++|+.|++..|
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN-LLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC-EEECCCCcC-CEECHHHHhCCCCCCEEEeCCC
Confidence            6643 34433 46677777777777655554555666777777 777777766 4444332222255555555433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=9.2e-14  Score=128.94  Aligned_cols=147  Identities=20%  Similarity=0.199  Sum_probs=102.4

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD  310 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~  310 (526)
                      .+.++.++ ..+..+|..+.  ++|++|++++|......|. +..+.+|++|+|++|.++.+|.. +..+++|++|+|++
T Consensus        21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45677766 56677776553  7888888888764444443 77788888888888888877754 57888888888888


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |.+....+..+..+++|++|++++|. +..+|..+..+++|+ .|++++|.+ ..++...+..+++|+.|++..|
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLT-HLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCS-EEECCSSCC-CCCCTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCC-EEECCCCcC-CccCHHHHhCCCCCCEEEeeCC
Confidence            87554444446778888888888754 457777788888888 888888887 5555443333366666666444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=7.5e-14  Score=128.64  Aligned_cols=149  Identities=21%  Similarity=0.255  Sum_probs=105.7

Q ss_pred             cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130          258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~  335 (526)
                      +.++++++ .++.+|. +.  .+++.|++++|.|+.+|. .+..+++|++|+|++|.+....|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67888774 4666775 33  678999999999987766 6888999999999998877767888889999999999986


Q ss_pred             CCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130          336 SNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL  414 (526)
Q Consensus       336 ~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  414 (526)
                      .. ..+|. .+.++++|+ .|++++|.+.+..+..+..+ ++|+.|+++.|    ......   ...+..+ ++|+.|++
T Consensus        91 ~l-~~l~~~~f~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N----~l~~~~---~~~~~~l-~~L~~L~L  159 (220)
T 2v9t_B           91 KI-TELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDL-HNLNLLSLYDN----KLQTIA---KGTFSPL-RAIQTMHL  159 (220)
T ss_dssp             CC-CCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTC-TTCCEEECCSS----CCSCCC---TTTTTTC-TTCCEEEC
T ss_pred             cC-CccCHhHccCCCCCC-EEECCCCCCCEeCHHHcCCC-CCCCEEECCCC----cCCEEC---HHHHhCC-CCCCEEEe
Confidence            54 45554 468888898 99999998844444445444 88888888444    211111   1112233 37788888


Q ss_pred             cCCCCC
Q 038130          415 NYCGIL  420 (526)
Q Consensus       415 ~~~~~~  420 (526)
                      ++|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=5.1e-14  Score=129.80  Aligned_cols=145  Identities=18%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~  310 (526)
                      +.+++++ +.+..+|..+  ...+++|++++|......+.  +..+++|++|++++|.|+.++. .++++++|++|+|++
T Consensus        14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4566666 3455566544  23456777776543322232  5666677777777777765554 566677777777777


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      |.+.+..|..+..+++|++|++++|......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~  161 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR-LLSLYDNQITTVAPGAFDTL-HSLSTLNLL  161 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS-EEECTTSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC-EEECCCCcCCEECHHHhcCC-CCCCEEEec
Confidence            665444444566677777777776655555556666666666 67777766633334444333 555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=6.3e-14  Score=135.05  Aligned_cols=171  Identities=22%  Similarity=0.270  Sum_probs=135.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..++.|++++| .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+|. ++.+++|++|++++
T Consensus        46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred             CcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence            57899999995 5566665 8889999999999975 5556669999999999999999998775 99999999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.+. .++ .+..+++|++|++++|.. ..+ ..++.+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.|    .
T Consensus       122 n~i~-~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~-~L~L~~N~l-~~~~~-l~~l-~~L~~L~L~~N----~  189 (291)
T 1h6t_A          122 NGIS-DIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLD-TLSLEDNQI-SDIVP-LAGL-TKLQNLYLSKN----H  189 (291)
T ss_dssp             SCCC-CCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----C
T ss_pred             CcCC-CCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCC-EEEccCCcc-ccchh-hcCC-CccCEEECCCC----c
Confidence            9754 454 588999999999999754 444 5789999999 999999999 55555 5555 99999999544    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELP  423 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp  423 (526)
                      ....    + .+..+. +|+.|++++|.++..|
T Consensus       190 i~~l----~-~l~~l~-~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          190 ISDL----R-ALAGLK-NLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCBC----G-GGTTCT-TCSEEEEEEEEEECCC
T ss_pred             CCCC----h-hhccCC-CCCEEECcCCcccCCc
Confidence            1111    1 133444 9999999999876643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.50  E-value=4.7e-13  Score=140.08  Aligned_cols=164  Identities=22%  Similarity=0.269  Sum_probs=120.7

Q ss_pred             CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeec
Q 038130          255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH  333 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~  333 (526)
                      .+|++|++++|. +..+|. +  .++|++|++++|.|+.+|   +.+++|++|++++|.+.+ +|. +..  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            389999999975 556776 4  378999999999999999   568999999999997554 888 665  99999999


Q ss_pred             CCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEE
Q 038130          334 GCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLY  413 (526)
Q Consensus       334 ~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  413 (526)
                      +|. +..+|.   .+++|+ .|++++|.+ ..+|.    .+++|+.|+++.|    .... .+.    +.   ++|+.|+
T Consensus       129 ~N~-l~~lp~---~l~~L~-~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N----~L~~-lp~----l~---~~L~~L~  186 (571)
T 3cvr_A          129 NNQ-LTMLPE---LPALLE-YINADNNQL-TMLPE----LPTSLEVLSVRNN----QLTF-LPE----LP---ESLEALD  186 (571)
T ss_dssp             SSC-CSCCCC---CCTTCC-EEECCSSCC-SCCCC----CCTTCCEEECCSS----CCSC-CCC----CC---TTCCEEE
T ss_pred             CCc-CCCCCC---cCcccc-EEeCCCCcc-CcCCC----cCCCcCEEECCCC----CCCC-cch----hh---CCCCEEE
Confidence            975 455777   678888 999999999 55776    3489999999544    2111 111    11   5999999


Q ss_pred             ccCCCCCCCCCccCCCCcccccHHH-hccCCCCEecccCCccCCcCCC
Q 038130          414 LNYCGILELPDSLEKNNFERIPESI-IQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       414 L~~~~~~~lp~~l~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                      |++|.++.+|.         ++..+ ...+.|+.|++++| .+..+|.
T Consensus       187 Ls~N~L~~lp~---------~~~~L~~~~~~L~~L~Ls~N-~l~~lp~  224 (571)
T 3cvr_A          187 VSTNLLESLPA---------VPVRNHHSEETEIFFRCREN-RITHIPE  224 (571)
T ss_dssp             CCSSCCSSCCC---------CC--------CCEEEECCSS-CCCCCCG
T ss_pred             CcCCCCCchhh---------HHHhhhcccccceEEecCCC-cceecCH
Confidence            99998877763         12111 22344599999998 4556664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.50  E-value=1.2e-13  Score=146.21  Aligned_cols=172  Identities=23%  Similarity=0.271  Sum_probs=135.1

Q ss_pred             cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      ...++.|++++| .+..++. +..+++|+.|+|++|. +..++.+..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus        42 L~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence            357888999985 4666764 8889999999999975 555666899999999999999999877 69999999999999


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD  389 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  389 (526)
                      +|.+. .+| .+..+++|+.|+|++|.. ..+ ..+..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.|    
T Consensus       118 ~N~l~-~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~-~L~Ls~N~l-~~~~~-l~~l-~~L~~L~Ls~N----  185 (605)
T 1m9s_A          118 HNGIS-DIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLD-TLSLEDNQI-SDIVP-LAGL-TKLQNLYLSKN----  185 (605)
T ss_dssp             TSCCC-CCG-GGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----
T ss_pred             CCCCC-CCc-cccCCCccCEEECCCCcc-CCc-hhhcccCCCC-EEECcCCcC-CCchh-hccC-CCCCEEECcCC----
Confidence            98754 454 488999999999999754 444 5688999999 999999999 44444 5555 99999999543    


Q ss_pred             CCCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130          390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELP  423 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp  423 (526)
                      .....     ..+..+. +|+.|+|++|.+...|
T Consensus       186 ~i~~l-----~~l~~l~-~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          186 HISDL-----RALAGLK-NLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCCBC-----GGGTTCT-TCSEEECCSEEEECCC
T ss_pred             CCCCC-----hHHccCC-CCCEEEccCCcCcCCc
Confidence            22111     1233444 9999999999887755

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=3.9e-13  Score=124.66  Aligned_cols=151  Identities=21%  Similarity=0.227  Sum_probs=104.5

Q ss_pred             CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccC-cCCCCCCCCcEEeecC
Q 038130          257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG  334 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~  334 (526)
                      -+.++.+++ .+..+|.- -..+|++|++++|.+..+ |..++.+++|++|+|++|.+ ..+| ..+..+++|++|++++
T Consensus        21 ~~~v~c~~~-~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTS-CCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCC-CcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            466788774 46667751 127789999999988866 56688889999999998875 4454 4467889999999988


Q ss_pred             CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130          335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL  414 (526)
Q Consensus       335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  414 (526)
                      |......+..+..+++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.|    .....   ....+..+. +|+.|++
T Consensus        98 N~l~~l~~~~~~~l~~L~-~L~Ls~N~l-~~lp~~~~~l-~~L~~L~L~~N----~l~~~---~~~~~~~l~-~L~~L~l  166 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLK-ELFMCCNKL-TELPRGIERL-THLTHLALDQN----QLKSI---PHGAFDRLS-SLTHAYL  166 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCC-EEECCSSCC-CSCCTTGGGC-TTCSEEECCSS----CCCCC---CTTTTTTCT-TCCEEEC
T ss_pred             CcCCccChhHhCcchhhC-eEeccCCcc-cccCcccccC-CCCCEEECCCC----cCCcc---CHHHHhCCC-CCCEEEe
Confidence            755444344578888888 899999988 6888877666 88888888443    11111   111122333 7778887


Q ss_pred             cCCCCCC
Q 038130          415 NYCGILE  421 (526)
Q Consensus       415 ~~~~~~~  421 (526)
                      ++|.+..
T Consensus       167 ~~N~~~c  173 (229)
T 3e6j_A          167 FGNPWDC  173 (229)
T ss_dssp             TTSCBCT
T ss_pred             eCCCccC
Confidence            7776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=3.9e-13  Score=123.85  Aligned_cols=151  Identities=18%  Similarity=0.169  Sum_probs=108.7

Q ss_pred             cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc--cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS--SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      ++++++++. ++.+|. +.  ..+++|++++|.++.++.  .++.+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus        14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            688998854 666775 32  346899999999997743  478999999999999886665666789999999999999


Q ss_pred             CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130          335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL  414 (526)
Q Consensus       335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  414 (526)
                      |......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++.|    .   .....+..+..+. +|+.|++
T Consensus        91 N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N----~---l~~~~~~~~~~l~-~L~~L~L  160 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLK-TLMLRSNRITCVGNDSFIGL-SSVRLLSLYDN----Q---ITTVAPGAFDTLH-SLSTLNL  160 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCC-EEECTTSCCCCBCTTSSTTC-TTCSEEECTTS----C---CCCBCTTTTTTCT-TCCEEEC
T ss_pred             CccCccCHhHhcCCcCCC-EEECCCCcCCeECHhHcCCC-ccCCEEECCCC----c---CCEECHHHhcCCC-CCCEEEe
Confidence            766555555688899999 99999999955445556555 88888888444    2   1111112233333 7888888


Q ss_pred             cCCCCCC
Q 038130          415 NYCGILE  421 (526)
Q Consensus       415 ~~~~~~~  421 (526)
                      ++|.+..
T Consensus       161 ~~N~l~c  167 (220)
T 2v70_A          161 LANPFNC  167 (220)
T ss_dssp             CSCCEEC
T ss_pred             cCcCCcC
Confidence            8887643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=1e-13  Score=131.50  Aligned_cols=167  Identities=18%  Similarity=0.166  Sum_probs=119.0

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCcc
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKR  313 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~  313 (526)
                      ..+++++ ..+..++ .+..+++|++|++++| .+..+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+
T Consensus        22 ~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           22 VKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             HHHHhcC-CCccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence            3444555 3445555 3677889999999986 46677888888899999999999988877 88899999999998874


Q ss_pred             CcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCC
Q 038130          314 LKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMG  393 (526)
Q Consensus       314 ~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  393 (526)
                       ..+|. +.. ++|++|++++|. +..++ .+.++++|+ .|++++|.+ ..++ .+..+ ++|+.|+++.|    ....
T Consensus        98 -~~l~~-~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~-~L~Ls~N~i-~~~~-~l~~l-~~L~~L~L~~N----~i~~  164 (263)
T 1xeu_A           98 -KNLNG-IPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLE-ILSIRNNKL-KSIV-MLGFL-SKLEVLDLHGN----EITN  164 (263)
T ss_dssp             -SCCTT-CCC-SSCCEEECCSSC-CSBSG-GGTTCTTCC-EEECTTSCC-CBCG-GGGGC-TTCCEEECTTS----CCCB
T ss_pred             -CCcCc-ccc-CcccEEEccCCc-cCCCh-hhcCccccc-EEECCCCcC-CCCh-HHccC-CCCCEEECCCC----cCcc
Confidence             44665 333 889999999864 44454 588888888 999999988 5555 45555 88888888443    2111


Q ss_pred             CCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130          394 LSSPITLPLDGLHTTLTSLYLNYCGILELP  423 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp  423 (526)
                      .     ..+..+. +|+.|++++|.+...|
T Consensus       165 ~-----~~l~~l~-~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          165 T-----GGLTRLK-KVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C-----TTSTTCC-CCCEEEEEEEEEECCC
T ss_pred             h-----HHhccCC-CCCEEeCCCCcccCCc
Confidence            1     1133333 8888888888766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=7.8e-15  Score=146.16  Aligned_cols=231  Identities=14%  Similarity=0.115  Sum_probs=156.2

Q ss_pred             EEeeCCCCCCCcCCCCC-CCCcccEEEecccCCcccC-----ccccCCC-CCCEEeccCCccCcccCcCCCCC-----CC
Q 038130          259 KLNLLGCSKLKRLPEFS-SSGKIEEIWLDGTAIEELP-----SSIGCLS-RLLYLYLSDCKRLKSLPSSLSQL-----KS  326 (526)
Q Consensus       259 ~L~l~~~~~~~~lp~~~-~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l-----~~  326 (526)
                      +++++++.....+|.+. ...+|++|++++|.++..+     ..+..++ +|++|++++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45777776555667644 4455999999999999776     5678888 99999999998666556555554     99


Q ss_pred             CcEEeecCCCCCCcCCCcc----cCc-ccccceeeccccccccccChhhhcc----cCCcceEEcccCCCCCCCCCCCCC
Q 038130          327 LKLLNLHGCSNLQRLPDDF----GNL-EASNSTLYAKGTAAKREVPSSIVGS----NNNLYELSLDRSWGGDKQMGLSSP  397 (526)
Q Consensus       327 L~~L~l~~~~~~~~lp~~~----~~l-~~L~~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~  397 (526)
                      |++|++++|......+..+    ..+ ++|+ .|++++|.+....+..+...    +++|++|+++.|    ... ..+.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~-~~~~  155 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTIT-VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN----DLG-IKSS  155 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCC-EEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS----CGG-GSCH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCcc-EEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC----cCC-HHHH
Confidence            9999999987554444433    334 7899 99999999944444343322    369999999544    211 1110


Q ss_pred             ccc--CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCCEecccCCccCCc-----CCC----ccccc
Q 038130          398 ITL--PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCERLQS-----LPK----LPFNL  465 (526)
Q Consensus       398 ~~~--~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~-----lp~----~~~~L  465 (526)
                      ...  .+....++|++|++++|.+++.       ....+...+..+ ++|+.|+|++|. ++.     ++.    ..++|
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchh-------hHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCc
Confidence            000  0122334999999999987552       122333455566 599999999995 444     343    23589


Q ss_pred             ccccccccccccc---------CCCCCCCCEEeccCCC--CCCHHHHHHH
Q 038130          466 QGIFAHHCTALSS---------ISYKSSTQLFDLSDNF--KLDRNAVRII  504 (526)
Q Consensus       466 ~~L~l~~c~~L~~---------l~~~~~L~~L~l~~c~--~l~~~~~~~~  504 (526)
                      +.|+++++. +..         +..+++|+.|++++|.  .+.......+
T Consensus       228 ~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          228 VSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             CEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             eEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            999999874 222         2357899999999996  4555554443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.44  E-value=3.9e-16  Score=180.53  Aligned_cols=150  Identities=11%  Similarity=0.020  Sum_probs=118.4

Q ss_pred             ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhCC
Q 038130           19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYG   98 (526)
Q Consensus        19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~~   98 (526)
                      .+..+|+|++|...++.          ..+++   ++++++|+++|+|+|||++++|.+++.+.  .+|...++......
T Consensus       285 ~l~~~~a~~l~~~~~~~----------~~~~~---~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~  349 (1249)
T 3sfz_A          285 GLGREKGLEILSLFVNM----------KKEDL---PAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ  349 (1249)
T ss_dssp             SCCHHHHHHHHHHHHTS----------CSTTC---CTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHhhCC----------ChhhC---cHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence            37889999999887632          11233   78899999999999999999999998765  46888887663221


Q ss_pred             ---------------CeEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHh
Q 038130           99 ---------------QIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLD  163 (526)
Q Consensus        99 ---------------~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~  163 (526)
                                     ..++.+||+.||.+.| .||.||++||+++.|      +++.++.+|.+++          +.+.
T Consensus       350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-~~~~~l~~f~~~~~i------~~~~~~~~~~~~~----------~~~~  412 (1249)
T 3sfz_A          350 FKRIRKSSSYDYEALDEAMSISVEMLREDIK-DYYTDLSILQKDVKV------PTKVLCVLWDLET----------EEVE  412 (1249)
T ss_dssp             CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTH-HHHHHGGGSCTTCCE------EHHHHHHHHTCCH----------HHHH
T ss_pred             hhhcccccccchHHHHHHHHHHHHhCCHHHH-HHHHHhCccCCCCee------CHHHHHHHhCCCH----------HHHH
Confidence                           1134459999999999 899999999999999      7778999998773          2233


Q ss_pred             hCCCCcccchHHHhhccceeeecCC---eEEechhHHHHHHHHHHhh
Q 038130          164 ACGFFAGIGLPVLVNRCLITVSHSN---TITMHDSLGDMEREIVQKE  207 (526)
Q Consensus       164 ~~~~~~~~~~~~Li~~sl~~~~~~~---~~~mhdl~~dla~~i~~~e  207 (526)
                      ++       +++|+++||++....+   .|+|||++|++++..+.++
T Consensus       413 ~~-------l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          413 DI-------LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HH-------HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HH-------HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            33       8999999999977655   4999999999999886554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=3.2e-14  Score=151.37  Aligned_cols=81  Identities=12%  Similarity=0.030  Sum_probs=33.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCc----CCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKR----LPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL  306 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~----lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L  306 (526)
                      ++++.|++++|. +..+|..+..+++|+.|+++++.....    ...+..+.+|+.|+++++....+|..+..+++|++|
T Consensus       220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred             CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence            444555555432 222344444444444444443211100    112334444444444444333444444445555555


Q ss_pred             eccCCc
Q 038130          307 YLSDCK  312 (526)
Q Consensus       307 ~L~~~~  312 (526)
                      ++++|.
T Consensus       299 ~Ls~~~  304 (592)
T 3ogk_B          299 DLLYAL  304 (592)
T ss_dssp             EETTCC
T ss_pred             ecCCCc
Confidence            555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=4.8e-14  Score=152.80  Aligned_cols=123  Identities=23%  Similarity=0.307  Sum_probs=95.0

Q ss_pred             CCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCC
Q 038130          246 SLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQL  324 (526)
Q Consensus       246 ~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l  324 (526)
                      ..+..+..++.|++|+|++|. +..+| .+..+.+|++|+|++|.|+.+|..|++|++|++|+|++|.+. .+|..++.|
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            456667788889999998876 44666 467888889999998888888888888999999999988754 788888888


Q ss_pred             CCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhc
Q 038130          325 KSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG  372 (526)
Q Consensus       325 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~  372 (526)
                      ++|++|+|++|. ++.+|..|++|++|+ .|++++|.+.+.+|..+..
T Consensus       293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQ-FLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             TTCSEEECCSSC-CCCCCSSTTSCTTCC-CEECTTSCCCSHHHHHHHH
T ss_pred             CCCCEEECCCCC-CCccChhhhcCCCcc-EEeCCCCccCCCChHHHhh
Confidence            999999998864 567888888888888 8999998886666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=2.9e-13  Score=119.01  Aligned_cols=133  Identities=24%  Similarity=0.258  Sum_probs=83.8

Q ss_pred             CcceEEEeccCCCC-CCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSL-NSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L  308 (526)
                      ..++.|++++|... ..+|..+..+++|++|++++|. +..++.+..+++|++|++++|.+.. +|..++.+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            45677777775433 3666666677777777777765 4444556677777777777777765 5655666777777777


Q ss_pred             cCCccCcccC--cCCCCCCCCcEEeecCCCCCCcCCC----cccCcccccceeeccccccccccCh
Q 038130          309 SDCKRLKSLP--SSLSQLKSLKLLNLHGCSNLQRLPD----DFGNLEASNSTLYAKGTAAKREVPS  368 (526)
Q Consensus       309 ~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~~L~l~~~~~~~~~~~  368 (526)
                      ++|.+ ..+|  ..+..+++|++|++++|. +..+|.    .+..+++|+ .|++++|.+ ..+|.
T Consensus       103 s~N~l-~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~~n~~-~~~~~  164 (168)
T 2ell_A          103 SGNKL-KDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLT-YLDGYDRED-QEAPD  164 (168)
T ss_dssp             BSSSC-CSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCC-EETTEETTS-CBCCS
T ss_pred             cCCcc-CcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCc-EecCCCCCh-hhccc
Confidence            77653 3333  456667777777777654 333443    566666666 666666665 44443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.42  E-value=4.9e-14  Score=149.96  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=73.9

Q ss_pred             ccCCCcEEeeCCCCCCCcCC-CCCC-C-CcccEEEecccC-Cc--ccCccccCCCCCCEEeccCCccCcc----cCcCCC
Q 038130          253 HLEFLKKLNLLGCSKLKRLP-EFSS-S-GKIEEIWLDGTA-IE--ELPSSIGCLSRLLYLYLSDCKRLKS----LPSSLS  322 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp-~~~~-l-~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~  322 (526)
                      .+++|++|++++|......+ .+.. + .+|++|+++++. +.  .++..+.++++|++|+|++|.+...    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56777777777764222111 1322 2 237777777554 22  2333345677777777777754322    222334


Q ss_pred             CCCCCcEEeecCCCCC----CcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130          323 QLKSLKLLNLHGCSNL----QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       323 ~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      .+++|++|++++|...    ..++..+.++++|+ .|++++|.+ ..++..+... ++|+.|.+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~-~~l~~~~~~~-~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV-SVKVGDFEI-LELVGFFKAA-ANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC-EEECSSCBG-GGGHHHHHHC-TTCCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc-EEeccCccH-HHHHHHHhhh-hHHHhhccc
Confidence            5677777777765443    22333445666777 777777776 4466555555 777777774

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=7.6e-13  Score=131.63  Aligned_cols=155  Identities=17%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             CcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130          231 NTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL  306 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L  306 (526)
                      ..++.|++++|......+..+. .+++|++|+|++|. +..++ . +..+++|++|+|++|.++.+|. .+..+++|++|
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            3578999999654333344455 89999999999976 44544 3 8999999999999999998876 58999999999


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcc----cCcccccceeeccccccccccChhhhcccCC--cceE
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF----GNLEASNSTLYAKGTAAKREVPSSIVGSNNN--LYEL  380 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~--L~~L  380 (526)
                      +|++|.+....|..+..+++|++|++++|. +..+|..+    ..+++|+ .|++++|.+ ..+|......++.  |+.|
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM-LLDLSSNKL-KKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC-EEECCSSCC-CCCCHHHHHHSCHHHHTTE
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC-EEECCCCCC-CccCHHHhhhccHhhcceE
Confidence            999999777778889999999999999964 55677654    6789999 999999999 6677543333365  4889


Q ss_pred             EcccCCCCC
Q 038130          381 SLDRSWGGD  389 (526)
Q Consensus       381 ~l~~~~~~~  389 (526)
                      ++..|...|
T Consensus       195 ~l~~N~~~C  203 (361)
T 2xot_A          195 YLHNNPLEC  203 (361)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCccC
Confidence            997774444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=1.5e-12  Score=117.11  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  310 (526)
                      +++++++ +.++.+|..+.  .+|++|++++|......+.  +..+++|++|++++|.++.+ |..++.+++|++|+|++
T Consensus        11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5666666 34566665443  3677777777643332232  56667777777777777655 55667777777777777


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE  365 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~  365 (526)
                      |.+.+..|..+..+++|++|++++|...+..|..+..+++|+ .|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC-EEEeCCCCccCc
Confidence            665555555566677777777777655555566666676777 777777666433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=2.6e-15  Score=157.77  Aligned_cols=179  Identities=18%  Similarity=0.159  Sum_probs=101.4

Q ss_pred             ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccC--------------CcccCccccCCCCCCEEe-ccCCccCcc
Q 038130          253 HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTA--------------IEELPSSIGCLSRLLYLY-LSDCKRLKS  316 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~~~~~  316 (526)
                      .+++|+.|+|++|. ++.+|. ++.+.+|+.|+++++.              ....|..++.+++|+.|+ ++.|. ...
T Consensus       347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~  424 (567)
T 1dce_A          347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD  424 (567)
T ss_dssp             TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred             cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence            35566666666543 344553 5555666666655442              224455566666777666 44332 111


Q ss_pred             cCc------CCCC--CCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130          317 LPS------SLSQ--LKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG  388 (526)
Q Consensus       317 lp~------~i~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  388 (526)
                      ++.      .+..  ...|++|++++| .+..+|. ++++++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.|   
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~-~L~Ls~N~l-~~lp~~~~~l-~~L~~L~Ls~N---  496 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVT-HLDLSHNRL-RALPPALAAL-RCLEVLQASDN---  496 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCC-EEECCSSCC-CCCCGGGGGC-TTCCEEECCSS---
T ss_pred             hhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCc-EeecCcccc-cccchhhhcC-CCCCEEECCCC---
Confidence            111      0100  124777777775 3445665 77777777 777777777 4777766666 77777777443   


Q ss_pred             CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                       ...   . .+ .+..+. +|+.|+|++|.+++++          .|..++.+++|+.|+|++|+ +..+|
T Consensus       497 -~l~---~-lp-~l~~l~-~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          497 -ALE---N-VD-GVANLP-RLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             -CCC---C-CG-GGTTCS-SCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             -CCC---C-Cc-ccCCCC-CCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCc-CCCCc
Confidence             211   1 11 233443 7888888877654421          15677778888888888875 33343

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=2.3e-13  Score=129.04  Aligned_cols=169  Identities=21%  Similarity=0.202  Sum_probs=131.1

Q ss_pred             ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      .+..+..++++++. +..++.+..+.+|++|++++|.++.+| .++.+++|++|++++|.+ ..+|. +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCC-cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence            36677788888854 666777888999999999999999998 799999999999999874 45665 899999999999


Q ss_pred             cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEE
Q 038130          333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL  412 (526)
Q Consensus       333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  412 (526)
                      ++|. +..+|... . ++|+ .|++++|.+ ..++ .+..+ ++|+.|+++.|    .....    + .+..+ ++|+.|
T Consensus        93 ~~N~-l~~l~~~~-~-~~L~-~L~L~~N~l-~~~~-~l~~l-~~L~~L~Ls~N----~i~~~----~-~l~~l-~~L~~L  155 (263)
T 1xeu_A           93 NRNR-LKNLNGIP-S-ACLS-RLFLDNNEL-RDTD-SLIHL-KNLEILSIRNN----KLKSI----V-MLGFL-SKLEVL  155 (263)
T ss_dssp             CSSC-CSCCTTCC-C-SSCC-EEECCSSCC-SBSG-GGTTC-TTCCEEECTTS----CCCBC----G-GGGGC-TTCCEE
T ss_pred             CCCc-cCCcCccc-c-Cccc-EEEccCCcc-CCCh-hhcCc-ccccEEECCCC----cCCCC----h-HHccC-CCCCEE
Confidence            9965 45566533 3 7899 999999999 5555 45555 99999999554    21111    1 23344 499999


Q ss_pred             EccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130          413 YLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL  455 (526)
Q Consensus       413 ~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l  455 (526)
                      ++++|.++++             ..+..+++|+.|++++|+..
T Consensus       156 ~L~~N~i~~~-------------~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          156 DLHGNEITNT-------------GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECTTSCCCBC-------------TTSTTCCCCCEEEEEEEEEE
T ss_pred             ECCCCcCcch-------------HHhccCCCCCEEeCCCCccc
Confidence            9999977652             35678899999999998643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=9.8e-14  Score=150.38  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCC----CCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGC----SKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~----~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~  305 (526)
                      ...+.|++.++ .+...+..+.....|+.+.+...    +.+...+. +..+..|+.|+|++|.+..+|..+..+++|++
T Consensus       173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            34567777763 33334443333333444333321    11222333 77888899999999999999988889999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |+|++|.+. .+|..++.|++|++|+|++|. +..+|..+++|++|+ .|++++|.+ +.+|..+..+ ++|+.|+++.|
T Consensus       252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N~l-~~lp~~~~~l-~~L~~L~L~~N  326 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK-YFYFFDNMV-TTLPWEFGNL-CNLQFLGVEGN  326 (727)
T ss_dssp             CBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS-EEECCSSCC-CCCCSSTTSC-TTCCCEECTTS
T ss_pred             EEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC-EEECCCCCC-CccChhhhcC-CCccEEeCCCC
Confidence            999998755 888888899999999999866 447888899999999 999999988 6888887666 88888888443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=4.1e-12  Score=114.28  Aligned_cols=123  Identities=20%  Similarity=0.235  Sum_probs=96.7

Q ss_pred             cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc--ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS--IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      ++++++++. ++.+|. +..  ++++|++++|.++.++..  ++.+++|++|+|++|.+.+..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            788998854 577775 333  889999999999988764  88999999999999987777788889999999999999


Q ss_pred             CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++.|
T Consensus        88 N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N  136 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLK-TLNLYDNQISCVMPGSFEHL-NSLTSLNLASN  136 (192)
T ss_dssp             CCCCEECSSSSTTCTTCC-EEECCSSCCCEECTTSSTTC-TTCCEEECTTC
T ss_pred             CcCCccCHHHhcCCCCCC-EEECCCCcCCeeCHHHhhcC-CCCCEEEeCCC
Confidence            776665666688899999 99999998855556555554 66777766544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.36  E-value=1.4e-12  Score=114.58  Aligned_cols=79  Identities=23%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             CCCcEEeeCCCCCC-CcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          255 EFLKKLNLLGCSKL-KRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       255 ~~L~~L~l~~~~~~-~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      ++|++|++++|... ..+|. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+...+|..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            34444444444321 13332 23444444444444444433 33444444444444444333223333333444444444


Q ss_pred             cC
Q 038130          333 HG  334 (526)
Q Consensus       333 ~~  334 (526)
                      ++
T Consensus       103 s~  104 (168)
T 2ell_A          103 SG  104 (168)
T ss_dssp             BS
T ss_pred             cC
Confidence            44

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.35  E-value=4.2e-13  Score=115.62  Aligned_cols=111  Identities=18%  Similarity=0.290  Sum_probs=98.0

Q ss_pred             CCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHH
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDE   86 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~   86 (526)
                      ....+|||||||+++| .+-|..++..+|..+|+.+|.|+ ++.+|+.+...|.+...+.-.+ +++...++.+.|+..|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4568999999999999 55799999999999999999999 8999999999999999999999 6667888999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEEeeccchhhhhccccH
Q 038130           87 LLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSF  120 (526)
Q Consensus        87 w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y  120 (526)
                      |..++++.......|+|+.|+.-|+++++|...|
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~  128 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTM  128 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCC
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccH
Confidence            9999987766667899999999999998755544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.35  E-value=9.6e-13  Score=113.19  Aligned_cols=123  Identities=19%  Similarity=0.112  Sum_probs=66.3

Q ss_pred             CCCcEEeeCCCCCC-CcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          255 EFLKKLNLLGCSKL-KRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       255 ~~L~~L~l~~~~~~-~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      ++|+.|++++|... ..+|. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45555555555432 23443 45555566666665555555 44556666666666665544445554445666666666


Q ss_pred             cCCCCCCcC--CCcccCcccccceeeccccccccccCh----hhhcccCCcceEEc
Q 038130          333 HGCSNLQRL--PDDFGNLEASNSTLYAKGTAAKREVPS----SIVGSNNNLYELSL  382 (526)
Q Consensus       333 ~~~~~~~~l--p~~~~~l~~L~~~L~l~~~~~~~~~~~----~l~~~~~~L~~L~l  382 (526)
                      ++|.. ..+  |..++.+++|+ .|++++|.+ ..++.    .+..+ ++|+.|++
T Consensus        96 s~N~i-~~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l-~~L~~L~l  147 (149)
T 2je0_A           96 SGNKI-KDLSTIEPLKKLENLK-SLDLFNCEV-TNLNDYRENVFKLL-PQLTYLDG  147 (149)
T ss_dssp             TTSCC-CSHHHHGGGGGCTTCC-EEECTTCGG-GGSTTHHHHHHHHC-TTCCEETT
T ss_pred             CCCcC-CChHHHHHHhhCCCCC-EEeCcCCcc-cchHHHHHHHHHHC-CCcccccC
Confidence            66443 322  24556666666 666666666 33333    23333 66666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=8.1e-12  Score=112.37  Aligned_cols=124  Identities=21%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             cEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC
Q 038130          258 KKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~  337 (526)
                      ++++++++ .++.+|.- -..++++|++++|.|+.+|..+..+++|++|++++|.+....|..+..+++|++|++++|..
T Consensus        13 ~~l~~~~~-~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTS-CCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCC-CCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            46666664 35555541 12467777777777777777777778888888887775555555677777888888877655


Q ss_pred             CCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          338 LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       338 ~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      ....|..+.++++|+ .|++++|.+ ..+|...+..+++|+.|++..|
T Consensus        91 ~~i~~~~f~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLR-LLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CBCCTTTTTTCTTCC-EEECCSSCC-CBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeCHHHhCCCCCCC-EEECCCCCC-CeeChhhhhcCccccEEEeCCC
Confidence            444455677777777 777777777 5555543333356666666443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.34  E-value=8.2e-13  Score=113.63  Aligned_cols=126  Identities=22%  Similarity=0.205  Sum_probs=105.3

Q ss_pred             CcceEEEeccCCCC-CCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSL-NSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L  308 (526)
                      ..++.|++++|... ..+|..+..+++|++|++++|. +..++.+..+++|++|++++|.++. +|..++.+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            56899999997654 4888888999999999999985 5555779999999999999999997 8888888999999999


Q ss_pred             cCCccCcc-cCcCCCCCCCCcEEeecCCCCCCcCCC----cccCcccccceeeccc
Q 038130          309 SDCKRLKS-LPSSLSQLKSLKLLNLHGCSNLQRLPD----DFGNLEASNSTLYAKG  359 (526)
Q Consensus       309 ~~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~~L~l~~  359 (526)
                      ++|.+.+. .|..+..+++|++|++++|. +..+|.    .++.+++|+ .|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLT-YLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCC-EETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcc-cccCCC
Confidence            99985542 34778999999999999975 455554    688889999 888753

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.34  E-value=6.5e-16  Score=166.23  Aligned_cols=138  Identities=7%  Similarity=0.025  Sum_probs=104.4

Q ss_pred             ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhh-cHHHHHHHHHHHhhC
Q 038130           19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSW-CLDELLKIVECRTNY   97 (526)
Q Consensus        19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~-~~~~w~~i~~~~~~~   97 (526)
                      .++.+|+|++|..++ +    ..        .   +++.++|   |+|+|||++++|+.++.+. ..++|....   ...
T Consensus       297 ~LS~eEA~eLF~~~~-g----~~--------~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~---~~~  354 (1221)
T 1vt4_I          297 TLTPDEVKSLLLKYL-D----CR--------P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN---CDK  354 (1221)
T ss_dssp             CCCHHHHHHHHHHHH-C----CC--------T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS---CHH
T ss_pred             CcCHHHHHHHHHHHc-C----CC--------H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC---hhH
Confidence            578889999998872 1    11        1   4555555   9999999999998888763 567887641   111


Q ss_pred             CCeEEEEEeeccchhh-hhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHhhCCCCcccchHHH
Q 038130           98 GQIVVAVCYRVEPSHV-RKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVL  176 (526)
Q Consensus        98 ~~~il~~sY~~Lp~~l-k~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~~~~~~~~~~~~~L  176 (526)
                      ...++..||+.||++. | +||+||++||+++.|      +.+.++.+|+|+|.         +.+..+       +++|
T Consensus       355 I~aaLelSYd~Lp~eelK-~cFL~LAIFPed~~I------~~elLa~LW~aeGe---------edAe~~-------L~eL  411 (1221)
T 1vt4_I          355 LTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHI------PTILLSLIWFDVIK---------SDVMVV-------VNKL  411 (1221)
T ss_dssp             HHHHHHHHHHHSCTTHHH-HHHHHTTSSCTTSCE------EHHHHHHHHCSSCS---------HHHHHH-------HHHH
T ss_pred             HHHHHHHHHHhCCHHHHH-HHHHHHhCCCCCCCC------CHHHHHHHhcCCCH---------HHHHHH-------HHHH
Confidence            1124556999999999 8 899999999999999      77788999999971         123333       8999


Q ss_pred             hhccceeeec-CCeEEechhHHHHHH
Q 038130          177 VNRCLITVSH-SNTITMHDSLGDMER  201 (526)
Q Consensus       177 i~~sl~~~~~-~~~~~mhdl~~dla~  201 (526)
                      +++||++... .+.|+|||++++++.
T Consensus       412 vdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          412 HKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            9999999763 568999999999763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=4e-12  Score=112.63  Aligned_cols=125  Identities=18%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCC-cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCC-CCCCCCc
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSG-KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLK  328 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~l~~L~  328 (526)
                      +.++.+|++|++++|. +..+|.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.+. .+|..+ ..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence            3446677777777754 44556555554 677777777777766 45677777777777776643 444433 6677777


Q ss_pred             EEeecCCCCCCcCCC--cccCcccccceeeccccccccccChh----hhcccCCcceEEc
Q 038130          329 LLNLHGCSNLQRLPD--DFGNLEASNSTLYAKGTAAKREVPSS----IVGSNNNLYELSL  382 (526)
Q Consensus       329 ~L~l~~~~~~~~lp~--~~~~l~~L~~~L~l~~~~~~~~~~~~----l~~~~~~L~~L~l  382 (526)
                      +|++++|. ++.+|.  .+..+++|+ .|++++|.+ ..+|..    +..+ ++|+.|++
T Consensus        92 ~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~i-~~~~~~~~~~~~~l-~~L~~Ld~  147 (176)
T 1a9n_A           92 ELILTNNS-LVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKV-PQVRVLDF  147 (176)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHC-TTCSEETT
T ss_pred             EEECCCCc-CCcchhhHhhhcCCCCC-EEEecCCCC-CCcHhHHHHHHHHC-CccceeCC
Confidence            77777754 355554  566677777 777777776 455553    3333 55555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.30  E-value=5.5e-13  Score=141.85  Aligned_cols=13  Identities=38%  Similarity=0.695  Sum_probs=8.0

Q ss_pred             CcccEEEccCCCC
Q 038130          407 TTLTSLYLNYCGI  419 (526)
Q Consensus       407 ~~L~~L~L~~~~~  419 (526)
                      ++|++|++++|.+
T Consensus       289 ~~L~~L~L~~~~l  301 (594)
T 2p1m_B          289 SRLTTLNLSYATV  301 (594)
T ss_dssp             TTCCEEECTTCCC
T ss_pred             CCCCEEEccCCCC
Confidence            3666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.28  E-value=3.2e-13  Score=143.65  Aligned_cols=62  Identities=11%  Similarity=0.073  Sum_probs=40.1

Q ss_pred             ccCCCCEeccc-----CCccCCcCCC---------cccccccccccccccccc-----CC-CCCCCCEEeccCCCCCCHH
Q 038130          440 QLSRLVVLNLN-----YCERLQSLPK---------LPFNLQGIFAHHCTALSS-----IS-YKSSTQLFDLSDNFKLDRN  499 (526)
Q Consensus       440 ~l~~L~~L~L~-----~~~~l~~lp~---------~~~~L~~L~l~~c~~L~~-----l~-~~~~L~~L~l~~c~~l~~~  499 (526)
                      .+++|+.|+++     +|..++..|.         ..++|+.|++++  .+..     +. .+++|+.|++++|. ++..
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~  471 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL  471 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence            57888888888     4556664442         135788888865  2222     11 27889999998886 5666


Q ss_pred             HHHHH
Q 038130          500 AVRII  504 (526)
Q Consensus       500 ~~~~~  504 (526)
                      ....+
T Consensus       472 ~~~~l  476 (594)
T 2p1m_B          472 GMHHV  476 (594)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.28  E-value=2.6e-11  Score=109.04  Aligned_cols=124  Identities=29%  Similarity=0.370  Sum_probs=103.1

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDC  311 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~  311 (526)
                      +++++++ +.+..+|..+  .++|++|++++|. +..+| .+..+.+|++|++++|.|+.++. .|.++++|++|+|++|
T Consensus        13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5788887 5677888765  3689999999975 55676 48899999999999999998764 5899999999999999


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccc
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAK  363 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~  363 (526)
                      .+....|..+..+++|++|++++|.. ..+|. .+..+++|+ .|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALS-HLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCC-EEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCcccc-EEEeCCCCee
Confidence            87766667799999999999999765 45554 588999999 9999998773

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=1.3e-11  Score=129.56  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130          257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS  336 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~  336 (526)
                      |++|++++|. ++.+|.+..+.+|++|+|++|.++.+|..++++++|++|+|++|.+. .+| .++.+++|++|++++|.
T Consensus       443 L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          443 VRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             CSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             ceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCC
Confidence            4555555542 33344455555555555555555555555555555555555555432 244 45555555555555543


Q ss_pred             CCCcC-CCcccCcccccceeecccccc
Q 038130          337 NLQRL-PDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       337 ~~~~l-p~~~~~l~~L~~~L~l~~~~~  362 (526)
                      ..+.. |..++++++|+ .|++++|.+
T Consensus       520 l~~~~~p~~l~~l~~L~-~L~L~~N~l  545 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLV-LLNLQGNSL  545 (567)
T ss_dssp             CCSSSTTGGGGGCTTCC-EEECTTSGG
T ss_pred             CCCCCCcHHHhcCCCCC-EEEecCCcC
Confidence            33222 45555555555 555555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=6.3e-11  Score=104.94  Aligned_cols=128  Identities=23%  Similarity=0.329  Sum_probs=89.2

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEecc
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLS  309 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~  309 (526)
                      .+.+++++ ..+..+|..+  .++|++|++++|. +..++.  +..+.+|++|++++|.++.+|.. ++.+++|++|+++
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            35677766 4566677544  3678888888865 444443  67788888888888888877654 5788888888888


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCc-ccCcccccceeecccccccccc
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREV  366 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~  366 (526)
                      +|.+.+..+..+..+++|++|++++|.. ..+|.. +..+++|+ .|++++|.+....
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQ-KIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCC-EEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccC-EEEecCCCeeccC
Confidence            8775544444467788888888888644 445543 57777888 8888888774443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.24  E-value=1.5e-11  Score=108.89  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=106.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccC-CCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccc-cCCCCCCEEec
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLE-FLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSI-GCLSRLLYLYL  308 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L  308 (526)
                      .+++.|++++| .+..+|. +..+. +|++|++++|. +..++.+..+++|++|++++|.++.+|..+ +.+++|++|++
T Consensus        19 ~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            57899999996 5556776 44455 99999999975 555688999999999999999999998765 99999999999


Q ss_pred             cCCccCcccCc--CCCCCCCCcEEeecCCCCCCcCCCc----ccCcccccceeecccccc
Q 038130          309 SDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRLPDD----FGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       309 ~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~~L~l~~~~~  362 (526)
                      ++|.+ +.+|.  .+..+++|++|++++|.. ..+|..    ++.+++|+ .|++++|..
T Consensus        96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~-~Ld~~~n~~  152 (176)
T 1a9n_A           96 TNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR-VLDFQKVKL  152 (176)
T ss_dssp             CSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS-EETTEECCH
T ss_pred             CCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccc-eeCCCcCCH
Confidence            99974 66776  788999999999999754 567764    88999999 999999876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=2.3e-10  Score=101.32  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130          257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~  335 (526)
                      .+.++++++. +..+|. ....+|++|++++|.++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~-l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSC-CSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCC-CccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3566666643 444553 1124667777777776665543 466677777777766544333333566667777777665


Q ss_pred             CCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130          336 SNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL  382 (526)
Q Consensus       336 ~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l  382 (526)
                      ......+..+.++++|+ .|++++|.+ ..+|..++..+++|+.|++
T Consensus        87 ~l~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLK-ELALDTNQL-KSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             CCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEEC
T ss_pred             CccccCHHHhhCCcccC-EEECcCCcc-eEeCHHHhcCCcccCEEEe
Confidence            44333333456666666 666666666 4444443222244444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=2.2e-13  Score=123.36  Aligned_cols=142  Identities=17%  Similarity=0.235  Sum_probs=102.9

Q ss_pred             eEEEeccC-CCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130          234 VILNLSEY-VSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK  312 (526)
Q Consensus       234 ~~L~l~~~-~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~  312 (526)
                      +...+.+. ..+..+|..+..+++|++|++++|. +..+|.+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus        26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             heeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            34444432 2344555588889999999999875 555777888888999999999998888888888899999999887


Q ss_pred             cCcccCcCCCCCCCCcEEeecCCCCCCcCC--CcccCcccccceeeccccccccccChh----------hhcccCCcceE
Q 038130          313 RLKSLPSSLSQLKSLKLLNLHGCSNLQRLP--DDFGNLEASNSTLYAKGTAAKREVPSS----------IVGSNNNLYEL  380 (526)
Q Consensus       313 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~~L~l~~~~~~~~~~~~----------l~~~~~~L~~L  380 (526)
                      +. .+| .+..+++|++|++++|. +..+|  ..+..+++|+ .|++++|.+.+..|..          +..+ ++|+.|
T Consensus       105 l~-~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L  179 (198)
T 1ds9_A          105 IA-SLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRL-PNLKKL  179 (198)
T ss_dssp             CC-CHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEE
T ss_pred             CC-cCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhC-CCcEEE
Confidence            44 466 47788889999998864 34443  3577888888 8999888875444431          3333 666666


Q ss_pred             E
Q 038130          381 S  381 (526)
Q Consensus       381 ~  381 (526)
                      +
T Consensus       180 d  180 (198)
T 1ds9_A          180 D  180 (198)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.12  E-value=3.1e-13  Score=143.72  Aligned_cols=153  Identities=13%  Similarity=0.011  Sum_probs=113.5

Q ss_pred             CCCcEEE--ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHH
Q 038130           12 NRNDVFL--SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLK   89 (526)
Q Consensus        12 ~~~~~f~--s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~   89 (526)
                      ..|.|-.  .++.+|+|++|...++.     .     .+..   .+.+++|+++|+|+|||+..+|..++...  .+|..
T Consensus       276 ~~~~v~~l~~L~~~ea~~L~~~~~~~-----~-----~~~~---~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~  340 (591)
T 1z6t_A          276 PKYVVPVESSLGKEKGLEILSLFVNM-----K-----KADL---PEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY  340 (591)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHTS-----C-----GGGS---CTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred             CceEeecCCCCCHHHHHHHHHHHhCC-----C-----cccc---cHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence            3344443  68889999999887643     1     1122   67889999999999999988888887654  36888


Q ss_pred             HHHHHhhCCC---------------eEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccch
Q 038130           90 IVECRTNYGQ---------------IVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEER  154 (526)
Q Consensus        90 i~~~~~~~~~---------------~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~  154 (526)
                      +++.......               .++..||+.||.+.| .||.++++||+++.|      +.+.++.+|.++.     
T Consensus       341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~-~~l~~la~f~~~~~i------~~~~l~~l~~~~~-----  408 (591)
T 1z6t_A          341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIK-DYYTDLSILQKDVKV------PTKVLCILWDMET-----  408 (591)
T ss_dssp             HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTH-HHHHHGGGCCTTCCE------EHHHHHHHHTCCH-----
T ss_pred             HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHH-HHHHHccccCCCCcc------CHHHHHHHhccCH-----
Confidence            8776632211               133449999999999 899999999999888      6667777786652     


Q ss_pred             HHHHHHHHhhCCCCcccchHHHhhccceeeecC---CeEEechhHHHHHHHH
Q 038130          155 SDMVLSFLDACGFFAGIGLPVLVNRCLITVSHS---NTITMHDSLGDMEREI  203 (526)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~Li~~sl~~~~~~---~~~~mhdl~~dla~~i  203 (526)
                       +    .+...       +++|+++||++...+   ..|+|||++|++++..
T Consensus       409 -~----~~~~~-------l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          409 -E----EVEDI-------LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             -H----HHHHH-------HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             -H----HHHHH-------HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence             1    12222       899999999986543   2799999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=7.9e-10  Score=97.08  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             CcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          257 LKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      .++++++++. ++.+|. +  ..+|++|+|++|.|+.+ |..++++++|++|+|++|.+.+..|..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3566666643 444553 2  25566666666666655 34466666666666666654333333345666666666666


Q ss_pred             CCCCCcCCCcccCcccccceeecccccc
Q 038130          335 CSNLQRLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      |......+..+.++++|+ .|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~-~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLT-HIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCC-EEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCC-EEEeCCCCC
Confidence            443322222355666666 666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.04  E-value=1.1e-09  Score=96.61  Aligned_cols=99  Identities=23%  Similarity=0.446  Sum_probs=61.9

Q ss_pred             cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEeecC
Q 038130          258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHG  334 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~  334 (526)
                      +.++++++. +..+|. +.  .+|++|+|++|.|+.+ |..++++++|++|+|++|.+. .+|.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            567776643 455554 32  6667777777777755 445677777777777776543 34433 46677777777776


Q ss_pred             CCCCCcCCC-cccCcccccceeecccccc
Q 038130          335 CSNLQRLPD-DFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       335 ~~~~~~lp~-~~~~l~~L~~~L~l~~~~~  362 (526)
                      |.. ..+|. .+.++++|+ .|++++|.+
T Consensus        91 N~l-~~l~~~~~~~l~~L~-~L~L~~N~~  117 (174)
T 2r9u_A           91 NHL-KSIPRGAFDNLKSLT-HIYLYNNPW  117 (174)
T ss_dssp             SCC-CCCCTTTTTTCTTCS-EEECCSSCB
T ss_pred             Ccc-ceeCHHHhccccCCC-EEEeCCCCc
Confidence            543 34444 366677777 777777766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.02  E-value=1.6e-09  Score=95.51  Aligned_cols=101  Identities=24%  Similarity=0.335  Sum_probs=84.1

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD  310 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~  310 (526)
                      .+.+++++ +.+..+|..+.  ++|++|++++|......|. +..+.+|++|+|++|.|+.+|.. ++++++|++|+|++
T Consensus        14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            36888888 56788888664  8999999999865444454 88999999999999999999876 58999999999999


Q ss_pred             CccCcccCc-CCCCCCCCcEEeecCCCC
Q 038130          311 CKRLKSLPS-SLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       311 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~  337 (526)
                      |.+. .+|. .+..+++|++|++++|..
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence            9855 4555 488999999999999754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.99  E-value=3.4e-09  Score=93.03  Aligned_cols=102  Identities=25%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130          233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD  310 (526)
Q Consensus       233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~  310 (526)
                      .+.+++++ +.+..+|..+  .+.|++|++++|......|. +..+.+|++|+|++|.|+.+|.. +..+++|++|+|++
T Consensus        11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45677777 4556677655  36777788877653333343 67777778888887777777665 47777788888877


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~  337 (526)
                      |.+.+..+..+..+++|++|++++|..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            764443334467777788887777643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.98  E-value=7.5e-12  Score=113.17  Aligned_cols=140  Identities=19%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhh
Q 038130          292 ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIV  371 (526)
Q Consensus       292 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~  371 (526)
                      .+|..++.+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+++|+ .|++++|.+ ..+| .+.
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~-~L~L~~N~l-~~l~-~~~  112 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLE-ELWISYNQI-ASLS-GIE  112 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCS-EEEEEEEEC-CCHH-HHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCC-EEECcCCcC-CcCC-ccc
Confidence            33444444455555555544422 244 34444555555554432 224444444444455 555555554 3333 233


Q ss_pred             cccCCcceEEcccCCCCCCCCCCCCCcc-cCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEec
Q 038130          372 GSNNNLYELSLDRSWGGDKQMGLSSPIT-LPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLN  448 (526)
Q Consensus       372 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~  448 (526)
                      .+ ++|+.|+++.|    .   ...... ..+..+ ++|++|++++|.+.+.+..  .+....++ ..+..+++|+.|+
T Consensus       113 ~l-~~L~~L~l~~N----~---i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~--~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          113 KL-VNLRVLYMSNN----K---ITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HH-HHSSEEEESEE----E---CCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHT--TTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cC-CCCCEEECCCC----c---CCchhHHHHHhcC-CCCCEEEecCCcccccccc--ccchHHHHHHHHHhCCCcEEEC
Confidence            33 45555555322    1   000000 001122 3777777777755431000  00001111 2367889999887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1e-08  Score=100.21  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             cccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc-EEEccCCCCCCCCCcc
Q 038130          348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT-SLYLNYCGILELPDSL  426 (526)
Q Consensus       348 l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~lp~~l  426 (526)
                      +++|+ .+++++|.+ ..++...+..+++|+.+.+..|      +...+.  ..+.++. +|+ .+++.+ .++.++   
T Consensus       225 ~~~L~-~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~~n------i~~I~~--~aF~~~~-~L~~~l~l~~-~l~~I~---  289 (329)
T 3sb4_A          225 MPNLV-SLDISKTNA-TTIPDFTFAQKKYLLKIKLPHN------LKTIGQ--RVFSNCG-RLAGTLELPA-SVTAIE---  289 (329)
T ss_dssp             CTTCC-EEECTTBCC-CEECTTTTTTCTTCCEEECCTT------CCEECT--TTTTTCT-TCCEEEEECT-TCCEEC---
T ss_pred             cCCCe-EEECCCCCc-ceecHhhhhCCCCCCEEECCcc------cceehH--HHhhCCh-hccEEEEEcc-cceEEc---
Confidence            55677 888888777 6777776666688888888432      111111  1133333 787 888776 333222   


Q ss_pred             CCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130          427 EKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       427 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                              +..+.++++|+.|++.++ .+..++.
T Consensus       290 --------~~aF~~c~~L~~l~l~~n-~i~~I~~  314 (329)
T 3sb4_A          290 --------FGAFMGCDNLRYVLATGD-KITTLGD  314 (329)
T ss_dssp             --------TTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred             --------hhhhhCCccCCEEEeCCC-ccCccch
Confidence                    245677888888888765 5555654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=1.4e-09  Score=106.55  Aligned_cols=233  Identities=12%  Similarity=0.086  Sum_probs=115.4

Q ss_pred             CcceEEEeccCCCCCCCChhccc-cCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCc-cccC--------C
Q 038130          231 NTLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPS-SIGC--------L  300 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~-~i~~--------L  300 (526)
                      ..++.|.++++-....+ ..+.. +++|++|+|++|........-+.++.++.+.+..+.   +|. .|.+        +
T Consensus        25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEEC
T ss_pred             CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhccccccccccc
Confidence            35677777763111111 12333 677888888886533100001112223444444442   222 2445        7


Q ss_pred             CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc---ccccChhhhcccCCc
Q 038130          301 SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA---KREVPSSIVGSNNNL  377 (526)
Q Consensus       301 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~---~~~~~~~l~~~~~~L  377 (526)
                      ++|+.|++.. .....-+..+..+++|+.|++.++.....-+..|.++..+. .+....+..   ...+....+..+..|
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~-~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI-FIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEE-EECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceE-EecCcchhhhhcccccccccccccccc
Confidence            7788877776 43332334567777788888777544433344565555444 444333110   011111111111222


Q ss_pred             c--------------------------eEEcccCCCCCCCCCCCCCccc-CcccccCcccEEEccCCCCCCCCCccCCCC
Q 038130          378 Y--------------------------ELSLDRSWGGDKQMGLSSPITL-PLDGLHTTLTSLYLNYCGILELPDSLEKNN  430 (526)
Q Consensus       378 ~--------------------------~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~  430 (526)
                      +                          .+.+..+         ...... .+...+++|+.|+|++|.++.+|       
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---------l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-------  242 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK---------LDNADFKLIRDYMPNLVSLDISKTNATTIP-------  242 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC---------CCHHHHHHHHHHCTTCCEEECTTBCCCEEC-------
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeee---------ecHHHHHHHHHhcCCCeEEECCCCCcceec-------
Confidence            2                          2222110         000000 01112458889998887655544       


Q ss_pred             cccccHHHhccCCCCEecccCCccCCcCCCc----ccccc-ccccccccccccCC-----CCCCCCEEeccCC
Q 038130          431 FERIPESIIQLSRLVVLNLNYCERLQSLPKL----PFNLQ-GIFAHHCTALSSIS-----YKSSTQLFDLSDN  493 (526)
Q Consensus       431 l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~-~L~l~~c~~L~~l~-----~~~~L~~L~l~~c  493 (526)
                          +..+.++++|+.|++.++  ++.++..    .++|+ .+.+.+  .++.++     .+++|+.|++.++
T Consensus       243 ----~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          243 ----DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             ----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             ----HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence                235677888888888775  6666642    34566 666665  444443     4777888877554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.82  E-value=1e-08  Score=101.12  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             EEeeCCCCCCCcCCCCCCCCcccEEEecc-cCCcccC-ccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130          259 KLNLLGCSKLKRLPEFSSSGKIEEIWLDG-TAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS  336 (526)
Q Consensus       259 ~L~l~~~~~~~~lp~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~  336 (526)
                      .+++++++.+..+|.+..+.+|++|+|++ |.++.+| ..|++|++|++|+|++|.+.+..|..+.+|++|++|+|++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            45777754677788888888999999996 9999887 468999999999999998777677778899999999999865


Q ss_pred             CCCcCCCc-ccCcccccceeeccccccc
Q 038130          337 NLQRLPDD-FGNLEASNSTLYAKGTAAK  363 (526)
Q Consensus       337 ~~~~lp~~-~~~l~~L~~~L~l~~~~~~  363 (526)
                       +..+|.. +..+. |+ .|++.+|.+.
T Consensus        92 -l~~~~~~~~~~~~-L~-~l~l~~N~~~  116 (347)
T 2ifg_A           92 -LESLSWKTVQGLS-LQ-ELVLSGNPLH  116 (347)
T ss_dssp             -CSCCCSTTTCSCC-CC-EEECCSSCCC
T ss_pred             -cceeCHHHcccCC-ce-EEEeeCCCcc
Confidence             4556654 44454 88 9999998873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.7e-08  Score=99.38  Aligned_cols=103  Identities=22%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~  310 (526)
                      ..++.++++.+..+|. +..+++|++|+|++++.+..+|.  |.++.+|++|+|++|.|+.+|. .|++|++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4567777547888999 99999999999997345666663  8999999999999999997765 689999999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNL  338 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~  338 (526)
                      |.+. .+|..+.....|+.|++.+|...
T Consensus        90 N~l~-~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             Cccc-eeCHHHcccCCceEEEeeCCCcc
Confidence            9855 56655444444999999987643

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=98.74  E-value=2.5e-09  Score=90.51  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCCCCCCCcEEEecccccccCchHHHHHHHHHh--CCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhh
Q 038130            7 LHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQ--KCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSW   82 (526)
Q Consensus         7 ~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~--~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~   82 (526)
                      |......|||||||+++|.-  |..++..+|+.  .|+++|.++ ++.+|+.|...|.+....+-.+ ++++..++.+.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            34567899999999999964  78899999998  599999888 8999999999999999999999 677788999999


Q ss_pred             cHHHHHHHHHHHhhCCCeEEEEE----eeccchhhhh
Q 038130           83 CLDELLKIVECRTNYGQIVVAVC----YRVEPSHVRK  115 (526)
Q Consensus        83 ~~~~w~~i~~~~~~~~~~il~~s----Y~~Lp~~lk~  115 (526)
                      +..||..++.+.......++|+-    +..+|..|+.
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~  118 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRF  118 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGG
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhC
Confidence            99999999987733333677886    4467888873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.61  E-value=1.3e-09  Score=108.38  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=20.6

Q ss_pred             cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130          408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                      +|+.|+|++|.++..       ....++..+...++|++|+|++|
T Consensus       212 ~L~~L~Ls~N~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          212 QLQELNVAYNGAGDT-------AALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CCCEEECCSSCCCHH-------HHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CcCeEECCCCCCCHH-------HHHHHHHHHHhCCCCCEEeccCC
Confidence            566666666654321       12234444555666777777766

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=98.60  E-value=1.5e-08  Score=87.09  Aligned_cols=100  Identities=14%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             CCCCCCcEEEecccccccCchHHHHHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhh-hceEE-EEecCCccchhhc
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVE-VSSIY-IIFSESDASSSWC   83 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~-GlPLa-~~~~g~~l~~~~~   83 (526)
                      ..+..|||||||+++|  +-|+.++..+|...  |+.++.++ ++.+|+.+...|.+... ++-.+ ++++..++.+.|+
T Consensus        12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            4578999999999999  56999999999985  58999988 89999888888888887 79888 6667888999999


Q ss_pred             HHHHHHHHHHH-hhCCCeEEEEEeeccc
Q 038130           84 LDELLKIVECR-TNYGQIVVAVCYRVEP  110 (526)
Q Consensus        84 ~~~w~~i~~~~-~~~~~~il~~sY~~Lp  110 (526)
                      ..||..+++.. ......++|+.|+..+
T Consensus        90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           90 DFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999875 2333469999998764

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=98.60  E-value=2e-08  Score=87.81  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=83.3

Q ss_pred             CCCCCCcEEEecccccccCchHHH-HHHHHHh--CCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhc
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFTSH-LYSALSQ--KCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWC   83 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~~~-~~~~l~~--~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~   83 (526)
                      ..+..|||||||+++|.  -|+.. +..+|+.  .|+.++.++ ++.+|+.|...|.+...++-.+ ++++..++.+.|+
T Consensus        31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc  108 (178)
T 2j67_A           31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC  108 (178)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred             CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence            46778999999999995  68875 9999998  789999998 8999999999999999999999 6667889999999


Q ss_pred             HHHHHHHHHHH-hhCCCeEEEEEeeccchh
Q 038130           84 LDELLKIVECR-TNYGQIVVAVCYRVEPSH  112 (526)
Q Consensus        84 ~~~w~~i~~~~-~~~~~~il~~sY~~Lp~~  112 (526)
                      ..||..++... ....+.++|+.|+..|.+
T Consensus       109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~~~  138 (178)
T 2j67_A          109 HYEFYFAHHNLFHENSDHIILILLEPIPFY  138 (178)
T ss_dssp             GTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence            99999988543 344557999988876653

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=98.57  E-value=1.1e-08  Score=87.10  Aligned_cols=100  Identities=17%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCCCcEEEecccccccCchHHH-HHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcH
Q 038130           10 QHNRNDVFLSFKGEDTRDNFTSH-LYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCL   84 (526)
Q Consensus        10 ~~~~~~~f~s~~~~d~~~~f~~~-~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~   84 (526)
                      .+..|||||||+++|.  -|..+ +..+|+..  |+.++.++ ++.+|+.+...|.+....+-.+ ++++..++.+.|+.
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3578999999999997  59886 89999986  89999998 8999999999999999999999 66678889999999


Q ss_pred             HHHHHHHHHH-hhCCCeEEEEEeeccch
Q 038130           85 DELLKIVECR-TNYGQIVVAVCYRVEPS  111 (526)
Q Consensus        85 ~~w~~i~~~~-~~~~~~il~~sY~~Lp~  111 (526)
                      .||..++... ....+.++|+.|+..|.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~  107 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence            9998887533 44456789998887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=2.4e-06  Score=85.51  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=125.7

Q ss_pred             CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCccccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~  307 (526)
                      ..++.+.+..+  +..++. .|.+ .+|+.+.+..  .++.++.  |.++.+|+.+++..|.++.+|...-...+|+.+.
T Consensus       135 ~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~  209 (401)
T 4fdw_A          135 SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL  209 (401)
T ss_dssp             CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred             CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence            35666666552  444442 3444 3577777765  3555553  7777778888888777777776544457778877


Q ss_pred             ccCCccCccc-CcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          308 LSDCKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       308 L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      +..+  +..+ ...+.++++|+.+++..+  +..++. .|.+ .+|+ .+.+. +.+ ..++...+..+++|+.+.+..+
T Consensus       210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~-~i~lp-~~i-~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGIT-TVKLP-NGV-TNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCS-EEEEE-TTC-CEECTTTTTTCTTCCEEEEESS
T ss_pred             eCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCcc-EEEeC-CCc-cEEChhHhhCCCCCCEEEeCCc
Confidence            7753  3333 345667777888877652  344433 3444 5666 77763 334 5565555555577777777443


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEecccCCccCCcCCCc-c-
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLNLNYCERLQSLPKL-P-  462 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~-~-  462 (526)
                      ..........+  ...+.++. +|+.+++.+             +++.++ ..+.++++|+.+.|..+  +..++.. + 
T Consensus       282 ~~~~~~~~~I~--~~aF~~c~-~L~~l~l~~-------------~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~  343 (401)
T 4fdw_A          282 TFNDDPEAMIH--PYCLEGCP-KLARFEIPE-------------SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN  343 (401)
T ss_dssp             CCCCCTTCEEC--TTTTTTCT-TCCEECCCT-------------TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred             cccCCcccEEC--HHHhhCCc-cCCeEEeCC-------------ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence            11100000011  11132333 777777763             233333 34566777777777543  4444421 1 


Q ss_pred             -ccccccccccccccccCC-----CC-CCCCEEeccCC
Q 038130          463 -FNLQGIFAHHCTALSSIS-----YK-SSTQLFDLSDN  493 (526)
Q Consensus       463 -~~L~~L~l~~c~~L~~l~-----~~-~~L~~L~l~~c  493 (526)
                       .+|+.+.+.+... ..+.     .+ ..++.|.+-.+
T Consensus       344 ~~~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          344 NTGIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             SSCCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CCCCCEEEEcCCCC-cccccccccCCCCCccEEEeCHH
Confidence             1566666655321 1111     23 35666766543

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=98.50  E-value=1.5e-07  Score=80.84  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             CCcEEEecccccc---------cCchHHHHHH-HHH-hCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCcc-
Q 038130           13 RNDVFLSFKGEDT---------RDNFTSHLYS-ALS-QKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDA-   78 (526)
Q Consensus        13 ~~~~f~s~~~~d~---------~~~f~~~~~~-~l~-~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l-   78 (526)
                      +|||||||+++|.         .+.|+.++.. +|+ +.|++++.++ ++.+|+.|...|.+....+-.. ++++..++ 
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~   81 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV   81 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence            6999999999996         2458888665 588 6899999998 8999999999999999999999 56667886 


Q ss_pred             chhhcHHHHHHHHHHH-hhCCCeEEEEEeeccchh
Q 038130           79 SSSWCLDELLKIVECR-TNYGQIVVAVCYRVEPSH  112 (526)
Q Consensus        79 ~~~~~~~~w~~i~~~~-~~~~~~il~~sY~~Lp~~  112 (526)
                      .+.|+..||..++.+. ....+.++++-|...+..
T Consensus        82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~  116 (159)
T 1t3g_A           82 RRGWSIFELETRLRNMLVTGEIKVILIECSELRGI  116 (159)
T ss_dssp             TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred             cChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence            8999999999999876 555678999988887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=6.4e-08  Score=95.37  Aligned_cols=39  Identities=10%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             CcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130          407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       407 ~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                      ++|++|+|+.|.+..       .....++..+..+++|+.|+|++|
T Consensus       279 ~~L~~LdLs~n~L~d-------~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          279 PQLETMDISAGVLTD-------EGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGCSEEECCSSCCBH-------HHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCEEECCCCCCCh-------HHHHHHHhhcccCCcceEEECCCC
Confidence            377777777765432       122234445556777888888777

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.44  E-value=9.3e-09  Score=102.12  Aligned_cols=131  Identities=16%  Similarity=0.058  Sum_probs=63.6

Q ss_pred             CcceEEEeccCCCCCCCChhcc-----ccCCCcEEeeCCCCCCCc-CCCC-CCCCcccEEEecccCCccc-----Cccc-
Q 038130          231 NTLVILNLSEYVSLNSLPAEIL-----HLEFLKKLNLLGCSKLKR-LPEF-SSSGKIEEIWLDGTAIEEL-----PSSI-  297 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~-lp~~-~~l~~L~~L~L~~~~i~~l-----p~~i-  297 (526)
                      ..++.|++++|.....-...+.     ..++|++|+|++|..... +..+ ..+.+|+.|+|++|.++..     ...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4567777777543221111122     125677777777643211 1111 2344566777776666521     1112 


Q ss_pred             cCCCCCCEEeccCCccCc----ccCcCCCCCCCCcEEeecCCCCCC----cCCCcccCcccccceeecccccc
Q 038130          298 GCLSRLLYLYLSDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQ----RLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       298 ~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      ...++|++|+|++|.+..    .++..+..+++|++|++++|....    .++..+...+.|+ .|++++|.+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i  223 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ-ELNVAYNGA  223 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC-EEECCSSCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC-eEECCCCCC
Confidence            234566667766665322    233334456666666666654221    1123334444555 555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.6e-07  Score=81.54  Aligned_cols=97  Identities=13%  Similarity=0.213  Sum_probs=73.1

Q ss_pred             cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc-----CCCc---ccccccccccccccccc-
Q 038130          408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS-----LPKL---PFNLQGIFAHHCTALSS-  478 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-----lp~~---~~~L~~L~l~~c~~L~~-  478 (526)
                      .|+.|++++|.++.       ..+.    .+.++++|++|+|++|..++.     +...   .++|++|++++|+.++. 
T Consensus        62 ~L~~LDLs~~~Itd-------~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSCIMS-------IGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCCCCG-------GGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCCccH-------HHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            78999999987543       1222    345789999999999976543     2232   24799999999987765 


Q ss_pred             ----CCCCCCCCEEeccCCCCCCHHH-HHHHHHHHHhhhHHh
Q 038130          479 ----ISYKSSTQLFDLSDNFKLDRNA-VRIIVEDALQDIQLM  515 (526)
Q Consensus       479 ----l~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~  515 (526)
                          +..+++|++|+|++|+.++... ....++.++|+++|.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~  172 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK  172 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence                4579999999999999999876 455677788887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.37  E-value=7.4e-06  Score=81.96  Aligned_cols=207  Identities=15%  Similarity=0.163  Sum_probs=139.1

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY  307 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~  307 (526)
                      ..++.+.+.+  .+..++ ..|.+|++|+.+++++| .+..++. .....+|+.+.+..+ ++.++. .|.++.+|+.++
T Consensus       157 ~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          157 STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred             CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence            4678888875  344444 56888999999999985 4666664 333688999999854 776654 588999999999


Q ss_pred             ccCCccCcccCc-CCCCCCCCcEEeecCCCCCCcC-CCcccCcccccceeeccccccc----cccChhhhcccCCcceEE
Q 038130          308 LSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRL-PDDFGNLEASNSTLYAKGTAAK----REVPSSIVGSNNNLYELS  381 (526)
Q Consensus       308 L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~~L~l~~~~~~----~~~~~~l~~~~~~L~~L~  381 (526)
                      +..+  +..++. .+.+ .+|+.+.+.+  .+..+ +..|.++++|+ .+.+.++.+.    ..++...+..+++|+.+.
T Consensus       233 l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~-~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          233 IPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELA-EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE  306 (401)
T ss_dssp             CCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCC-EEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred             cCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCC-EEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence            9874  445554 3444 7899999965  24555 45688999999 9999887652    246777677779999999


Q ss_pred             cccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEecccCCccCCcCCC
Q 038130          382 LDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       382 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                      +..+      +...+.  ..+.++. +|+.+.|..+             ++.++ ..+.++ +|+.|.+.++. ...++.
T Consensus       307 l~~~------i~~I~~--~aF~~c~-~L~~l~lp~~-------------l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~  362 (401)
T 4fdw_A          307 IPES------IRILGQ--GLLGGNR-KVTQLTIPAN-------------VTQINFSAFNNT-GIKEVKVEGTT-PPQVFE  362 (401)
T ss_dssp             CCTT------CCEECT--TTTTTCC-SCCEEEECTT-------------CCEECTTSSSSS-CCCEEEECCSS-CCBCCC
T ss_pred             eCCc------eEEEhh--hhhcCCC-CccEEEECcc-------------ccEEcHHhCCCC-CCCEEEEcCCC-Cccccc
Confidence            8421      111111  1133433 8999998653             33343 356678 99999999873 333332


Q ss_pred             -----ccccccccccc
Q 038130          461 -----LPFNLQGIFAH  471 (526)
Q Consensus       461 -----~~~~L~~L~l~  471 (526)
                           .+.+++.|++.
T Consensus       363 ~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          363 KVWYGFPDDITVIRVP  378 (401)
T ss_dssp             SSCCCSCTTCCEEEEC
T ss_pred             ccccCCCCCccEEEeC
Confidence                 22345555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.21  E-value=1.5e-06  Score=85.47  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=28.8

Q ss_pred             CChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCc-ccCcccc--CCCCCCEEecc
Q 038130          247 LPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE-ELPSSIG--CLSRLLYLYLS  309 (526)
Q Consensus       247 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~-~lp~~i~--~L~~L~~L~L~  309 (526)
                      +...+..+++|+.|.+++|... .++.+ .+++|+.|++..+.+. .....+.  .+++|++|+|+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3344455566666666665322 22332 2555666666555443 1111122  45556666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=7.3e-06  Score=76.58  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             cCCCCCCEEeccCCccCc--ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcc--cccceeeccccccccccCh-----
Q 038130          298 GCLSRLLYLYLSDCKRLK--SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE--ASNSTLYAKGTAAKREVPS-----  368 (526)
Q Consensus       298 ~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~~L~l~~~~~~~~~~~-----  368 (526)
                      .++++|+.|+|++|.+.+  .+|..+..+++|++|+|++|... .+ ..+..+.  .|+ .|++++|.+.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~-~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLE-ELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCS-EEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcc-eEEccCCcCccccCcchhHH
Confidence            456677777777766544  34444556777777777765433 22 2233333  677 777777777555542     


Q ss_pred             -hhhcccCCcceEEc
Q 038130          369 -SIVGSNNNLYELSL  382 (526)
Q Consensus       369 -~l~~~~~~L~~L~l  382 (526)
                       .+...+++|+.|+-
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence             23334477777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.66  E-value=7.6e-06  Score=72.46  Aligned_cols=111  Identities=14%  Similarity=0.020  Sum_probs=56.7

Q ss_pred             ccccCCCcEEeeCCCCCCCc-----CC-CCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCcc---
Q 038130          251 ILHLEFLKKLNLLGCSKLKR-----LP-EFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLKS---  316 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~-----lp-~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~---  316 (526)
                      +...+.|++|+|++|..+..     +. .+....+|++|+|++|.|.     .+...+...++|++|+|++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            34456666666666522222     11 1344555666666666665     2334455556677777777654321   


Q ss_pred             -cCcCCCCCCCCcEEee--cCCCCCCc----CCCcccCcccccceeecccccc
Q 038130          317 -LPSSLSQLKSLKLLNL--HGCSNLQR----LPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       317 -lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                       +...+...++|++|++  ++|.....    +...+...+.|+ .|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~-~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL-KFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC-EEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC-EEeccCCCC
Confidence             3444555666777777  44433221    122233334555 666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.64  E-value=9.5e-06  Score=70.33  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             CCcccEEEecccCCcc-cCccccCCCCCCEEeccCCccCcc-cCcCCCCC----CCCcEEeecCCCCCCcC-CCcccCcc
Q 038130          277 SGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYLSDCKRLKS-LPSSLSQL----KSLKLLNLHGCSNLQRL-PDDFGNLE  349 (526)
Q Consensus       277 l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l----~~L~~L~l~~~~~~~~l-p~~~~~l~  349 (526)
                      -..|+.|+++++.|+. --..+.++++|++|+|++|..++. --..++.+    ++|++|++++|..++.- -..+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3457778888777662 123356677777777777753321 11113332    35667777766544331 01233444


Q ss_pred             cccceeecccc
Q 038130          350 ASNSTLYAKGT  360 (526)
Q Consensus       350 ~L~~~L~l~~~  360 (526)
                      +|+ .|++++|
T Consensus       140 ~L~-~L~L~~c  149 (176)
T 3e4g_A          140 NLK-YLFLSDL  149 (176)
T ss_dssp             TCC-EEEEESC
T ss_pred             CCC-EEECCCC
Confidence            555 5555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.64  E-value=2.7e-05  Score=72.74  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             ccCCCcEEeeCCCCCCCcCC---C-CCCCCcccEEEecccCCcccCccccCCC--CCCEEeccCCccCcccCc-------
Q 038130          253 HLEFLKKLNLLGCSKLKRLP---E-FSSSGKIEEIWLDGTAIEELPSSIGCLS--RLLYLYLSDCKRLKSLPS-------  319 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp---~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp~-------  319 (526)
                      ++++|++|+|++|. +..++   . +..+++|+.|+|++|.|+.+ ..+..+.  +|++|+|++|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45666666666654 33322   2 23556666666666666544 2233333  666666666655444442       


Q ss_pred             CCCCCCCCcEEe
Q 038130          320 SLSQLKSLKLLN  331 (526)
Q Consensus       320 ~i~~l~~L~~L~  331 (526)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            134455555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.54  E-value=2.4e-05  Score=69.14  Aligned_cols=88  Identities=14%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             CCCCCcccEEEeccc-CCc-----ccCccccCCCCCCEEeccCCccCc----ccCcCCCCCCCCcEEeecCCCCCCc---
Q 038130          274 FSSSGKIEEIWLDGT-AIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQR---  340 (526)
Q Consensus       274 ~~~l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~---  340 (526)
                      +...+.|+.|+|++| .+.     .+...+...++|++|+|++|.+..    .+...+...++|++|++++|.....   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344566777777766 665     234445556677777777765432    1223334455666666666543221   


Q ss_pred             -CCCcccCcccccceeec--ccccc
Q 038130          341 -LPDDFGNLEASNSTLYA--KGTAA  362 (526)
Q Consensus       341 -lp~~~~~l~~L~~~L~l--~~~~~  362 (526)
                       +...+...+.|+ .|++  ++|.+
T Consensus       112 ~l~~~L~~n~~L~-~L~L~~~~N~i  135 (185)
T 1io0_A          112 ALVEALQSNTSLI-ELRIDNQSQPL  135 (185)
T ss_dssp             HHHHGGGGCSSCC-EEECCCCSSCC
T ss_pred             HHHHHHHhCCCce-EEEecCCCCCC
Confidence             223344444555 5555  44554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.23  E-value=0.0058  Score=60.72  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             hccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCCccCcccCcCCCCCCC
Q 038130          250 EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKS  326 (526)
Q Consensus       250 ~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~  326 (526)
                      .|.++++|+.+.+.++  ...++.  |.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+.  ..+........+
T Consensus       157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~  231 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTG  231 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCC
T ss_pred             hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCC
Confidence            4556677777777542  333432  566666666666544 33333 235566666666655431  222233334455


Q ss_pred             CcEEeecCCCCCCcCC-CcccCcccccceeecccc
Q 038130          327 LKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGT  360 (526)
Q Consensus       327 L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~  360 (526)
                      |+.+.+...  ...+. ..+..+..++ .+.+..+
T Consensus       232 l~~i~ip~~--~~~i~~~~f~~~~~l~-~~~~~~~  263 (394)
T 4fs7_A          232 VKNIIIPDS--FTELGKSVFYGCTDLE-SISIQNN  263 (394)
T ss_dssp             CCEEEECTT--CCEECSSTTTTCSSCC-EEEECCT
T ss_pred             CceEEECCC--ceecccccccccccce-eEEcCCC
Confidence            666655431  12221 2344455555 5555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.10  E-value=0.016  Score=57.51  Aligned_cols=51  Identities=14%  Similarity=0.238  Sum_probs=25.3

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEe
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWL  285 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L  285 (526)
                      .+++.+.+..  .++.++ .+|.+|.+|+.+++..+  ++.++.  +.++..|+.+.+
T Consensus        71 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           71 RKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             TTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred             CCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcc
Confidence            3455666543  233333 34556667777766542  333432  445555544433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.78  E-value=0.057  Score=53.43  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=34.1

Q ss_pred             CcccccH-HHhccCCCCEecccCCccCCcCCCc----cccccccccccccccccCC-----CCCCCCEEeccCC
Q 038130          430 NFERIPE-SIIQLSRLVVLNLNYCERLQSLPKL----PFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDN  493 (526)
Q Consensus       430 ~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c  493 (526)
                      .++.++. .+.++.+|+.+.|..+  ++.+...    ..+|+.+.+.+  +++.++     ++.+|+.+++.++
T Consensus       298 ~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          298 RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            3444442 4566778888877643  4444431    24566666632  233332     4778888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.11  E-value=0.16  Score=50.20  Aligned_cols=14  Identities=7%  Similarity=-0.009  Sum_probs=6.6

Q ss_pred             HhccCCCCEecccC
Q 038130          438 IIQLSRLVVLNLNY  451 (526)
Q Consensus       438 l~~l~~L~~L~L~~  451 (526)
                      +.++++|+.+++.+
T Consensus       353 F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          353 FSNCTALNNIEYSG  366 (394)
T ss_dssp             GTTCTTCCEEEESS
T ss_pred             hhCCCCCCEEEECC
Confidence            34444555554444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.83  E-value=0.67  Score=45.18  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             CCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcc
Q 038130          321 LSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPIT  399 (526)
Q Consensus       321 i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  399 (526)
                      +....+|+.+.+...  +..++ ..+.++..|+ .+.+..+ + ..+....+..+.+|+.+.+..+      +...+.  
T Consensus       213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~-~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~------i~~i~~--  279 (379)
T 4h09_A          213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALD-EIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK------VKTVPY--  279 (379)
T ss_dssp             TTTCSSCSEEECCTT--CCEECTTTTTTCSSCC-EEEECTT-C-CEECTTTTTTCTTCCEEEECCC------CSEECT--
T ss_pred             cccccccceeeeccc--eeEEccccccCCccce-EEEcCCC-c-cEeCccccceeehhcccccccc------ceeccc--
Confidence            344555666555431  22222 2345555555 5555443 2 3344444444466666666211      000000  


Q ss_pred             cCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEeccc
Q 038130          400 LPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLN  450 (526)
Q Consensus       400 ~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~  450 (526)
                      ..+.+. ++|+.+.+.++.++.++           ...+.++.+|+.+.|.
T Consensus       280 ~aF~~c-~~L~~i~l~~~~i~~I~-----------~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          280 LLCSGC-SNLTKVVMDNSAIETLE-----------PRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTTC-TTCCEEEECCTTCCEEC-----------TTTTTTCTTCCEEECC
T ss_pred             cccccc-cccccccccccccceeh-----------hhhhcCCCCCCEEEcC
Confidence            012222 36777776655433322           1345566666666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.57  E-value=0.2  Score=49.11  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=37.6

Q ss_pred             ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhhhcccC
Q 038130          297 IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN  375 (526)
Q Consensus       297 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~  375 (526)
                      +....+|+.+.+..+ ....-...+..+.+|+.+.+..+  +..+. ..+.++..|+ .+.+..+ + ..++...+..++
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~-~i~l~~~-i-~~i~~~aF~~c~  286 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK-TLNFYAK-V-KTVPYLLCSGCS  286 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC-EEEECCC-C-SEECTTTTTTCT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc-ccccccc-c-eecccccccccc
Confidence            444555666655442 12222233445556666666442  22222 2344555555 5555332 2 344444444446


Q ss_pred             CcceEEc
Q 038130          376 NLYELSL  382 (526)
Q Consensus       376 ~L~~L~l  382 (526)
                      +|+.+.+
T Consensus       287 ~L~~i~l  293 (379)
T 4h09_A          287 NLTKVVM  293 (379)
T ss_dssp             TCCEEEE
T ss_pred             ccccccc
Confidence            6666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.90  E-value=0.042  Score=44.90  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=13.5

Q ss_pred             CCCEEeccCCccCcccCc-CCCCCCCCcEEeecCC
Q 038130          302 RLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGC  335 (526)
Q Consensus       302 ~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~  335 (526)
                      +|++|+|++|.+. .+|. .+..+++|++|+|.+|
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence            3444444444422 2222 2334444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.71  E-value=0.33  Score=39.44  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=12.5

Q ss_pred             eeeccccccccccChhhhcccCCcceEEcc
Q 038130          354 TLYAKGTAAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      .|+|++|.+ ..++...+..+++|+.|+|.
T Consensus        35 ~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           35 ELVLTGNNL-TALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             EEECTTSCC-SSCCTTTGGGCTTCCEEECC
T ss_pred             EEECCCCcC-CccChhhhhhccccCEEEec
Confidence            444444444 44444333333444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.84  E-value=0.089  Score=46.19  Aligned_cols=82  Identities=22%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             ccCCCcEEeeCCCCCCCc-----CC-CCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCc----cc
Q 038130          253 HLEFLKKLNLLGCSKLKR-----LP-EFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SL  317 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~-----lp-~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~l  317 (526)
                      +-+.|+.|+|++++.+..     +. .+..-..|+.|+|++|.|.     .+-..+..-+.|++|+|++|.+..    .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            345677888876433332     11 1444556777777777765     223334444667777777765432    12


Q ss_pred             CcCCCCCCCCcEEeecC
Q 038130          318 PSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       318 p~~i~~l~~L~~L~l~~  334 (526)
                      -+.+..-+.|++|++++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            23344444566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.79  E-value=0.12  Score=45.30  Aligned_cols=105  Identities=12%  Similarity=0.138  Sum_probs=58.6

Q ss_pred             cCcceEEEeccCCCCCC-----CChhccccCCCcEEeeCCCCCCCc----CCC-CCCCCcccEEEecccCCc-----ccC
Q 038130          230 VNTLVILNLSEYVSLNS-----LPAEILHLEFLKKLNLLGCSKLKR----LPE-FSSSGKIEEIWLDGTAIE-----ELP  294 (526)
Q Consensus       230 ~~~l~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~-~~~l~~L~~L~L~~~~i~-----~lp  294 (526)
                      ...++.|++++++.+..     +-..+..-..|+.|+|++|.....    +.. +..-..|+.|+|++|.|+     .+-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            35678888876433321     233445556788888887653221    111 334566788888888876     233


Q ss_pred             ccccCCCCCCEEeccCCcc--Cc-----ccCcCCCCCCCCcEEeecC
Q 038130          295 SSIGCLSRLLYLYLSDCKR--LK-----SLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       295 ~~i~~L~~L~~L~L~~~~~--~~-----~lp~~i~~l~~L~~L~l~~  334 (526)
                      ..+..-+.|++|+|++|..  .+     .+...+..-+.|..|+++.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            4455556688888875421  11     1222333445666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	526
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-09
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIG-NDLKRGDEISQSLGDAVEVSSIYI-I 72
             F+S+ G D+     + L   L ++ ++  +   +   G  I +++   +E S   I +
Sbjct: 14  HAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFV 72

Query: 73  FSESDASSSWCLDELLKIVECRTNYGQIV-VAVCYRVEPSHVRKQ 116
            S +   S WC  EL        + G    + +     P +    
Sbjct: 73  LSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPS 117

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 6/107 (5%)

Query: 15  DVFLSFKGEDT---RDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYI 71
           D F+S+   D     +     L +             D   G  I  ++ D++E S   +
Sbjct: 7   DAFVSYSERDAYWVENLMVQELENFN-PPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTV 65

Query: 72  -IFSESDASSSWCLDEL-LKIVECRTNYGQIVVAVCYRVEPSHVRKQ 116
            + SE+   S WC  EL               + +           Q
Sbjct: 66  FVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 210 NYPGECSPLWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLK 269
                 S  +          ++ L         S N + +       L++LN+    KL 
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLI 297

Query: 270 RLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL 329
            LP  +   ++E +      + E+P     L     L++     L+  P     ++ L++
Sbjct: 298 ELP--ALPPRLERLIASFNHLAEVPELPQNLK---QLHVEYNP-LREFPDIPESVEDLRM 351

Query: 330 LN 331
            +
Sbjct: 352 NS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 265 CSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQL 324
            S  +          +EE+ +    + ELP+    L RL     S    L  +P     L
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFN-HLAEVPELPQNL 326

Query: 325 KSLKLLNLHGCSNLQRLPDDFGNLE 349
           K    L++     L+  PD   ++E
Sbjct: 327 KQ---LHVEYN-PLREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 406 HTTLTSLYLNYCGILELPDSLEK--------NNFERIPESIIQLSRLVVLNLNYCERLQS 457
             +L  L ++   ++ELP    +        N+   +PE       L  L++ Y   L+ 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYN-PLRE 338

Query: 458 LPKLPFNLQ 466
            P +P +++
Sbjct: 339 FPDIPESVE 347

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 3/194 (1%)

Query: 273 EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332
           E S      E+  D   +  LP  +        L+LS+        ++L     L  LNL
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQM 392
                 +   D    +  +    + +  +      +    +  ++    L     G  + 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 393 GLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC 452
                          TL    L     LE       N  E     +  L  L  L L   
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 453 ERLQSLPKLPFNLQ 466
             L ++PK  F   
Sbjct: 183 -SLYTIPKGFFGSH 195

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 292 ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP 342
            LP  +  L  L  L +S       +P     L+   +        L   P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 9/184 (4%)

Query: 286 DGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF 345
               +E++P  +        L L + K  +        LK+L  L L      +  P  F
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 346 GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMG-LSSPITLPLDG 404
             L      LY      K E+P  +  +   L     + +         L+  I + L  
Sbjct: 76  APLV-KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 405 LHTTLTSLYLNYCGILE--LPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462
                + +       ++      +   N   IP+ +     L  L+L+  +  +      
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL 191

Query: 463 FNLQ 466
             L 
Sbjct: 192 KGLN 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.18
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.18
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.8
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.57
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	98.04
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	97.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.43

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.7e-20  Score=181.10  Aligned_cols=235  Identities=17%  Similarity=0.238  Sum_probs=166.9

Q ss_pred             cceEEEeccCCCCC--CCChhccccCCCcEEeeCCC-CCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEE
Q 038130          232 TLVILNLSEYVSLN--SLPAEILHLEFLKKLNLLGC-SKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYL  306 (526)
Q Consensus       232 ~l~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L  306 (526)
                      +++.|+++++....  .+|..++++++|++|+|++| .....+|. ++++.+|++|+|++|.+..+ |..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57899999975544  58899999999999999974 44446885 99999999999999999854 5568999999999


Q ss_pred             eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130          307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW  386 (526)
Q Consensus       307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  386 (526)
                      ++++|.....+|..+.++++|+++++++|...+.+|..+..+..+...+++++|.+.+..|..+..+ . +..+++..+ 
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~-~~~l~l~~~-  207 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSRN-  207 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCSS-
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-c-ccccccccc-
Confidence            9999998889999999999999999999888788999998888874488999998877777666444 3 335666322 


Q ss_pred             CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCcc-cccHHHhccCCCCEecccCCcc
Q 038130          387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFE-RIPESIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~  454 (526)
                         .....   .+...... ++|+.+++++|.+...+..           +++|+++ .+|.+++++++|++|+|++|..
T Consensus       208 ---~~~~~---~~~~~~~~-~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         208 ---MLEGD---ASVLFGSD-KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             ---EEEEC---CGGGCCTT-SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ---ccccc---cccccccc-ccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence               11111   11112222 3677777777665442211           3444454 5666677777777777777655


Q ss_pred             CCcCCCc--ccccccccccccccc
Q 038130          455 LQSLPKL--PFNLQGIFAHHCTAL  476 (526)
Q Consensus       455 l~~lp~~--~~~L~~L~l~~c~~L  476 (526)
                      .+.+|..  +.+|+.+++.+++.+
T Consensus       281 ~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         281 CGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             cccCCCcccCCCCCHHHhCCCccc
Confidence            5566653  345555555554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-17  Score=163.70  Aligned_cols=242  Identities=21%  Similarity=0.296  Sum_probs=159.3

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      .+++.|+++++ .+..+. ++..+++|++|++++| .++.+|.+.++++|++|++++|.+..++. ++++++|++|++++
T Consensus        44 ~~l~~L~l~~~-~I~~l~-gl~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          44 DQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             TTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             CCCCEEECCCC-CCCCcc-ccccCCCCCEEeCcCC-cCCCCccccCCcccccccccccccccccc-cccccccccccccc
Confidence            46889999885 556664 4788999999999997 47778889999999999999999988764 88999999999887


Q ss_pred             CccCccc---------------------------------------------------------------CcCCCCCCCC
Q 038130          311 CKRLKSL---------------------------------------------------------------PSSLSQLKSL  327 (526)
Q Consensus       311 ~~~~~~l---------------------------------------------------------------p~~i~~l~~L  327 (526)
                      +......                                                               +.....++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            6532210                                                               0113345566


Q ss_pred             cEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccC
Q 038130          328 KLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT  407 (526)
Q Consensus       328 ~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      +.+++++|... .++. ...+.+|+ .|++++|.+ ..++ .+... ++|+.|++..    +...   ...  ++... +
T Consensus       200 ~~l~l~~n~i~-~~~~-~~~~~~L~-~L~l~~n~l-~~~~-~l~~l-~~L~~L~l~~----n~l~---~~~--~~~~~-~  263 (384)
T d2omza2         200 ESLIATNNQIS-DITP-LGILTNLD-ELSLNGNQL-KDIG-TLASL-TNLTDLDLAN----NQIS---NLA--PLSGL-T  263 (384)
T ss_dssp             SEEECCSSCCC-CCGG-GGGCTTCC-EEECCSSCC-CCCG-GGGGC-TTCSEEECCS----SCCC---CCG--GGTTC-T
T ss_pred             ceeeccCCccC-CCCc-ccccCCCC-EEECCCCCC-CCcc-hhhcc-cccchhcccc----CccC---CCC--ccccc-c
Confidence            66666665433 2222 34556677 777877777 4443 34444 7788888733    3211   111  12233 3


Q ss_pred             cccEEEccCCCCCCCCCc----------cCCCCcccccHHHhccCCCCEecccCCccCCcCCC--cccccccccccccc-
Q 038130          408 TLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCT-  474 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~-  474 (526)
                      +|+.|+++++.+++++..          +..+.++.++ .+..+++++.|++++| .+..+++  .+++|+.|++++|. 
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCCC
Confidence            888888888887775543          4455555544 4566777888888777 4444543  35678888887773 


Q ss_pred             -ccccCCCCCCCCEEeccCCC
Q 038130          475 -ALSSISYKSSTQLFDLSDNF  494 (526)
Q Consensus       475 -~L~~l~~~~~L~~L~l~~c~  494 (526)
                       .+..+..+++|++|++++|+
T Consensus       342 ~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         342 SDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSSC
T ss_pred             CCChhHcCCCCCCEEECCCCc
Confidence             23334457778888887774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=4.4e-19  Score=171.05  Aligned_cols=232  Identities=19%  Similarity=0.200  Sum_probs=170.7

Q ss_pred             CCCcEEeeCCCCCCC--cCCC-CCCCCcccEEEecc-cCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcE
Q 038130          255 EFLKKLNLLGCSKLK--RLPE-FSSSGKIEEIWLDG-TAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL  329 (526)
Q Consensus       255 ~~L~~L~l~~~~~~~--~lp~-~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~  329 (526)
                      .+++.|+|+++....  .+|. ++.+++|++|+|++ |.+. .+|.+|++|++|++|+|++|.+.+..|..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999976544  3664 99999999999985 7777 89999999999999999999988888888899999999


Q ss_pred             EeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcc
Q 038130          330 LNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL  409 (526)
Q Consensus       330 L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  409 (526)
                      ++++.|.....+|..+++++.++ .+++++|.+.+.+|..+..+...++.+.+..|    .....   .+..+ ... .+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~-~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n----~l~~~---~~~~~-~~l-~~  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTISRN----RLTGK---IPPTF-ANL-NL  199 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGCCCTTCCEEECCSS----EEEEE---CCGGG-GGC-CC
T ss_pred             cccccccccccCchhhccCcccc-eeeccccccccccccccccccccccccccccc----ccccc---ccccc-ccc-cc
Confidence            99999988889999999999999 99999999988999988887444577877433    21111   11111 222 55


Q ss_pred             cEEEccCCCCCCC-CCc-----------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---ccccccccccccc
Q 038130          410 TSLYLNYCGILEL-PDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCT  474 (526)
Q Consensus       410 ~~L~L~~~~~~~l-p~~-----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~  474 (526)
                      ..+++.++...+. |..           +.++.+...+..+..+++|+.|++++|...+.+|..   +++|++|+++++.
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            5788888765542 221           455555555556667778888888887666677753   4567777777754


Q ss_pred             ccccCC---CCCCCCEEeccCCCCC
Q 038130          475 ALSSIS---YKSSTQLFDLSDNFKL  496 (526)
Q Consensus       475 ~L~~l~---~~~~L~~L~l~~c~~l  496 (526)
                      --..+|   .+.+|+.+++++|+.+
T Consensus       280 l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         280 LCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             ccccCCCcccCCCCCHHHhCCCccc
Confidence            222333   4567777777777644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.6e-17  Score=153.48  Aligned_cols=192  Identities=22%  Similarity=0.252  Sum_probs=141.1

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~  311 (526)
                      ...+.++ ..++.+|..+.  ++|++|+|++|. ++.+|  .+.++++|++|+|++|.|+.+|. ++.+++|++|++++|
T Consensus        13 ~~v~C~~-~~L~~iP~~lp--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          13 LEVNCDK-RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CEEECTT-SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS
T ss_pred             eEEEccC-CCCCeeCcCcC--cCCCEEECcCCc-CCCcCHHHhhcccccccccccccccccccc-ccccccccccccccc
Confidence            3456555 55677887653  578999999865 55555  37888999999999999988874 578899999999998


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ  391 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  391 (526)
                      . +...|..+..+++|+.|++++|......+..+..+.+++ .|++++|.+ ..++......+++|+.|+++.|    ..
T Consensus        88 ~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~L~l~~n~l-~~l~~~~~~~l~~l~~l~l~~N----~l  160 (266)
T d1p9ag_          88 Q-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ-ELYLKGNEL-KTLPPGLLTPTPKLEKLSLANN----NL  160 (266)
T ss_dssp             C-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-EEECTTSCC-CCCCTTTTTTCTTCCEEECTTS----CC
T ss_pred             c-ccccccccccccccccccccccccceeeccccccccccc-ccccccccc-ceeccccccccccchhcccccc----cc
Confidence            7 445677788899999999998776665566677888888 999999988 6777766665588999998443    21


Q ss_pred             CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130          392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE  453 (526)
Q Consensus       392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~  453 (526)
                         .......+..+ ++|++|+|++|+++            .+|..+..+++|+.|+|++|+
T Consensus       161 ---~~~~~~~~~~l-~~L~~L~Ls~N~L~------------~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         161 ---TELPAGLLNGL-ENLDTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ---SCCCTTTTTTC-TTCCEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCC
T ss_pred             ---cccCccccccc-cccceeecccCCCc------------ccChhHCCCCCCCEEEecCCC
Confidence               11111113333 38999999888654            455566678889999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-16  Score=150.00  Aligned_cols=201  Identities=22%  Similarity=0.138  Sum_probs=150.9

Q ss_pred             ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          253 HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      +...+...+.+++ .++.+|. +.  +++++|+|++|.|+.+|. .|.++++|++|+|++|. +..+|. ++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEE
T ss_pred             ccCCCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-cccccccccc
Confidence            4556666788774 4677875 53  578999999999998875 58999999999999987 456765 6789999999


Q ss_pred             eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130          331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT  410 (526)
Q Consensus       331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  410 (526)
                      ++++|. +...+..+.+++.|+ .|+++++.+ ..++......+.+++.|.+..|    .......   ..+..+ ++|+
T Consensus        83 ~Ls~N~-l~~~~~~~~~l~~L~-~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n----~l~~l~~---~~~~~l-~~l~  151 (266)
T d1p9ag_          83 DLSHNQ-LQSLPLLGQTLPALT-VLDVSFNRL-TSLPLGALRGLGELQELYLKGN----ELKTLPP---GLLTPT-PKLE  151 (266)
T ss_dssp             ECCSSC-CSSCCCCTTTCTTCC-EEECCSSCC-CCCCSSTTTTCTTCCEEECTTS----CCCCCCT---TTTTTC-TTCC
T ss_pred             cccccc-ccccccccccccccc-ccccccccc-ceeecccccccccccccccccc----ccceecc---cccccc-ccch
Confidence            999964 566778899999999 999999998 5565555555599999999543    2111111   112233 4999


Q ss_pred             EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEEec
Q 038130          411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDL  490 (526)
Q Consensus       411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l  490 (526)
                      .|++++|+++++|           +..+..+++|++|+|++|. ++.+|+..                 ..+++|+.|++
T Consensus       152 ~l~l~~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~-L~~lp~~~-----------------~~~~~L~~L~L  202 (266)
T d1p9ag_         152 KLSLANNNLTELP-----------AGLLNGLENLDTLLLQENS-LYTIPKGF-----------------FGSHLLPFAFL  202 (266)
T ss_dssp             EEECTTSCCSCCC-----------TTTTTTCTTCCEEECCSSC-CCCCCTTT-----------------TTTCCCSEEEC
T ss_pred             hcccccccccccC-----------ccccccccccceeecccCC-CcccChhH-----------------CCCCCCCEEEe
Confidence            9999999877654           4567789999999999984 66777422                 23567889999


Q ss_pred             cCCCCCCH
Q 038130          491 SDNFKLDR  498 (526)
Q Consensus       491 ~~c~~l~~  498 (526)
                      ++||-...
T Consensus       203 ~~Np~~Cd  210 (266)
T d1p9ag_         203 HGNPWLCN  210 (266)
T ss_dssp             CSCCBCCS
T ss_pred             cCCCCCCC
Confidence            99985543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=9e-17  Score=153.96  Aligned_cols=234  Identities=22%  Similarity=0.275  Sum_probs=128.2

Q ss_pred             cceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130          232 TLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS  309 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~  309 (526)
                      .+++|++++| .+..+|+ .|.++++|++|++++|......|. +..+++|++|++++|+++.+|..+.  ..|+.|++.
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~--~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh--hhhhhhhcc
Confidence            4555566553 3444443 355555666666655543333332 5555555666666555555554332  355555555


Q ss_pred             CCccCcccCcCCCCCCCCcEEeecCCCCC--CcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130          310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNL--QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG  387 (526)
Q Consensus       310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  387 (526)
                      .|......+..+.....+..++...+...  ...+..+..++.|+ .+++.+|.+ ..+|..+   +++|+.|++..+  
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~-~l~l~~n~l-~~l~~~~---~~~L~~L~l~~n--  181 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNI-TTIPQGL---PPSLTELHLDGN--  181 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCC-CSCCSSC---CTTCSEEECTTS--
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccC-ccccccCCc-cccCccc---CCccCEEECCCC--
Confidence            54433222222333444455554443221  11223455555566 666666665 4454432   256666666332  


Q ss_pred             CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---ccc
Q 038130          388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFN  464 (526)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~  464 (526)
                        .....   ....+.+.. .++.|++++|.+++++           +.++.++++|++|+|++| .++.+|..   +++
T Consensus       182 --~~~~~---~~~~~~~~~-~l~~L~~s~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~  243 (305)
T d1xkua_         182 --KITKV---DAASLKGLN-NLAKLGLSFNSISAVD-----------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKY  243 (305)
T ss_dssp             --CCCEE---CTGGGTTCT-TCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSS
T ss_pred             --cCCCC---ChhHhhccc-cccccccccccccccc-----------cccccccccceeeecccc-cccccccccccccC
Confidence              11111   111122332 6666666666554432           457778899999999998 56777753   568


Q ss_pred             ccccccccccccccCC-----------CCCCCCEEeccCCC
Q 038130          465 LQGIFAHHCTALSSIS-----------YKSSTQLFDLSDNF  494 (526)
Q Consensus       465 L~~L~l~~c~~L~~l~-----------~~~~L~~L~l~~c~  494 (526)
                      |++|+++++ +++.++           ..++|+.|++++||
T Consensus       244 L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         244 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            888888886 355553           36789999999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=144.55  Aligned_cols=225  Identities=25%  Similarity=0.364  Sum_probs=142.7

Q ss_pred             EEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCc
Q 038130          236 LNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCK  312 (526)
Q Consensus       236 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~  312 (526)
                      ++.++ ..++.+|..+.  +.+++|+|++|. ++.+|.  +.++.+|++|+++++.+..++. .+..+..++.++...+.
T Consensus        16 v~c~~-~~L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQ-QGLQAVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCS-SCCSSCCTTCC--TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCC-CCCCccCCCCC--CCCCEEECcCCc-CCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            33443 45677776553  567888888865 555553  7788888888888888875544 35667778887766544


Q ss_pred             cCccc-CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130          313 RLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ  391 (526)
Q Consensus       313 ~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  391 (526)
                      ....+ |..+.++++|++|++++|......+..+..+..|+ .+++++|.+ ..+|...+..+++|+.|++..|    ..
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N----~l  165 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-YLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN----RI  165 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CC
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccc-hhhhccccc-cccChhHhccccchhhcccccC----cc
Confidence            44444 55677788888888888665444455667777777 888888888 5666554444477888888433    21


Q ss_pred             CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccc
Q 038130          392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAH  471 (526)
Q Consensus       392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~  471 (526)
                         ....+..+.++. +|+.+++++|.+++++           |.++..+++|+.|++++|.. ..++.           
T Consensus       166 ---~~l~~~~f~~l~-~L~~l~l~~N~l~~i~-----------~~~f~~l~~L~~L~l~~N~i-~~~~~-----------  218 (284)
T d1ozna_         166 ---SSVPERAFRGLH-SLDRLLLHQNRVAHVH-----------PHAFRDLGRLMTLYLFANNL-SALPT-----------  218 (284)
T ss_dssp             ---CEECTTTTTTCT-TCCEEECCSSCCCEEC-----------TTTTTTCTTCCEEECCSSCC-SCCCH-----------
T ss_pred             ---cccchhhhcccc-ccchhhhhhccccccC-----------hhHhhhhhhccccccccccc-ccccc-----------
Confidence               111111123333 7888888877655432           56677778888888887743 32221           


Q ss_pred             cccccccCCCCCCCCEEeccCCCCCCHHHHH
Q 038130          472 HCTALSSISYKSSTQLFDLSDNFKLDRNAVR  502 (526)
Q Consensus       472 ~c~~L~~l~~~~~L~~L~l~~c~~l~~~~~~  502 (526)
                           ..+..+++|++|++++||--......
T Consensus       219 -----~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         219 -----EALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             -----HHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             -----cccccccccCEEEecCCCCCCCccch
Confidence                 12335677888888888754443333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-15  Score=144.04  Aligned_cols=201  Identities=23%  Similarity=0.277  Sum_probs=153.8

Q ss_pred             CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEec-ccCCccc-CccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLD-GTAIEEL-PSSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~-~~~i~~l-p~~i~~L~~L~~  305 (526)
                      ..+++|++++| .+..+| ..|.+++.|++|+++++. +..++ . +.....++.+... .+.+..+ |..+.++++|++
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            46799999996 456666 468899999999999975 44444 3 6677888888765 6677766 556899999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |++++|......+..+....+|+.+++++|......+..+..++.|+ .|++++|.+ ..++...+..+++|+.+.+..|
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~-~L~l~~N~l-~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CEECTTTTTTCTTCCEEECCSS
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchh-hcccccCcc-cccchhhhccccccchhhhhhc
Confidence            99999986555566678899999999999665444445688899999 999999999 6666655555599999999544


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCcc
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCER  454 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~  454 (526)
                          ...   ...+..+.++. +|++|++++|.+.++|           |.++..+++|+.|++++|+.
T Consensus       188 ----~l~---~i~~~~f~~l~-~L~~L~l~~N~i~~~~-----------~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         188 ----RVA---HVHPHAFRDLG-RLMTLYLFANNLSALP-----------TEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             ----CCC---EECTTTTTTCT-TCCEEECCSSCCSCCC-----------HHHHTTCTTCCEEECCSSCE
T ss_pred             ----ccc---ccChhHhhhhh-hccccccccccccccc-----------ccccccccccCEEEecCCCC
Confidence                221   21222244544 9999999999877654           67888999999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.9e-15  Score=145.63  Aligned_cols=82  Identities=13%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             cccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130          252 LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN  331 (526)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~  331 (526)
                      ..+.+|++|++++|. ++.++.+..+++|++|++++|.|+.+|. ++++++|++|++++|.+. .++. ++.+++|+.|+
T Consensus        41 ~~l~~l~~L~l~~~~-I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          41 TDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLT  116 (384)
T ss_dssp             HHHTTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEE
T ss_pred             HHhCCCCEEECCCCC-CCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-cccc-ccccccccccc
Confidence            458899999999964 6778888899999999999999999985 999999999999999854 4554 88999999999


Q ss_pred             ecCCCC
Q 038130          332 LHGCSN  337 (526)
Q Consensus       332 l~~~~~  337 (526)
                      ++++..
T Consensus       117 ~~~~~~  122 (384)
T d2omza2         117 LFNNQI  122 (384)
T ss_dssp             CCSSCC
T ss_pred             cccccc
Confidence            987543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=3.5e-14  Score=138.10  Aligned_cols=234  Identities=24%  Similarity=0.313  Sum_probs=140.0

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      +++++|+++++ .++.+|+.   .++|++|++++| .++.+|..  ..+|+.|++++|.++.++.-   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL---PPHLESLVASCN-SLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC---CTTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCC-CCCCCCCC---CCCCCEEECCCC-CCcccccc--hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            46889999984 57788864   578999999986 46677763  45789999999988877642   14699999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcc-------------------cCcccccceeeccccccccccCh---
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF-------------------GNLEASNSTLYAKGTAAKREVPS---  368 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-------------------~~l~~L~~~L~l~~~~~~~~~~~---  368 (526)
                      |. +..+|. ++.+++|++|++++|.. ...|...                   +.++.++ .+.+..+.. ..++.   
T Consensus       108 n~-l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~-~L~l~~n~~-~~~~~~~~  182 (353)
T d1jl5a_         108 NQ-LEKLPE-LQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT-AIYADNNSL-KKLPDLPL  182 (353)
T ss_dssp             SC-CSSCCC-CTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC-EEECCSSCC-SSCCCCCT
T ss_pred             cc-cccccc-hhhhccceeeccccccc-cccccccccccchhhccccccccccccccccce-ecccccccc-cccccccc
Confidence            87 556775 67899999999987643 3333222                   2233333 333333322 11110   


Q ss_pred             ----------------hhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc-------
Q 038130          369 ----------------SIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-------  425 (526)
Q Consensus       369 ----------------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-------  425 (526)
                                      ....+ +.|+.+.+..+.    ....        .....++..+.+..+.+...+..       
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l-~~L~~l~l~~n~----~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  249 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNL-PFLTTIYADNNL----LKTL--------PDLPPSLEALNVRDNYLTDLPELPQSLTFL  249 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTC-TTCCEEECCSSC----CSSC--------CSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             ccccccccccccccccccccc-cccccccccccc----cccc--------cccccccccccccccccccccccccccccc
Confidence                            01111 344444442220    0000        00001222222222222221111       


Q ss_pred             ---------------------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCC-CC
Q 038130          426 ---------------------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISY-KS  483 (526)
Q Consensus       426 ---------------------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~-~~  483 (526)
                                           +..+.+..++   ..+++|++|+|++| .+..+|..+++|+.|++++| .++.++. ++
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~L~~l~~~~~  324 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQ  324 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEEC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCT
T ss_pred             ccccccccccccccchhcccccccCcccccc---ccCCCCCEEECCCC-ccCccccccCCCCEEECCCC-cCCccccccC
Confidence                                 1112222222   23579999999998 57789988899999999877 4677764 56


Q ss_pred             CCCEEeccCCCCCCH
Q 038130          484 STQLFDLSDNFKLDR  498 (526)
Q Consensus       484 ~L~~L~l~~c~~l~~  498 (526)
                      +|++|++++|+ ++.
T Consensus       325 ~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         325 NLKQLHVEYNP-LRE  338 (353)
T ss_dssp             TCCEEECCSSC-CSS
T ss_pred             CCCEEECcCCc-CCC
Confidence            89999999997 654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=3.5e-14  Score=135.55  Aligned_cols=234  Identities=19%  Similarity=0.256  Sum_probs=161.0

Q ss_pred             cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEec
Q 038130          232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYL  308 (526)
Q Consensus       232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L  308 (526)
                      ..+.++-++ ..++.+|..+.  +.+++|++++|. ++.+|  .+.++.+|++|+++++.+..+ |..|.++++|++|++
T Consensus        11 ~~~~~~C~~-~~L~~lP~~l~--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTT-SCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecC-CCCCccCCCCC--CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            345566555 45778887663  689999999874 66666  378889999999999988877 556889999999999


Q ss_pred             cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc--ccccChhhhcccCCcceEEcccCC
Q 038130          309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA--KREVPSSIVGSNNNLYELSLDRSW  386 (526)
Q Consensus       309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~  386 (526)
                      ++|. +..+|..+  ...+..|.+..+......+..+.....+. .+....+..  ....+..+..+ ++|+.+++.   
T Consensus        87 ~~n~-l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~-~l~~~~n~~~~~~~~~~~~~~l-~~L~~l~l~---  158 (305)
T d1xkua_          87 SKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQGM-KKLSYIRIA---  158 (305)
T ss_dssp             CSSC-CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCC-EEECCSSCCCGGGBCTTGGGGC-TTCCEEECC---
T ss_pred             cCCc-cCcCccch--hhhhhhhhccccchhhhhhhhhhcccccc-ccccccccccccCCCccccccc-cccCccccc---
Confidence            9886 55677643  45788888887544333223344555555 666666533  12233344444 888888883   


Q ss_pred             CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC----cc
Q 038130          387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK----LP  462 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~~  462 (526)
                       ++......      . ..+++|+.|++++|..+.           ..+..+..++.++.|++++| .+..++.    ..
T Consensus       159 -~n~l~~l~------~-~~~~~L~~L~l~~n~~~~-----------~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l  218 (305)
T d1xkua_         159 -DTNITTIP------Q-GLPPSLTELHLDGNKITK-----------VDAASLKGLNNLAKLGLSFN-SISAVDNGSLANT  218 (305)
T ss_dssp             -SSCCCSCC------S-SCCTTCSEEECTTSCCCE-----------ECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             -cCCccccC------c-ccCCccCEEECCCCcCCC-----------CChhHhhccccccccccccc-ccccccccccccc
Confidence             33221111      1 223589999999887544           33567888999999999998 4555543    25


Q ss_pred             ccccccccccccccccCC----CCCCCCEEeccCCCCCCHH
Q 038130          463 FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRN  499 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~  499 (526)
                      ++|++|+++++ .++.++    .+++|++|++++|. ++..
T Consensus       219 ~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i  257 (305)
T d1xkua_         219 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAI  257 (305)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCC
T ss_pred             ccceeeecccc-cccccccccccccCCCEEECCCCc-cCcc
Confidence            78999999998 455554    58999999999984 5543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3.7e-14  Score=129.26  Aligned_cols=175  Identities=21%  Similarity=0.315  Sum_probs=109.6

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL  330 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L  330 (526)
                      +..+.+|+.|++.+|. ++.++.+..+++|++|++++|.+..++. +..+++|+++++++|. .+.++ .+..+++|+.+
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          37 QADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEECCCCC-CCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccc-ccccccccccc
Confidence            3456777788887764 5566667777778888888777776653 7777788888887765 33444 36677788888


Q ss_pred             eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130          331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT  410 (526)
Q Consensus       331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  410 (526)
                      ++++|.....  ..+.....+. .+.++++.+ .... .+... ++|+.|.+.    ++.....   .  ++.+++ +|+
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~-~l~~~~~~~-~~~~-~~~~~-~~L~~L~l~----~n~~~~~---~--~l~~l~-~L~  176 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQ-VLYLDLNQI-TNIS-PLAGL-TNLQYLSIG----NAQVSDL---T--PLANLS-KLT  176 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCC-EEECCSSCC-CCCG-GGGGC-TTCCEEECC----SSCCCCC---G--GGTTCT-TCC
T ss_pred             cccccccccc--chhccccchh-hhhchhhhh-chhh-hhccc-ccccccccc----ccccccc---h--hhcccc-cce
Confidence            8777543322  2344555566 777777666 2222 23344 778888873    3321111   1  133433 888


Q ss_pred             EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130          411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP  459 (526)
Q Consensus       411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp  459 (526)
                      .|++++|.+++            +| .++++++|++|+|++| .++.++
T Consensus       177 ~L~Ls~n~l~~------------l~-~l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         177 TLKADDNKISD------------IS-PLASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             EEECCSSCCCC------------CG-GGGGCTTCCEEECTTS-CCCBCG
T ss_pred             ecccCCCccCC------------Ch-hhcCCCCCCEEECcCC-cCCCCc
Confidence            88888876544            23 3677888888888887 455544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=5.6e-13  Score=129.33  Aligned_cols=229  Identities=23%  Similarity=0.251  Sum_probs=150.7

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      +.+++|++++ +.++.+|..   +.+|+.|++++|. ++.++.+.  ..|++|++++|.+..+|. ++.+++|++|++++
T Consensus        58 ~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~l~~n~-l~~l~~lp--~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          58 PHLESLVASC-NSLTELPEL---PQSLKSLLVDNNN-LKALSDLP--PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDN  129 (353)
T ss_dssp             TTCSEEECCS-SCCSSCCCC---CTTCCEEECCSSC-CSCCCSCC--TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCS
T ss_pred             CCCCEEECCC-CCCcccccc---hhhhhhhhhhhcc-cchhhhhc--cccccccccccccccccc-hhhhccceeecccc
Confidence            4689999998 467788875   4688999999864 55565543  358999999999999985 68899999999988


Q ss_pred             CccCcc------------------cCcCCCCCCCCcEEeecCCCCCC-------------------cCCCcccCcccccc
Q 038130          311 CKRLKS------------------LPSSLSQLKSLKLLNLHGCSNLQ-------------------RLPDDFGNLEASNS  353 (526)
Q Consensus       311 ~~~~~~------------------lp~~i~~l~~L~~L~l~~~~~~~-------------------~lp~~~~~l~~L~~  353 (526)
                      |.....                  .+..+..++.++.|.+.++....                   .+ ..+..++.++ 
T Consensus       130 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~L~-  207 (353)
T d1jl5a_         130 NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PELQNLPFLT-  207 (353)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC-CCCTTCTTCC-
T ss_pred             ccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccc-cccccccccc-
Confidence            764321                  11234556777888777643221                   12 2345677788 


Q ss_pred             eeeccccccccccChhhhcccCCcceEEcccCCCCC------------------CCCCCCCC----------cccCcccc
Q 038130          354 TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD------------------KQMGLSSP----------ITLPLDGL  405 (526)
Q Consensus       354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~------------------~~~~~~~~----------~~~~~~~~  405 (526)
                      .+++++|.. ..++...    .++..+.+..+....                  ..+.....          ....+...
T Consensus       208 ~l~l~~n~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  282 (353)
T d1jl5a_         208 TIYADNNLL-KTLPDLP----PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL  282 (353)
T ss_dssp             EEECCSSCC-SSCCSCC----TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC
T ss_pred             ccccccccc-ccccccc----ccccccccccccccccccccccccccccccccccccccccchhcccccccCcccccccc
Confidence            888888766 4444322    334444443221000                  00000000          00001223


Q ss_pred             cCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCC-C
Q 038130          406 HTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKS-S  484 (526)
Q Consensus       406 ~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~-~  484 (526)
                      +++|++|+|++|.++.+            |.   .+++|+.|++++| .++.+|..+++|+.|++++|+ ++.+|.++ +
T Consensus       283 ~~~L~~L~Ls~N~l~~l------------p~---~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~  345 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIEL------------PA---LPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPDIPES  345 (353)
T ss_dssp             CTTCCEEECCSSCCSCC------------CC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCCCTT
T ss_pred             CCCCCEEECCCCccCcc------------cc---ccCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCccccc
Confidence            45788888888766554            42   3679999999988 578999988999999999987 88888655 7


Q ss_pred             CCEEecc
Q 038130          485 TQLFDLS  491 (526)
Q Consensus       485 L~~L~l~  491 (526)
                      |+.|.+.
T Consensus       346 L~~L~~~  352 (353)
T d1jl5a_         346 VEDLRMN  352 (353)
T ss_dssp             CCEEECC
T ss_pred             cCeeECc
Confidence            9988875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=5.6e-14  Score=125.16  Aligned_cols=150  Identities=17%  Similarity=0.306  Sum_probs=96.4

Q ss_pred             cccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130          252 LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN  331 (526)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~  331 (526)
                      ..+.++++|++++|. +..++.+..+++|++|++++|.++.++. ++++++|++|++++|. ...++. +.++++|+.|+
T Consensus        37 ~~l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCCC-CCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccc-cccccc-ccccccccccc
Confidence            346778888888754 5566667777888888888888877664 7788888888888776 344443 67788888888


Q ss_pred             ecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccE
Q 038130          332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS  411 (526)
Q Consensus       332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  411 (526)
                      +++|.... . ..+.++++|+ .|++++|.+ ..++ .+... ++|+.|++.    ++.....   .  ++.++. +|++
T Consensus       113 l~~~~~~~-~-~~~~~l~~L~-~L~l~~n~l-~~~~-~l~~~-~~L~~L~l~----~n~l~~l---~--~l~~l~-~L~~  176 (199)
T d2omxa2         113 LFNNQITD-I-DPLKNLTNLN-RLELSSNTI-SDIS-ALSGL-TSLQQLNFS----SNQVTDL---K--PLANLT-TLER  176 (199)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCS-EEECCSSCC-CCCG-GGTTC-TTCSEEECC----SSCCCCC---G--GGTTCT-TCCE
T ss_pred             cccccccc-c-cccchhhhhH-Hhhhhhhhh-cccc-ccccc-ccccccccc----cccccCC---c--cccCCC-CCCE
Confidence            87754433 2 3466777777 888887776 4443 34444 667777663    2221111   0  122333 7777


Q ss_pred             EEccCCCCCC
Q 038130          412 LYLNYCGILE  421 (526)
Q Consensus       412 L~L~~~~~~~  421 (526)
                      |++++|++++
T Consensus       177 L~ls~N~i~~  186 (199)
T d2omxa2         177 LDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCCCCC
Confidence            7777765443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7e-14  Score=128.66  Aligned_cols=218  Identities=18%  Similarity=0.237  Sum_probs=117.5

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcc-cC-ccccCCCCCCEEecc
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEE-LP-SSIGCLSRLLYLYLS  309 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~-lp-~~i~~L~~L~~L~L~  309 (526)
                      ++++.++ ..++.+|..+.  +++++|++++|. ++.+|.  |.++++|++|++++|.+.. +| ..+.+++++++|.+.
T Consensus        11 ~~i~c~~-~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEES-CSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeC-CCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4566665 45566776542  467777777754 455553  6777777777777777653 33 346677777777765


Q ss_pred             CC-ccCcccCcCCCCCCCCcEEeecCCCCCCcCCC--cccCcccccceeeccccccccccChh-hhcccCCcceEEcccC
Q 038130          310 DC-KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD--DFGNLEASNSTLYAKGTAAKREVPSS-IVGSNNNLYELSLDRS  385 (526)
Q Consensus       310 ~~-~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~  385 (526)
                      .+ ......+..+.++++|++|++++|.. ...+.  .+..+..+. .+...++.+ ..++.. +......++.|.+..+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l-~~~~~~~~~~~l~~l~-~~~~~n~~l-~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVL-LDIQDNINI-HTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCC-CSCCCCTTTCBSSCEE-EEEESCTTC-CEECTTSSTTSBSSCEEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhh-cccccccccccccccc-ccccccccc-ccccccccccccccceeeecccc
Confidence            43 33334445566777777777777543 33322  122333333 334444444 333332 2233245666666322


Q ss_pred             CCCCCCCCCCCCcccCcccccCcccEE-EccCCCCCCCCCccCCCCcccccH-HHhccCCCCEecccCCccCCcCCC-cc
Q 038130          386 WGGDKQMGLSSPITLPLDGLHTTLTSL-YLNYCGILELPDSLEKNNFERIPE-SIIQLSRLVVLNLNYCERLQSLPK-LP  462 (526)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~~~lp~~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-~~  462 (526)
                          .....    ........ +++.+ .+++|            .++.+|. .+.++++|+.|+|++|+ ++.+|. .+
T Consensus       164 ----~l~~i----~~~~~~~~-~l~~~~~l~~n------------~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~  221 (242)
T d1xwdc1         164 ----GIQEI----HNCAFNGT-QLDELNLSDNN------------NLEELPNDVFHGASGPVILDISRTR-IHSLPSYGL  221 (242)
T ss_dssp             ----CCCEE----CTTTTTTC-CEEEEECTTCT------------TCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSC
T ss_pred             ----ccccc----ccccccch-hhhcccccccc------------ccccccHHHhcCCCCCCEEECCCCc-CCccCHHHH
Confidence                11000    00011112 44433 33444            4555554 36789999999999985 667765 34


Q ss_pred             ccccccccccccccccCC
Q 038130          463 FNLQGIFAHHCTALSSIS  480 (526)
Q Consensus       463 ~~L~~L~l~~c~~L~~l~  480 (526)
                      .+|..|..-++..++.+|
T Consensus       222 ~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         222 ENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             TTCCEEESSSEESSSCSC
T ss_pred             cCCcccccCcCCCCCcCC
Confidence            555555444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=7.3e-14  Score=125.52  Aligned_cols=166  Identities=24%  Similarity=0.405  Sum_probs=98.2

Q ss_pred             ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130          253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL  332 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l  332 (526)
                      .+..|+.|++++|. ++.++.+..+++|++|++++|.|+.++. ++.+++|++|++++|. +..+|. +..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~-i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCC-CCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-cccccc-cccccccccccc
Confidence            35667777776653 4555566667777777777777776653 5677777777777765 344553 666777777777


Q ss_pred             cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEE
Q 038130          333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL  412 (526)
Q Consensus       333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  412 (526)
                      ++|.. ..+ ..+..++.++ .+++++|.+ ...+ .+..+ ++|+.++++.    +.....   .  ++.+++ +|+.|
T Consensus       120 ~~~~~-~~~-~~l~~l~~l~-~l~~~~n~l-~~~~-~~~~l-~~L~~l~l~~----n~l~~i---~--~l~~l~-~L~~L  183 (210)
T d1h6ta2         120 EHNGI-SDI-NGLVHLPQLE-SLYLGNNKI-TDIT-VLSRL-TKLDTLSLED----NQISDI---V--PLAGLT-KLQNL  183 (210)
T ss_dssp             TTSCC-CCC-GGGGGCTTCC-EEECCSSCC-CCCG-GGGGC-TTCSEEECCS----SCCCCC---G--GGTTCT-TCCEE
T ss_pred             ccccc-ccc-cccccccccc-ccccccccc-cccc-ccccc-cccccccccc----cccccc---c--cccCCC-CCCEE
Confidence            76543 223 3456666666 777777666 2222 23333 6667766633    221111   1  122333 77777


Q ss_pred             EccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccC
Q 038130          413 YLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY  451 (526)
Q Consensus       413 ~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~  451 (526)
                      ++++|.+++            +| .+.++++|+.|+|++
T Consensus       184 ~Ls~N~i~~------------l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHISD------------LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCB------------CG-GGTTCTTCSEEEEEE
T ss_pred             ECCCCCCCC------------Ch-hhcCCCCCCEEEccC
Confidence            777775433            33 466777888877753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=3.4e-13  Score=122.71  Aligned_cols=186  Identities=19%  Similarity=0.243  Sum_probs=141.9

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      .+++.|++.+| .+..++ .+.++++|++|++++|. +..++.+..+.++++++++++.++.++ .+..+++|+++++++
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             CCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCce-eeccccccccccccccccccccccccc-ccccccccccccccc
Confidence            47899999996 466775 48999999999999975 566667899999999999999999876 588999999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.... ++ .+...+.+..+.++++.....  ..+.++++|+ .|++++|.+ ...+. +..+ ++|+.|+++    ++.
T Consensus       117 ~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~-~L~l~~n~~-~~~~~-l~~l-~~L~~L~Ls----~n~  184 (227)
T d1h6ua2         117 TQITD-VT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQ-YLSIGNAQV-SDLTP-LANL-SKLTTLKAD----DNK  184 (227)
T ss_dssp             SCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCC-EEECCSSCC-CCCGG-GTTC-TTCCEEECC----SSC
T ss_pred             ccccc-cc-hhccccchhhhhchhhhhchh--hhhccccccc-ccccccccc-ccchh-hccc-ccceecccC----CCc
Confidence            86433 32 366788999999988654332  3467788899 999999988 43333 5555 999999994    442


Q ss_pred             CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY  451 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~  451 (526)
                      . ...  .  ++.+++ +|++|+|++|+++++            | .++++++|+.|++++
T Consensus       185 l-~~l--~--~l~~l~-~L~~L~Ls~N~lt~i------------~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 I-SDI--S--PLASLP-NLIEVHLKNNQISDV------------S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C-CCC--G--GGGGCT-TCCEEECTTSCCCBC------------G-GGTTCTTCCEEEEEE
T ss_pred             c-CCC--h--hhcCCC-CCCEEECcCCcCCCC------------c-ccccCCCCCEEEeeC
Confidence            1 111  1  133444 999999999976553            4 477899999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-14  Score=135.96  Aligned_cols=220  Identities=18%  Similarity=0.206  Sum_probs=113.1

Q ss_pred             CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCc--ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130          257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE--ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG  334 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~  334 (526)
                      +..+.++...............+|++|+++++.+.  .++..+..+++|++|++++|......+..++.+++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            44555544322222223445567788888877665  3455567778888888888765555566677778888888887


Q ss_pred             CCCCCc--CCCcccCcccccceeeccccc-ccc-ccChhhhcccCCcceEEcccCCCCCC-CCCCCCCcccCcccccCcc
Q 038130          335 CSNLQR--LPDDFGNLEASNSTLYAKGTA-AKR-EVPSSIVGSNNNLYELSLDRSWGGDK-QMGLSSPITLPLDGLHTTL  409 (526)
Q Consensus       335 ~~~~~~--lp~~~~~l~~L~~~L~l~~~~-~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L  409 (526)
                      |..++.  +...+.++++|+ .|++++|. ++. .+...+...+++|+.|++    .+|. .+...+..  .+...+++|
T Consensus       105 c~~itd~~l~~l~~~~~~L~-~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l----~~~~~~i~~~~l~--~l~~~~~~L  177 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLD-ELNLSWCFDFTEKHVQVAVAHVSETITQLNL----SGYRKNLQKSDLS--TLVRRCPNL  177 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCC-EEECCCCTTCCHHHHHHHHHHSCTTCCEEEC----CSCGGGSCHHHHH--HHHHHCTTC
T ss_pred             cccccccccchhhHHHHhcc-ccccccccccccccchhhhcccccccchhhh----ccccccccccccc--ccccccccc
Confidence            765542  112234456666 77776652 211 122223333456666666    3332 11111100  011222366


Q ss_pred             cEEEccCCCCCCCCCccCCCCcc-cccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEE
Q 038130          410 TSLYLNYCGILELPDSLEKNNFE-RIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLF  488 (526)
Q Consensus       410 ~~L~L~~~~~~~lp~~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L  488 (526)
                      ++|++++|..           ++ ..+..+..+++|++|++++|..+..-                .+..+..+|+|+.|
T Consensus       178 ~~L~L~~~~~-----------itd~~~~~l~~~~~L~~L~L~~C~~i~~~----------------~l~~L~~~~~L~~L  230 (284)
T d2astb2         178 VHLDLSDSVM-----------LKNDCFQEFFQLNYLQHLSLSRCYDIIPE----------------TLLELGEIPTLKTL  230 (284)
T ss_dssp             SEEECTTCTT-----------CCGGGGGGGGGCTTCCEEECTTCTTCCGG----------------GGGGGGGCTTCCEE
T ss_pred             cccccccccC-----------CCchhhhhhcccCcCCEEECCCCCCCChH----------------HHHHHhcCCCCCEE
Confidence            6666666531           11 12234455666666666666443210                11223345677777


Q ss_pred             eccCCCCCCHHHHHHHHHHHHhhhH
Q 038130          489 DLSDNFKLDRNAVRIIVEDALQDIQ  513 (526)
Q Consensus       489 ~l~~c~~l~~~~~~~~~~~~~~~~~  513 (526)
                      ++++|  +.......+. ...|+++
T Consensus       231 ~l~~~--~~d~~l~~l~-~~lp~L~  252 (284)
T d2astb2         231 QVFGI--VPDGTLQLLK-EALPHLQ  252 (284)
T ss_dssp             ECTTS--SCTTCHHHHH-HHSTTSE
T ss_pred             eeeCC--CCHHHHHHHH-HhCcccc
Confidence            77776  4444443332 2344444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=9.9e-13  Score=117.94  Aligned_cols=164  Identities=21%  Similarity=0.267  Sum_probs=127.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..++.|++++| .+..++. +..+++|++|++++|. ++.++.+..+++|++|++++|.++.+| .+..+++|+.|++++
T Consensus        46 ~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             cCccEEECcCC-CCCCchh-HhhCCCCCEEeCCCcc-ccCccccccCccccccccccccccccc-ccccccccccccccc
Confidence            46789999985 5556654 8889999999999974 667888899999999999999999987 589999999999999


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK  390 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  390 (526)
                      |.. ..++ .+..+++|+.+++++|.. ... ..+..+++|+ .+++++|.+ ..++. +..+ ++|++|+++.|    .
T Consensus       122 ~~~-~~~~-~l~~l~~l~~l~~~~n~l-~~~-~~~~~l~~L~-~l~l~~n~l-~~i~~-l~~l-~~L~~L~Ls~N----~  189 (210)
T d1h6ta2         122 NGI-SDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLD-TLSLEDNQI-SDIVP-LAGL-TKLQNLYLSKN----H  189 (210)
T ss_dssp             SCC-CCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----C
T ss_pred             ccc-cccc-cccccccccccccccccc-ccc-cccccccccc-ccccccccc-ccccc-ccCC-CCCCEEECCCC----C
Confidence            874 3444 478899999999998654 333 4577888999 999999999 55554 5555 99999999443    2


Q ss_pred             CCCCCCCcccCcccccCcccEEEccC
Q 038130          391 QMGLSSPITLPLDGLHTTLTSLYLNY  416 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~L~~L~L~~  416 (526)
                      . ..   .+ ++.++. +|+.|+|++
T Consensus       190 i-~~---l~-~l~~l~-~L~~L~Ls~  209 (210)
T d1h6ta2         190 I-SD---LR-ALAGLK-NLDVLELFS  209 (210)
T ss_dssp             C-CB---CG-GGTTCT-TCSEEEEEE
T ss_pred             C-CC---Ch-hhcCCC-CCCEEEccC
Confidence            1 11   11 244554 999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.3e-12  Score=106.33  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             cEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC
Q 038130          258 KKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       258 ~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~  337 (526)
                      |+|++++|. ++.++.+..+.+|++|++++|.|+.+|..++.+++|++|++++|. +..+|. +..+++|++|++++|. 
T Consensus         1 R~L~Ls~n~-l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCC-CCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc-cccccccCeEECCCCc-
Confidence            678888854 567777888888888888888888888888888888888888876 445654 7888888888888854 


Q ss_pred             CCcCC--CcccCcccccceeecccccccc--ccChhhhcccCCcceE
Q 038130          338 LQRLP--DDFGNLEASNSTLYAKGTAAKR--EVPSSIVGSNNNLYEL  380 (526)
Q Consensus       338 ~~~lp--~~~~~l~~L~~~L~l~~~~~~~--~~~~~l~~~~~~L~~L  380 (526)
                      +..+|  ..++.+++|+ .+++++|.++.  ..+..+...+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~-~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLV-LLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCC-EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCC-EEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            44443  3577788888 88888887732  2234444444666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=7.4e-12  Score=111.11  Aligned_cols=143  Identities=15%  Similarity=0.283  Sum_probs=116.8

Q ss_pred             CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130          231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD  310 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  310 (526)
                      ..++.|+++++ .+..++. +..+++|++|++++|. ++.++.+.++++|++|++++|.+..++. ++++++|++|++++
T Consensus        40 ~~l~~L~l~~~-~i~~l~~-l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~  115 (199)
T d2omxa2          40 DQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  115 (199)
T ss_dssp             TTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             cCCCEEECCCC-CCCCccc-cccCCCcCcCcccccc-ccCcccccCCcccccccccccccccccc-cccccccccccccc
Confidence            57889999995 4566654 8889999999999974 6677779999999999999999998874 89999999999998


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      |.... ++ .+..+++|+.|++++|. +..++ .+..+++++ .|++.+|.+ ..++. +..+ ++|+.|++++|
T Consensus       116 ~~~~~-~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~-~L~l~~n~l-~~l~~-l~~l-~~L~~L~ls~N  182 (199)
T d2omxa2         116 NQITD-ID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQ-QLNFSSNQV-TDLKP-LANL-TTLERLDISSN  182 (199)
T ss_dssp             SCCCC-CG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS
T ss_pred             ccccc-cc-ccchhhhhHHhhhhhhh-hcccc-ccccccccc-ccccccccc-cCCcc-ccCC-CCCCEEECCCC
Confidence            87443 33 47889999999999975 44444 588899999 999999998 55553 5555 99999999443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-12  Score=116.71  Aligned_cols=202  Identities=20%  Similarity=0.268  Sum_probs=133.2

Q ss_pred             CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEec-ccCCcccC-ccccCCCCCCE
Q 038130          231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLD-GTAIEELP-SSIGCLSRLLY  305 (526)
Q Consensus       231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~-~~~i~~lp-~~i~~L~~L~~  305 (526)
                      .++++|++++| .+..+|. .|.++++|++|++++|.....++.  +..+..+++|.+. ++.+..++ ..+.++++|++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            46899999995 5666765 578899999999999887666653  7789999998876 56776554 55899999999


Q ss_pred             EeccCCccCcccCcCCCCCCCCc---EEeecCCCCCCcCC-CcccCcc-cccceeeccccccccccChhhhcccCCcceE
Q 038130          306 LYLSDCKRLKSLPSSLSQLKSLK---LLNLHGCSNLQRLP-DDFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLYEL  380 (526)
Q Consensus       306 L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~lp-~~~~~l~-~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L  380 (526)
                      |++++|.+. ..+. ...+.+++   .+...+ ..+..++ ..+.++. .++ .+++++|.+ ..++...+.. .+++.+
T Consensus       108 l~l~~~~l~-~~~~-~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~-~L~l~~n~l-~~i~~~~~~~-~~l~~~  181 (242)
T d1xwdc1         108 LLISNTGIK-HLPD-VHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESV-ILWLNKNGI-QEIHNCAFNG-TQLDEL  181 (242)
T ss_dssp             EEEESCCCC-SCCC-CTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCE-EEECCSSCC-CEECTTTTTT-CCEEEE
T ss_pred             cccchhhhc-cccc-ccccccccccccccccc-cccccccccccccccccce-eeecccccc-cccccccccc-hhhhcc
Confidence            999998743 3443 33444444   444444 4445444 4455554 566 899999999 6788777776 676666


Q ss_pred             EcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130          381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK  460 (526)
Q Consensus       381 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~  460 (526)
                      ..    ..+..+...+..  .+.++. +|++|+|++|+++.+|           +..   +.+|..|..-++..++.+|.
T Consensus       182 ~~----l~~n~l~~l~~~--~f~~l~-~L~~L~Ls~N~l~~l~-----------~~~---~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         182 NL----SDNNNLEELPND--VFHGAS-GPVILDISRTRIHSLP-----------SYG---LENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             EC----TTCTTCCCCCTT--TTTTSC-CCSEEECTTSCCCCCC-----------SSS---CTTCCEEESSSEESSSCSCC
T ss_pred             cc----ccccccccccHH--HhcCCC-CCCEEECCCCcCCccC-----------HHH---HcCCcccccCcCCCCCcCCC
Confidence            54    222222222211  133444 9999999999877655           222   34444444444445666663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=2.7e-12  Score=113.27  Aligned_cols=125  Identities=17%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccC
Q 038130          234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSD  310 (526)
Q Consensus       234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~  310 (526)
                      ++++.++ ..+..+|..+.  +++++|+|++|.....++  .|.++.+|+.|++++|.+..++ ..+..+++|++|+|++
T Consensus        11 ~~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeC-CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4566666 56677777653  678888888876544443  2677888888888888887554 4577788888888888


Q ss_pred             CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130          311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      |.+....|..+.++++|++|+|++|......|..|..+++|+ ++++++|.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~-~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCB
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc-ccccccccc
Confidence            875554455677888888888888654444445677888888 888888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-13  Score=128.04  Aligned_cols=206  Identities=20%  Similarity=0.221  Sum_probs=128.0

Q ss_pred             ccCCCcEEeeCCCCCCCc-CCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEeccCCccCcc--cCcCCCCCCCC
Q 038130          253 HLEFLKKLNLLGCSKLKR-LPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKS--LPSSLSQLKSL  327 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~-lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~i~~l~~L  327 (526)
                      ....|++|++++|..... ++. +..+++|++|+++++.+. ..+..++.+++|++|++++|..++.  +..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456889999988753322 333 677888999999988876 5566788889999999998764432  22223468899


Q ss_pred             cEEeecCCCCCCc--CCCcccC-cccccceeecccc--ccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCc
Q 038130          328 KLLNLHGCSNLQR--LPDDFGN-LEASNSTLYAKGT--AAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL  402 (526)
Q Consensus       328 ~~L~l~~~~~~~~--lp~~~~~-l~~L~~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  402 (526)
                      ++|++++|..+..  ++..+.. .+.|+ .|+++++  .++......+...+++|++|++    .+|..+......  .+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L----~~~~~itd~~~~--~l  196 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL----SDSVMLKNDCFQ--EF  196 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECCSCGGGSCHHHHHHHHHHCTTCSEEEC----TTCTTCCGGGGG--GG
T ss_pred             cccccccccccccccchhhhcccccccc-hhhhccccccccccccccccccccccccccc----ccccCCCchhhh--hh
Confidence            9999998866542  2222322 34677 8888875  2322223334444589999999    565544322211  13


Q ss_pred             ccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccccccccccc
Q 038130          403 DGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSS  478 (526)
Q Consensus       403 ~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~  478 (526)
                      ..+ ++|++|++++|. ++.           .....++++++|+.|++++|-.-+.++.+...+..|.+ +|..+..
T Consensus       197 ~~~-~~L~~L~L~~C~~i~~-----------~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i-~~~~ls~  260 (284)
T d2astb2         197 FQL-NYLQHLSLSRCYDIIP-----------ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTT  260 (284)
T ss_dssp             GGC-TTCCEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE-SCCCSCC
T ss_pred             ccc-CcCCEEECCCCCCCCh-----------HHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccccc-cCccCCC
Confidence            344 499999999975 221           11234567899999999988333333333334444454 3444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.7e-12  Score=107.60  Aligned_cols=126  Identities=17%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             ccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcC-CCCCCCCc
Q 038130          251 ILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLK  328 (526)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~  328 (526)
                      +.++..||+|+|++|. ++.++. +..+.+|++|++++|.|+.++ .+..+++|++|++++|.+ ..+|.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccc-cCCCccccccccccc
Confidence            4456677777777754 555565 355677777777777777774 477777777777777764 344443 34577777


Q ss_pred             EEeecCCCCCCcCC--CcccCcccccceeeccccccccccCh---hhhcccCCcceEEc
Q 038130          329 LLNLHGCSNLQRLP--DDFGNLEASNSTLYAKGTAAKREVPS---SIVGSNNNLYELSL  382 (526)
Q Consensus       329 ~L~l~~~~~~~~lp--~~~~~l~~L~~~L~l~~~~~~~~~~~---~l~~~~~~L~~L~l  382 (526)
                      +|++++|. +..++  ..+..+++|+ .|++++|.+ ...|.   .+...+++|+.|+.
T Consensus        91 ~L~L~~N~-i~~~~~l~~l~~l~~L~-~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNS-LVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceecccc-ccccccccccccccccc-hhhcCCCcc-ccccchHHHHHHHCCCcCeeCC
Confidence            77777754 33333  2466677777 777777777 44443   12223366666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.2e-11  Score=109.11  Aligned_cols=124  Identities=19%  Similarity=0.155  Sum_probs=88.0

Q ss_pred             CcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcc-c-CccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeec
Q 038130          257 LKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEE-L-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH  333 (526)
Q Consensus       257 L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~-l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~  333 (526)
                      .++++.+++ .++.+|. +.  .++++|+|++|.|+. + +..++++++|+.|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356777774 4666764 42  577888888888864 3 3456888888888888888777777778888888888888


Q ss_pred             CCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130          334 GCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS  385 (526)
Q Consensus       334 ~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  385 (526)
                      +|......|..|.++++|+ .|++++|.+ ..++.+.+..+++|++|++..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~-~L~L~~N~l-~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLK-TLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCC-EEECCSSCC-CEECTTSSTTCTTCCEEECTTC
T ss_pred             cccccccCHHHHhCCCccc-ccccCCccc-cccCHHHhcCCccccccccccc
Confidence            8654443445678888888 888888888 6666554443366666666443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1e-11  Score=105.98  Aligned_cols=136  Identities=18%  Similarity=0.236  Sum_probs=87.9

Q ss_pred             CCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCc-ccCcc
Q 038130          271 LPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNLE  349 (526)
Q Consensus       271 lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~  349 (526)
                      .|.+.+..++|.|+|++|.|+.+|..+..+++|++|++++|. +..++ .+..+++|++|++++|. +..+|.. +..++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~   87 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALP   87 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhccccc-ccCCCcccccccc
Confidence            455666777888888888888887666778888888888876 44554 37778888888888765 4445443 45567


Q ss_pred             cccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCC
Q 038130          350 ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKN  429 (526)
Q Consensus       350 ~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~  429 (526)
                      +|+ .|++++|.+ ..++. +.                             .+..+ ++|++|++++|.++..|.     
T Consensus        88 ~L~-~L~L~~N~i-~~~~~-l~-----------------------------~l~~l-~~L~~L~l~~N~i~~~~~-----  129 (162)
T d1a9na_          88 DLT-ELILTNNSL-VELGD-LD-----------------------------PLASL-KSLTYLCILRNPVTNKKH-----  129 (162)
T ss_dssp             TCC-EEECCSCCC-CCGGG-GG-----------------------------GGGGC-TTCCEEECCSSGGGGSTT-----
T ss_pred             ccc-cceeccccc-ccccc-cc-----------------------------ccccc-cccchhhcCCCccccccc-----
Confidence            777 777777776 33332 00                             01122 277777777776544331     


Q ss_pred             CcccccHHHhccCCCCEeccc
Q 038130          430 NFERIPESIIQLSRLVVLNLN  450 (526)
Q Consensus       430 ~l~~lp~~l~~l~~L~~L~L~  450 (526)
                       .  -+..+..+|+|+.|+-.
T Consensus       130 -~--r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         130 -Y--RLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             -H--HHHHHHHCTTCSEETTE
T ss_pred             -h--HHHHHHHCCCcCeeCCC
Confidence             0  02246778889888744

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=3.5e-11  Score=97.59  Aligned_cols=81  Identities=21%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             cEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccc
Q 038130          281 EEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGT  360 (526)
Q Consensus       281 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~  360 (526)
                      |+|++++|.++.++. ++.+++|++|++++|. +..+|..++.+++|++|++++|. ++.+| +++++++|+ .|++++|
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~-~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQ-ELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCC-EEECCSS
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccC-ccccccccC-eEECCCC
Confidence            689999999998874 8899999999999987 56788888899999999999854 55565 488888888 8888888


Q ss_pred             ccccccC
Q 038130          361 AAKREVP  367 (526)
Q Consensus       361 ~~~~~~~  367 (526)
                      .+ ..++
T Consensus        76 ~i-~~~~   81 (124)
T d1dcea3          76 RL-QQSA   81 (124)
T ss_dssp             CC-CSSS
T ss_pred             cc-CCCC
Confidence            88 4444

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.09  E-value=3.1e-13  Score=126.44  Aligned_cols=89  Identities=3%  Similarity=-0.009  Sum_probs=67.3

Q ss_pred             ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHh---
Q 038130           19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRT---   95 (526)
Q Consensus        19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~---   95 (526)
                      .++.+|||++|..++|.           ++..+..++++++||++|+|+|||++++|+.++.+ +.++|.+..+..+   
T Consensus       184 ~L~~~ea~~Lf~~~~~~-----------~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~~~~  251 (277)
T d2a5yb3         184 SLEIDECYDFLEAYGMP-----------MPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRG  251 (277)
T ss_dssp             CCCHHHHHHHHHHTSCC-----------CC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCC-----------ccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhcCc
Confidence            46778899999776543           22122238899999999999999999999999866 5678888766552   


Q ss_pred             -hCCCeEEEEEeeccchhhhhccccH
Q 038130           96 -NYGQIVVAVCYRVEPSHVRKQIGSF  120 (526)
Q Consensus        96 -~~~~~il~~sY~~Lp~~lk~~cf~y  120 (526)
                       .....|++.||++||+++| +||-+
T Consensus       252 ~~~v~~il~~sY~~L~~~lk-~c~~~  276 (277)
T d2a5yb3         252 LVGVECITPYSYKSLAMALQ-RCVEV  276 (277)
T ss_dssp             SSTTCCCSSSSSSSHHHHHH-HHHHT
T ss_pred             HHHHHHHHHHHHhcccHHHH-HHHHh
Confidence             2334577789999999999 78854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=1.9e-12  Score=114.61  Aligned_cols=126  Identities=17%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             ceEEEeccC-CCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCC
Q 038130          233 LVILNLSEY-VSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       233 l~~L~l~~~-~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~  311 (526)
                      .+.+++++. ..+..++..+..+++|++|++++|. ++.++.+.++++|++|++++|.|+.+|.....+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            345555542 3456677788889999999998865 66777788888899999999988888876666678999999888


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCCCCCcCC--CcccCcccccceeeccccccc
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP--DDFGNLEASNSTLYAKGTAAK  363 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~~L~l~~~~~~  363 (526)
                      .+ ..++ .+..+++|++|++++|. +..++  ..+..+++|+ .|++++|.+.
T Consensus       104 ~i-~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~L~~N~l~  153 (198)
T d1m9la_         104 QI-ASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAGNPLY  153 (198)
T ss_dssp             EC-CCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECSSHHH
T ss_pred             cc-cccc-cccccccccccccccch-hccccccccccCCCccc-eeecCCCccc
Confidence            64 4454 36778888899888854 34443  3477888888 8888888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.5e-09  Score=89.24  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             EEEecccCCcccCccccCCCCCCEEeccCCccCcccC-cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccc
Q 038130          282 EIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGT  360 (526)
Q Consensus       282 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~  360 (526)
                      .++.+++.+...|..+..+++|+.|++.++..+..++ ..+..+++|+.|++++|.....-|..|..+++|+ .|++++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~-~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS-RLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC-EEECCSS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc-ceeccCC
Confidence            3444444444555555555555555554443333333 2345555555555555432222233455555555 5555555


Q ss_pred             ccccccChhhhcccCCcceEEcc
Q 038130          361 AAKREVPSSIVGSNNNLYELSLD  383 (526)
Q Consensus       361 ~~~~~~~~~l~~~~~~L~~L~l~  383 (526)
                      .+ ..+|..++.. .+|+.|+++
T Consensus        91 ~l-~~l~~~~~~~-~~l~~L~L~  111 (156)
T d2ifga3          91 AL-ESLSWKTVQG-LSLQELVLS  111 (156)
T ss_dssp             CC-SCCCSTTTCS-CCCCEEECC
T ss_pred             CC-cccChhhhcc-ccccccccC
Confidence            55 4455444433 234444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5e-09  Score=88.24  Aligned_cols=100  Identities=21%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             EEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCC
Q 038130          235 ILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDC  311 (526)
Q Consensus       235 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~  311 (526)
                      .++..+ ......|..+..+++|+.|++++++.++.++  .|.++++|+.|++++|.|+.++ ..|..+++|++|+|++|
T Consensus        12 ~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            344444 3344455555556666666666555555554  2566666666666666666553 33566666666666665


Q ss_pred             ccCcccCcCCCCCCCCcEEeecCCC
Q 038130          312 KRLKSLPSSLSQLKSLKLLNLHGCS  336 (526)
Q Consensus       312 ~~~~~lp~~i~~l~~L~~L~l~~~~  336 (526)
                      . +..+|..+....+|++|++++|.
T Consensus        91 ~-l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          91 A-LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             C-CcccChhhhccccccccccCCCc
Confidence            5 33455444444456666666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-10  Score=115.96  Aligned_cols=85  Identities=21%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             hhcCcceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCc-----CC-CCC-CCCcccEEEecccCCcc----
Q 038130          228 LIVNTLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKR-----LP-EFS-SSGKIEEIWLDGTAIEE----  292 (526)
Q Consensus       228 ~~~~~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp-~~~-~l~~L~~L~L~~~~i~~----  292 (526)
                      ...+++++|++++|....    .+...+..+++|++|+|++|. ++.     +. .+. ...+|++|++++|.++.    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            345778899999874221    234556778899999999875 332     11 122 23578999999988863    


Q ss_pred             -cCccccCCCCCCEEeccCCcc
Q 038130          293 -LPSSIGCLSRLLYLYLSDCKR  313 (526)
Q Consensus       293 -lp~~i~~L~~L~~L~L~~~~~  313 (526)
                       ++..+..+++|++|++++|.+
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBC
T ss_pred             cccchhhccccccccccccccc
Confidence             456678889999999988763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=9.3e-11  Score=103.51  Aligned_cols=69  Identities=19%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             CcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130          290 IEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA  362 (526)
Q Consensus       290 i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~  362 (526)
                      ++.+|.++..|++|++|+|++|. +..++ .+..+++|++|++++|. +..+|.....++.|+ .|++++|.+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~-~L~l~~N~i  105 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLE-ELWISYNQI  105 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCC-EEECSEEEC
T ss_pred             hhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhcccc-ccccccccccccccc-ccccccccc
Confidence            44555666666666666666655 33443 35566666666666643 344444333444555 666666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.59  E-value=1.4e-09  Score=104.93  Aligned_cols=82  Identities=18%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             CcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc---------CCC-cccccccccccccccc
Q 038130          407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS---------LPK-LPFNLQGIFAHHCTAL  476 (526)
Q Consensus       407 ~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~---------lp~-~~~~L~~L~l~~c~~L  476 (526)
                      ++|+.|++++|.++.       .....+...+..+++|++|+|++|. ++.         ++. ..++|++|+++++. +
T Consensus       215 ~~L~~L~Ls~N~i~~-------~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i  285 (344)
T d2ca6a1         215 QELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-I  285 (344)
T ss_dssp             TTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-C
T ss_pred             hhhcccccccccccc-------cccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-C
Confidence            367777777765432       0122344455667777777777774 221         111 12356777776653 2


Q ss_pred             cc---------CC-CCCCCCEEeccCCCCCC
Q 038130          477 SS---------IS-YKSSTQLFDLSDNFKLD  497 (526)
Q Consensus       477 ~~---------l~-~~~~L~~L~l~~c~~l~  497 (526)
                      ..         +. .+++|++|+|++|.--.
T Consensus       286 ~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            11         11 36789999999987543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=6.8e-09  Score=99.89  Aligned_cols=93  Identities=23%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             CcccEEEccCCCCCCCCCccCCCCcc-cccHHHhccCCCCEecccCCccC----CcCC---Cccccccccccccccccc-
Q 038130          407 TTLTSLYLNYCGILELPDSLEKNNFE-RIPESIIQLSRLVVLNLNYCERL----QSLP---KLPFNLQGIFAHHCTALS-  477 (526)
Q Consensus       407 ~~L~~L~L~~~~~~~lp~~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l----~~lp---~~~~~L~~L~l~~c~~L~-  477 (526)
                      +.|+.|++++|.+..       ..+. .+...+..+++|+.|++++|..-    ..+.   ...++|++|++++|.--. 
T Consensus       186 ~~L~~L~L~~n~i~~-------~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             TTCCEEECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhcccccccccccc-------cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            489999999887643       0111 12334567899999999998521    1121   124689999999885211 


Q ss_pred             ---cC----C--CCCCCCEEeccCCCCCCHHHHHHHHHH
Q 038130          478 ---SI----S--YKSSTQLFDLSDNFKLDRNAVRIIVED  507 (526)
Q Consensus       478 ---~l----~--~~~~L~~L~l~~c~~l~~~~~~~~~~~  507 (526)
                         .+    .  ..+.|++|++++|. ++..+...+.+.
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~  296 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTV  296 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHH
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHH
Confidence               11    1  24789999999985 888887777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.4e-09  Score=106.82  Aligned_cols=264  Identities=20%  Similarity=0.197  Sum_probs=140.9

Q ss_pred             hhcCcceEEEeccCCCCCC-----CChhcc-ccCCCcEEeeCCCCCCCc-----CC-CCCCCCcccEEEecccCCccc--
Q 038130          228 LIVNTLVILNLSEYVSLNS-----LPAEIL-HLEFLKKLNLLGCSKLKR-----LP-EFSSSGKIEEIWLDGTAIEEL--  293 (526)
Q Consensus       228 ~~~~~l~~L~l~~~~~~~~-----lp~~~~-~l~~L~~L~l~~~~~~~~-----lp-~~~~l~~L~~L~L~~~~i~~l--  293 (526)
                      ...++++.|++++|. ++.     +...+. ....|++|++++|. ++.     ++ .+..+++|++|++++|.++..  
T Consensus        52 ~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~  129 (460)
T d1z7xw1          52 RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  129 (460)
T ss_dssp             HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             hcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhh
Confidence            345679999999864 321     122222 23579999999986 443     23 367888999999999877521  


Q ss_pred             ---Ccc-----------------------------ccCCCCCCEEeccCCccCcc--------c---C------------
Q 038130          294 ---PSS-----------------------------IGCLSRLLYLYLSDCKRLKS--------L---P------------  318 (526)
Q Consensus       294 ---p~~-----------------------------i~~L~~L~~L~L~~~~~~~~--------l---p------------  318 (526)
                         +..                             +.....++.++++++.....        +   +            
T Consensus       130 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  209 (460)
T d1z7xw1         130 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  209 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             hhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               110                             11234566666655432100        0   0            


Q ss_pred             ----------cCCCCCCCCcEEeecCCCCCC-----cCCCcccCcccccceeecccccccccc----ChhhhcccCCcce
Q 038130          319 ----------SSLSQLKSLKLLNLHGCSNLQ-----RLPDDFGNLEASNSTLYAKGTAAKREV----PSSIVGSNNNLYE  379 (526)
Q Consensus       319 ----------~~i~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~~L~l~~~~~~~~~----~~~l~~~~~~L~~  379 (526)
                                ..+...+.++.+++.+|....     ..+........++ .+++++|.+....    ...+... +.++.
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~-~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~  287 (460)
T d1z7xw1         210 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR-TLWIWECGITAKGCGDLCRVLRAK-ESLKE  287 (460)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC-EEECTTSCCCHHHHHHHHHHHHHC-TTCCE
T ss_pred             ccchhhhcccccccccccccccchhhccccccccchhhccccccccccc-cccccccccccccccccccccccc-ccccc
Confidence                      001223455556555543211     0111223344577 8888888763221    2223334 77888


Q ss_pred             EEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC----
Q 038130          380 LSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL----  455 (526)
Q Consensus       380 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l----  455 (526)
                      ++++.|..+......   ....+....+.|+.+++++|.++.       .....+...+...++|++|+|++|..-    
T Consensus       288 l~l~~n~i~~~~~~~---l~~~l~~~~~~L~~l~l~~~~l~~-------~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~  357 (460)
T d1z7xw1         288 LSLAGNELGDEGARL---LCETLLEPGCQLESLWVKSCSFTA-------ACCSHFSSVLAQNRFLLELQISNNRLEDAGV  357 (460)
T ss_dssp             EECTTCCCHHHHHHH---HHHHHTSTTCCCCEEECTTSCCBG-------GGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             cccccccccccccch---hhccccccccccccccccccchhh-------hhhhhcccccccccchhhhheeeecccCccc
Confidence            888443111000000   000011122378888888887543       122334444556678888888887521    


Q ss_pred             CcCC----Ccccccccccccccccccc---------CCCCCCCCEEeccCCCCCCHHHHHHHHHH
Q 038130          456 QSLP----KLPFNLQGIFAHHCTALSS---------ISYKSSTQLFDLSDNFKLDRNAVRIIVED  507 (526)
Q Consensus       456 ~~lp----~~~~~L~~L~l~~c~~L~~---------l~~~~~L~~L~l~~c~~l~~~~~~~~~~~  507 (526)
                      ..++    ...+.|+.|++++|. +..         +...++|++|+|++| .++..+...+.+.
T Consensus       358 ~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~  420 (460)
T d1z7xw1         358 RELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVES  420 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHH
T ss_pred             chhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHH
Confidence            1122    223458888888774 332         223678888888887 5777776666554

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.7e-06  Score=72.46  Aligned_cols=101  Identities=17%  Similarity=0.290  Sum_probs=81.2

Q ss_pred             CCCCCCcEEEecccccccCchH-HHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHH
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFT-SHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLD   85 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~-~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~   85 (526)
                      ..+.+|||||||+++|.-  |+ +.+...|+..|+.++.|+ ++.+|..+...|.+....+--. +++...++.+.|+..
T Consensus         8 ~~~~~yDvFisys~~D~~--~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~   85 (161)
T d1fyva_           8 QRNLQFHAFISYSGHDSF--WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHY   85 (161)
T ss_dssp             SSCCCEEEEEECCGGGHH--HHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHH
T ss_pred             CCCCeeEEEEecChhHHH--HHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHH
Confidence            567899999999999943  55 568889999999999998 8999999999999999999888 555667888888888


Q ss_pred             HHHHHHHHH-hhCCCeEEEEEeeccch
Q 038130           86 ELLKIVECR-TNYGQIVVAVCYRVEPS  111 (526)
Q Consensus        86 ~w~~i~~~~-~~~~~~il~~sY~~Lp~  111 (526)
                      |+..++... ......++|+-++..|.
T Consensus        86 E~~~a~~~~~~~~~~~lIpV~l~~~~~  112 (161)
T d1fyva_          86 ELYFAHHNLFHEGSNSLILILLEPIPQ  112 (161)
T ss_dssp             HHHTTSCCCSCSSCSSEEEEESSCCCG
T ss_pred             HHHHHHHHHHHcCCCceeEEEEecCch
Confidence            877776544 33445689998876553

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.9e-06  Score=71.25  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             CCCCCCcEEEecccccccCchHHHHHHHHHh--CCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcH
Q 038130            9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQ--KCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCL   84 (526)
Q Consensus         9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~--~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~   84 (526)
                      +...+|||||||+++|.- ...+.+...|+.  .|+.++.++ ++.+|..+...|.+....+.-. ++++..++.+.|+.
T Consensus         1 ~~~~~YDvFiSys~~D~~-~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDAY-WVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CCSCCEEEEEECCGGGHH-HHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCCEEEEEEECchhhHH-HHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            457899999999999932 134456777865  378888888 8999999999999999999888 66677888888887


Q ss_pred             HHHHHHHHHH-hhCCCeEEEEEeeccch
Q 038130           85 DELLKIVECR-TNYGQIVVAVCYRVEPS  111 (526)
Q Consensus        85 ~~w~~i~~~~-~~~~~~il~~sY~~Lp~  111 (526)
                      .|+...+... ......++|+-++..|.
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~~  107 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCch
Confidence            7776554333 34455688887776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.2e-06  Score=73.67  Aligned_cols=99  Identities=20%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             cEEEecccCCcccCccccCCCCCCEEeccCCccCc--ccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeec
Q 038130          281 EEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLK--SLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYA  357 (526)
Q Consensus       281 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l  357 (526)
                      ..+....+.+..++.....+++|++|+|++|.+..  .++..+..+++|+.|++++|. +..+++ ...+...|+ .+++
T Consensus        45 ~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~-~L~L  122 (162)
T d1koha1          45 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLE-ELWL  122 (162)
T ss_dssp             CCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCS-SCCC
T ss_pred             hhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccc-eeec
Confidence            33333334333444444567788888888876432  223334567778888888754 444433 222233566 7777


Q ss_pred             cccccccccCh------hhhcccCCcceEE
Q 038130          358 KGTAAKREVPS------SIVGSNNNLYELS  381 (526)
Q Consensus       358 ~~~~~~~~~~~------~l~~~~~~L~~L~  381 (526)
                      ++|.+......      .+...+++|+.|+
T Consensus       123 ~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         123 DGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            77777433221      2334446666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3e-05  Score=64.84  Aligned_cols=59  Identities=20%  Similarity=0.186  Sum_probs=25.0

Q ss_pred             ccCCCcEEeeCCCCCCCcCCC----CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCc
Q 038130          253 HLEFLKKLNLLGCSKLKRLPE----FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCK  312 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~lp~----~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~  312 (526)
                      .++.|++|++++|. ++.++.    +..+++|++|++++|.|+.++. ......+|+.|++++|.
T Consensus        63 ~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            34455555555543 222221    2234445555555555544433 11122234555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.70  E-value=0.00026  Score=59.11  Aligned_cols=82  Identities=21%  Similarity=0.125  Sum_probs=40.7

Q ss_pred             cCCCcEEeeCCCCCCCc--C----CCCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCcc----cC
Q 038130          254 LEFLKKLNLLGCSKLKR--L----PEFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLKS----LP  318 (526)
Q Consensus       254 l~~L~~L~l~~~~~~~~--l----p~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp  318 (526)
                      .+.|++|+|+++..+..  +    ..+.....|++|+|++|.+.     .+...+...+.|++|++++|.+...    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            35566666654332221  1    11334445566666655554     1223344456677777776654321    22


Q ss_pred             cCCCCCCCCcEEeecCC
Q 038130          319 SSLSQLKSLKLLNLHGC  335 (526)
Q Consensus       319 ~~i~~l~~L~~L~l~~~  335 (526)
                      ..+...++|++|++++|
T Consensus        94 ~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHHhCCcCCEEECCCC
Confidence            33455566666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.15  E-value=0.00099  Score=55.44  Aligned_cols=41  Identities=7%  Similarity=0.041  Sum_probs=21.6

Q ss_pred             cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130          408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC  452 (526)
Q Consensus       408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~  452 (526)
                      +|++|++++|.+..+.    ......+...+..-+.|+.|+++.+
T Consensus       101 sL~~L~l~~n~~~~~g----~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         101 SIVEFKADNQRQSVLG----NQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCSEEECCCCSSCCCC----HHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cCCEEECCCCcCCCcc----HHHHHHHHHHHHhCCCccEeeCcCC
Confidence            6667777666433210    0011234445556677777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.23  E-value=0.0028  Score=52.45  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=37.8

Q ss_pred             ccCCCcEEeeCCCCCCCcC------CCCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCc----cc
Q 038130          253 HLEFLKKLNLLGCSKLKRL------PEFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SL  317 (526)
Q Consensus       253 ~l~~L~~L~l~~~~~~~~l------p~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~l  317 (526)
                      +.+.|++|+++++..+..-      ..+...++|+.|++++|.++     .+-..+...+.|+.+++++|....    .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            3456666666653323220      01334455555666655554     122234445566666666554322    12


Q ss_pred             CcCCCCCCCCcEEeec
Q 038130          318 PSSLSQLKSLKLLNLH  333 (526)
Q Consensus       318 p~~i~~l~~L~~L~l~  333 (526)
                      ...+...++|+.+++.
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            2334445555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.43  E-value=0.0066  Score=50.05  Aligned_cols=62  Identities=16%  Similarity=0.161  Sum_probs=36.0

Q ss_pred             CCCcccEEEecc-cCCc-----ccCccccCCCCCCEEeccCCccCcc----cCcCCCCCCCCcEEeecCCCC
Q 038130          276 SSGKIEEIWLDG-TAIE-----ELPSSIGCLSRLLYLYLSDCKRLKS----LPSSLSQLKSLKLLNLHGCSN  337 (526)
Q Consensus       276 ~l~~L~~L~L~~-~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~  337 (526)
                      +.+.|++|++++ +.++     .+-..+...++|+.|++++|.+...    +-..+...++++.+++++|..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            346677777775 4454     2334455667777777777754322    222344556777777766543