Citrus Sinensis ID: 038143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS
Secondary Structure (PSIPRED)
cccHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccHHHHHHHHHHccccEEEEEccccccEEEEEEccccHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHcHHHHHHHHHHHcHcHcc
Coil and Loop (DISEMBL)
MEVNCLSKFAMTGQWDNIVQAYennpmsreakltrsgDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAskdrelis
Flexible Loop (DISEMBL)
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS
Low Complexity Region (SEG)
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS
Disordered region (IsUnstruct)
****CLSKFAMTGQWDNIVQAY****************TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM*********
Disordered Region (DISOPRED)
*EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI*
Disordered Region (DISEMBL)
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS
Disordered Region (DISPRO)
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q5ZXN6	949	Phosphocholine transferas	yes	no	0.601	0.065	0.343	0.0003

>sp|Q5ZXN6|ANKX_LEGPH Phosphocholine transferase AnkX OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=ankX PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIM--GENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
           G TALH AA  G   I+ ++++++   E+A  VL I+++ G TAFH AA  G   +   +
Sbjct: 425 GKTALHYAAECGNMQIMGKILKVVLSQEDAIKVLNIKDNHGKTAFHYAAEFGTPELISAL 484

Query: 95  ASKD 98
            + +
Sbjct: 485 TTTE 488

Virulence effector that plays a role in hijacking the host vesicular trafficking by recruiting the small guanosine triphosphatase (GTPase) Rab1 to the cytosolic face of the Legionella-containing vacuole (LCVs). Acts as a phosphocholine transferase by mediating the addition of phosphocholine to Ser residues of host RAB1 (RAB1A, RAB1B or RAB1C) and RAB35, leading to displace GDP dissociation inhibitors (GDI). Phosphocholination of target proteins also impairs accessibility to GTPase effector LepB. Can acts on both GDP-bound and GTP-bound Rab proteins.
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
255554112	786	ankyrin repeat-containing protein, putat	0.990	0.129	0.519	3e-26
255554114	712	ankyrin repeat-containing protein, putat	0.941	0.136	0.484	3e-18
359495445	835	PREDICTED: uncharacterized protein LOC10	0.941	0.116	0.422	6e-18
356546544	725	PREDICTED: uncharacterized protein LOC10	0.922	0.131	0.448	6e-18
359479725	702	PREDICTED: uncharacterized protein LOC10	0.941	0.138	0.422	7e-18
296085250	635	unnamed protein product [Vitis vinifera]	0.941	0.152	0.422	7e-18
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.922	0.062	0.422	9e-18
296085251	260	unnamed protein product [Vitis vinifera]	0.941	0.373	0.402	1e-17
359479727	663	PREDICTED: ankyrin repeat-containing pro	0.941	0.146	0.402	2e-17
359479723	768	PREDICTED: uncharacterized protein LOC10	0.941	0.126	0.412	3e-17

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 78/102 (76%)

Query: 1   MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM 60
           ME N + + AM G+WD +V+AY+ NP   + ++TRS +TA+HIA + G+T +VS+LVEI 
Sbjct: 1   MEANGIFESAMNGRWDQVVEAYKKNPSLEDGRITRSRNTAVHIAVSDGRTEVVSKLVEIF 60

Query: 61  GENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
           G+NAS VL I+N++G+T  HLAA LG+  MC+C+A++DR LI
Sbjct: 61  GDNASRVLHIKNEKGNTPLHLAAKLGDAKMCYCLAARDRSLI 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554114|ref|XP_002518097.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542693|gb|EEF44230.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 2/99 (2%)

Query: 1  MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM 60
          MEV  L +  M G W+ +  AYEN P+ ++ K+T S +TALH+A   G+T +V ELV ++
Sbjct: 1  MEVGNLFESVMRGNWNEVAVAYEN-PVVQQQKITASEETALHMAVRFGKTRVVRELVGMI 59

Query: 61 GEN-ASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKD 98
           EN A  +L++ ND+G+TA HLAAALGN  +C+C+A+KD
Sbjct: 60 EENNAFRILELSNDKGNTALHLAAALGNVPICYCIATKD 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495445|ref|XP_002274340.2| PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 19/116 (16%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM----- 60
           L K AM G+W+N+V+ YE  P +  AK+TRSGDTALHIA +  +  IV ELV+ +     
Sbjct: 22  LFKLAMQGKWNNVVKIYEKKPQAHRAKITRSGDTALHIAVSDRKEFIVEELVKCITDEEA 81

Query: 61  --------------GENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
                          E + + L+I N+RG+T  HLAA++GN  MC C+A   REL+
Sbjct: 82  KEASTSLPEGKGKQAEKSEHPLEIANERGNTPLHLAASIGNVRMCLCIAGGHRELV 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546544|ref|XP_003541685.1| PREDICTED: uncharacterized protein LOC100798360 [Glycine max]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 3/98 (3%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L K  M G+W  +V+ Y  +     AK+TR+GDTALHIA   GQ ++V +LV ++ E A 
Sbjct: 8   LFKLCMKGEWGKVVETYSKDKKVHTAKITRTGDTALHIAVIDGQYDVVRQLVRLIPEEA- 66

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELIS 103
             L+IQN+R +TA HLAA++G+  MC C+AS +  L++
Sbjct: 67  --LRIQNERKNTALHLAASMGSVGMCECIASSEPSLLN 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479725|ref|XP_003632348.1| PREDICTED: uncharacterized protein LOC100854299 [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 66/97 (68%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V   + +P + + K T SGDTALHIA + G+ ++V +LV++M     
Sbjct: 16  LISYAMQGKWEKVVDICKEDPWAHDEKTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNV 75

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
            ++ I+NDRG+T  HLAA++GN  MC C+A++  EL+
Sbjct: 76  YLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELV 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085250|emb|CBI28745.3| unnamed protein product [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 66/97 (68%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V   + +P + + K T SGDTALHIA + G+ ++V +LV++M     
Sbjct: 166 LISYAMQGKWEKVVDICKEDPWAHDEKTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNV 225

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
            ++ I+NDRG+T  HLAA++GN  MC C+A++  EL+
Sbjct: 226 YLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELV 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 66/97 (68%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V   + +P + + K T SGDTALHIA + G+ ++V +LV++M     
Sbjct: 867 LISYAMQGKWEKVVDICKEDPWAHDEKTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNV 926

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
            ++ I+NDRG+T  HLAA++GN  MC C+A++  EL+
Sbjct: 927 YLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELV 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085251|emb|CBI28746.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 68/97 (70%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V  +  +P + +A++  SGDTALH+A + G+ +IV ELVE++ E   
Sbjct: 17  LFNYAMQGKWNEVVNIWRQHPRAHKAEIVVSGDTALHVAVSEGKESIVEELVELIRETEL 76

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
           + L+++N++G+T  HLAA++GN  +C C+A K  +L+
Sbjct: 77  DALEMRNEQGNTPLHLAASMGNVPICKCLAGKHPKLV 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479727|ref|XP_002274066.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 68/97 (70%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V  +  +P + +A++  SGDTALH+A + G+ +IV ELVE++ E   
Sbjct: 17  LFNYAMQGKWNEVVNIWRQHPRAHKAEIVVSGDTALHVAVSEGKESIVEELVELIRETEL 76

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
           + L+++N++G+T  HLAA++GN  +C C+A K  +L+
Sbjct: 77  DALEMRNEQGNTPLHLAASMGNVPICKCLAGKHPKLV 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479723|ref|XP_003632347.1| PREDICTED: uncharacterized protein LOC100854208 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 65/97 (67%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM G+W+ +V   + +P + + K   SGDTALHIA + G+ ++V +LV++M     
Sbjct: 76  LISYAMQGKWEKVVDICKEDPWAHDEKTATSGDTALHIAVSDGREDVVVKLVQLMAHRNV 135

Query: 66  NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRELI 102
            ++ I+NDRG+T  HLAA++GN  MC C+A++  EL+
Sbjct: 136 YLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELV 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|E5RJ45	118	ANKRD6 "Ankyrin repeat domain-	0.805	0.703	0.347	5e-05
MGI|MGI:104752	359	Nfkbib "nuclear factor of kapp	0.495	0.142	0.436	5.7e-05
RGD|621887	359	Nfkbib "nuclear factor of kapp	0.495	0.142	0.436	5.7e-05
UNIPROTKB|E5RIJ4	175	ANKRD6 "Ankyrin repeat domain-	0.805	0.474	0.347	6.5e-05
UNIPROTKB|E5RIS1	102	ANKRD6 "Ankyrin repeat domain-	0.679	0.686	0.371	8.1e-05
UNIPROTKB|Q15653	356	NFKBIB "NF-kappa-B inhibitor b	0.495	0.143	0.418	9.2e-05
ZFIN|ZDB-GENE-051113-296	752	dzank1 "double zinc ribbon and	0.640	0.087	0.426	0.00016
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.514	0.363	0.321	0.00017
UNIPROTKB|E1C4S8	721	ANKRD6 "Uncharacterized protei	0.679	0.097	0.397	0.0002
UNIPROTKB|Q5ZXN6	949	ankX "Phosphocholine transfera	0.601	0.065	0.343	0.00022

UNIPROTKB|E5RJ45 ANKRD6 "Ankyrin repeat domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query:    10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
             A  GQ +N+VQ    N  +R A +T+ G T LH+AA  G   +V  L++     A   L 
Sbjct:    18 AYKGQTENVVQLI--NKGARVA-VTKHGRTPLHLAANKGHLPVVQILLK-----AGCDLD 69

Query:    70 IQNDRGDTAFHLAAALGNE----AMCHCMASKDRE 100
             +Q+D   TA H A  +GN     A+ H   + DR+
Sbjct:    70 VQDDGDQTALHRATVVGNTEIIAALIHEGCALDRQ 104

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

MGI|MGI:104752 Nfkbib "nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta" [Mus musculus (taxid:10090)]

 Score = 91 (37.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query:    33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENA-SNVLKIQNDRGDTAFHLAAALG 86
             +T  GDTALH+A        +  L   +G +A +  L +QND G TA HLAA LG
Sbjct:    54 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGTEYLDLQNDLGQTALHLAAILG 105

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

RGD|621887 Nfkbib "nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta" [Rattus norvegicus (taxid:10116)]

 Score = 91 (37.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query:    33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENA-SNVLKIQNDRGDTAFHLAAALG 86
             +T  GDTALH+A        +  L   +G +A +  L +QND G TA HLAA LG
Sbjct:    54 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGTEYLDLQNDLGQTALHLAAILG 105

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007165 "signal transduction" evidence=IDA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IMP

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IC

GO:0051059 "NF-kappaB binding" evidence=IC

UNIPROTKB|E5RIJ4 ANKRD6 "Ankyrin repeat domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query:    10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
             A  GQ +N+VQ    N  +R A +T+ G T LH+AA  G   +V  L++     A   L 
Sbjct:    18 AYKGQTENVVQLI--NKGARVA-VTKHGRTPLHLAANKGHLPVVQILLK-----AGCDLD 69

Query:    70 IQNDRGDTAFHLAAALGNE----AMCHCMASKDRE 100
             +Q+D   TA H A  +GN     A+ H   + DR+
Sbjct:    70 VQDDGDQTALHRATVVGNTEIIAALIHEGCALDRQ 104

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

UNIPROTKB|E5RIS1 ANKRD6 "Ankyrin repeat domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query:    10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
             A  GQ +N+VQ    N  +R A +T+ G T LH+AA  G   +V  L++     A   L 
Sbjct:    18 AYKGQTENVVQLI--NKGARVA-VTKHGRTPLHLAANKGHLPVVQILLK-----AGCDLD 69

Query:    70 IQNDRGDTAFHLAAALGN 87
             +Q+D   TA H A  +GN
Sbjct:    70 VQDDGDQTALHRATVVGN 87

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

UNIPROTKB|Q15653 NFKBIB "NF-kappa-B inhibitor beta" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query:    33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENA-SNVLKIQNDRGDTAFHLAAALG 86
             +T  GDTALH+A        +  L   +G +A +  + +QND G TA HLAA LG
Sbjct:    54 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGTEYMDLQNDLGQTALHLAAILG 105

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0004871 "signal transducer activity" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0002756 "MyD88-independent toll-like receptor signaling pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0032481 "positive regulation of type I interferon production" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035666 "TRIF-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

ZFIN|ZDB-GENE-051113-296 dzank1 "double zinc ribbon and ankyrin repeat domains 1" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
 Identities = 32/75 (42%), Positives = 46/75 (61%)

Query:    27 MSREAKLTR-SG---DTALHIAAAAGQTNIVSELVEIM-GENASNVLKIQNDRGDTAFHL 81
             + REA + + SG   +TALH AAA G   + S  VEI+ G NAS  ++ QNDRG T + +
Sbjct:   659 VQREADVNQASGPLKNTALHEAAALGDEGLKS--VEILLGCNAS--IRKQNDRGQTPYDI 714

Query:    82 AAALGNEAMCHCMAS 96
             A A G+ ++   MA+
Sbjct:   715 AVAAGSSSVLSLMAA 729

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query:    36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
             +G++ LH+A+A G   +V +++  + +    V+  QN+ G+TA H AA  G+  +C
Sbjct:    35 NGNSGLHMASANGHIAVVQKIIPYLNKE---VINAQNESGNTAMHWAALNGHAEIC 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|E1C4S8 ANKRD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
 Identities = 31/78 (39%), Positives = 43/78 (55%)

Query:    10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
             A  GQ DN+VQ    N  ++ A +T+ G T LH+AA  G  ++V  L++     A   L 
Sbjct:    18 AYKGQVDNVVQLI--NKGAKVA-VTKHGRTPLHLAAHKGHLHVVQILLK-----AGCDLD 69

Query:    70 IQNDRGDTAFHLAAALGN 87
             IQ+D   TA H AA +GN
Sbjct:    70 IQDDGDQTALHRAAVVGN 87

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

UNIPROTKB|Q5ZXN6 ankX "Phosphocholine transferase AnkX" [Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (taxid:272624)]

 Score = 103 (41.3 bits), Expect = 0.00022, P = 0.00022
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query:    37 GDTALHIAAAAGQTNIVSELVEIM--GENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
             G TALH AA  G   I+ ++++++   E+A  VL I+++ G TAFH AA  G   +   +
Sbjct:   425 GKTALHYAAECGNMQIMGKILKVVLSQEDAIKVLNIKDNHGKTAFHYAAEFGTPELISAL 484

Query:    95 ASKD 98
              + +
Sbjct:   485 TTTE 488

GO:0008152 "metabolic process" evidence=IDA

GO:0009405 "pathogenesis" evidence=IDA

GO:0030430 "host cell cytoplasm" evidence=IDA

GO:0032313 "regulation of Rab GTPase activity" evidence=IDA

GO:0044605 "phosphocholine transferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
             G T LH+AA  G   IV  L+    E  ++V   ++  G+T  HLAA  GN  +   
Sbjct: 37 DNDGRTPLHLAAKNGHLEIVKLLL----EKGADV-NARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            G T LH+AA+ G   +V  L+E         +  +++ G T  HLAA  G+  +
Sbjct: 5  EDGRTPLHLAASNGHLEVVKLLLE-----NGADVNAKDNDGRTPLHLAAKNGHLEI 55

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 32  KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
              + G+T LH+AA  G  ++V  L++         +  ++  G T  HLAA  G+  + 
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLK-----HGADVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 6e-06
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
          DTALH+AA  G   IV  L+E         +  ++  G+TA HLAA  GN  +   +   
Sbjct: 29 DTALHLAARNGNLEIVKLLLE-----HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Query: 98 D 98
           
Sbjct: 84 G 84

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
          G TALH AA +G+  +V  L+E  G + +      ++ G+TA H+AA  GN  +   
Sbjct: 1  GRTALHKAAISGRLELVKYLLE-KGVDIN----RTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
            G+T LH AA  G  +IV  L+E            +N  G TA   AA  G   
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEA-----GADPNSRNSYGVTALDPAAKNGRIE 194

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 37  GDTALHIAAAAGQT-NIVSELVEIMGENASN--VLKIQNDRGDTAFHLAAALGNEAMCHC 93
           GDT LH+AA  G       E+ +++ E  ++  V  ++++ G+T  H AA  G+  +   
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 94  M 94
           +
Sbjct: 166 L 166

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
           +G+T LH+AA  G   +V  L++  G +    L +++  G TA  LA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLK-PGVD----LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 32.5 bits (75), Expect = 0.003
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 37 GDTALHIAAAAGQTNIVSELVE 58
          G+T LH+AA  G   +V  L+E
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.92
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.91
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.9
PHA02875	413	ankyrin repeat protein; Provisional	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.84
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.83
PHA02878	477	ankyrin repeat protein; Provisional	99.83
PHA02874	434	ankyrin repeat protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
KOG0508	615	consensus Ankyrin repeat protein [General function	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
KOG0510	929	consensus Ankyrin repeat protein [General function	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.8
PHA02878	477	ankyrin repeat protein; Provisional	99.8
PHA03095	471	ankyrin-like protein; Provisional	99.8
PHA03100	480	ankyrin repeat protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.79
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.78
PHA03100	480	ankyrin repeat protein; Provisional	99.78
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.78
PHA03095	471	ankyrin-like protein; Provisional	99.77
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.77
PHA02859	209	ankyrin repeat protein; Provisional	99.77
PHA02874	434	ankyrin repeat protein; Provisional	99.77
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.77
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.76
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.76
PHA02946	446	ankyin-like protein; Provisional	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PHA02798	489	ankyrin-like protein; Provisional	99.74
KOG0510	929	consensus Ankyrin repeat protein [General function	99.74
KOG0508	615	consensus Ankyrin repeat protein [General function	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.74
PHA02876	682	ankyrin repeat protein; Provisional	99.73
PHA02946	446	ankyin-like protein; Provisional	99.73
PHA02989	494	ankyrin repeat protein; Provisional	99.72
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.72
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.71
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
PHA02876	682	ankyrin repeat protein; Provisional	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PHA02989	494	ankyrin repeat protein; Provisional	99.67
PHA02798	489	ankyrin-like protein; Provisional	99.67
PHA02917	661	ankyrin-like protein; Provisional	99.67
PHA02730	672	ankyrin-like protein; Provisional	99.66
PHA02795	437	ankyrin-like protein; Provisional	99.66
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.66
KOG0514	452	consensus Ankyrin repeat protein [General function	99.66
PHA02917	661	ankyrin-like protein; Provisional	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.65
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.64
PHA02730	672	ankyrin-like protein; Provisional	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.6
PHA02792	631	ankyrin-like protein; Provisional	99.59
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.57
PHA02792	631	ankyrin-like protein; Provisional	99.55
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.55
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.54
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.54
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.5
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.49
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.44
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.38
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
KOG0522	560	consensus Ankyrin repeat protein [General function	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
PF13606	30	Ank_3: Ankyrin repeat	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.21
PF13606	30	Ank_3: Ankyrin repeat	99.15
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.15
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.14
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.13
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.13
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.07
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.02
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.92
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.84
KOG0511	516	consensus Ankyrin repeat protein [General function	98.8
KOG0511	516	consensus Ankyrin repeat protein [General function	98.67
KOG2384	223	consensus Major histocompatibility complex protein	98.61
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.58
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.55
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.38
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.23
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.18
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	98.09
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.97
KOG2505	591	consensus Ankyrin repeat protein [General function	97.91
KOG2384	223	consensus Major histocompatibility complex protein	97.73
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.67
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.8
KOG2505	591	consensus Ankyrin repeat protein [General function	96.79
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.83
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.43
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.0
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.84
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	86.8
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.52

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.4e-26  Score=124.25  Aligned_cols=91  Identities=23%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHH-hCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      |+|||.||..|+.+++.+|++. ++..++-+|..||||||+|+..|+.++++.|+.+ +     ++++..++.|.||||+
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~-----advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSG-----ADVNATTNGGQTCLHY  112 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCC-----CCcceecCCCcceehh
Confidence            4555666666666555555542 3444555555566666666665555555555555 3     5555555555555555


Q ss_pred             HHHhCCHHHHHHHHhcCc
Q 038143           82 AAALGNEAMCHCMASKDR   99 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~   99 (103)
                      |+.+|..|++.+|++.|+
T Consensus       113 AagK~r~eIaqlLle~ga  130 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGA  130 (226)
T ss_pred             hhcCChhhHHHHHHhcCC
Confidence            555555555555555553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-24  Score=118.02  Aligned_cols=94  Identities=26%  Similarity=0.322  Sum_probs=84.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .++|||+|+..|+.+.|+.|+.+ ++.+++..+..|.|+||+|+.+|..+++++|++.|     +.++.+|..|+||||-
T Consensus        72 GWtPlhia~s~g~~evVk~Ll~r-~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g-----a~i~~kD~~~qtplHR  145 (226)
T KOG4412|consen   72 GWTPLHIAASNGNDEVVKELLNR-SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG-----ALIRIKDKQGQTPLHR  145 (226)
T ss_pred             CCchhhhhhhcCcHHHHHHHhcC-CCCCcceecCCCcceehhhhcCChhhHHHHHHhcC-----CCCcccccccCchhHH
Confidence            36899999999999999999987 36778888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|..+++++|+..++.+
T Consensus       146 AAavGklkvie~Li~~~a~~  165 (226)
T KOG4412|consen  146 AAAVGKLKVIEYLISQGAPL  165 (226)
T ss_pred             HHhccchhhHHHHHhcCCCC
Confidence            99999999999999988654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.90  E-value=1e-22  Score=102.49  Aligned_cols=85  Identities=29%  Similarity=0.359  Sum_probs=76.3

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHh
Q 038143            6 LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL   85 (103)
Q Consensus         6 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   85 (103)
                      ||.|+..|+.+.++.+++.+  ...+.    |.||||+|+..|+.+++++|++.+     .+++.+|..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENG-----ADINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTT-----TCTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhc-----ccccccCCCCCCHHHHHHHc
Confidence            79999999999999999984  33333    899999999999999999999998     88999999999999999999


Q ss_pred             CCHHHHHHHHhcCccc
Q 038143           86 GNEAMCHCMASKDREL  101 (103)
Q Consensus        86 ~~~~~~~~l~~~~~~l  101 (103)
                      |+.+++++|++.|+++
T Consensus        70 ~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADV   85 (89)
T ss_dssp             THHHHHHHHHHTTT-T
T ss_pred             CCHHHHHHHHHcCCCC
Confidence            9999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.85  E-value=8.6e-21  Score=117.73  Aligned_cols=92  Identities=17%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +++++..+..|.||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~--gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~TpL~~A  175 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIAR--GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCCGCTPLIIA  175 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCCCCCCCCHHHHH
Confidence            4688888888888888888877  5667777778888888888888888888888877     77778888888888888


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       176 ~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        176 MAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             HHcCCHHHHHHHHhCCCCC
Confidence            8888888888888887654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=111.90  Aligned_cols=55  Identities=18%  Similarity=0.103  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +|||.|+..|+.+.++.|+..  +.+.+..|..|+||||+|+..|+.+++++|++.+
T Consensus        63 TpLh~Aa~~g~~eiV~lLL~~--Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g  117 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILLFS--GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  117 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            455555555555555555544  3344444555555555555555555555555544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=111.39  Aligned_cols=91  Identities=21%  Similarity=0.133  Sum_probs=81.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||+|+..|+.+.++.++..  +.+.+..  .|.||||+|+..|+.+++++|+..+     ++++.+|..|.||||+
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~G-----advn~~d~~G~TpLh~  100 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKILLFSG-----MDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHC--cCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHH
Confidence            36899999999999999999998  4445443  4789999999999999999999988     8889999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus       101 Aa~~g~~eivk~Ll~~gadi  120 (284)
T PHA02791        101 AVDSGNMQTVKLFVKKNWRL  120 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCc
Confidence            99999999999999998765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.9e-20  Score=103.16  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             hHHHHHHHHhCCHHH---HHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHH-HhCcccccccccccCCCCc
Q 038143            3 VNCLSKFAMTGQWDN---IVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~---v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~g~t   77 (103)
                      ++|||+|+..|..+.   ++.|+..  +.+++..+ ..|.||||+|+..++.+++++|+. .+     .+++.++..|.|
T Consensus        58 ~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~~~d~~g~t  130 (166)
T PHA02743         58 RQCTHMVAWYDRANAVMKIELLVNM--GADINARELGTGNTLLHIAASTKNYELAEWLCRQLG-----VNLGAINYQHET  130 (166)
T ss_pred             CcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-----CCccCcCCCCCC
Confidence            456666666665433   4455555  44555555 356666666666666666666663 44     556666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcc
Q 038143           78 AFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        78 pl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |||+|+..++.+++++|++.+++
T Consensus       131 pL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743        131 AYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Confidence            66666666666666666666544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.84  E-value=3e-20  Score=91.82  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      -..+.+++.+|..+.|++.+.+  +.+++.. ..|++|||+|+-+|..+++++|+..|     ++++.+|++|.|||.-|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~--g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iG-----A~i~~kDKygITPLLsA   74 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE--GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIG-----ANIQDKDKYGITPLLSA   74 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc--cccHHHH-hCCcccchHhhhcchHHHHHHHHHhc-----cccCCccccCCcHHHHH
Confidence            3567889999999999999999  5566553 48999999999999999999999999     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..||.+++++|++.|++-
T Consensus        75 vwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   75 VWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             HHHhhHHHHHHHHHcCccc
Confidence            9999999999999998763

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=9.1e-20  Score=101.42  Aligned_cols=94  Identities=23%  Similarity=0.306  Sum_probs=78.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHc----CCCchhhhcCCCCCcHHHHHHHhCC----hhHHHHHHHHhCcccccccccccC
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYEN----NPMSREAKLTRSGDTALHIAAAAGQ----TNIVSELVEIMGENASNVLKIQND   73 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~----~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~   73 (103)
                      ..++||.|+..|+.+.++.++..    ..+.+++..|..|.||||+|+..++    .+++++|+..+     ++++.++.
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-----adin~~~~   95 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-----ADINAQEM   95 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCCCCc
Confidence            35799999999999999887542    1245677889999999999999998    47888999888     88888885


Q ss_pred             -CCCcHHHHHHHhCCHHHHHHHHhc-Ccc
Q 038143           74 -RGDTAFHLAAALGNEAMCHCMASK-DRE  100 (103)
Q Consensus        74 -~g~tpl~~a~~~~~~~~~~~l~~~-~~~  100 (103)
                       .|.||||+|+..++.+++++|+.. +++
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~  124 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGID  124 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence             899999999999999999999874 544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.83  E-value=2.5e-20  Score=117.10  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +.+|||.|+++|+...|..|+++  |++++..|.+|.+|||+|++.++..++-+++..+     .+++.+|..|+|||||
T Consensus       112 ~stPLHWAar~G~~~vv~lLlqh--GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~-----~d~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  112 GSTPLHWAARNGHISVVDLLLQH--GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-----ADIDLRDNNGRTPLMW  184 (600)
T ss_pred             CCCcchHHHHcCcHHHHHHHHHc--CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc-----ccCCCcCCCCCCHHHH
Confidence            34566666666666666666666  5556666666666666666666666666666665     6666666666666666


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+.+|+...++.|+..++.
T Consensus       185 Aaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHhcccHHHHHHHHhccc
Confidence            6666666556666665554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7e-20  Score=115.51  Aligned_cols=93  Identities=12%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.++..  +.+++..+..|.||||+|+..++.+++++|++.|     ++++.+|..|.||||+
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-----a~in~~d~~g~TpLh~  240 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSY--GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-----ASTDARDKCGNTPLHI  240 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHH
Confidence            46899999999999999999998  6678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHh-CCHHHHHHHHhcCccc
Q 038143           82 AAAL-GNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~-~~~~~~~~l~~~~~~l  101 (103)
                      |+.. ++.+++++|+++|+++
T Consensus       241 A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        241 SVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             HHHhcCCHHHHHHHHHcCCCC
Confidence            9976 6899999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7.9e-20  Score=114.15  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=86.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|+..  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.++..|.||||+
T Consensus       124 g~T~Lh~A~~~~~~~~v~~Ll~~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-----~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        124 LKTFLHYAIKKGDLESIKMLFEY--GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-----AYANVKDNNGESPLHN  196 (434)
T ss_pred             CccHHHHHHHCCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCHHHH
Confidence            35899999999999999999998  6678888999999999999999999999999998     8888999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus       197 A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        197 AAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             HHHcCCHHHHHHHHhCCCCC
Confidence            99999999999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=6.4e-20  Score=100.15  Aligned_cols=90  Identities=19%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHh
Q 038143            6 LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL   85 (103)
Q Consensus         6 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   85 (103)
                      +..|+..+....|+.+|+..+.. ++.+|..|.||||.|+..|+.++++.|+..|     +++..+...|+||||-|+..
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-----An~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-----ANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHcc-----CCcccccccCccchhhhhcc
Confidence            56788999999999999886543 7889999999999999999999999999988     88999999999999999999


Q ss_pred             CCHHHHHHHHhcCccc
Q 038143           86 GNEAMCHCMASKDREL  101 (103)
Q Consensus        86 ~~~~~~~~l~~~~~~l  101 (103)
                      .+.+++.+|+++|+++
T Consensus       141 nN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADV  156 (228)
T ss_pred             cchhHHHHHHhccCcc
Confidence            9999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=111.67  Aligned_cols=93  Identities=16%  Similarity=0.075  Sum_probs=84.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +.+++|.|...+..+.++.++..  +++++.+|..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~--GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-----AdIN~~d~~G~TpLh~  260 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPY--IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG-----ANVNAVMSNGYTCLDV  260 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhC--cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHH
Confidence            34677888888999999999988  6788889999999999999999999999999999     9999999999999999


Q ss_pred             HHHhC--------CHHHHHHHHhcCccc
Q 038143           82 AAALG--------NEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~--------~~~~~~~l~~~~~~l  101 (103)
                      |+..|        +.+++++|+++++++
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            99988        469999999998864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=2.7e-20  Score=114.34  Aligned_cols=92  Identities=21%  Similarity=0.265  Sum_probs=85.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+||-.||..|+++.|+.++++  +++++..++.|.|.|++||.+|+.+++++|++.|     ++++.++..|+|+||.+
T Consensus       118 StPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g-----ADvn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG-----ADVNAKSYKGNTALHDC  190 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEeeeccCchHHHHHHHHhC-----CCcchhcccCchHHHhh
Confidence            3789999999999999999988  7888899999999999999999999999999998     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|+.+++.+
T Consensus       191 aEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             hhcccHHHHHHHHhCCcee
Confidence            9999999999999988754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=4.1e-19  Score=98.54  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             chHHHHHHHHhCCHHHHHH----HHHcCCCchhhhcCCCCCcHHHHHHHhCChhH---HHHHHHHhCccccccccccc-C
Q 038143            2 EVNCLSKFAMTGQWDNIVQ----AYENNPMSREAKLTRSGDTALHIAAAAGQTNI---VSELVEIMGENASNVLKIQN-D   73 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~----ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~ll~~~~~~~~~~~~~~~-~   73 (103)
                      +.++||.|+..|+.+.+..    ++..  +..++..|..|+||||+|+..++.+.   +++|+..+     ++++.++ .
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-----adin~~d~~   92 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-----ADINARELG   92 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-----CCCCCCCCC
Confidence            3568999999999865554    3344  55677889999999999999988654   88999998     8899998 5


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHh-cCccc
Q 038143           74 RGDTAFHLAAALGNEAMCHCMAS-KDREL  101 (103)
Q Consensus        74 ~g~tpl~~a~~~~~~~~~~~l~~-~~~~l  101 (103)
                      .|.||||+|+..++.+++++|+. .++++
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~  121 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNL  121 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCc
Confidence            89999999999999999999995 56543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=9.3e-20  Score=117.38  Aligned_cols=95  Identities=24%  Similarity=0.325  Sum_probs=80.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccc---cccCCCCcH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK---IQNDRGDTA   78 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~---~~~~~g~tp   78 (103)
                      +.+|||.|+++|++++|++||+...-...+..|..|.||||+|++.||..+++.|++.|     +...   ..|.+|.||
T Consensus       306 ~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G-----A~~~~~~e~D~dg~Ta  380 (929)
T KOG0510|consen  306 EESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG-----ALFLNMSEADSDGNTA  380 (929)
T ss_pred             CCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC-----hhhhcccccccCCchh
Confidence            46899999999999999999983222456677889999999999999999999999988     4433   458999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCccc
Q 038143           79 FHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||.|++.|+..++++|+.+|+++
T Consensus       381 LH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  381 LHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             hhHHHHhccHHHHHHHHHcCCce
Confidence            99999999999999999999886

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-19  Score=106.35  Aligned_cols=92  Identities=24%  Similarity=0.286  Sum_probs=86.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ++|||.|++.|+...++.++..  +..++..+....||||+|+..|+.++++.|+.+.     ++++..|..|+||||+|
T Consensus        35 fsplhwaakegh~aivemll~r--garvn~tnmgddtplhlaaahghrdivqkll~~k-----advnavnehgntplhya  107 (448)
T KOG0195|consen   35 FSPLHWAAKEGHVAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK-----ADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             cchhhhhhhcccHHHHHHHHhc--ccccccccCCCCcchhhhhhcccHHHHHHHHHHh-----cccchhhccCCCchhhh
Confidence            6899999999999999999999  7778888888899999999999999999999998     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      |..|...+.+-|++.|+.+
T Consensus       108 cfwgydqiaedli~~ga~v  126 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAV  126 (448)
T ss_pred             hhhcHHHHHHHHHhcccee
Confidence            9999999999999988754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6e-19  Score=105.17  Aligned_cols=91  Identities=12%  Similarity=-0.014  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhc----CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccc-cCCCCcH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKL----TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQ-NDRGDTA   78 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~g~tp   78 (103)
                      ++|+.|+..|+.+.++.|++.  |++++.+    +..|.||||+|+..++.+++++|++.|     ++++.+ +..|.||
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-----ADVN~~~~~~g~Tp  107 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-----ADVNRYAEEAKITP  107 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcCcccCCCCCCH
Confidence            467778888999999999999  6666665    458999999999999999999999998     888886 4679999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCccc
Q 038143           79 FHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||+|+..++.+++++|++.|+++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdi  130 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADI  130 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=114.11  Aligned_cols=87  Identities=25%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            5 CLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         5 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      .||.|+.+++++.++.++++  +++++..+ .-+.||||+|+++|+..+++.|+++|     ++++.+|..|.+|+|+|+
T Consensus        81 lLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG-----Adpt~~D~~G~~~lHla~  153 (600)
T KOG0509|consen   81 LLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG-----ADPTLKDKQGLTPLHLAA  153 (600)
T ss_pred             ceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC-----CCCceecCCCCcHHHHHH
Confidence            44555555555555555555  33344433 34445555555555555555555555     555555555555555555


Q ss_pred             HhCCHHHHHHHHhcC
Q 038143           84 ALGNEAMCHCMASKD   98 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~   98 (103)
                      ..|+.-++-+|+..+
T Consensus       154 ~~~~~~~vayll~~~  168 (600)
T KOG0509|consen  154 QFGHTALVAYLLSKG  168 (600)
T ss_pred             HhCchHHHHHHHHhc
Confidence            555555555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=9.3e-20  Score=100.01  Aligned_cols=91  Identities=18%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             hHHHHHHHHhCCHH---HHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHH-hCcccccccccccCCCCc
Q 038143            3 VNCLSKFAMTGQWD---NIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~---~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g~t   77 (103)
                      .+|||.|+..|+.+   .++.++..  +.+++..+ ..|.||||+|+..++.+++++|+.. +     .+++.+|..|.|
T Consensus        56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-----~d~n~~~~~g~t  128 (154)
T PHA02736         56 KQCVHIVSNPDKADPQEKLKLLMEW--GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG-----VNMEILNYAFKT  128 (154)
T ss_pred             CEEEEeecccCchhHHHHHHHHHHc--CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCccccCCCCC
Confidence            45677777777654   45666777  56677777 4899999999999999999999974 6     788899999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcc
Q 038143           78 AFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        78 pl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |||+|+..|+.+++++|++.|++
T Consensus       129 pL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        129 PYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999998875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.80  E-value=4.5e-19  Score=117.67  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc-------------------
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE-------------------   62 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~-------------------   62 (103)
                      .++|||.|+..|+.++++.|+..  +.+++..|..|+||||+|+..|+.++++.|++.+..                   
T Consensus       558 G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~  635 (823)
T PLN03192        558 GRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDL  635 (823)
T ss_pred             CCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCH
Confidence            36899999999999999999987  677888899999998877776666655554432210                   


Q ss_pred             -------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 -------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 -------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                             ..+++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       636 ~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence                   122788899999999999999999999999999998875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.80  E-value=7e-19  Score=111.01  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc-------------------
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE-------------------   62 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~-------------------   62 (103)
                      ..+|||.|+..|+.+.|+.|++.  +++++..|..|+||||+|+..|+.++++.|++.+..                   
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            45789999999999999999988  667888889999999999887776655555443100                   


Q ss_pred             ----------------------------------------ccccccccccCC-CCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 ----------------------------------------NASNVLKIQNDR-GDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 ----------------------------------------~~~~~~~~~~~~-g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                                                              ..+++++.++.. |.||||+|+..|+.+++++|++.|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                                    012455666766 888888888888888888888887754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.80  E-value=5.3e-19  Score=111.18  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             chHHHHHHHHhCCH--HHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            2 EVNCLSKFAMTGQW--DNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         2 ~~~~l~~a~~~g~~--~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      ..+|||.|+..|+.  ..+..++..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||+
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~--g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-----ad~n~~~~~g~tpl  294 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRYGQTPLHYAAVFNNPRACRRLIALG-----ADINAVSSDGNTPL  294 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHH
Confidence            35789999988874  456667777  6778888999999999999999999999999998     89999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCccc
Q 038143           80 HLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+|+..|+.++++.|++.++++
T Consensus       295 ~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        295 SLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHhCCHHHHHHHHHhCCCH
Confidence            9999999999999999988764

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.80  E-value=9.4e-19  Score=110.34  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             hHHHHHHHHhCC--HHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            3 VNCLSKFAMTGQ--WDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         3 ~~~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      .+|||.|+..|+  .+.++.+++.  +++++.+|..|.||||+|+..++.+++++|++.|     ++++.+|..|.||++
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~--g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~g~tpl~  288 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSY--GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPNLVNKYGDTPLH  288 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCcHHH
Confidence            589999999999  9999999998  7778889999999999999999999999999998     899999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCccc
Q 038143           81 LAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+..++.+++++|++.|+++
T Consensus       289 ~A~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        289 IAILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             HHHHhCCHHHHHHHHhcCCCH
Confidence            999999999999999999864

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=9.6e-19  Score=97.34  Aligned_cols=91  Identities=22%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             chHHHHHHHHhCC----HHHHHHHHHcCCCchhhhcCC-CCCcHHHHHHHhCChhHHHHHHHH-hCcccccccccccCCC
Q 038143            2 EVNCLSKFAMTGQ----WDNIVQAYENNPMSREAKLTR-SGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRG   75 (103)
Q Consensus         2 ~~~~l~~a~~~g~----~~~v~~ll~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g   75 (103)
                      ..+|||.|+..|+    .+.++.++..  +.+++..+. .|+||||+|+..++.+++++|+.. +     .+++..|..|
T Consensus        60 g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~~~n~~g  132 (169)
T PHA02741         60 GQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLHFCNADN  132 (169)
T ss_pred             CCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCcCCCCC
Confidence            3689999999999    4677777777  666777774 899999999999999999999974 6     7889999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCc
Q 038143           76 DTAFHLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        76 ~tpl~~a~~~~~~~~~~~l~~~~~   99 (103)
                      .||||+|+..++.+++++|++.++
T Consensus       133 ~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741        133 KSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999987643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.8e-18  Score=107.47  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccc---------
Q 038143            1 MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQ---------   71 (103)
Q Consensus         1 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~---------   71 (103)
                      |++.+|+.|+..|+.+.++.|++.  +++++..+..|.||||+|+..++.+++++|++.|     +.++..         
T Consensus         1 ~~~~~L~~A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~t~L~   73 (413)
T PHA02875          1 MDQVALCDAILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG-----AIPDVKYPDIESELH   73 (413)
T ss_pred             CCchHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCccccCCCcccHHH
Confidence            567888888888888888888887  6667777778888888888888888888888887     333333         


Q ss_pred             -------------------------cCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           72 -------------------------NDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        72 -------------------------~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                                               +..|.||||+|+..|+.+++++|++.|++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad  127 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD  127 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence                                     34456666666666666666666666554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3e-18  Score=98.17  Aligned_cols=91  Identities=11%  Similarity=0.039  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhC--CHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHh---CChhHHHHHHHHhCcccccccccccCCCC
Q 038143            3 VNCLSKFAMTG--QWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQNDRGD   76 (103)
Q Consensus         3 ~~~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~g~   76 (103)
                      .+|||.|+..+  +.+.++.+++.  +.+++..+ ..|+||||+|+..   ++.+++++|++.|     ++++.+|..|.
T Consensus        52 ~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g-----adin~~d~~G~  124 (209)
T PHA02859         52 ETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG-----SSITEEDEDGK  124 (209)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCC-----CCCCCcCCCCC
Confidence            45666666533  56666666666  44555554 3566666665543   2456666666665     56666666666


Q ss_pred             cHHHHHHH--hCCHHHHHHHHhcCcc
Q 038143           77 TAFHLAAA--LGNEAMCHCMASKDRE  100 (103)
Q Consensus        77 tpl~~a~~--~~~~~~~~~l~~~~~~  100 (103)
                      ||||+|+.  .++.+++++|++.|++
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            66666554  2456666666666554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.78  E-value=1.3e-18  Score=79.96  Aligned_cols=54  Identities=35%  Similarity=0.461  Sum_probs=43.9

Q ss_pred             CCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHH
Q 038143           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMA   95 (103)
Q Consensus        37 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   95 (103)
                      |+||||+|+..|+.+++++|++.+     .+++.+|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-----~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-----ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-----SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999988     888899999999999999999999999885

...

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.7e-18  Score=109.20  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=75.8

Q ss_pred             hHHHHHHH--HhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhC--ChhHHHHHHHHhCcccccccccccCCCCcH
Q 038143            3 VNCLSKFA--MTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAG--QTNIVSELVEIMGENASNVLKIQNDRGDTA   78 (103)
Q Consensus         3 ~~~l~~a~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~g~tp   78 (103)
                      .+|||.|+  ..|+.+.++.+++.  +.+.+..+..|.||||+|+..+  +.+++++|++.|     ++++.++..|.||
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-----~din~~d~~g~tp  179 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDN--GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG-----VDINAKNRYGYTP  179 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-----CCcccccCCCCCH
Confidence            57888888  88888888888887  5667777888888888888888  788888888887     7778888888888


Q ss_pred             HHHHHHhCCHHHHHHHHhcCccc
Q 038143           79 FHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||+|+..|+.+++++|++.|+++
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADI  202 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCc
Confidence            88888888888888888887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.78  E-value=3.2e-18  Score=113.70  Aligned_cols=89  Identities=21%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ..+|+.|+..|+.+.++.++..  +.+++..|..|.||||+|+..|+.++++.|++.|     ++++.+|..|.||||+|
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-----adin~~d~~G~TpL~~A  598 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA-----CNVHIRDANGNTALWNA  598 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC-----CCCCCcCCCCCCHHHHH
Confidence            3689999999999999999998  7778899999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcC
Q 038143           83 AALGNEAMCHCMASKD   98 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~   98 (103)
                      +..|+.+++++|++.+
T Consensus       599 ~~~g~~~iv~~L~~~~  614 (823)
T PLN03192        599 ISAKHHKIFRILYHFA  614 (823)
T ss_pred             HHhCCHHHHHHHHhcC
Confidence            9988888888887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.77  E-value=3.3e-18  Score=107.63  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=77.9

Q ss_pred             chHHHHHHHHhC---CHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhC-ChhHHHHHHHHhCcccccccccccCCCCc
Q 038143            2 EVNCLSKFAMTG---QWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAG-QTNIVSELVEIMGENASNVLKIQNDRGDT   77 (103)
Q Consensus         2 ~~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~g~t   77 (103)
                      ..+|||.|+..|   +.+.++.+++.  +.+++..+..|.||||+|+..+ ..+++++|++.|     ++++.++..|.|
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g-----a~in~~~~~g~t  119 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG-----ADVNAKDKVGRT  119 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC-----CCCCCCCCCCCC
Confidence            357899999888   88888888888  6678888888999999999988 588999999888     888888888999


Q ss_pred             HHHHHH--HhCCHHHHHHHHhcCccc
Q 038143           78 AFHLAA--ALGNEAMCHCMASKDREL  101 (103)
Q Consensus        78 pl~~a~--~~~~~~~~~~l~~~~~~l  101 (103)
                      |||+|+  ..++.+++++|++.|+++
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~  145 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADV  145 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCC
Confidence            999988  456788889888887754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.3e-18  Score=108.31  Aligned_cols=89  Identities=27%  Similarity=0.350  Sum_probs=82.4

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHh
Q 038143            6 LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL   85 (103)
Q Consensus         6 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   85 (103)
                      |..|+..|.++.|...+.+  --+....+..|.|+||.|+..||.++|+||++.|     ++++..|.+||||||.|+.-
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g-----anVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFG-----ANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcC-----CcccCccCCCCchhhhhhhc
Confidence            5678999999999999988  3457778999999999999999999999999999     99999999999999999999


Q ss_pred             CCHHHHHHHHhcCccc
Q 038143           86 GNEAMCHCMASKDREL  101 (103)
Q Consensus        86 ~~~~~~~~l~~~~~~l  101 (103)
                      ++..+++.|++.|+.+
T Consensus       627 Nnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAV  642 (752)
T ss_pred             CchHHHHHHHhccceE
Confidence            9999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.77  E-value=7.8e-18  Score=96.48  Aligned_cols=92  Identities=9%  Similarity=0.080  Sum_probs=80.3

Q ss_pred             hHHHHHHHHh---CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHH--hCChhHHHHHHHHhCcccccccccccCCCCc
Q 038143            3 VNCLSKFAMT---GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAA--AGQTNIVSELVEIMGENASNVLKIQNDRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~t   77 (103)
                      .+|||.|+..   ++.+.++.+++.  +++++..|..|.||||+|+.  .++.+++++|++.|     ++++.+|..|.|
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~--gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-----adin~~d~~g~t  160 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDS--GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-----VSFLNKDFDNNN  160 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-----CCcccccCCCCc
Confidence            5899998864   478999999988  77888999999999999876  46789999999998     889999999999


Q ss_pred             HHHH-HHHhCCHHHHHHHHhcCccc
Q 038143           78 AFHL-AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        78 pl~~-a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+|. ++..++.+++++|++.|+++
T Consensus       161 ~Lh~~a~~~~~~~iv~~Ll~~Gadi  185 (209)
T PHA02859        161 ILYSYILFHSDKKIFDFLTSLGIDI  185 (209)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            9995 56688999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.77  E-value=6.5e-18  Score=105.61  Aligned_cols=94  Identities=19%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCC---------------------CchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNP---------------------MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMG   61 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~---------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~   61 (103)
                      .+||+.|+..|+.+.++.|+..+.                     +.+++..+..|.||||+|+..|+.+++++|++.| 
T Consensus        69 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-  147 (434)
T PHA02874         69 PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG-  147 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-
Confidence            479999999999999998887632                     2234557789999999999999999999999998 


Q ss_pred             cccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           62 ENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        62 ~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                          ++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus       148 ----ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~  183 (434)
T PHA02874        148 ----ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA  183 (434)
T ss_pred             ----CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC
Confidence                888999999999999999999999999999998754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.77  E-value=9.4e-19  Score=98.85  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CchHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            1 MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         1 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      +.++||.+|+.+|+.+.|++||..  +++++...+...++|.+|++.|..+++++|++++     .+++.-|.+|-|||.
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~--GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~-----vdVNvyDwNGgTpLl  231 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNS--GADPDALGKYRESALSLATRGGYTDIVELLLTRE-----VDVNVYDWNGGTPLL  231 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHc--CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC-----CCcceeccCCCceee
Confidence            357899999999999999999999  7778888888899999999999999999999998     889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccc
Q 038143           81 LAAALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~l~  102 (103)
                      +|++-+|..|++.|+..|+++.
T Consensus       232 yAvrgnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  232 YAVRGNHVKCVESLLNSGADVT  253 (296)
T ss_pred             eeecCChHHHHHHHHhcCCCcc
Confidence            9999999999999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=2.3e-18  Score=115.13  Aligned_cols=91  Identities=21%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+.+|+.+.|+.|+++  +++.+.++..|+||||.||..|+.+++.+|+++|     +.++..+.+|.|||+.|
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~--gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-----A~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEH--GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG-----ASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhC--CccccccCCCCCChhhHHHHcChHHHHHHHHHcC-----CCCCcccccCcchhHHH
Confidence            4799999999999999999999  7788888999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      ++.|+.++++.|+..+..
T Consensus       614 ~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  614 VRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHhcccchhhHHHhccCc
Confidence            999999999988876554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.76  E-value=1.3e-17  Score=108.66  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=82.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      .+|+.|+..|+.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-----advn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-----ADPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHH
Confidence            358899999999999999998  6778888999999999999999999999999998     899999999999999999


Q ss_pred             HhCCHHHHHHHHhc
Q 038143           84 ALGNEAMCHCMASK   97 (103)
Q Consensus        84 ~~~~~~~~~~l~~~   97 (103)
                      ..|+.+++++|+..
T Consensus       157 ~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        157 ENGFREVVQLLSRH  170 (664)
T ss_pred             HCCcHHHHHHHHhC
Confidence            99999999999987

>PHA02946 ankyin-like protein; Provisional

Probab=99.75  E-value=1.4e-17  Score=104.46  Aligned_cols=91  Identities=11%  Similarity=0.057  Sum_probs=66.2

Q ss_pred             HHHHHHHH--hCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            4 NCLSKFAM--TGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         4 ~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ++||.++.  .++.+.++.++..  +.+++..|..|.||||+|+..|+.+++++|+++|     ++++.+|..|.||||+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G-----Adin~~d~~g~TpLh~  111 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHR--GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG-----ADPNACDKQHKTPLYY  111 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHC--cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHH
Confidence            45665553  3355677777777  5667777888888888888888888888888877     7777788888888888


Q ss_pred             HHHhC--CHHHHHHHHhcCccc
Q 038143           82 AAALG--NEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~--~~~~~~~l~~~~~~l  101 (103)
                      |+..+  ..+++++|++.|+++
T Consensus       112 A~~~~~~~~e~v~lLl~~Gadi  133 (446)
T PHA02946        112 LSGTDDEVIERINLLVQYGAKI  133 (446)
T ss_pred             HHHcCCchHHHHHHHHHcCCCc
Confidence            77654  367778888777654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=5.4e-18  Score=92.70  Aligned_cols=87  Identities=21%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      -+|||.|+..|+.++|..++..  +++.+.+...||||||-||..++.+++..|+++|     ++++.......||||+|
T Consensus        98 YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhg-----aDVnA~t~g~ltpLhla  170 (228)
T KOG0512|consen   98 YTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHG-----ADVNAQTKGLLTPLHLA  170 (228)
T ss_pred             ccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhhcccchhHHHHHHhcc-----CcccccccccchhhHHh
Confidence            4799999999999999999999  7889999999999999999999999999999999     99999999999999999


Q ss_pred             HHhCC-HHHHHHHHh
Q 038143           83 AALGN-EAMCHCMAS   96 (103)
Q Consensus        83 ~~~~~-~~~~~~l~~   96 (103)
                      +...+ ...+++|+.
T Consensus       171 a~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  171 AGNRNSRDTLELLLH  185 (228)
T ss_pred             hcccchHHHHHHHhh
Confidence            98665 455666654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.74  E-value=1.5e-17  Score=105.39  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=79.9

Q ss_pred             hHHHHHHHHh-----CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhC---ChhHHHHHHHHhCcccccccccccCC
Q 038143            3 VNCLSKFAMT-----GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAG---QTNIVSELVEIMGENASNVLKIQNDR   74 (103)
Q Consensus         3 ~~~l~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~   74 (103)
                      .+|||.++..     +..+.++.|++.  +++++..|..|.||||+|+..+   +.+++++|++.|     ++++.+|..
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-----advn~~d~~  144 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG-----ADTTLLDKD  144 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-----CCccccCCC
Confidence            5789888753     668888999988  7788889999999999999875   678999999998     889999999


Q ss_pred             CCcHHHHHHHhCC---HHHHHHHHhcCccc
Q 038143           75 GDTAFHLAAALGN---EAMCHCMASKDREL  101 (103)
Q Consensus        75 g~tpl~~a~~~~~---~~~~~~l~~~~~~l  101 (103)
                      |.||||+|+..++   .+++++|++.|+++
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            9999999999887   89999999988764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=1.1e-17  Score=108.13  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +.+|||+|++.|..+++..++..  +...+.++.++.||||.|+++|+..+++.|++..   .-...+..|-.|.||+|+
T Consensus       273 g~tpLH~a~r~G~~~svd~Ll~~--Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~---~~rllne~D~~g~tpLHl  347 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPESVDNLLGF--GASINSKNKDEESPLHFAAIYGRINTVERLLQES---DTRLLNESDLHGMTPLHL  347 (929)
T ss_pred             CCchHHHHHHcCChhHHHHHHHc--CCcccccCCCCCCchHHHHHcccHHHHHHHHhCc---CccccccccccCCCchhh
Confidence            46899999999999999999999  7788889999999999999999999999999922   225667788899999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccc
Q 038143           82 AAALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l~  102 (103)
                      |++.||..+++.|+.+|+...
T Consensus       348 aa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  348 AAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             hhhcCHHHHHHHHHhcChhhh
Confidence            999999999999999998653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=4.3e-18  Score=104.82  Aligned_cols=93  Identities=20%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ..||+.|+.-|+++.|+.++.+  ++++|..+..+.|||-.||..|+.+++++|++++     ++++..|+.|.|.||+|
T Consensus        85 appLWaAsaAGHl~vVk~L~~~--ga~VN~tT~TNStPLraACfDG~leivKyLvE~g-----ad~~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   85 APPLWAASAAGHLEVVKLLLRR--GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHG-----ADPEIANRHGHTCLMIA  157 (615)
T ss_pred             CchhhHHhccCcHHHHHHHHHh--cCccccccccCCccHHHHHhcchhHHHHHHHHcC-----CCCcccccCCCeeEEee
Confidence            3578888899999999999999  6778888888899999999999999999999998     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcccc
Q 038143           83 AALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l~  102 (103)
                      +.+||.+|+++|++.|+++.
T Consensus       158 ~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  158 CYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             eccCchHHHHHHHHhCCCcc
Confidence            99999999999999998864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3.5e-17  Score=97.67  Aligned_cols=86  Identities=16%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhc-CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKL-TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+..|+.+.++.|+..  +++++.. +..|.||||+|+..++.+++++|+..|     ++++.+|..|.||+|
T Consensus        70 g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-----Adin~kd~~G~TpL~  142 (300)
T PHA02884         70 KTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG-----ADINIQTNDMVTPIE  142 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHH
Confidence            46899999999999999999998  6778775 467999999999999999999999999     999999999999999


Q ss_pred             HHHHhCCHHHHHHH
Q 038143           81 LAAALGNEAMCHCM   94 (103)
Q Consensus        81 ~a~~~~~~~~~~~l   94 (103)
                      +|+..++.+++..+
T Consensus       143 ~A~~~~~~~~~~~~  156 (300)
T PHA02884        143 LALMICNNFLAFMI  156 (300)
T ss_pred             HHHHhCChhHHHHh
Confidence            99987765554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.4e-17  Score=91.34  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHc---CCCchhhhcCCCCCcHHHHHHHhCChh---HHHHHHHHhCccccccccccc-CC
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYEN---NPMSREAKLTRSGDTALHIAAAAGQTN---IVSELVEIMGENASNVLKIQN-DR   74 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~---~~~~~~~~~~~~g~t~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~~~~-~~   74 (103)
                      ..+|||+|+..|+...+......   .........|..|.||||+|+..++.+   ++++|++.+     ++++.++ ..
T Consensus        17 g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-----adin~~~~~~   91 (154)
T PHA02736         17 GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-----ADINGKERVF   91 (154)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-----CCccccCCCC
Confidence            46899999999985433222111   111234457899999999999999864   688899988     8889998 48


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhc-Ccc
Q 038143           75 GDTAFHLAAALGNEAMCHCMASK-DRE  100 (103)
Q Consensus        75 g~tpl~~a~~~~~~~~~~~l~~~-~~~  100 (103)
                      |.||||+|+..++.+++++|+.. +++
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d  118 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVN  118 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            99999999999999999999974 554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.73  E-value=3.7e-17  Score=106.94  Aligned_cols=92  Identities=15%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC-hhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ-TNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.|++.  +.+.+..+..|.||||+|+..+. ..++++|++.|     ++++.+|..|.||||+
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~--gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-----adin~~d~~G~TpLh~  448 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDY--GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG-----ANVNSKNKDLSTPLHY  448 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-----CCCCcCCCCCChHHHH
Confidence            3555555555555555555555  34444555555555555554443 23455555555     7788899999999999


Q ss_pred             HHHhC-CHHHHHHHHhcCccc
Q 038143           82 AAALG-NEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~-~~~~~~~l~~~~~~l  101 (103)
                      |+..+ +.+++++|++.|+++
T Consensus       449 Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        449 ACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             HHHhCCcHHHHHHHHHCCCCC
Confidence            99877 689999999998764

>PHA02946 ankyin-like protein; Provisional

Probab=99.73  E-value=4.1e-17  Score=102.33  Aligned_cols=90  Identities=10%  Similarity=-0.003  Sum_probs=68.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC--hhHHHHHHHHhCccccccccc-ccCCCCcH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ--TNIVSELVEIMGENASNVLKI-QNDRGDTA   78 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~-~~~~g~tp   78 (103)
                      ..+|||+|+..|+.+.++.|++.  +++++.+|..|.||||+|+..++  .+++++|++.|     ++++. .+..|.||
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G-----adin~~~d~~g~tp  144 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG-----AKINNSVDEEGCGP  144 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-----CCcccccCCCCCcH
Confidence            36899999999999999999998  67788899999999999987664  68899999988     55553 45566666


Q ss_pred             HHHHHHhCCHHHHHHHHhcCc
Q 038143           79 FHLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~   99 (103)
                      || |+..++.+++++|++.|+
T Consensus       145 L~-aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccc
Confidence            64 344455566666655544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.72  E-value=6.9e-17  Score=102.47  Aligned_cols=66  Identities=20%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             hhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        30 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      ++..|..|+||||+|+..++.+++++|++.|     ++++.+|..|.||||+|+..|+.++++.|++.+|.
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-----adin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLG-----DDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-----CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            3456778999999999999999999999999     99999999999999999999999999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=2.1e-17  Score=110.69  Aligned_cols=92  Identities=21%  Similarity=0.187  Sum_probs=83.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+++|.+...+....+..++..  +.+++.++..|.||||.|+.+|+.++|++|++++     ++++.+++.|+||||.|
T Consensus       508 l~~lhla~~~~~v~~~~~l~~~--ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g-----Adv~ak~~~G~TPLH~A  580 (1143)
T KOG4177|consen  508 LTPLHLAADEDTVKVAKILLEH--GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG-----ADVNAKDKLGYTPLHQA  580 (1143)
T ss_pred             cchhhhhhhhhhHHHHHHHhhc--CCceehhcccccchHHHHHhcCCchHHHHhhhCC-----ccccccCCCCCChhhHH
Confidence            4577888888888888888877  7778888899999999999999999999999999     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+|+++|+++|+++
T Consensus       581 a~~G~~~i~~LLlk~GA~v  599 (1143)
T KOG4177|consen  581 AQQGHNDIAELLLKHGASV  599 (1143)
T ss_pred             HHcChHHHHHHHHHcCCCC
Confidence            9999999999999998764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.72  E-value=8.1e-18  Score=77.72  Aligned_cols=55  Identities=25%  Similarity=0.341  Sum_probs=33.1

Q ss_pred             HHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143           22 YENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus        22 l~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      |+.+ ..+++..|..|.||||+|+..|+.+++++|++.+     .+++.+|..|+||+|+|
T Consensus         2 L~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-----~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-----ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------TT---TTS--HHHH-
T ss_pred             CccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-----CCCCCCcCCCCCHHHhC
Confidence            4453 3678889999999999999999999999999887     99999999999999987

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.71  E-value=8.6e-17  Score=105.27  Aligned_cols=92  Identities=13%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             hHHHHHHHHhCC--HHHHHHHHHcCCCchhhhcCCCCCcHHHHHH-----------------------------------
Q 038143            3 VNCLSKFAMTGQ--WDNIVQAYENNPMSREAKLTRSGDTALHIAA-----------------------------------   45 (103)
Q Consensus         3 ~~~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~-----------------------------------   45 (103)
                      .+|||.|+..|+  .+.|+.|++.  +++++.++..|+||||+|+                                   
T Consensus       213 ~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~  290 (764)
T PHA02716        213 ITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT  290 (764)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence            467777777764  3666666666  5566666777777776542                                   


Q ss_pred             --HhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH--hCCHHHHHHHHhcCccc
Q 038143           46 --AAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA--LGNEAMCHCMASKDREL  101 (103)
Q Consensus        46 --~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~~~~~l~~~~~~l  101 (103)
                        ..|+.+++++|++.|     ++++.+|..|+||||+|+.  .++.+++++|++.|+++
T Consensus       291 AA~~g~leiVklLLe~G-----AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        291 LARNIDISVVYSFLQPG-----VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             HHHcCCHHHHHHHHhCC-----CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC
Confidence              234555666666665     6666777777777777653  34667777777776653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.70  E-value=2.6e-16  Score=103.06  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=64.2

Q ss_pred             hHHHHHHHH--hCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC--hhHHHHHHHHhCcccccccccccCCCCcH
Q 038143            3 VNCLSKFAM--TGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ--TNIVSELVEIMGENASNVLKIQNDRGDTA   78 (103)
Q Consensus         3 ~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~g~tp   78 (103)
                      .+|||.|+.  .++.+.++.|++.  +++++..|..|.||||+|+..|+  .+++++|++.|     ++++.++..|.||
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G-----ADVN~kD~~G~TP  250 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELG-----GDMDMKCVNGMSP  250 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-----CCCCCCCCCCCCH
Confidence            579998764  4678999999988  77888899999999999999986  48999999998     8999999999999


Q ss_pred             HHHHH
Q 038143           79 FHLAA   83 (103)
Q Consensus        79 l~~a~   83 (103)
                      ||+|+
T Consensus       251 Lh~Ai  255 (764)
T PHA02716        251 IMTYI  255 (764)
T ss_pred             HHHHH
Confidence            99753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=2.1e-17  Score=99.07  Aligned_cols=57  Identities=30%  Similarity=0.448  Sum_probs=33.1

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhc
Q 038143           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK   97 (103)
Q Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   97 (103)
                      .|.|+|++|+..|..++++.|+..+     +++|.+|.+|.|+|+.|+.+||.|++++|+..
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacg-----AdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACG-----ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHcc-----CCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            3455555555555555555555555     55566666666666666666666666655543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.69  E-value=3.8e-16  Score=102.24  Aligned_cols=91  Identities=12%  Similarity=0.020  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      ++++.++..|+.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++..+..|.||+|+|+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G-----ad~n~~~~~g~t~L~~A~  219 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEG--GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYG-----ADVNIIALDDLSVLECAV  219 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCcCccCCCCCCHHHHHH
Confidence            567888899999999999998  7778889999999999999999999999999998     888999999999999999


Q ss_pred             HhCCHHHHHHHHhcCccc
Q 038143           84 ALGNEAMCHCMASKDREL  101 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~l  101 (103)
                      ..++.++++.|++.++++
T Consensus       220 ~~~~~~ivk~Ll~~~~~~  237 (682)
T PHA02876        220 DSKNIDTIKAIIDNRSNI  237 (682)
T ss_pred             HcCCHHHHHHHHhcCCCC
Confidence            999999999998876543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1.7e-15  Score=79.63  Aligned_cols=90  Identities=27%  Similarity=0.306  Sum_probs=81.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.+..++..  +...+..+..|.+|+|.|+..+..++++.++..+     ..++..+..|.||+|+|
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-----~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-----ADVNARDKDGNTPLHLA   80 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHHH
Confidence            5899999999999999999988  4444677889999999999999999999999987     67788889999999999


Q ss_pred             HHhCCHHHHHHHHhcCc
Q 038143           83 AALGNEAMCHCMASKDR   99 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~   99 (103)
                      +..++.+++++|++.+.
T Consensus        81 ~~~~~~~~~~~L~~~~~   97 (126)
T cd00204          81 ARNGNLDVVKLLLKHGA   97 (126)
T ss_pred             HHcCcHHHHHHHHHcCC
Confidence            99999999999998753

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.67  E-value=6.4e-16  Score=98.12  Aligned_cols=92  Identities=11%  Similarity=0.000  Sum_probs=62.3

Q ss_pred             hHHHHHHHHhC------CHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHh---CChhHHHHHHHHhCccccccc-cccc
Q 038143            3 VNCLSKFAMTG------QWDNIVQAYENNPMSREAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVL-KIQN   72 (103)
Q Consensus         3 ~~~l~~a~~~g------~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~-~~~~   72 (103)
                      .+|||.|+..+      ..+.++.|++.  |++++..+..|.||||.|+..   ++.+++++|++.|     +++ +.+|
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-----adin~~~d  142 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-----INVNDVKN  142 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-----CCcccccC
Confidence            46777666543      34566666766  566677777777777766544   4567777777777     677 6777


Q ss_pred             CCCCcHHHHHHHh--CCHHHHHHHHhcCccc
Q 038143           73 DRGDTAFHLAAAL--GNEAMCHCMASKDREL  101 (103)
Q Consensus        73 ~~g~tpl~~a~~~--~~~~~~~~l~~~~~~l  101 (103)
                      ..|.||||+|+..  ++.+++++|++.|+++
T Consensus       143 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989        143 SRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             CCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            7777777776543  4677777777777654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.67  E-value=6.7e-16  Score=97.91  Aligned_cols=68  Identities=13%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             hhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           29 REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        29 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +++.+|..|.||||+|+..++.+++++|++.|     ++++.+|..|.|||++|+..++.++++.|++.+|+.
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-----Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-----GDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-----CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            34557788999999999999999999999999     999999999999999999999999999999998764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.67  E-value=6.9e-16  Score=100.51  Aligned_cols=93  Identities=9%  Similarity=0.046  Sum_probs=74.4

Q ss_pred             chHHHHHHHHh---CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCCh----------------------------
Q 038143            2 EVNCLSKFAMT---GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQT----------------------------   50 (103)
Q Consensus         2 ~~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------------------   50 (103)
                      ..+|||.|+..   |+.+.|+.|++.  +++++..+..|+||||+|+..|+.                            
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~  109 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYM  109 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHH
Confidence            36899997555   889999999988  777888899999999998887763                            


Q ss_pred             -------hHHHHHHHHhCcccccccccccCCCCcHHHHH--HHhCCHHHHHHHHhcCccc
Q 038143           51 -------NIVSELVEIMGENASNVLKIQNDRGDTAFHLA--AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        51 -------~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a--~~~~~~~~~~~l~~~~~~l  101 (103)
                             +++++|++.|     ++++.+|..|.||||.+  +..|+.+++++|+++|+++
T Consensus       110 a~~~~~~e~vk~Ll~~G-----adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917        110 KSKNVDVDLIKVLVEHG-----FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HhhcCCHHHHHHHHHcC-----CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence                   3334444444     88889999999999954  3578999999999999865

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=1.2e-15  Score=98.67  Aligned_cols=94  Identities=11%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             hHHHHHHHHhCC----HHHHHHHHHcCCCchhhhcCCCCCcHHHH---HHHhC---------ChhHHHHHHHHhCccccc
Q 038143            3 VNCLSKFAMTGQ----WDNIVQAYENNPMSREAKLTRSGDTALHI---AAAAG---------QTNIVSELVEIMGENASN   66 (103)
Q Consensus         3 ~~~l~~a~~~g~----~~~v~~ll~~~~~~~~~~~~~~g~t~l~~---a~~~~---------~~~~~~~ll~~~~~~~~~   66 (103)
                      .+|||.|+..+.    .+.++.|++++...+++..|..|.||||.   +...+         ..+++++|+.+|     +
T Consensus       379 ~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-----A  453 (672)
T PHA02730        379 NYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-----D  453 (672)
T ss_pred             CcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-----c
Confidence            578998888875    78888888884333577778888998884   33222         124688888888     8


Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           67 VLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        67 ~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +++.+|..|.||||+|+..++.+++++|++.|+++
T Consensus       454 DINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI  488 (672)
T PHA02730        454 DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV  488 (672)
T ss_pred             chhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            88888999999999999988899999999888764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.66  E-value=9.3e-16  Score=95.20  Aligned_cols=92  Identities=9%  Similarity=-0.019  Sum_probs=60.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhc-----CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKL-----TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTA   78 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tp   78 (103)
                      +|+|.|+..|+.+.++.++.++.. ..+..     +..+.+++|.|+..++.+++++|+.+|     ++++.+|..|.||
T Consensus       151 t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-----ADIN~kD~~G~Tp  224 (437)
T PHA02795        151 NAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-----EDINQLDAGGRTL  224 (437)
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-----CCcCcCCCCCCCH
Confidence            455555555555555555555211 11111     122445555555555555666666555     7889999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCccc
Q 038143           79 FHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||+|+..|+.+++++|++.|+++
T Consensus       225 Lh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        225 LYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999999865

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=2.7e-16  Score=97.66  Aligned_cols=89  Identities=21%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHh
Q 038143            6 LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL   85 (103)
Q Consensus         6 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   85 (103)
                      +..|+..|+.+.+..++..  +...+..+..|.|+||.++...+.+|++++++++     ++++.+|..|+||+|.|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~g-----a~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVENG-----ANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHHhc-----CCccccccccCCcchhhccc
Confidence            3445566666666666666  3445556666666666666666666666666666     66666666666666666666


Q ss_pred             CCHHHHHHHHhcCccc
Q 038143           86 GNEAMCHCMASKDREL  101 (103)
Q Consensus        86 ~~~~~~~~l~~~~~~l  101 (103)
                      |+..++++|++.|+++
T Consensus       117 g~~~i~~~li~~gA~~  132 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANL  132 (527)
T ss_pred             ccHHHHHHHHHhhhhh
Confidence            6666666666666543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=6.3e-16  Score=92.81  Aligned_cols=89  Identities=21%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      -++|+.|+..|+.+.|+.||..  ++++|..|..|.|+|+.|+..||.++++.|+...    .++....|.+|.|+|.+|
T Consensus       341 QTALMLAVSHGr~d~vk~LLac--gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p----~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLAC--GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP----SCDISLTDVDGSTALSIA  414 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHc--cCCCccccCCccHHHhhhhhhChHHHHHHHhccC----cccceeecCCCchhhhhH
Confidence            4789999999999999999999  7889999999999999999999999999999873    478889999999999999


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      -..||.||.-+|..+
T Consensus       415 leagh~eIa~mlYa~  429 (452)
T KOG0514|consen  415 LEAGHREIAVMLYAH  429 (452)
T ss_pred             HhcCchHHHHHHHHH
Confidence            999999998877654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.65  E-value=1.6e-15  Score=98.86  Aligned_cols=80  Identities=20%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH-hCCHHHHHH
Q 038143           15 WDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA-LGNEAMCHC   93 (103)
Q Consensus        15 ~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~-~~~~~~~~~   93 (103)
                      .+.++.++..  +++++.+|..|+||||+|+..++.+++++|++.|     ++++.++..|.||||+|+. .++.+++++
T Consensus       432 ~~~v~~Ll~~--GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~G-----Adin~~d~~G~T~L~~A~~~~~~~~iv~~  504 (661)
T PHA02917        432 LSTINICLPY--LKDINMIDKRGETLLHKAVRYNKQSLVSLLLESG-----SDVNIRSNNGYTCIAIAINESRNIELLKM  504 (661)
T ss_pred             HHHHHHHHHC--CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHHHHHhCCCHHHHHH
Confidence            5667888888  6788999999999999999999999999999999     9999999999999999996 678999999


Q ss_pred             HHhcCccc
Q 038143           94 MASKDREL  101 (103)
Q Consensus        94 l~~~~~~l  101 (103)
                      |+++++++
T Consensus       505 LL~~ga~i  512 (661)
T PHA02917        505 LLCHKPTL  512 (661)
T ss_pred             HHHcCCCh
Confidence            99998864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.65  E-value=7.8e-16  Score=70.59  Aligned_cols=53  Identities=26%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELV   57 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll   57 (103)
                      +++||.|+..|+.+.++.+++.  +.+++..|..|+||||+|+..|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            6899999999999999999999  6778888999999999999999999999986

...

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.64  E-value=9.5e-16  Score=86.85  Aligned_cols=91  Identities=19%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      -++|+..++...+++.+..+...    .+|.+|..|.|||.||+.+|++.++++|++.|     ++++....+..|+|.+
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G-----Adp~~lgk~resALsL  199 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSG-----ADPDALGKYRESALSL  199 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcC-----CChhhhhhhhhhhHhH
Confidence            45778888888887776655544    47789999999999999999999999999999     9999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |++.|..+++++|+++++++
T Consensus       200 At~ggytdiV~lLL~r~vdV  219 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDV  219 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCc
Confidence            99999999999999998875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.63  E-value=3.9e-15  Score=96.37  Aligned_cols=90  Identities=10%  Similarity=0.032  Sum_probs=74.5

Q ss_pred             chHHHHHHHHhC---CHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhC--ChhHHHHHHHHhCcccccccccccCCCC
Q 038143            2 EVNCLSKFAMTG---QWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAG--QTNIVSELVEIMGENASNVLKIQNDRGD   76 (103)
Q Consensus         2 ~~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~g~   76 (103)
                      ..+|||.|+..|   +.+.|+.|+++  |++++.+|..|+||||+|+..+  +.+++++|++.|   ..++++..+.-+.
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~--GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~---~~~~~~~~~~~~d  115 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSR--GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSY---SNASNELTSNIND  115 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhC--CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcC---CCCCcccccccCC
Confidence            358999999887   48999999988  7788889999999999988866  688999999986   2255577777788


Q ss_pred             cHHHHHHH--hCCHHHHHHHHh
Q 038143           77 TAFHLAAA--LGNEAMCHCMAS   96 (103)
Q Consensus        77 tpl~~a~~--~~~~~~~~~l~~   96 (103)
                      +|++.++.  .++.+++++|++
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~  137 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIV  137 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHH
Confidence            89988877  778899999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=7.2e-15  Score=84.13  Aligned_cols=92  Identities=22%  Similarity=0.257  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC-----hhHHHHHHHHhCccccc---ccccccCC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ-----TNIVSELVEIMGENASN---VLKIQNDR   74 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~~---~~~~~~~~   74 (103)
                      ..+++.++..++.+.+..++..  +..++..+..|.|+||+|+..++     .++++.|++.+     +   ..+.+|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g-----~~~~~~~~~~~~  146 (235)
T COG0666          74 RLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG-----ADLDVNNLRDED  146 (235)
T ss_pred             cCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcC-----CCCCCccccCCC
Confidence            4678889999998888888888  66678889999999999999999     89999999988     5   56667899


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           75 GDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        75 g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |.||+|+|+..|+.++++.|++.+++.
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~  173 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADP  173 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCC
Confidence            999999999999999999998887653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=3.1e-15  Score=75.09  Aligned_cols=63  Identities=30%  Similarity=0.316  Sum_probs=55.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN   72 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   72 (103)
                      .+|||+|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|+++|     .+++.+|
T Consensus        27 ~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~n   89 (89)
T PF12796_consen   27 NTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNLEIVKLLLEHG-----ADVNIRN   89 (89)
T ss_dssp             SBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTT-----T-TTSS-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcC
Confidence            5799999999999999999998  6678888999999999999999999999999998     7666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-15  Score=98.31  Aligned_cols=92  Identities=23%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .++.||+|+.+|+...++.+++.  +..+..+|..|.+|||+|++.|+.+++++++...     ...+..+..|.||||.
T Consensus        49 gfTalhha~Lng~~~is~llle~--ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-----d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   49 GFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-----DILNAVNIENETPLHL  121 (854)
T ss_pred             chhHHHHHHhcCchHHHHHHhcc--hhhhhhhhccCcceEEehhhcCcchHHHHHHhcc-----cCCCcccccCcCccch
Confidence            45778888888888777777776  4456666777788888888888888888877776     6677777778888888


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      ++..||.+++.+|++.+++
T Consensus       122 aaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             hhhhcchHHHHHHHhcCCC
Confidence            8888888888888877654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=2.7e-15  Score=74.43  Aligned_cols=75  Identities=17%  Similarity=0.032  Sum_probs=67.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .|+|||+|+-+|+.+.+++++..  +++++.+|+.|.|||--|+..||.+++++|++.|     ++.+.+..+|.+.+..
T Consensus        34 gR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~G-----Adrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   34 GRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNG-----ADRTIHAPDGTALIEA  106 (117)
T ss_pred             CcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcC-----cccceeCCCchhHHhh
Confidence            37899999999999999999999  8889999999999999999999999999999999     8888888888877654


Q ss_pred             HH
Q 038143           82 AA   83 (103)
Q Consensus        82 a~   83 (103)
                      +-
T Consensus       107 te  108 (117)
T KOG4214|consen  107 TE  108 (117)
T ss_pred             cc
Confidence            43

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=2.2e-15  Score=93.72  Aligned_cols=87  Identities=22%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++||.+|...+.++|.++++.  +.+++..|..||||||.|+..|+..++++++..|     +++...|..|..|+.++
T Consensus        74 lTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~g-----A~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHG-----ANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhcccccHHHHHHHHHhh-----hhhhhccCCCCCccccc
Confidence            4789999999999999999999  7889999999999999999999999999999999     88999999999999998


Q ss_pred             HHhCCHHHHHHHHh
Q 038143           83 AALGNEAMCHCMAS   96 (103)
Q Consensus        83 ~~~~~~~~~~~l~~   96 (103)
                      ......++.+..+.
T Consensus       147 e~ea~~~~l~~~~~  160 (527)
T KOG0505|consen  147 EDEATLDVLETEMA  160 (527)
T ss_pred             cCcchhHHHHHHHH
Confidence            88776666655443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.59  E-value=1.7e-14  Score=92.74  Aligned_cols=92  Identities=5%  Similarity=-0.015  Sum_probs=79.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCC--CcHHHHHHHhCCh---hHHHHHHHHhCcccccccccccCCCCc
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSG--DTALHIAAAAGQT---NIVSELVEIMGENASNVLKIQNDRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~~~g~t   77 (103)
                      ...++.|+..|+.+.++.|++.  |++++..|..|  .||||+|......   +++++++.+|     ++++.+|..|.|
T Consensus       340 ~n~~~~Aa~~gn~eIVelLIs~--GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-----ADIN~kD~~G~T  412 (631)
T PHA02792        340 INKYFQKFDNRDPKVVEYILKN--GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI-----DDINKIDKHGRS  412 (631)
T ss_pred             chHHHHHHHcCCHHHHHHHHHc--CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC-----CccccccccCcc
Confidence            3568899999999999999999  77788777664  6899987766654   3578888888     899999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCccc
Q 038143           78 AFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        78 pl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |||+|+..++.+++++|+++|+++
T Consensus       413 PLh~Aa~~~n~eivelLLs~GADI  436 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGADI  436 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999999999998864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=3.8e-14  Score=83.23  Aligned_cols=91  Identities=19%  Similarity=0.174  Sum_probs=80.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccc-ccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~g~tpl~~   81 (103)
                      .+||+.++-.|+.+....||+.  --+++..|.+|.|+|..|+..|+.++++.+++.|     +++|. ++..+.||||.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g-----aDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG-----ADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC-----CCcCcccccccccHHHH
Confidence            4789999999999999999988  4458889999999999999999999999999998     77766 44678899999


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..|+.++.+.|++.|++
T Consensus        86 AALSGn~dvcrllldaGa~  104 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGAR  104 (396)
T ss_pred             HHHcCCchHHHHHHhccCc
Confidence            9999999999999998875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.55  E-value=4.6e-14  Score=90.83  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=76.4

Q ss_pred             hHHHHHHHHhCCHH---HHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            3 VNCLSKFAMTGQWD---NIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         3 ~~~l~~a~~~g~~~---~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      .+|||.|+.....+   .++.++..  +++++..|..|.||||+|+..++.+++++|++.|     ++++.++..|.||+
T Consensus       375 ~TpLh~A~~n~~~~v~~IlklLIs~--GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~G-----ADIN~kD~~G~TpL  447 (631)
T PHA02792        375 IMPLFPTLSIHESDVLSILKLCKPY--IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNG-----ADINITTKYGSTCI  447 (631)
T ss_pred             hhHHHHHHHhccHhHHHHHHHHHhc--CCccccccccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHH
Confidence            47899877666543   35666777  6778899999999999999999999999999998     99999999999999


Q ss_pred             HHHHH--h--------CCHHHHHHHHhcCccc
Q 038143           80 HLAAA--L--------GNEAMCHCMASKDREL  101 (103)
Q Consensus        80 ~~a~~--~--------~~~~~~~~l~~~~~~l  101 (103)
                      ++|..  .        ...++++.|++++|.+
T Consensus       448 ~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        448 GICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99976  2        2256788999988764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.55  E-value=1.2e-14  Score=85.50  Aligned_cols=76  Identities=22%  Similarity=0.269  Sum_probs=70.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +-+|||.|+..|+.+.|..+++.  ..+++..+..|.||||+||..|...+.+-|+..|     +.++..|++|.||+..
T Consensus        67 ddtplhlaaahghrdivqkll~~--kadvnavnehgntplhyacfwgydqiaedli~~g-----a~v~icnk~g~tpldk  139 (448)
T KOG0195|consen   67 DDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCG-----AAVNICNKKGMTPLDK  139 (448)
T ss_pred             CCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCchhhhhhhcHHHHHHHHHhcc-----ceeeecccCCCCchhh
Confidence            35799999999999999999999  7789999999999999999999999999999998     9999999999999987


Q ss_pred             HHH
Q 038143           82 AAA   84 (103)
Q Consensus        82 a~~   84 (103)
                      |.-
T Consensus       140 akp  142 (448)
T KOG0195|consen  140 AKP  142 (448)
T ss_pred             hch
Confidence            653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.54  E-value=2.8e-14  Score=94.37  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC--------------CCCCcHHHHHHHhCChhHHHHHHHHhCcccccc
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLT--------------RSGDTALHIAAAAGQTNIVSELVEIMGENASNV   67 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~   67 (103)
                      +.+|||.|+..|+.++|+.|++.  +++++..+              ..|.||||.|+..++.+++++|++.+     ++
T Consensus       128 G~TpLhlAa~~~~~eiVklLL~~--GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-----ad  200 (743)
T TIGR00870       128 GITALHLAAHRQNYEIVKLLLER--GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-----AD  200 (743)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhC--CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-----cc
Confidence            46899999999999999999998  44444321              35899999999999999999999988     89


Q ss_pred             cccccCCCCcHHHHHHHhC
Q 038143           68 LKIQNDRGDTAFHLAAALG   86 (103)
Q Consensus        68 ~~~~~~~g~tpl~~a~~~~   86 (103)
                      ++.+|..|+||+|+|+..+
T Consensus       201 in~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhh
Confidence            9999999999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.54  E-value=7.9e-14  Score=92.27  Aligned_cols=99  Identities=18%  Similarity=0.153  Sum_probs=76.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHH-HHHHhCChhHHHHHHHHhC-cc-----------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALH-IAAAAGQTNIVSELVEIMG-EN-----------------   63 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~ll~~~~-~~-----------------   63 (103)
                      ..+++.|+..|+.+.++.+++..++.+++..|..|+|||| .|+..++.++++.|++.+. +.                 
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v   97 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAV   97 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHH
Confidence            5678899999999999999887556677778889999999 7777878888888877762 10                 


Q ss_pred             --------ccc-----------ccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           64 --------ASN-----------VLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        64 --------~~~-----------~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                              ...           .....+..|.||||+|+..|+.+++++|+++|+++
T Consensus        98 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv  154 (743)
T TIGR00870        98 EAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV  154 (743)
T ss_pred             HHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence                    000           00112346999999999999999999999998875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.53  E-value=2e-13  Score=71.73  Aligned_cols=86  Identities=23%  Similarity=0.296  Sum_probs=77.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+++|.|+..++.+.++.++..  +...+..+..|.||+|+|+..++.+++++|+..+     ...+..+..|.||++.|
T Consensus        41 ~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          41 RTPLHLAAKNGHLEIVKLLLEK--GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-----ADVNARDKDGRTPLHLA  113 (126)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCcccCCCCCCHHHHH
Confidence            4799999999999999999998  4456677889999999999999999999999987     77788889999999999


Q ss_pred             HHhCCHHHHHHHH
Q 038143           83 AALGNEAMCHCMA   95 (103)
Q Consensus        83 ~~~~~~~~~~~l~   95 (103)
                      ...++.+++++|+
T Consensus       114 ~~~~~~~~~~~Ll  126 (126)
T cd00204         114 AKNGHLEVVKLLL  126 (126)
T ss_pred             HhcCCHHHHHHhC
Confidence            9999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=8.1e-14  Score=79.78  Aligned_cols=92  Identities=25%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             chHHHHHHHHhCC-----HHHHHHHHHcCCC-chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCC
Q 038143            2 EVNCLSKFAMTGQ-----WDNIVQAYENNPM-SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG   75 (103)
Q Consensus         2 ~~~~l~~a~~~g~-----~~~v~~ll~~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g   75 (103)
                      ..+++|.|+..|+     .+.++.++..+.. ...+..+..|.||||+|+..|+.++++.++..+     ++++..+..|
T Consensus       106 g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~g  180 (235)
T COG0666         106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSYG  180 (235)
T ss_pred             CCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccCC
Confidence            3589999999999     9999999999431 256667999999999999999999999999998     8888899999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcC
Q 038143           76 DTAFHLAAALGNEAMCHCMASKD   98 (103)
Q Consensus        76 ~tpl~~a~~~~~~~~~~~l~~~~   98 (103)
                      .|++++|+..++.++++.+++.+
T Consensus       181 ~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         181 VTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999998853

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.50  E-value=2.4e-14  Score=92.41  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ..|||+|++.|+.+.++.++.+  +...+....+|.||||.|++.|+.+++.+|+.++     +++-++|..+.|++.+|
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q--~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~-----adp~i~nns~~t~ldlA  155 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQ--TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKN-----ADPFIRNNSKETVLDLA  155 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhc--ccCCCcccccCcCccchhhhhcchHHHHHHHhcC-----CCccccCcccccHHHHH
Confidence            3689999999999999999999  4668888999999999999999999999999999     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      ++.|..+++++|++.
T Consensus       156 ~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  156 SRFGRAEVVQMLLQK  170 (854)
T ss_pred             HHhhhhHHHHHHhhh
Confidence            999999999999886

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.49  E-value=1.5e-13  Score=89.12  Aligned_cols=89  Identities=22%  Similarity=0.203  Sum_probs=83.1

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccc--cccccCCCCcHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNV--LKIQNDRGDTAF   79 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~--~~~~~~~g~tpl   79 (103)
                      ...||-.|+..++.++++.|+++  +++++..|..|+|.||..+..-..++-..+++.+     +.  ...+|..|.|||
T Consensus       240 GEyPLSfAAC~nq~eivrlLl~~--gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-----a~~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLLAH--GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG-----ANALEHVRNNQGLTPL  312 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHHhc--CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC-----CCccccccccCCCChH
Confidence            45799999999999999999998  8899999999999999999998889999999998     55  889999999999


Q ss_pred             HHHHHhCCHHHHHHHHhc
Q 038143           80 HLAAALGNEAMCHCMASK   97 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~   97 (103)
                      .+|++.|..++.+.+++.
T Consensus       313 tLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  313 TLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHhhhHHHHHHHHHh
Confidence            999999999999999887

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.46  E-value=2.8e-13  Score=84.35  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=78.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ..||..++.|+.+....+|..  |+..|+.+ ..|.||||.|++.|+..-+++|+-+|     +++..+|..|.||+.+|
T Consensus       135 rQLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-----AD~~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-----ADPGAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-----CCCCCCCCCCCcHHHHH
Confidence            478999999999999999999  55555554 67899999999999999999999999     99999999999999999


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      ...||.++.+.|++.
T Consensus       208 R~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  208 RQGGHHELAERLVEI  222 (669)
T ss_pred             HhcCchHHHHHHHHH
Confidence            999999999888764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3e-13  Score=84.91  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccc-ccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~g~tpl~~   81 (103)
                      -++||.|+.-|+.++|++|+..  ++++|..|..||||||.|+..++..++++|++.|     +.+-. .-.++.|+..-
T Consensus       584 ITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~G-----aavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  584 ITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAASCNNVPMCKQLVESG-----AAVFASTLSDMETAAEK  656 (752)
T ss_pred             hhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhhhcCchHHHHHHHhcc-----ceEEeeecccccchhhh
Confidence            3789999999999999999999  8899999999999999999999999999999998     43333 33577788765


Q ss_pred             HHH--hCCHHHHHHHHh
Q 038143           82 AAA--LGNEAMCHCMAS   96 (103)
Q Consensus        82 a~~--~~~~~~~~~l~~   96 (103)
                      +-.  .|...|..||..
T Consensus       657 Cee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  657 CEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cchhhhhHHHHHHHHHH
Confidence            443  567788888854

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.44  E-value=1.7e-13  Score=84.95  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      .++++|+..|++..++++...  +.+.+..|...+|.||.|+..|+++++++|++.    ++.+++.+|..|+|||.-|.
T Consensus       508 i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~----~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA----CKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHH----HcCCCChhhccCCCcchHhH
Confidence            468999999999999999999  677889999999999999999999999999987    34788899999999999999


Q ss_pred             HhCCHHHHHHHHhc
Q 038143           84 ALGNEAMCHCMASK   97 (103)
Q Consensus        84 ~~~~~~~~~~l~~~   97 (103)
                      ..+|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            99999999998653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.38  E-value=3.7e-12  Score=80.66  Aligned_cols=90  Identities=18%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCC--chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPM--SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..|..|+...++..+..||.++..  .+...-+..|+|+||+||+.|++.+.+.|+.++     .++..+|..|.|+|.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-----~dv~~rda~g~t~l~y  700 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-----VDVMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-----ccceecccCCchhhhh
Confidence            357788888999999999988443  223334667899999999999999999999999     9999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcC
Q 038143           82 AAALGNEAMCHCMASKD   98 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~   98 (103)
                      |...|.-||+..|++.|
T Consensus       701 ar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYG  717 (749)
T ss_pred             HhhcccHHHHHHHHHcC
Confidence            99999999999999985

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.38  E-value=3.4e-12  Score=83.09  Aligned_cols=91  Identities=15%  Similarity=0.073  Sum_probs=80.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhc--------C---------------CCCCcHHHHHHHhCChhHHHHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKL--------T---------------RSGDTALHIAAAAGQTNIVSELVEI   59 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~--------~---------------~~g~t~l~~a~~~~~~~~~~~ll~~   59 (103)
                      .++||+|+.+.+.+.|..|+..  +++++++        +               ..|..||..||.-++.+++++|+++
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~--gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAA--GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHc--CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            5799999999999999999998  4444431        1               1367899999999999999999999


Q ss_pred             hCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           60 MGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        60 ~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      +     ++++.+|..|+|.||..+..-..++..++++.|+.
T Consensus       263 g-----Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  263 G-----ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             C-----CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8     99999999999999999999888999999998875

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=6.7e-12  Score=73.98  Aligned_cols=89  Identities=20%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|.+|+..|+.+.|+.+|+.+.+.+. ..+..+.||||.|+.+|+.++.+.|++.|     +.....|.-|.|+...|
T Consensus        46 Ms~LahAaykGnl~~v~lll~~gaDvN~-~qhg~~YTpLmFAALSGn~dvcrllldaG-----a~~~~vNsvgrTAaqmA  119 (396)
T KOG1710|consen   46 MSVLAHAAYKGNLTLVELLLELGADVND-KQHGTLYTPLMFAALSGNQDVCRLLLDAG-----ARMYLVNSVGRTAAQMA  119 (396)
T ss_pred             ccHHHHHHhcCcHHHHHHHHHhCCCcCc-ccccccccHHHHHHHcCCchHHHHHHhcc-----CccccccchhhhHHHHH
Confidence            4689999999999999999999444332 34778899999999999999999999998     88889999999999999


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      +.-|+.+++..+-.+
T Consensus       120 AFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  120 AFVGHHECVAIINNH  134 (396)
T ss_pred             HHhcchHHHHHHhcc
Confidence            999999999877543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=3.1e-12  Score=80.08  Aligned_cols=88  Identities=22%  Similarity=0.212  Sum_probs=77.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH
Q 038143            5 CLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA   84 (103)
Q Consensus         5 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~   84 (103)
                      |+|.+....+.+.+.+.+.......+...|..|.||||+|+..|+...++.|+..+     +++..+|+.|++|||-|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-----Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-----ADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-----CCccccccccccHHHHHHH
Confidence            58899999999988887766445667788999999999999999999999999998     9999999999999999999


Q ss_pred             hCCHHHHHHHHhc
Q 038143           85 LGNEAMCHCMASK   97 (103)
Q Consensus        85 ~~~~~~~~~l~~~   97 (103)
                      .|+.+++..++.+
T Consensus        98 ~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   98 TGNEQIITEVLRH  110 (560)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999887666554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=1e-11  Score=57.24  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIA   44 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a   44 (103)
                      .+|||.|+..|+.++++.|+..  +.+++.+|..|+||||+|
T Consensus        17 ~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   17 NTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            5899999999999999999966  788999999999999987

>PF13606 Ank_3: Ankyrin repeat

Probab=99.27  E-value=9.6e-12  Score=50.08  Aligned_cols=28  Identities=29%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           74 RGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        74 ~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+||||+|+..|+.+++++|++.|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4677777777777777777777777654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.21  E-value=5.2e-11  Score=78.32  Aligned_cols=80  Identities=16%  Similarity=0.078  Sum_probs=65.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc--ccccccccccCCCCcHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE--NASNVLKIQNDRGDTAF   79 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~~g~tpl   79 (103)
                      ..+|||.|+..|+.+.++.|+..  +.+++..|..|.||||+|+..++.+++++|++++..  ...+..+..+..|.+|+
T Consensus       115 G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        115 GRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence            36899999999999999999999  777888999999999999999999999999998200  11266666777777776


Q ss_pred             HHHH
Q 038143           80 HLAA   83 (103)
Q Consensus        80 ~~a~   83 (103)
                      ..+.
T Consensus       193 ~~~~  196 (664)
T PTZ00322        193 LEDS  196 (664)
T ss_pred             chhh
Confidence            6544

>PF13606 Ank_3: Ankyrin repeat

Probab=99.15  E-value=6.8e-11  Score=47.58  Aligned_cols=25  Identities=44%  Similarity=0.627  Sum_probs=23.3

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHHHh
Q 038143           36 SGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +|+||||+|++.|+.+++++|++.|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            4899999999999999999999988

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.15  E-value=3.4e-11  Score=79.34  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      |++||.++..|....+++||.+  |.++...| .+|+|+||.|..+|+++++-.|+.+|     ....++|..|.+||..
T Consensus        53 R~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-----~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   53 RTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-----RSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             cceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHHHHhcC-----CceEEecccCCCHHHH
Confidence            4455555555555555555555  33333333 34555555555555555555555555     4455555555555554


Q ss_pred             HHH
Q 038143           82 AAA   84 (103)
Q Consensus        82 a~~   84 (103)
                      .++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.14  E-value=1.1e-10  Score=48.03  Aligned_cols=24  Identities=42%  Similarity=0.570  Sum_probs=14.7

Q ss_pred             CCcHHHHHHHhCChhHHHHHHHHh
Q 038143           37 GDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus        37 g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      |.||||+|+..++.+++++|++.|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc
Confidence            556666666666666666666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.13  E-value=1.3e-10  Score=47.84  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=26.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           74 RGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        74 ~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|.||||+|+..|+.+++++|+++|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5899999999999999999999999875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.13  E-value=3.5e-10  Score=72.27  Aligned_cols=90  Identities=22%  Similarity=0.278  Sum_probs=75.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+-||+|+..|+.+.|+.+|.+.|.-..+..|..|.|+||-|+..++..+.++|++.|     +.+...|..|.||-.-|
T Consensus       900 ~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag-----asl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  900 CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG-----ASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc-----hhheecccCCCChHHHH
Confidence            4568888888888888888888877667778888888888888888888888888888     77888888888888888


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      ...|..++..||-++
T Consensus       975 qqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhcCCchHHHHHhhh
Confidence            888888888887654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.07  E-value=2e-10  Score=75.92  Aligned_cols=80  Identities=28%  Similarity=0.274  Sum_probs=68.4

Q ss_pred             HHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc-CCCCcHHHHHHHhCCHHHHHHHH
Q 038143           17 NIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTAFHLAAALGNEAMCHCMA   95 (103)
Q Consensus        17 ~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~   95 (103)
                      .++-++.+.-+-..+..|..|+|+||+++..+...++++|+++|     .++..+| ..|+||||-|..+|+.+++-.|+
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhG-----idv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHG-----IDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcC-----ceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            35555555323236778999999999999999999999999999     8888998 47999999999999999999999


Q ss_pred             hcCccc
Q 038143           96 SKDREL  101 (103)
Q Consensus        96 ~~~~~l  101 (103)
                      .+|..|
T Consensus       107 ~~g~SL  112 (1267)
T KOG0783|consen  107 SKGRSL  112 (1267)
T ss_pred             hcCCce
Confidence            998765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-09  Score=70.06  Aligned_cols=94  Identities=21%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +.+..|+..+++-.+......  +...-..+....+.||+|+..|+.++++++++++   ....+++.|..|.|+||-|+
T Consensus       868 eeil~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~---p~elld~~de~get~lhkaa  942 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHG---PSELLDMADETGETALHKAA  942 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcC---CHHHHHHHhhhhhHHHHHHH
Confidence            346788888888777777777  3334456778899999999999999999999998   34667888999999999999


Q ss_pred             HhCCHHHHHHHHhcCcccc
Q 038143           84 ALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~l~  102 (103)
                      ..++-.+.++|++.|++|.
T Consensus       943 ~~~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  943 CQRNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             HhcchHHHHHHHhcchhhe
Confidence            9999999999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.92  E-value=5.3e-10  Score=76.09  Aligned_cols=88  Identities=17%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccc-ccCCCCcHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTAFHLA   82 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~g~tpl~~a   82 (103)
                      ++|-.||..|+.+.|+.++.+  +.++.-+|..|.+||.+|+..||..+|+.|+...     +++.. .|+.+.|+|-+|
T Consensus       759 t~LT~acaggh~e~vellv~r--ganiehrdkkgf~plImaatagh~tvV~~llk~h-----a~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  759 TNLTSACAGGHREEVELLVVR--GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAH-----ADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             ccccccccCccHHHHHHHHHh--cccccccccccchhhhhhcccCchHHHHHHHhhh-----hhhhhhcccccCceEEEe
Confidence            456667777777777777776  5566666777777777777777777777666654     33322 334455555555


Q ss_pred             HHhCCHHHHHHHHhcC
Q 038143           83 AALGNEAMCHCMASKD   98 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~   98 (103)
                      |..|..++++.|+..+
T Consensus       832 csggr~~vvelLl~~g  847 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAG  847 (2131)
T ss_pred             cCCCcchHHHHHHHhh
Confidence            5555555555555443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.89  E-value=8.8e-09  Score=68.04  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC--chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPM--SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~------------------   62 (103)
                      ...+..|+..|+...|+.++.....  .+.+..|.-|+++|++|..+.+.++++.|++..-.                  
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE  105 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVE  105 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence            4567789999999999999987554  77888999999999999999999999988887411                  


Q ss_pred             -------------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 -------------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 -------------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                                   .........-..+.||+.+|+-.++.||+++|+.+|+.+
T Consensus       106 ~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  106 LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence                         000111123345789999999999999999999998764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.84  E-value=2.5e-09  Score=72.96  Aligned_cols=94  Identities=23%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      +.||..|+--|+...|..++..+.+. --..|+.+.|+|.+||..|..++++.|+..+     +.-..++....||+.+|
T Consensus       791 f~plImaatagh~tvV~~llk~ha~v-eaQsdrtkdt~lSlacsggr~~vvelLl~~g-----ankehrnvsDytPlsla  864 (2131)
T KOG4369|consen  791 FVPLIMAATAGHITVVQDLLKAHADV-EAQSDRTKDTMLSLACSGGRTRVVELLLNAG-----ANKEHRNVSDYTPLSLA  864 (2131)
T ss_pred             chhhhhhcccCchHHHHHHHhhhhhh-hhhcccccCceEEEecCCCcchHHHHHHHhh-----ccccccchhhcCchhhh
Confidence            56888999999999998888884433 2245888999999999999999999999988     66667777888999999


Q ss_pred             HHhCCHHHHHHHHhcCcccc
Q 038143           83 AALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l~  102 (103)
                      ...|..++++.|++.|+++-
T Consensus       865 ~Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  865 RSGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             cCcchHHHHHHHhhcccccc
Confidence            99999999999998887753

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.80  E-value=2.8e-08  Score=60.94  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      ...|+.||+.|+.+.|+.+++.  +.++|..|....+||.+|+..||.+++++|+++|
T Consensus        37 f~elceacR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenG   92 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENG   92 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcC
Confidence            3568999999999999999997  8899999999999999999999999999999997

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.67  E-value=7.2e-08  Score=59.25  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             CcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 038143           38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   99 (103)
                      .--|..||+.|..+.++.|++.|     .++|..|.-..+||.+|+.-||.+++++|+++|+
T Consensus        37 f~elceacR~GD~d~v~~LVetg-----vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG-----VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC-----CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            34588999999999999999998     9999999999999999999999999999999986

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.61  E-value=1.3e-07  Score=53.04  Aligned_cols=66  Identities=24%  Similarity=0.200  Sum_probs=54.2

Q ss_pred             chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhc
Q 038143           28 SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK   97 (103)
Q Consensus        28 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   97 (103)
                      .+++..|..|||+++.|+..|+.+.+.+|+.+|    .+.+...|..+.+.+.+|-+.|..++++.|-+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg----~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRG----VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccC----cccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            457788888899999988888888888888886    256777888888888888888888888877654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.58  E-value=8.6e-08  Score=64.17  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +.++||.|+..|..-.++.++..  +.+++..|..|++|+|.+...|+...+..+++++     +..++.+..|.+|+++
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-----a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRG-----ADPNAFDPDGKLPLDI  728 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhcccc-----ccccccCccCcchhhH
Confidence            46789999999999988888888  6678889999999999999999999998888888     8888889999999999


Q ss_pred             HHHhCCHHH
Q 038143           82 AAALGNEAM   90 (103)
Q Consensus        82 a~~~~~~~~   90 (103)
                      |....+.++
T Consensus       729 a~~~~~~d~  737 (785)
T KOG0521|consen  729 AMEAANADI  737 (785)
T ss_pred             HhhhccccH
Confidence            877655443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.55  E-value=4.2e-08  Score=66.07  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 038143           66 NVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        66 ~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   99 (103)
                      ..++.+|..|+||||||+.+|+..++..|++.|+
T Consensus       632 ~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga  665 (975)
T KOG0520|consen  632 VAIDIRDRNGWTPLHWAAFRGREKLVASLIELGA  665 (975)
T ss_pred             cccccccCCCCcccchHhhcCHHHHHHHHHHhcc
Confidence            5667777778888888888887777777776544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=3.3e-07  Score=58.27  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      ++|||.|+..|+..+++.++..  ++....++..||++||-|+..|+..++..++.+.
T Consensus        56 ~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   56 RTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             CccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            5899999999999999999999  6667788999999999999999998888777664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.38  E-value=1e-06  Score=56.83  Aligned_cols=56  Identities=20%  Similarity=0.041  Sum_probs=49.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +++||.||..|++.....|+ .+ +.++...|..|+|+|.||-+.|..+++..|+++|
T Consensus       662 rt~LHLa~~~gnVvl~QLLi-Wy-g~dv~~rda~g~t~l~yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  662 RTALHLAARKGNVVLAQLLI-WY-GVDVMARDAHGRTALFYARQAGSQECIDVLLQYG  717 (749)
T ss_pred             cchhhhhhhhcchhHHHHHH-Hh-CccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence            78999999999988655555 43 6778889999999999999999999999999998

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.23  E-value=5.6e-07  Score=60.95  Aligned_cols=87  Identities=22%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             HHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccc-ccccccccCCCCcHHHHHHHhCCH
Q 038143           10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENA-SNVLKIQNDRGDTAFHLAAALGNE   88 (103)
Q Consensus        10 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~g~tpl~~a~~~~~~   88 (103)
                      |..+.+++...++... +..++.+|..||||||+|+..|+..++..|...+++.. -.+++..+..|.|+..+|...|+.
T Consensus       615 ca~lg~ewA~ll~~~~-~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  615 CAALGYEWAFLPISAD-GVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             hhhcCCceeEEEEeec-ccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            4555555555555443 45688899999999999999999999999998873322 233445556799999999999999


Q ss_pred             HHHHHHHhc
Q 038143           89 AMCHCMASK   97 (103)
Q Consensus        89 ~~~~~l~~~   97 (103)
                      .+..+|-+.
T Consensus       694 gia~~lse~  702 (975)
T KOG0520|consen  694 GIAGYLSEK  702 (975)
T ss_pred             chHHHHhhh
Confidence            888777553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.18  E-value=1.7e-06  Score=58.28  Aligned_cols=62  Identities=21%  Similarity=0.336  Sum_probs=57.3

Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        34 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      -..|.|+||.|+..+..-+.++|++.+     ++++..|..|.||+|.+...|+...+..+++++++
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~g-----a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~  714 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNG-----ADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD  714 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcC-----CcchhhhccCCCcchhhhhhcccchhhhhcccccc
Confidence            356899999999999999999999999     88999999999999999999999999988888764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.17  E-value=1.1e-06  Score=55.54  Aligned_cols=58  Identities=19%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +++.||.|+..|+.+.++.++... +.+.+.+|..|+|||.-|...+|.+++++|-+..
T Consensus       539 ~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  539 DRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            578999999999999999999884 4678889999999999999999999999888764

>smart00248 ANK ankyrin repeats

Probab=98.09  E-value=9.5e-06  Score=31.05  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=18.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           75 GDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        75 g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |.||+|+++..++.+++++|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777777777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.97  E-value=2.2e-05  Score=50.16  Aligned_cols=56  Identities=23%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      -+|||.|++.|+.-.++.|+..  |+++...|.+|.||+.+|-..||-++.+-|++..
T Consensus       168 ~TpLHvAAk~Gq~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  168 NTPLHVAAKAGQILQAELLAVY--GADPGAQDSSGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             CchhHHHHhccchhhhhHHhhc--cCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHHH
Confidence            4799999999999999999888  7889999999999999999999988777666543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=3.6e-05  Score=49.20  Aligned_cols=46  Identities=28%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH
Q 038143           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA   84 (103)
Q Consensus        34 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~   84 (103)
                      +..-.|+||+|+..|...++.++++.+     +++..+|..|.||..++..
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg-----~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEG-----CDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhc-----CCchhcccCCCCccccccc
Confidence            445689999999999999999999998     9999999999999999883

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.73  E-value=0.0002  Score=40.68  Aligned_cols=58  Identities=19%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             CchHHHHHHHHhCCHHHHHHHHHcCCC-chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            1 MEVNCLSKFAMTGQWDNIVQAYENNPM-SREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         1 ~~~~~l~~a~~~g~~~~v~~ll~~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +.+++++.|++.|..+.+..++..  + +.+...|.++.+.+.+|-..|..++++.|.+..
T Consensus        11 fgWTalmcaa~eg~~eavsyllgr--g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGR--GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhcc--CcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            457999999999999999999998  5 567788999999999999999999999999875

>smart00248 ANK ankyrin repeats

Probab=97.67  E-value=0.00011  Score=27.88  Aligned_cols=25  Identities=36%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHHHh
Q 038143           36 SGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      .|.|++|+++..++.++++.+++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3678888888888888888888875

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.80  E-value=0.0055  Score=41.87  Aligned_cols=59  Identities=14%  Similarity=-0.041  Sum_probs=45.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCc--------hhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMS--------REAKLTRSGDTALHIAAAAGQTNIVSELVEIMG   61 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~--------~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~   61 (103)
                      ..+|.+|+..|..+.|+.++..-...        ........+.|||.+||..++.+++++|+++|.
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            46788999999999998888762211        011223567999999999999999999999983

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.79  E-value=0.0012  Score=42.54  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAA   45 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~   45 (103)
                      .++||+|+..|...+|..+|+.  +++....|..|.||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Lee--g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEE--GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHh--cCCchhcccCCCCcccccc
Confidence            5899999999999999999999  6889999999999999977

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.83  E-value=0.089  Score=31.21  Aligned_cols=93  Identities=10%  Similarity=-0.042  Sum_probs=59.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC----CCCcHHHHHHHh--CChhHHHHHHHHh-CcccccccccccCCC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR----SGDTALHIAAAA--GQTNIVSELVEIM-GENASNVLKIQNDRG   75 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~----~g~t~l~~a~~~--~~~~~~~~ll~~~-~~~~~~~~~~~~~~g   75 (103)
                      ..++.+++..+..+.+..++.+   ++....|-    .+.--+.++...  .+..++++.+++| .+.  ...-.+-+.|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~---f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~v--N~~F~~~NSG  254 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSK---FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDV--NKKFQKVNSG  254 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhh---cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhcccccc--chhhhccCCc
Confidence            3567777777777777777765   22222221    122234555443  3456888888887 111  1112244679


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           76 DTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        76 ~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      .|.|.-|.++++.+++.+|+..|+-
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999999873

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.43  E-value=0.19  Score=24.34  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=10.4

Q ss_pred             cHHHHHHHhCChhHHHHHHHH
Q 038143           39 TALHIAAAAGQTNIVSELVEI   59 (103)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~   59 (103)
                      ..+..|...-+.+++++|++.
T Consensus        34 ~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   34 DCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHHhhHHHHHHHHHh
Confidence            345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.00  E-value=0.77  Score=22.19  Aligned_cols=47  Identities=13%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             cHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhc
Q 038143           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK   97 (103)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   97 (103)
                      ..+..|...|+.++++.+++.+     . ++      ...+..|...-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-----~-~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-----K-PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-----c-cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4578999999999999999874     1 11      3479999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.84  E-value=1.2  Score=25.62  Aligned_cols=45  Identities=20%  Similarity=0.185  Sum_probs=34.4

Q ss_pred             HHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHh
Q 038143           41 LHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS   96 (103)
Q Consensus        41 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   96 (103)
                      |..|+.+|....+...+++|     .+++.      +.+..|+..++-.++.+++.
T Consensus       147 l~~a~~kgll~F~letlkyg-----g~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYG-----GNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcC-----CcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            56688888888888788877     44332      68888999999888888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=86.80  E-value=2.3  Score=25.59  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHcCCCchhhh---cCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143           13 GQWDNIVQAYENNPMSREAK---LTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus        13 g~~~~v~~ll~~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      .+...++.+|..+- ..++.   ...+|.|-|.-|..+++.+++..|+++|
T Consensus       228 a~~kvL~~Fi~~Gl-v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  228 ASYKVLEYFINRGL-VDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             CcHHHHHHHHhccc-cccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            34556666666622 22332   3578999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.52  E-value=3.3  Score=23.96  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=35.5

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHH
Q 038143            6 LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVE   58 (103)
Q Consensus         6 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~   58 (103)
                      |..|+..|-++.+.+.++.+  .+++      .+.|..|+.+++..++.+++.
T Consensus       147 l~~a~~kgll~F~letlkyg--g~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYG--GNVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcC--Cccc------HHHHHHHHHhhHHHHHHHhhc
Confidence            56788999999999999883  3232      278999999999998887653

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-04
2rfa_A	232	Transient receptor potential cation channel subfa	8e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	9e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 29 REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          ++   T  GD+ LH+A    +  +  E++  +  + + +   QN+   T  HLA     
Sbjct: 1  KQQL-TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQ 57

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI--QNDRGDTAFHLAAALGN 87
              G+T LH+A   G    V  L +           +   N  G T  HLA+  G 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
            A+   +G TALH+A      ++VS L+    +  ++V      +G + + L     +  
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLL----KCGADV-NRVTYQGYSPYQLTWGRPSTR 198

Query: 90  MCH 92
           +  
Sbjct: 199 IQQ 201

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            T LH+A    Q  I   L+        +  ++++ RG+T  HLA   G  A 
Sbjct: 45 QQTPLHLAVITNQPEIAEALL----GAGCDP-ELRDFRGNTPLHLACEQGCLAS 93

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
             +G T LH+A+  G   IV  LV       ++V   +   G TA HLA  L N  +
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLV----SLGADVNAQEPCNGRTALHLAVDLQNPDL 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEI-----MGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G+T LHI           ++  +      G++  ++  + N++G T F LA   GN  M
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           ++ L +AA       +S+L++        V   +   G+TA H+AA   N
Sbjct: 3  WESPLLLAAKENDVQALSKLLK---FEGCEV-HQRGAMGETALHIAALYDN 49

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
             G+TALHIAA          L+E   E     +  +   G TA H+A    N  +
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 23  ENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
            +    R   L   G+  L  AA  G   IV  L+    E+ +++ + Q+  G+T  H+ 
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADI-RAQDSLGNTVLHIL 161

Query: 83  AALGNE 88
               N+
Sbjct: 162 ILQPNK 167

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 34  TRSGDTALHIAAAAGQTNIVSEL------VEIMGENASNVLKIQNDR--GDTAFHLAAAL 85
              G TALHIA      N+V  L      V      +    +  N    G+     AA +
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 86  GNEAM 90
           G+E +
Sbjct: 132 GSEEI 136

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          T  GDTALH+A        +  L+         +  +QND G TA HLAA LG  + 
Sbjct: 6  TEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYL-DLQNDLGQTALHLAAILGEAST 60

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
             G TALH+AA  G+ + V +L        + V  +    G TA HLA  +      
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLY----AAGAGV-LVAERGGHTALHLACRVRAHTCA 94

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G T LH+A       +V  L     +  +++ K +   G T  HLA      ++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLR----DAGADLNKPEPTCGRTPLHLAVEAQAASV 207

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
              G T L  A       +   L      + +           +    + +  + 
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLR----AHGAPE-PEDGGDKLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
                  G T LH+A  A   +++  L+    +  ++    +   G T    A    N  
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLL----KAGADP-TARMYGGRTPLGSALLRPNPI 239

Query: 90  MC 91
           + 
Sbjct: 240 LA 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.1 bits (108), Expect = 4e-07
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
          GDT LHIA   G    V  LV +  +    +  I N+   T  HLA      
Sbjct: 9  GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLP 59

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            R G TA H+A        +  L++       ++ + +N  G TA H+A     +  
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQET 131

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
             SG +ALH A+  G   +V  LV     + ++   ++N   DT   +A +   
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLV----RSGADS-SLKNCHNDTPLMVARSRRV 228

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
           +A   +SG + L  A      ++V  L+    ++ +NV   Q   G +A H A+  G   
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLL----QHGANV-NAQMYSGSSALHSASGRGLLP 197

Query: 90  M 90
           +
Sbjct: 198 L 198

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 26  PMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL 85
             ++       G+  L +AA   Q  IV  L++   + A   +  ++  G+T  H    +
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD--ISARDSVGNTVLHALVEV 194

Query: 86  GNE 88
            + 
Sbjct: 195 ADN 197

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 38.6 bits (90), Expect = 9e-05
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 11/76 (14%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGEN-----------ASNVLKIQNDRGDTAFHLA 82
              G+T LH         + +        N              + +I N +G T   LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 83  AALGNEAMCHCMASKD 98
           A+ G   +   +  ++
Sbjct: 241 ASSGKIGVLAYILQRE 256

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 37  GDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G TALHIA       +V+ LVE                   +     G+    LAA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 88  EAMC 91
            A+ 
Sbjct: 161 LAIV 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 18  IVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDT 77
           I+ A  +  +  E    R G T L +AA++G+  +++ +++            +      
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------------REIHEPE 261

Query: 78  AFHLAAALGNE 88
             H AA   + 
Sbjct: 262 CRHAAAHHHHH 272

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           G T LHIAA   Q  +   L+    +   +    ++ +G T  HLAA  G+  M 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLL----QYGGSA-NAESVQGVTPLHLAAQEGHAEMV 261

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            SG T LH+A+  G   IV  L+    +  ++   + N + +T  H+AA  G+  + 
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLL----QRGASP-NVSNVKVETPLHMAARAGHTEVA 63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           +  G T LH+AA  G   +V+ L+       +N   + N  G T  HL A  G+  + 
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLL----SKQANG-NLGNKSGLTPLHLVAQEGHVPVA 294

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
              +T LH+AA AG T +   L+    +N + V   +     T  H AA +G+  M 
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLL----QNKAKV-NAKAKDDQTPLHCAARIGHTNMV 96

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           TR G T LH+A+  G   +V  L+    ++ ++V   +   G +  H AA  G+  + 
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLL----QHQADV-NAKTKLGYSPLHQAAQQGHTDIV 360

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            ++G T LH+A      +IV  L+        +        G T  H+AA      + 
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL----PRGGSP-HSPAWNGYTPLHIAAKQNQVEVA 228

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           T +G T LHIAA  G    V  L+    E  ++       +G T  H+AA  G 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL----EKEASQ-ACMTKKGFTPLHVAAKYGK 158

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            +   T LH AA  G TN+V  L+    EN +N   +    G T  H+AA  G+    
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLL----ENNANP-NLATTAGHTPLHIAAREGHVETV 129

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           T+ G + LH AA  G T+IV+ L++     AS      +  G T   +A  LG  
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLK---NGAS--PNEVSSDGTTPLAIAKRLGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            +SG T LH+ A  G   +   L+    ++   V       G T  H+A+  GN  +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI----KHGVMV-DATTRMGYTPLHVASHYGNIKL 326

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 20  QAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
           +A        +      G+  L +AA   Q ++V+ L+E   + AS  L+  +  G+T  
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS--LEATDSLGNTVL 176

Query: 80  HLAAALGN 87
           H    + +
Sbjct: 177 HALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
               ++AL I    G   + + L            +I N +G T   LAA  G   +   
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCP----TVQLE-EISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 94  MASKD 98
           +  ++
Sbjct: 240 ILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 15/93 (16%)

Query: 6   LSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVE------- 58
           L     +G    +V A   +   +       G +ALHIA        V  LVE       
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQ-------GHSALHIAIEKRSLQCVKLLVENGADVHL 118

Query: 59  -IMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G             G+    LAA      +
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G+  LH A   GQ  +  +LV     N + V  I N  G+     A A   E
Sbjct: 105 GNVPLHYACFWGQDQVAEDLV----ANGALV-SICNKYGEMPVDKAKAPLRE 151

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.2 bits (90), Expect = 8e-05
 Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
              +      G    V   +    +N  N L   +D G +  H A   G 
Sbjct: 5  FMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGR 51

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            R  DT LH+AA+ G  +IV +L+    +  +++    N+ G+   H A   G + + 
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLL----QYKADI-NAVNEHGNVPLHYACFWGQDQVA 121

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          G + LH A   G++ +V  L+       + +  + N   DT  HLAA+ G+
Sbjct: 39 GFSPLHWACREGRSAVVEMLI----MRGARI-NVMNRGDDTPLHLAASHGH 84

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G+  L +AA   Q +IV  L E   + A   L+ Q+ RG+T  H   A+ +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQAD--LRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 9/64 (14%)

Query: 37  GDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G TALHIA      + V  LVE                         G+    LAA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 88  EAMC 91
             + 
Sbjct: 153 PHIV 156

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 37  GDTALHIAAAAG-----QTNIVSELVEIMGENASNV------LKIQNDRGDTAFHLAAAL 85
           G+T LH   A        T  V+++ +++    + +        + N+ G +   +AA  
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 86  GNEAM 90
           G   +
Sbjct: 236 GKIGI 240

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 30  EAKLTRSGDTALHIAA---AAGQTNIVSELVEIMGENASNVLKIQND-------RGDTAF 79
           E +   +G T L  A    +AG+ + +  L++I  E   N+ +  N        RG TA 
Sbjct: 39  EFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTAL 97

Query: 80  HLAAALGNEAM 90
           H+A     +  
Sbjct: 98  HIAIERRCKHY 108

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
           + +  R G TALH+AA   +  +V  LV    E  +++ +++++RG TA  LA  +    
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALV----ELGADI-EVEDERGLTALELAREILKTT 157

Query: 90  MC 91
             
Sbjct: 158 PK 159

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           +T    AA       +S+L+E    +A       ++ G TA    A LG++  
Sbjct: 44 YETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKC 91

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 35.9 bits (84), Expect = 6e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 8/54 (14%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          G     I    G +             A++V        +T +  AA   +E  
Sbjct: 14 GAMEYLIEWKDGHS----PSWVPSSYIAADV----VSEYETPWWTAARKADEQA 59

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
           A +      A  +AA  G  ++++ L E+     +    +       AF  AA 
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCEL---APTEATAMIQAENYYAFRWAAV 207

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 32  KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALG 86
            +      A  +AA  G  ++++ L E+     + ++ +       AF LAA  G
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAENYHAFRLAAENG 174

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.2 bits (98), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
             ++H  AA G+ + + E +   G+N  N     ++RG T    A+A G 
Sbjct: 2  DSLSIHQLAAQGELDQLKEHLRK-GDNLVN---KPDERGFTPLIWASAFGE 48

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.9 bits (92), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G T L  A        V  L+       +++   + D G T   LA ALG  
Sbjct: 102 GGTPLLYAVRGNHVKCVEALL----ARGADL-TTEADSGYTPMDLAVALGYR 148

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
          G T L  A+A G+   V  L+    E  ++   I     ++A  LA+  G  
Sbjct: 36 GFTPLIWASAFGEIETVRFLL----EWGADP-HILAKERESALSLASTGGYT 82

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
            +  ++AL +A+  G T+IV  L+    E   ++  I +  G T    A    + 
Sbjct: 66  AKERESALSLASTGGYTDIVGLLL----ERDVDI-NIYDWNGGTPLLYAVRGNHV 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
                   +TALH A  AG T ++S L+    E  +NV   QN +G++A  LA    N  
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANV-DAQNIKGESALDLAKQRKNVW 224

Query: 90  M 90
           M
Sbjct: 225 M 225

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            T LH AA   + ++V   +       + V ++  D   T  H A   G+ +M
Sbjct: 42 NVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQGHLSM 91

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
           +        T LH A   G  ++V +L+    +  ++   + +  G +  HLAA  G+ +
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLM----KYGADP-SLIDGEGCSCIHLAAQFGHTS 123

Query: 90  M 90
           +
Sbjct: 124 I 124

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
              +  A   G      ELV    E   +V +  +    T  H AA    
Sbjct: 9  STWDIVKATQYGIYERCRELV----EAGYDV-RQPDKENVTLLHWAAINNR 54

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 9e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 18  IVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDT 77
                +       A      +TALH+A  +     +  +V+ + +N+ N+   Q  +G T
Sbjct: 150 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH-IVDFLVQNSGNL-DKQTGKGST 207

Query: 78  AFHLAAALGNEAMC 91
           A H      N    
Sbjct: 208 ALHYCCLTDNAECL 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
           + +  R G TALH+AA   +  +V  LV    E  +++ +++++RG TA  LA  +    
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALV----ELGADI-EVEDERGLTALELAREILKTT 158

Query: 90  M 90
            
Sbjct: 159 P 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           +T    AA       +S+L+E    +    +   ++ G TA    A LG++  
Sbjct: 45 YETPWWTAARKADEQALSQLLE--DRD----VDAVDENGRTALLFVAGLGSDKC 92

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 8/54 (14%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          G     I    G +             A++V        +T +  AA   +E  
Sbjct: 15 GAMEYLIEWKDGHS----PSWVPSSYIAADV----VSEYETPWWTAARKADEQA 60

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 9e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G  AL  A  +   + V  +  ++ ++ ++V  ++ +RG T   LA    +  +
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGL 234

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 24  NNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
                 + +L + G TAL  AA  G   ++  L++ MG +    +   ++ G  A   A 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD----VNACDNMGRNALIHAL 190

Query: 84  ALGNEAMCHCMASKDRELIS 103
              +++    +      L+ 
Sbjct: 191 LSSDDSDVEAIT---HLLLD 207

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G T L +A       +V  L+E         +   +  G TA  LA  L  + +
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G T   +AA AG   ++   +       ++V    +  G TAF  AA  G    
Sbjct: 72  GATPFLLAAIAGSVKLLKLFL----SKGADV-NECDFYGFTAFMEAAVYGKVKA 120

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           +  L  A      ++V +L+    E  +NV   + + G T  H A  +  E
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRE 52

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEI-----MGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G TA   AA  G+   +  L +      +        +     G TA   AA  G+  +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 35.9 bits (84), Expect = 9e-04
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
            +    G T LH A    + +IV  L+     + ++   ++   G T F LAA  G+
Sbjct: 32 NFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADP-VLRKKNGATPFLLAAIAGS 84

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            + G++ LH A      ++    VE       +V  ++++      +L+       + 
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVE----MGIDV-NMEDNEHTVPLYLSVRAAMVLLT 260

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            ++ +T L  A        +  +++ +   +S  L   N +G++  H A  +  E + 
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
                 +H+AA  GQT+ V  L+    E   +   IQN  G TA HLA   G  
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLI----ETGVSP-TIQNRFGCTALHLACKFGCV 66

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 10/67 (14%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTAFHLAAA 84
                  L+++  A    +  EL++             N + VL  +          AA 
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV-WLDFVPAAAD 299

Query: 85  LGNEAMC 91
              + + 
Sbjct: 300 PSKQEVL 306

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G TALH     G   +  E+++I+ +  ++    ++   +T    A    N   
Sbjct: 138 GQTALHWCVGLGPEYL--EMIKILVQLGASP-TAKDKADETPLMRAMEFRNREA 188

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 11/57 (19%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G   +H+A  A +T++V  LVE              +RG     L        +
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVE-----------GAKERGQMPESLLNECDEREV 126

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 11/52 (21%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G     +     +  +                 +++ +G TA H    LG E
Sbjct: 111 GQMPESLLNECDEREVNEIGSH-----------VKHCKGQTALHWCVGLGPE 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.5 bits (96), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           D  L  AA AG    V +L  +   N     +    R  T  H AA    
Sbjct: 8  ADRQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYNR 54

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           GDTALH AA  G  +IV  L+       +    ++N     AF +A      ++
Sbjct: 140 GDTALHAAAWKGYADIVQLLL----AKGART-DLRNIEKKLAFDMATNAACASL 188

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           G TAL+ A   G  +IV  L           L  QN  GDTA H AA  G   + 
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIE----LNQQNKLGDTALHAAAWKGYADIV 156

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 5/60 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
           + G   +  A    +     EL    G+     +    D  DT +    + G   +   
Sbjct: 9  VKPGQVKVFRALYTFEPRTPDELYIEEGD-----IIYITDMSDTNWWKGTSKGRTGLIPS 63

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          T   DT      + G+T ++           SN +  Q +  D   H AA  GN
Sbjct: 42 TDMSDTNWWKGTSKGRTGLIP----------SNYVAEQAESIDNPLHEAAKRGN 85

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
             S D  LH AA  G  + + E +    +N   V    +  G TA + A   G+
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECL----DNRVGV-NGLDKAGSTALYWACHGGH 118

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G T L  A        V  L+    E+ ++   I+ D G  +  LA ALG  
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLL----ESGADP-TIETDSGYNSMDLAVALGYR 148

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          +   ++H  AA G+   ++  +    E  + +    ++ G T    AAA G  A+
Sbjct: 2  ANSLSVHQLAAQGEMLYLATRI----EQENVI-NHTDEEGFTPLMWAAAHGQIAV 51

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
          G T L  AAA GQ  +V  L+    +N ++  ++     ++A  LA + G  
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLL----QNGADP-QLLGKGRESALSLACSKGYT 82

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
            ++AL +A + G T+IV  L+    +   +V    +  G T    A    + 
Sbjct: 69  RESALSLACSKGYTDIVKMLL----DCGVDV-NEYDWNGGTPLLYAVHGNHV 115

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G+  LH+AA  G   +V  LV+     ASNV   +N +GDTA  LA   G  
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVK---HTASNV-GHRNHKGDTACDLARLYGRN 150

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMA 95
           G+T LH   +     +V  LV    ++ SN L   ++ G++    A    N        
Sbjct: 131 GNTPLHWLTSIANLELVKHLV----KHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFE 184

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
           GDT L+IAA  G  +IV  L++     A     I N  G       A
Sbjct: 283 GDTCLNIAARLGNISIVDALLD---YGAD--PFIANKSGLRPVDFGA 324

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G T LH A +A    +   L+      A+++   +   G T   LAA L  E M
Sbjct: 90  GRTPLHAAVSADAQGVFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G T L +AA      ++ +L+     + ++V    +D G +A H AAA+ N   
Sbjct: 124 GTTPLILAARLAVEGMLEDLI----NSHADV-NAVDDLGKSALHWAAAVNNVDA 172

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G +ALH AAA    +    L+    +N +N   +QN+R +T   LAA  G+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLL----KNGANK-DMQNNREETPLFLAAREGS 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           S  +ALH AAA     ++  ++          ++  +  G TA  + A     
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGD--IEELDRNGMTALMIVAHNEGR 248

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
            G TALH AA      IV  LV   G N       Q++ G T   LAA  G 
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEGR 325

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            D+    A A G+T I++ +++       ++    N  G  A   AA  G+   
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLK---HATPDL-NKHNRYGGNALIPAAEKGHIDN 121

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          G+T L+IA       I   L+    +  +++  +QN   D+ +  A A G   +
Sbjct: 39 GNTPLNIAVHNNDIEIAKALI----DRGADI-NLQNSISDSPYLYAGAQGRTEI 87

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCH 92
           R G  AL  AA  G  + V  L+E   E+    +  QND G TA   A  L      +
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLREGNQLY 157

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
               LH AA+ G   ++  L         + +  Q+ +G T    A A G+
Sbjct: 140 NQIPLHRAASVGSLKLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGH 186

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          G   LH + +     I S L+  M     N+    +D G T FH+A ++GN  +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMEN--VNLDDYPDDSGWTPFHIACSVGNLEV 87

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
            + G T L  A A G  +    LVE  G        + +++G  A  +A 
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           +  LH A    +   V EL+       S +   ++  G    H + +     +
Sbjct: 2  SNYPLHQACMENEFFKVQELLH---SKPSLL-LQKDQDGRIPLHWSVSFQAHEI 51

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDTAFHLAAALGN 87
             SG T  HIA + G   +V  L +  +  +    L    ++G T  HLA     
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD----LNKITNQGVTCLHLAVGKKW 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           T  G T LH+A       +   L+    EN ++V +I++       H AA++G+  +
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLI----ENGASV-RIKDKFNQIPLHRAASVGSLKL 155

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G+TAL+ A  +G    V   V    +    ++        T+F+ A  L + ++
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
            +  LH AA    T IV  L+     +  +     +D+G+TA + A   GN
Sbjct: 62  NEFPLHQAATLEDTKIVKILL----FSGLDD-SQFDDKGNTALYYAVDSGN 107

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 9/72 (12%), Positives = 16/72 (22%), Gaps = 3/72 (4%)

Query: 34  TRSGDTALHIAAAAGQTNIVS--ELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           T+ G T        G  +I    EL +I  E  +++                        
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDEN 130

Query: 92  HCMASKDRELIS 103
             +         
Sbjct: 131 EMIPLYKLIFSQ 142

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 4/59 (6%)

Query: 35  RSGDTALHIAAAAGQTNIV--SELVE-IMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           +     +         +      L + I  ++   +  I++  G TA            
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIA 169

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           +  D+ LH         +   L+    +  ++  + +N  G     L       A  
Sbjct: 220 KGQDSPLHAVVRTASEELACLLM----DFGADT-QAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
             S  + +H AA  G    +  L+         V  I      +  H A   G+ + 
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLI----SQGWAV-NIITADHVSPLHEACLGGHLSC 107

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
                T L++A    Q   V +L+    E+ ++V +      D+  H      +E +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL----ESGADVNQ--GKGQDSPLHAVVRTASEEL 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           T    + LH A   G  + V  L+    ++ + V         T    A   G+    
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILL----KHGAQV-NGVTADWHTPLFNACVSGSWDCV 141

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.5 bits (91), Expect = 8e-05
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G T LH A +A    +   L+      A+++   +   G T   LAA L  E M
Sbjct: 58  GRTPLHAAVSADAQGVFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGM 107

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              G T L +AA      ++ +L+     + ++V    +D G +A H AAA+ N   
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLI----NSHADV-NAVDDLGKSALHWAAAVNNVDA 140

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G +ALH AAA    +    L+    +N +N   +QN+R +T   LAA  G+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLL----KNGANK-DMQNNREETPLFLAAREGS 170

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 37.4 bits (88), Expect = 9e-05
 Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           D     A   G  + V + V        +V     + G    H AA  G 
Sbjct: 7  CDKEFMWALKNGDLDEVKDYV----AKGEDV-NRTLEGGRKPLHYAADCGQ 52

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 36.6 bits (86), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          G   LH AA  GQ  I+  L+       +++    +    T    A   G+
Sbjct: 40 GRKPLHYAADCGQLEILEFLL----LKGADI-NAPDKHHITPLLSAVYEGH 85

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 18  IVQAYENNPMSREAKLTRSGDTALHIAAA-AGQTNIVSELVEIMGENASNVLKIQNDRGD 76
                +              +  LH+A   A Q ++   LV+ + +N  ++   +   G+
Sbjct: 152 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP--LVDFIIQNGGHL-DAKAADGN 208

Query: 77  TAFHLAAALGNEA 89
           TA H AA      
Sbjct: 209 TALHYAALYNQPD 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            + G   LH A + G   +   L+    ++ + V    +    T  H AA+     +C
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLL----KHGACV-NAMDLWQFTPLHEAASKNRVEVC 140

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           S +TALH A A+       ++ E++    +NV   +N    T  H+AA   +  +
Sbjct: 210 SHETALHCAVASLHPKRK-QVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDV 262

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
                T LH+AA   +  IV  L+    ++ ++V   ++  G    H A + G+  +
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLL----QHGADV-HAKDKGGLVPLHNACSYGHYEV 106

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            +   T LH+AA     +++  L     ++ + +    +  G TA H AA  G+   C
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLH----KHGAKM-NALDSLGQTALHRAALAGHLQTC 296

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
              L  AAA G    V  L+     +        N  G TA  +  
Sbjct: 2  AGDRLSGAAARGDVQEVRRLLHRELVH----PDALNRFGKTALQVMM 44

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
           G   +H+A   G T +VS L       + ++   ++ RG T   LA   G +
Sbjct: 101 GALPIHLAVQEGHTAVVSFLA----AES-DL-HRRDARGLTPLELALQRGAQ 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 36.2 bits (85), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           G + +H AA  G  + +  LV    E+ ++V  + +  G    HLA   G+ A+ 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLV----EHGADV-NVPDGTGALPIHLAVQEGHTAVV 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.4 bits (88), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
           S D  L  AAA GQ   V +L+    E  ++     N  G     +  
Sbjct: 10 GSSDAGLATAAARGQVETVRQLL----EAGADP-NALNRFGRRPIQVMM 53

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.6 bits (86), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          G T LH+AA  G   +V  L+    E  ++V   ++  G T  HLAA  G+
Sbjct: 35 GRTPLHLAARNGHLEVVKLLL----EAGADV-NAKDKNGRTPLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.2 bits (85), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          +G T LH+AA  G   +V  L+E  G +    +  ++  G T  HLAA  G+
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEA-GAD----VNAKDKNGRTPLHLAARNGH 47

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 27 MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALG 86
          + R + +       L  AA AGQ + V  L+     N ++V   ++  G T  HLAA  G
Sbjct: 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILM----ANGADV-AAKDKNGSTPLHLAARNG 68

Query: 87 NE 88
          + 
Sbjct: 69 HL 70

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
                 L  AAA G+   V  L+    E  +N     N  G     +  
Sbjct: 9  MEPSADWLATAAARGRVEEVRALL----EAGANP-NAPNSYGRRPIQVMM 53

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
              G T LH+AA  G   +V  L+        +V   Q+D G T    A    +
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSN---GQMDV-NCQDDGGWTPMIWATEYKH 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           GD+ LHIAA   + + V   +     +    + ++N  G+T    A+    
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSR-DSD----VTLKNKEGETPLQCASLNSQ 222

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
            +  LH AA +G  +I   L+        ++    N  GD+  H+AA    
Sbjct: 144 ENICLHWAAFSGCVDIAEILL----AAKCDL-HAVNIHGDSPLHIAARENR 189

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS 96
           G T LH+AA  G   IV  L+    +N ++V   Q+  G TAF ++   GNE +   +  
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLL----KNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 97  KD 98
            +
Sbjct: 168 LN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 35.8 bits (84), Expect = 7e-04
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
              L  AA AG+ + V  L+     N ++V   ++  G T  HLAA  G+
Sbjct: 14 LGKKLLEAARAGRDDEVRILM----ANGADV-NAEDASGWTPLHLAAFNGH 59

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          K        L  ++  G+ ++V  ++        +   + ND G TA H A   G+
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRII----YEVDDP-SLPNDEGITALHNAVCAGH 82

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
           G TALH A  AG T IV  LV    +   NV    +  G T  H AA+  N  +C
Sbjct: 70  GITALHNAVCAGHTEIVKFLV----QFGVNV-NAADSDGWTPLHCAASCNNVQVC 119

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 6/52 (11%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          +G  +L            SE +   G          N         ++  G 
Sbjct: 4  TGQVSLPPGKRTNLRKTGSERIAH-GMRVK-----FNPLPLALLLDSSLEGE 49

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 36.2 bits (85), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
            D+ LH AA  G  +IV  L+       ++     N  G            +
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLL----SYGASR-NAVNIFGLRPVDYTDDESMK 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 35.5 bits (83), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          G+T LHIA+  G    V  L+    +N S+   +++  G T  H A   G+
Sbjct: 10 GETLLHIASIKGDIPSVEYLL----QNGSDP-NVKDHAGWTPLHEACNHGH 55

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.2 bits (85), Expect = 3e-04
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
          +G T LH+AA  G   +V  L+    E  ++V   ++  G T  HLAA  G+  +
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLL----EAGADV-NAKDKNGRTPLHLAARNGHLEV 50

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 35.4 bits (83), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNE 88
            AK  ++G T LH+AA  G   +V  L+E  G +    +  ++  G T  HLAA  G+ 
Sbjct: 62  NAK-DKNGRTPLHLAARNGHLEVVKLLLEA-GAD----VNAKDKNGRTPLHLAARNGHL 114

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           G T LH AA+   T I   LV    ++ + +       G TAF        
Sbjct: 87  GWTPLHCAASCNDTVICMALV----QHGAAIFATTLSDGATAFEKCDPYRE 133

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
           G   LH AA+ G  +I   L+       ++V    N  GDT   +A     E +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI----SQGAHVGA-VNSEGDTPLDIAEEEAMEEL 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
            +SG TALH+AAA G T ++  L+    +   +V  I++  G T  H AA  G E  C
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLI----QARYDV-NIKDYDGWTPLHAAAHWGKEEAC 248

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 35.4 bits (83), Expect = 5e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
          ++ G+T LH AA  G    V +L+       ++V   ++  G+T  HLAA  G+
Sbjct: 6  SKDGNTPLHNAAKNGHAEEVKKLL----SKGADV-NARSKDGNTPLHLAAKNGH 54

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 18  IVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDT 77
                +              +  LH+A        +  LV+ + +N  ++   +   G+T
Sbjct: 171 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGHL-DAKAADGNT 228

Query: 78  AFHLAAALGNEAMC 91
           A H AA        
Sbjct: 229 ALHYAALYNQPDCL 242

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 35.4 bits (83), Expect = 9e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
             TALH A       +V  L+    +  ++V   Q+    TAF ++   GNE +
Sbjct: 100 KMTALHWATEHNHQEVVELLI----KYGADV-HTQSKFCKTAFDISIDNGNEDL 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.89
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
2rfa_A	232	Transient receptor potential cation channel subfa	99.88
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.87
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.87
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.87
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.87
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.87
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
2etb_A	256	Transient receptor potential cation channel subfam	99.87
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.87
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.86
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.86
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.86
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.86
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.86
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.86
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.86
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.86
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.86
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.85
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.84
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.83
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.83
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.81
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.8
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.67
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.67
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	88.78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.95  E-value=4.4e-27  Score=118.44  Aligned_cols=92  Identities=23%  Similarity=0.264  Sum_probs=86.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++.+|..|+||||+|+..++.+++++|++.+     ++++.+|..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHH
Confidence            36899999999999999999998  6778889999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..|+.+++++|++.|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999874

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=3.2e-27  Score=130.51  Aligned_cols=92  Identities=22%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        71 ~TpLh~A~~~g~~~~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~G~TpL~~A  143 (169)
T 4gpm_A           71 RTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNTSDSDGRTPLDLA  143 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHHH
Confidence            5799999999999999999988  6778888999999999999999999999999988     88889999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|+++|+++
T Consensus       144 ~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          144 REHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHTTCHHHHHHHHTC----
T ss_pred             HHcCCHHHHHHHHHCCCCc
Confidence            9999999999999998875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=3.5e-25  Score=116.39  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=87.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..++||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|++.+     ++++.+|..|.||||+
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-----ADINAPDKHHITPLLS   79 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCHHHH
Confidence            46899999999999999999998  5678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~   99 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADK   99 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=4.3e-25  Score=121.96  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.++..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|+||||+|+
T Consensus        39 t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-----advn~~d~~G~TpLh~A~  111 (169)
T 4gpm_A           39 TPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNAKDSDGRTPLHHAA  111 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHHHH
Confidence            455555555555555555555  4455566667777777777777777777777776     777777778888888888


Q ss_pred             HhCCHHHHHHHHhcCccc
Q 038143           84 ALGNEAMCHCMASKDREL  101 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~l  101 (103)
                      ..|+.+++++|++.|+++
T Consensus       112 ~~g~~~~v~~Ll~~gad~  129 (169)
T 4gpm_A          112 ENGHKEVVKLLISKGADV  129 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT
T ss_pred             HcCCHHHHHHHHHcCCCc
Confidence            888888888887777654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=2.4e-24  Score=114.95  Aligned_cols=92  Identities=24%  Similarity=0.223  Sum_probs=81.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..|..|+||||+|+..++.+++++|++.+     ++++.+|..|.||||+|
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-----ADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCHHHHH
Confidence            5789999999999999999988  6667788889999999999999999999999988     88888899999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.++++
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~  106 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADV  106 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCC
Confidence            9999999999999987764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2.6e-24  Score=114.89  Aligned_cols=93  Identities=19%  Similarity=0.197  Sum_probs=87.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|++.+     .+++.+|..|.||||+
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-----ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCGGGCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CcccCcCCCCCCHHHH
Confidence            36899999999999999999998  6678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR  102 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=1e-24  Score=113.36  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=87.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..++||.|+..|+.+.++.++..  +.+++..|..|+||||+|+..++.+++++|++.+     ++++.+|..|.||||+
T Consensus         9 g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            9 GNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-----ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-----CCTTCCCTTCCCTTHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCcccCCCCCCHHHH
Confidence            36899999999999999999988  6678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..++.+++++|++.|+++
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~  101 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV  101 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH
T ss_pred             HHHCCCHHHHHHHHHcCCCC
Confidence            99999999999999998864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=8.6e-24  Score=121.98  Aligned_cols=93  Identities=25%  Similarity=0.326  Sum_probs=87.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..++||.|+..|+.+.++.++..  +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~g~tpL~~  109 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSDGWTPLHC  109 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHH
Confidence            36899999999999999999988  5578888999999999999999999999999998     8999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       110 A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B          110 AASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCc
Confidence            99999999999999998875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=3.3e-24  Score=114.44  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCC-CCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDR-GDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+. ++.+++++|++.+     ++++.+|.. |.||||+
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-----~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG-----AEPNCADPATLTRPVHD   84 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-----CCSSCCBTTTTBCHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-----CCCCCcCCCCCCCHHHH
Confidence            5788888888888888888887  55677778888888888888 8888888888887     777778877 7888888


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~  104 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARL  104 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            88888888888888877653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1.5e-23  Score=114.87  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|++.+     .+++.+|..|.||||+|
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  115 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFTPLHEA  115 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC-----CCCCCcCCCCCCHHHHH
Confidence            4789999999999999999988  6677888889999999999999999999999988     88888999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       116 ~~~~~~~~v~~Ll~~ga~~  134 (165)
T 3twr_A          116 AAKGKYEICKLLLQHGADP  134 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCC
Confidence            9999999999999987654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.7e-23  Score=111.70  Aligned_cols=90  Identities=22%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..|..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+|+
T Consensus        47 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~tpl~~  119 (136)
T 2jab_A           47 GLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-----ADVNAQDKFGKTAFDI  119 (136)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCcCcCCCCCCHHHH
Confidence            35899999999999999999998  6678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcC
Q 038143           82 AAALGNEAMCHCMASKD   98 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~   98 (103)
                      |+..|+.+++++|++.|
T Consensus       120 A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          120 SIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTTCHHHHHHHHHC-
T ss_pred             HHHCCCHHHHHHHHHcC
Confidence            99999999999999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.3e-23  Score=113.97  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|++.+     .+++.+|..|.||||+|
T Consensus        35 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  107 (153)
T 1awc_B           35 TSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG-----ADVNAKDMLKMTALHWA  107 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcC-----CCCCCCCCCCCCHHHHH
Confidence            5788888888888888888877  5567777888888888888888888888888887     77888888888888888


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       108 ~~~~~~~~v~~Ll~~ga~~  126 (153)
T 1awc_B          108 TEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCc
Confidence            8888888888888887654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.1e-23  Score=119.94  Aligned_cols=92  Identities=24%  Similarity=0.328  Sum_probs=86.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++||.|+..|+.+.++.+++.  +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-----a~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAG-----ANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            5789999999999999999998  6678889999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCc
Confidence            9999999999999998765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.91  E-value=3.8e-23  Score=106.88  Aligned_cols=85  Identities=29%  Similarity=0.345  Sum_probs=80.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++||.|+..|+.+.++.++..  +.+++..|..|.||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        25 ~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           25 GKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-----ADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccccCCCcHHHHH
Confidence            5899999999999999999998  6678888999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHH
Q 038143           83 AALGNEAMCHCM   94 (103)
Q Consensus        83 ~~~~~~~~~~~l   94 (103)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=3.1e-23  Score=114.97  Aligned_cols=92  Identities=21%  Similarity=0.304  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||||+|
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A  112 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-----ADINAVNEHGNVPLHYA  112 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHH
Confidence            4688888888888888888887  5667777888888888888888888888888887     77888888888888888


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       113 ~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A          113 CFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCS
T ss_pred             HHcCCHHHHHHHHHCCCCc
Confidence            8888888888888887654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=3.4e-23  Score=113.03  Aligned_cols=91  Identities=24%  Similarity=0.306  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccc-cccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++ ++.++..|.||+|+
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~~g~t~l~~  143 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-----ASNVGHRNHKGDTACDL  143 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-----CCCTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-----CCCCCCcCCCCCcHHHH
Confidence            4688888888888888888877  5667777888888888888888888888888887     54 47778888888888


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..|+.+++++|+++|++
T Consensus       144 A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          144 ARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHTTCHHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            8888888888888888764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=2.6e-24  Score=114.83  Aligned_cols=91  Identities=13%  Similarity=0.088  Sum_probs=85.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCC-CCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRS-GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+. |+.+.++.|++.  +.+++..+.. |+||||+|+..++.+++++|++.+     ++++.+|..|.||||
T Consensus        45 g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~  116 (136)
T 1d9s_A           45 GRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-----ARLDVCDAWGRLPVD  116 (136)
T ss_dssp             CCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-----CCCCCCSSSSSCHHH
T ss_pred             CCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHH
Confidence            3589999999 999999999998  6678888999 999999999999999999999998     889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcc
Q 038143           81 LAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~  100 (103)
                      +|+..++.+++++|+++|++
T Consensus       117 ~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          117 LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999998874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.2e-23  Score=115.43  Aligned_cols=91  Identities=21%  Similarity=0.179  Sum_probs=84.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc-CCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.++.   +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.++ ..|.||||+
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-----ADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCSSSSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCCHHHH
Confidence            589999999999999999998   4567888999999999999999999999999998     8888888 899999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~  136 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADI  136 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT
T ss_pred             HHhcCcHHHHHHHHHcCCCC
Confidence            99999999999999998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=2e-23  Score=122.97  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             chHHHHHHHHh---CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcH
Q 038143            2 EVNCLSKFAMT---GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTA   78 (103)
Q Consensus         2 ~~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tp   78 (103)
                      ..+|||.|+..   |+.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||
T Consensus       169 g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~g~tp  241 (278)
T 1dcq_A          169 DETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK-----ASIEIANESGETP  241 (278)
T ss_dssp             TCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCH
T ss_pred             CCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCccCCCCCH
Confidence            36899999999   899999999999  7778899999999999999999999999999998     9999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCcc
Q 038143           79 FHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      ||+|+..|+.+++++|++.++.
T Consensus       242 L~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          242 LDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=5.6e-23  Score=107.81  Aligned_cols=91  Identities=23%  Similarity=0.289  Sum_probs=50.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     .+++.++..|.||||+|
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-----CCCcccCCCCCcHHHHH
Confidence            3555666666666666555555  3344445555555555555555555555555555     44555555555555555


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.+++
T Consensus        76 ~~~~~~~~~~~Ll~~g~~   93 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGAD   93 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcChHHHHHHHHHcCCC
Confidence            555555555555555443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=4e-23  Score=113.79  Aligned_cols=89  Identities=19%  Similarity=0.171  Sum_probs=44.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     .+++.+|..|.||||+|+
T Consensus        38 t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~  110 (172)
T 3v30_A           38 TPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLASTGGYTDIVGLLLERD-----VDINIYDWNGGTPLLYAV  110 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHH
Confidence            445555555555555555544  3334444444455555555555555555554444     444455555555555555


Q ss_pred             HhCCHHHHHHHHhcCc
Q 038143           84 ALGNEAMCHCMASKDR   99 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~   99 (103)
                      ..|+.+++++|++.|+
T Consensus       111 ~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A          111 RGNHVKCVEALLARGA  126 (172)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC
Confidence            5555555555555444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=7.4e-23  Score=112.61  Aligned_cols=90  Identities=22%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||||+|+
T Consensus        49 t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~  121 (169)
T 2y1l_E           49 TPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-----ADVNANDMEGHTPLHLAA  121 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHH
Confidence            445555555555555555544  3334444445555555555555555555555544     445555555555555555


Q ss_pred             HhCCHHHHHHHHhcCcc
Q 038143           84 ALGNEAMCHCMASKDRE  100 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~  100 (103)
                      ..|+.+++++|++.+++
T Consensus       122 ~~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E          122 MFGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            55555555555555443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=9e-23  Score=111.92  Aligned_cols=91  Identities=19%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     .+++.+|..|.||||+|
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  109 (167)
T 3v31_A           37 FTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLACSKGYTDIVKMLLDCG-----VDVNEYDWNGGTPLLYA  109 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC-----CCCCcCCCCCCCHHHHH
Confidence            3566666666666666666666  4445555666666666666666666666666665     55666666666666666


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.|++
T Consensus       110 ~~~~~~~~v~~Ll~~g~~  127 (167)
T 3v31_A          110 VHGNHVKCVKMLLESGAD  127 (167)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            666666666666666554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.8e-23  Score=118.51  Aligned_cols=92  Identities=29%  Similarity=0.299  Sum_probs=86.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHH-hCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.++..  +.+++..|..|+||||+|+..|+.+++++|++. +     ++++.+|..|.||||+
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g-----~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN-----IELNQQNKLGDTALHA  146 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT-----CCCCCCCTTSCCHHHH
T ss_pred             ccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC-----CCccccCCCCCCHHHH
Confidence            4799999999999999999998  667888899999999999999999999999998 7     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~  166 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGART  166 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=9.1e-23  Score=106.99  Aligned_cols=91  Identities=23%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.++..  +.+++..+..|.||||+|+..++.+++++|++.+     .+++.+|..|.||+++|
T Consensus        36 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~l~~A  108 (126)
T 1n0r_A           36 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLA  108 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcC-----CCCcccCCCCCCHHHHH
Confidence            5799999999999999999998  6678888999999999999999999999999998     88899999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|+++|++
T Consensus       109 ~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          109 ARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHHTCC
T ss_pred             HHcCcHHHHHHHHHcCCC
Confidence            999999999999999874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=8.8e-23  Score=114.18  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.++..  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||||+|
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  141 (192)
T 2rfm_A           69 STALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-----ANVNDRNLEGETPLIVA  141 (192)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCTTCCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            4567777777777777777766  4455666666777777777777777777777766     66666777777777777


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.|++
T Consensus       142 ~~~~~~~~v~~Ll~~ga~  159 (192)
T 2rfm_A          142 SKYGRSEIVKKLLELGAD  159 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHCCCC
Confidence            777777777777776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=1.9e-22  Score=110.97  Aligned_cols=93  Identities=24%  Similarity=0.227  Sum_probs=86.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..++|+.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-----ADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHH
Confidence            35799999999999999999999  6678888999999999999999999999999998     8889999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~  106 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV  106 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.89  E-value=7.6e-23  Score=120.00  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|++.|+..++.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.++..|.||||+|+
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~--g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-----advn~~~~~g~t~Lh~A~  193 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDS--NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG-----ASINASNNKGNTALHEAV  193 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-----CCTTCBCTTSCBHHHHHH
T ss_pred             CccccccccChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCccccCCCcHHHHHH
Confidence            456666666666666666665  4566777889999999999999999999999988     889999999999999999


Q ss_pred             HhCCHHHHHHHHhcCccc
Q 038143           84 ALGNEAMCHCMASKDREL  101 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~l  101 (103)
                      ..|+.+++++|++.|+++
T Consensus       194 ~~g~~~~v~~Ll~~Gad~  211 (269)
T 4b93_B          194 IEKHVFVVELLLLHGASV  211 (269)
T ss_dssp             HTTCHHHHHHHHHTTCCS
T ss_pred             HcCCHHHHHHHHHCCCCC
Confidence            999999999999998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=7.5e-23  Score=118.47  Aligned_cols=91  Identities=21%  Similarity=0.179  Sum_probs=84.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc-CCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.++.   +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.++ ..|.||||+
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-----ADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCSSSCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCcCCCCCCCCHHHH
Confidence            589999999999999999998   3568888999999999999999999999999998     8888888 889999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=8.3e-23  Score=112.53  Aligned_cols=92  Identities=23%  Similarity=0.181  Sum_probs=86.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.++++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+|+|
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~A  142 (172)
T 3v30_A           70 ESALSLASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-----ADLTTEADSGYTPMDLA  142 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHHH
Confidence            5899999999999999999988  6778888999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|+++++++
T Consensus       143 ~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A          143 VALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHH
Confidence            9999999999999987764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.89  E-value=1.4e-22  Score=118.58  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=85.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC-CCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR-SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+. .|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----ad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-----ADPTARMYGGRTPLGS  231 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-----CCCcccccCCCCHHHH
Confidence            5899999999999999999998  666777775 4999999999999999999999998     8999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|+++|+++
T Consensus       232 A~~~~~~~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          232 ALLRPNPILARLLRAHGAPE  251 (282)
T ss_dssp             HHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHcCCcHHHHHHHHcCCCc
Confidence            99999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=1.4e-22  Score=111.19  Aligned_cols=93  Identities=23%  Similarity=0.207  Sum_probs=87.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+++|
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~~A  142 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-----ADPTIETDSGYNSMDLA  142 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHH
Confidence            5899999999999999999999  6678888999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcccc
Q 038143           83 AALGNEAMCHCMASKDRELI  102 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l~  102 (103)
                      +..|+.+++++|++++++++
T Consensus       143 ~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          143 VALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC
T ss_pred             HHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999877654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.89  E-value=2.6e-22  Score=118.44  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=86.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|+.|+..|+.+.++.++..  +.+++..+..|.||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENG-----ANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHHHH
Confidence            5799999999999999999999  6678888999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~  132 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHV  132 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHhCCCCC
Confidence            9999999999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=1.3e-22  Score=110.64  Aligned_cols=90  Identities=20%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+. |+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     .+++.+|..|.||||+|
T Consensus        39 ~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  110 (162)
T 1ihb_A           39 RTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-----ADVNIEDNEGNLPLHLA  110 (162)
T ss_dssp             CCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHH
Confidence            356666666 666666666666  4455566677777777777777777777777776     66777777777777777


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.+++
T Consensus       111 ~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A          111 AKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHTTCHHHHHHHHHHSCC
T ss_pred             HHcCCHHHHHHHHHccCC
Confidence            777777777777777664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=4.6e-23  Score=112.19  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC--------------------------------CCCc-HHHHHHHhCC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR--------------------------------SGDT-ALHIAAAAGQ   49 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~--------------------------------~g~t-~l~~a~~~~~   49 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+.                                .|+| |||+|+..|+
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~   90 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   90 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCC
Confidence            4677777777777777777765  333444444                                4555 5555555555


Q ss_pred             hhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           50 TNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        50 ~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      .+++++|++.+     ++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus        91 ~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           91 LDTLVVLHRAG-----ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHHHHHHHT-----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            55555555555     55555555555555555555555555555555543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=1.9e-22  Score=112.86  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++..+..|+||||+|+..++.+++++|++.+     .+++.+|..|.||||+
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-----SNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHHH
Confidence            36899999999999999999998  6667888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~  127 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANV  127 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=1.9e-22  Score=117.06  Aligned_cols=94  Identities=24%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcC-CCchhhhcCCCCCcHHHHHHH--hCChh-------HHHHHHHHhCccccccc---
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENN-PMSREAKLTRSGDTALHIAAA--AGQTN-------IVSELVEIMGENASNVL---   68 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~ll~~~~~~~~~~~---   68 (103)
                      ..+|||.|+..|+.+.++.|++.. .+.+++..|..|+||||+|+.  .++.+       ++++|++.|     +++   
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-----a~~~~~  210 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-----ARLCPT  210 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-----HHHSTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-----CCcccc
Confidence            568999999999999999999921 177888999999999999999  77777       999999999     778   


Q ss_pred             ----ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           69 ----KIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        69 ----~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                          +.+|..|.||||+|+..|+.+++++|+++++.
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence                89999999999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=3.2e-23  Score=112.81  Aligned_cols=73  Identities=15%  Similarity=0.059  Sum_probs=52.6

Q ss_pred             hH-HHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VN-CLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~-~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+ |||.|+..|+.+.++.|++.  +.+++..+..|.||||+|+..++.+++++|++.|     ++++.++..|.||.+-
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-----GGTRGSNHARIDAAEG  150 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-----CCCCccCcCcCccccc
Confidence            35 99999999999999999999  6778889999999999999999999999999998     8999999999999764


Q ss_pred             H
Q 038143           82 A   82 (103)
Q Consensus        82 a   82 (103)
                      +
T Consensus       151 ~  151 (156)
T 1bi7_B          151 P  151 (156)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=2.1e-22  Score=117.02  Aligned_cols=94  Identities=21%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcC-CCchhhhcCCCCCcHHHHHHHhCC---------hhHHHHHHHHhCccccccc---
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENN-PMSREAKLTRSGDTALHIAAAAGQ---------TNIVSELVEIMGENASNVL---   68 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~---   68 (103)
                      ..+|||.|+..|+.++++.|++.. .+.+++..|..|+||||+|+..++         .+++++|++.|     +++   
T Consensus       140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-----a~~~~~  214 (260)
T 3jxi_A          140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-----AKLFPD  214 (260)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-----HHHCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-----cccccc
Confidence            358999999999999999999932 277888999999999999999888         68999999998     766   


Q ss_pred             ----ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           69 ----KIQNDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        69 ----~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                          +.+|..|.||||+|+..|+.+++++|+++++.
T Consensus       215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                77999999999999999999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=117.94  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=83.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHH-HhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..|..|+||||+|+..|+.+++++|++ .+     ++++.+|..|.||||
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~--gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-----CDISLTDRDGSTALM  255 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT-----CCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-----CCCcCcCCCCCCHHH
Confidence            35899999999999999999998  77788899999999999999999999999998 67     889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcC
Q 038143           81 LAAALGNEAMCHCMASKD   98 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~   98 (103)
                      +|+..|+.+++++|+++.
T Consensus       256 ~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHhcc
Confidence            999999999999999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.88  E-value=9.1e-22  Score=112.64  Aligned_cols=100  Identities=19%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             CchHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            1 MEVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         1 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      +..+|||.|+..|+.+.++.++... +.+++..|..|+||||+|+..|+.+++++|++.+.+......+.+|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            3578999999999999999999873 466888899999999999999999999999999822211222667889999999


Q ss_pred             HHHHhCCHHHHHHHHhcCccc
Q 038143           81 LAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+..|+.+++++|++.++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~  101 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASV  101 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHhCCCCC
Confidence            999999999999999998764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.88  E-value=4.3e-22  Score=115.56  Aligned_cols=90  Identities=20%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.|+..  +.+++..+..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|+
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpL~~A~  198 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-----ANKDMQNNREETPLFLAA  198 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHH
T ss_pred             cHHHHHHHcChHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHH
Confidence            445555555555555555544  3344444555555555555555555555555555     555555555555555555


Q ss_pred             HhCCHHHHHHHHhcCcc
Q 038143           84 ALGNEAMCHCMASKDRE  100 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~~  100 (103)
                      ..|+.+++++|++.|++
T Consensus       199 ~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          199 REGSYETAKVLLDHFAN  215 (253)
T ss_dssp             HHTCHHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHHHcCCC
Confidence            55555555555555543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=5.3e-22  Score=107.73  Aligned_cols=85  Identities=22%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||. +..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|+
T Consensus        38 t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~  109 (156)
T 1bd8_A           38 TALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-----ADVNVPDGTGALPIHLAV  109 (156)
T ss_dssp             CHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHH
T ss_pred             cHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHH
Confidence            34444 444444444444443  3333344444444444444444444444444444     444444444444444444


Q ss_pred             HhCCHHHHHHHHh
Q 038143           84 ALGNEAMCHCMAS   96 (103)
Q Consensus        84 ~~~~~~~~~~l~~   96 (103)
                      ..|+.+++++|++
T Consensus       110 ~~~~~~~v~~Ll~  122 (156)
T 1bd8_A          110 QEGHTAVVSFLAA  122 (156)
T ss_dssp             HHTCHHHHHHHHT
T ss_pred             HhChHHHHHHHHh
Confidence            4444444444443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=8.1e-22  Score=106.86  Aligned_cols=86  Identities=20%  Similarity=0.170  Sum_probs=81.1

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+|+
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~  139 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-----ADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHH
Confidence            35799999999999999999988  6778889999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHH
Q 038143           82 AAALGNEAMCHCM   94 (103)
Q Consensus        82 a~~~~~~~~~~~l   94 (103)
                      |+..|+.+++++|
T Consensus       140 A~~~~~~~i~~~L  152 (153)
T 1awc_B          140 SIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=118.73  Aligned_cols=91  Identities=18%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             hHHHHHHHHh---CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            3 VNCLSKFAMT---GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         3 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      .+|||+|+..   |+.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.|||
T Consensus       191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~G~TpL  263 (301)
T 2b0o_E          191 ELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-----ALVGTVNEAGETAL  263 (301)
T ss_dssp             ECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCCSCCCTTSCCHH
T ss_pred             ccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHH
Confidence            5799999997   899999999999  6778889999999999999999999999999998     89999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCcc
Q 038143           80 HLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+|+..|+.+++++|++.+++
T Consensus       264 ~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          264 DIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999988654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1e-21  Score=106.56  Aligned_cols=92  Identities=23%  Similarity=0.272  Sum_probs=85.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|+.|+..|+.+.++.++.. .+.+.+..+..|.||||+ +..|+.+++++|++.+     .+++.+|..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG-----ASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            5799999999999999999998 455688889999999999 9999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~   94 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCS
T ss_pred             HHcCcHHHHHHHHHcCCCC
Confidence            9999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.87  E-value=9.8e-22  Score=108.93  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++||.|+..|+.+.++.++...+ .+++..+..|+||||+|+..|+.+++++|++.+     .+++.++..|.||||+|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-----ARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCCCcCCCCCCHHHHH
Confidence            468999999999999999999853 457788999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.++++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~   98 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADI   98 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCC
Confidence            9999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=8.3e-22  Score=116.21  Aligned_cols=92  Identities=13%  Similarity=0.046  Sum_probs=82.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+..  +.+++..+..|.||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~t~L~~A  132 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-----AQVNGVTADWHTPLFNA  132 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCSSCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            5899999999999999999998  6667888999999999999999999999999988     88888999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.++++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~  151 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASV  151 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCS
T ss_pred             HHcCHHHHHHHHHHCCCCC
Confidence            9999999999999987654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.87  E-value=5.7e-22  Score=115.18  Aligned_cols=92  Identities=23%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC--------------CCCCcHHHHHHHhCChhHHHHHHH---HhCcccc
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLT--------------RSGDTALHIAAAAGQTNIVSELVE---IMGENAS   65 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~ll~---~~~~~~~   65 (103)
                      .+|||.|+..|+.++++.|++.  +.+++..+              ..|+||||+|+..|+.+++++|++   .+     
T Consensus        94 ~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-----  166 (260)
T 3jxi_A           94 QTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-----  166 (260)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-----
Confidence            5899999999999999999998  66677777              589999999999999999999999   77     


Q ss_pred             cccccccCCCCcHHHHHHHhCC---------HHHHHHHHhcCccc
Q 038143           66 NVLKIQNDRGDTAFHLAAALGN---------EAMCHCMASKDREL  101 (103)
Q Consensus        66 ~~~~~~~~~g~tpl~~a~~~~~---------~~~~~~l~~~~~~l  101 (103)
                      ++++.+|..|.||||+|+..++         .+++++|++.|+++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            8899999999999999999887         79999999997754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.87  E-value=1.6e-21  Score=110.98  Aligned_cols=89  Identities=20%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||||+|+
T Consensus        94 t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           94 TPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-----ANKDMQNNREETPLFLAA  166 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHhCcHHHHHHHHHc--CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCcCHHHHHH
Confidence            344444444444444444444  3334444444444444444444444444444444     444444444445555544


Q ss_pred             HhCCHHHHHHHHhcCc
Q 038143           84 ALGNEAMCHCMASKDR   99 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~~   99 (103)
                      ..|+.+++++|++.++
T Consensus       167 ~~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          167 REGSYETAKVLLDHFA  182 (223)
T ss_dssp             HHTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC
Confidence            4444444444444443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=1.3e-21  Score=107.06  Aligned_cols=93  Identities=15%  Similarity=0.178  Sum_probs=85.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|+.|+..|+.+.++.++... +.+.+..+..|+||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-----ADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-----CCCCccCCCCCCHHHHH
Confidence            57999999999999999999864 3556677888999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.++++
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~  101 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV  101 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             HHcCcHHHHHHHHhCCCCC
Confidence            9999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.87  E-value=5.8e-22  Score=115.94  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=85.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCc-hhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMS-REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+..|+.+.++.|+..+... .++..+..|+||||+|+..|+.+++++|++.|     ++++.++..|.||||
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-----AGVLVAERGGHTALH   83 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHH
Confidence            368999999999999999999883332 26778999999999999999999999999998     889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcc
Q 038143           81 LAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~  100 (103)
                      +|+..|+.+++++|++.++.
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~  103 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPS  103 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCS
T ss_pred             HHHHcCCcchhHhhhccCCC
Confidence            99999999999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.87  E-value=1.6e-21  Score=116.87  Aligned_cols=91  Identities=15%  Similarity=0.100  Sum_probs=67.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-----~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG-----ACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            4677777777777777777776  5556667777777777777777777777777776     66777777777777777


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.|++
T Consensus       132 ~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A          132 ASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            777777777777777654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=3.6e-22  Score=114.71  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC----chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccC-CCCc
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPM----SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND-RGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~g~t   77 (103)
                      .+|||.|+..|+.+.++.++..+..    ...+..+..|.||||+|+..|+.+++++|++.+     ++++.++. .|.|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~~g~t  153 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-----ADVNAQEPCNGRT  153 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCC
Confidence            4667777777777777766666321    123455666677777777777777777777666     66666665 6677


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcc
Q 038143           78 AFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        78 pl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |||+|+..|+.+++++|++.|++
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777777777777777666654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.1e-21  Score=114.75  Aligned_cols=93  Identities=23%  Similarity=0.218  Sum_probs=83.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcC-CCchhhhcCCCCCcHHHHHHHhCC---------hhHHHHHHHHhCcccccccc--
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENN-PMSREAKLTRSGDTALHIAAAAGQ---------TNIVSELVEIMGENASNVLK--   69 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~--   69 (103)
                      ..+|||.|+..|+.++++.|++.. .+.+++..|..|+||||+|+..++         .+++++|++.|     ++++  
T Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-----a~~n~~  222 (273)
T 2pnn_A          148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-----AKLHPT  222 (273)
T ss_dssp             CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-----HHHCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-----hhcccc
Confidence            458999999999999999999931 277888999999999999999998         78999999998     6664  


Q ss_pred             -----cccCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 038143           70 -----IQNDRGDTAFHLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        70 -----~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   99 (103)
                           .+|..|.||||+|+..|+.+++++|+++|+
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence                 589999999999999999999999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=9.6e-22  Score=112.56  Aligned_cols=92  Identities=23%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHH----HHHHHHhCccccccc------ccc
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIV----SELVEIMGENASNVL------KIQ   71 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~----~~ll~~~~~~~~~~~------~~~   71 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..|..|+||||+|+..++.+++    ++|++.+     ++.      +.+
T Consensus       121 g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-----~~~~~~~~~~~~  193 (232)
T 2rfa_A          121 GEHPLSFAACVGSEEIVRLLIEH--GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-----GGDHLKSLELVP  193 (232)
T ss_dssp             CSSHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-----CSCSSCCGGGCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-----CchhhhhhhccC
Confidence            46899999999999999999998  777888999999999999999999888    8999988     444      588


Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 038143           72 NDRGDTAFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        72 ~~~g~tpl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |..|.||||+|+..|+.+++++|+++++.
T Consensus       194 ~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          194 NNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.87  E-value=7.9e-22  Score=114.43  Aligned_cols=93  Identities=18%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCC-------------CCcHHHHHHHhCChhHHHHHHH---HhCcccc
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRS-------------GDTALHIAAAAGQTNIVSELVE---IMGENAS   65 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~ll~---~~~~~~~   65 (103)
                      ..+|||.|+..|+.++++.|++.  +.+++..+..             |.||||+|+..|+.+++++|++   .+     
T Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-----  162 (256)
T 2etb_A           90 GHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-----  162 (256)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-----
Confidence            35899999999999999999999  6667777765             9999999999999999999999   77     


Q ss_pred             cccccccCCCCcHHHHHHH--hCCHH-------HHHHHHhcCccc
Q 038143           66 NVLKIQNDRGDTAFHLAAA--LGNEA-------MCHCMASKDREL  101 (103)
Q Consensus        66 ~~~~~~~~~g~tpl~~a~~--~~~~~-------~~~~l~~~~~~l  101 (103)
                      ++++.+|..|.||||+|+.  .++.+       ++++|++.|+++
T Consensus       163 a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            8899999999999999999  78888       999999988764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.87  E-value=2.3e-21  Score=110.82  Aligned_cols=92  Identities=22%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|
T Consensus       107 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  179 (231)
T 3aji_A          107 CTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK-----ASTNIQDTEGNTPLHLA  179 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----CCccccCCCCCCHHHHH
Confidence            3566666666666666666665  4445556666667777777777777777777666     66677777777777777


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       180 ~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          180 CDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCS
T ss_pred             HHCCCHHHHHHHHHCCCCC
Confidence            7777777777777776653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.87  E-value=1.1e-21  Score=115.72  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=43.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCC-CcHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG-DTAFHLA   82 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g-~tpl~~a   82 (103)
                      +|||.|+..|+.+.++.|++.  +.+++..+..|+||||+|+..|+.+++++|++.+     ++++.++..| .||||+|
T Consensus        64 t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~~t~L~~A  136 (285)
T 3kea_A           64 FPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-----WRLMFYGKTGWKTSFYHA  136 (285)
T ss_dssp             CHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----GGGGGCSSSGGGSHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----CCCCccCCCCCCCHHHHH
Confidence            344444444444444444444  3334444444555555555555555555555544     4444444444 4555555


Q ss_pred             HHhCCHHHHHHHHhcCc
Q 038143           83 AALGNEAMCHCMASKDR   99 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~   99 (103)
                      +..|+.+++++|++.++
T Consensus       137 ~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A          137 VMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHTTCHHHHHHHHTTSC
T ss_pred             HHcCCHHHHHHHHhCCC
Confidence            55555555555554444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.87  E-value=1.4e-21  Score=115.30  Aligned_cols=91  Identities=20%  Similarity=0.107  Sum_probs=83.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..  .|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKILLFSG-----LDDSQFDDKGNTALYY  101 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCcHHHH
Confidence            35899999999999999999999  6666665  4899999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~  121 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRL  121 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGG
T ss_pred             HHHcCCHHHHHHHHhcCCCC
Confidence            99999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1e-21  Score=114.94  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC--------------CCCcHHHHHHHhCChhHHHHHHH---HhCccc
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR--------------SGDTALHIAAAAGQTNIVSELVE---IMGENA   64 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~ll~---~~~~~~   64 (103)
                      ..+|||.|+..|+.++++.|++.  +.+++..+.              .|.||||+|+..|+.+++++|++   .+    
T Consensus       101 g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g----  174 (273)
T 2pnn_A          101 GQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP----  174 (273)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC----
Confidence            35899999999999999999998  666777776              79999999999999999999999   88    


Q ss_pred             ccccccccCCCCcHHHHHHHhCC---------HHHHHHHHhcCccc
Q 038143           65 SNVLKIQNDRGDTAFHLAAALGN---------EAMCHCMASKDREL  101 (103)
Q Consensus        65 ~~~~~~~~~~g~tpl~~a~~~~~---------~~~~~~l~~~~~~l  101 (103)
                       ++++.+|..|.||||+|+..|+         .+++++|++.|+++
T Consensus       175 -ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          175 -ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence             8899999999999999999998         79999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.87  E-value=3.1e-21  Score=110.74  Aligned_cols=92  Identities=16%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+ ..|.||||+|+..++.+++++|++.+     ++++.+|..|.||||+
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~  189 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-----ANVNAQMYSGSSALHS  189 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCBCTTSCBHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHH
Confidence            4688888888888888888887  55566666 77888888888888888888888887     7888888889999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus       190 A~~~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          190 ASGRGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHhcCCCC
Confidence            99999999999999887754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.86  E-value=3.6e-21  Score=109.52  Aligned_cols=92  Identities=14%  Similarity=0.102  Sum_probs=86.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+++
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~  197 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF-----ANRDITDHMDRLPRDI  197 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-----CCCccccccCCCHHHH
Confidence            35899999999999999999999  6778888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..++.+++++|++.|..
T Consensus       198 A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          198 AQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCS
T ss_pred             HHHhcchHHHHHHHHcCCC
Confidence            9999999999999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.3e-22  Score=115.60  Aligned_cols=93  Identities=18%  Similarity=0.170  Sum_probs=85.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc-CCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~g~tpl~   80 (103)
                      ..+|||.|+..|+.++++.|++.  +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.++ ..|.||||
T Consensus        54 g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~g~tpL~  126 (229)
T 2vge_A           54 GITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-----AAIFATTLSDGATAFE  126 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCTTCCCSSTTCCTGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcccccCCCCCCHHH
Confidence            36899999999999999999998  6778889999999999999999999999999998     8888886 69999999


Q ss_pred             HH--HHhCCHHHHHHHHhcCccc
Q 038143           81 LA--AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        81 ~a--~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|  +..|+.+++++|++.|+++
T Consensus       127 ~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A          127 KCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             GCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcChHHHHHHHHHcCCCc
Confidence            99  9999999999999987654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.86  E-value=6.7e-21  Score=109.40  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC-CCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR-SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+. .|.||||+|+..|+.+++++|++.|     ++++.+|..|.||+|+
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-----ADVNRVTYQGYSPYQL  190 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCSCCCCTTCCCGGGG
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcccCCCCCHHHH
Confidence            4678888888888888888877  556666665 7788888888888888888888777     7777778888888888


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|++.
T Consensus       191 A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          191 TWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             CTTSSCHHHHHHHHTTSCGG
T ss_pred             HHccCchHHHHHHHHcchhh
Confidence            88888888888888877653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=114.97  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||+|+..|+.++++.|+..  +.+++..+..|.||+|+|+..++.+++++|++.+     ++++.+|..|.||||+|
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-----~~~n~~d~~g~TpL~~A  159 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-----AKPNKKDLSGNTPLIYA  159 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            5799999999999999999988  6667788889999999999999999999999988     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       160 ~~~g~~~~v~~Ll~~gadv  178 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASI  178 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCT
T ss_pred             HHCCCHHHHHHHHHCCCCC
Confidence            9999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.86  E-value=2.7e-21  Score=108.58  Aligned_cols=88  Identities=26%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC-----hhHHHHHHHHhCcccccccccccCCCCcH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ-----TNIVSELVEIMGENASNVLKIQNDRGDTA   78 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~g~tp   78 (103)
                      +|||.|+..|+.+.++.+++.++ .+++..+..|.||||+|+..+.     .+++++|++.|     ++++.+|..|.||
T Consensus       108 t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~  181 (201)
T 3hra_A          108 NALIPAAEKGHIDNVKLLLEDGR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-----ADQSIKDNSGRTA  181 (201)
T ss_dssp             CSHHHHHHTTCHHHHHHHHHHCC-CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-----CCTTCCCTTSCCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCC-CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC-----CCCCccCCCCCCH
Confidence            44555555555555555554421 3344445555555555555544     45555555554     4555555555555


Q ss_pred             HHHHHHhCCHHHHHHHHhc
Q 038143           79 FHLAAALGNEAMCHCMASK   97 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~   97 (103)
                      +|+|+..|+.+++++|++.
T Consensus       182 l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          182 MDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHcCCHhHHHHHHhc
Confidence            5555555555555555544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.86  E-value=4.3e-21  Score=109.70  Aligned_cols=88  Identities=24%  Similarity=0.384  Sum_probs=36.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH
Q 038143            5 CLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA   84 (103)
Q Consensus         5 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~   84 (103)
                      +||.|+..|+.+.++.++...+. ..+..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|+.
T Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            9 MICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-----CCCCCcCCCCCCHHHHHHH
Confidence            44444444444444444443221 12333444444444444444444444444443     3333344444444444444


Q ss_pred             hCCHHHHHHHHhcC
Q 038143           85 LGNEAMCHCMASKD   98 (103)
Q Consensus        85 ~~~~~~~~~l~~~~   98 (103)
                      .|+.+++++|++.+
T Consensus        83 ~~~~~~v~~Ll~~g   96 (231)
T 3aji_A           83 AGXDEIVKALLVKG   96 (231)
T ss_dssp             HTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHcC
Confidence            44444444444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.86  E-value=5e-21  Score=109.19  Aligned_cols=90  Identities=18%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      +|||.|+..|+.+.++.++..+.+.+.+..+..|.||||+|+..++.+++++|++.+     .+++.++..|.||||+|+
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-----ASVRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-----CCccccCCCCCCHHHHHH
Confidence            455555555555555555554322344444555555555555555555555555554     445555555555555555


Q ss_pred             HhCCHHHHHHHHhcC
Q 038143           84 ALGNEAMCHCMASKD   98 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~   98 (103)
                      ..|+.+++++|++.+
T Consensus       149 ~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          149 SVGSLKLIELLCGLG  163 (228)
T ss_dssp             HTTCHHHHHHHHTTT
T ss_pred             HcCCHHHHHHHHhcC
Confidence            555555555555544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=1.4e-21  Score=118.18  Aligned_cols=92  Identities=12%  Similarity=0.123  Sum_probs=53.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC---chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPM---SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      .+|||.|+..|+.+.++.|+..+..   ..++..+..|+||||+|+..|+.+++++|++.|     ++++.+|..|.|||
T Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~g~tpL  248 (364)
T 3ljn_A          174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-----IDVNMEDNEHTVPL  248 (364)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-----CCTTCCCTTSCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHH
Confidence            3556666666666666666655211   114455556666666666666666666666655     55666666666666


Q ss_pred             HHHHHhCCHHHHHHHHhcCc
Q 038143           80 HLAAALGNEAMCHCMASKDR   99 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~~~   99 (103)
                      |+|+..|+.+++++|+++++
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSC
T ss_pred             HHHHHhChHHHHHHHHHcCC
Confidence            66666666666666666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=3.5e-21  Score=118.73  Aligned_cols=91  Identities=19%  Similarity=0.257  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.|+.|++.  +.+++..+..|.||||+|+..|+.+++++|++.+     ++++.++..|.||||+|
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-----AKVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-----CCSSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHH
Confidence            5788888888888888888887  5566777888888888888888888888888887     77778888888888888


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|+++|++
T Consensus        88 ~~~g~~~~v~~Ll~~ga~  105 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNAN  105 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCC
T ss_pred             HHCCCHHHHHHHHhCCCC
Confidence            888888888888887764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.86  E-value=4.4e-21  Score=110.02  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=63.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A  184 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSK--GSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-----CDLHAVNIHGDSPLHIA  184 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHH
Confidence            3566667766776666666666  4455566666777777777777777777777666     66667777777777777


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       185 ~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          185 ARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCT
T ss_pred             HHhCCHhHHHHHHHcCCCC
Confidence            7777777777777776653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.86  E-value=4.1e-21  Score=111.42  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..+..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||+++
T Consensus       157 g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~  229 (253)
T 1yyh_A          157 GKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF-----ANRDITDHMDRLPRDI  229 (253)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCccccccCCCCHHHH
Confidence            36899999999999999999999  6778889999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCc
Q 038143           82 AAALGNEAMCHCMASKDR   99 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~   99 (103)
                      |+..|+.+++++|....+
T Consensus       230 A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          230 AQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHTTCHHHHHHHHC---
T ss_pred             HHHcCCHHHHHHHHHHhh
Confidence            999999999999988754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=2.2e-21  Score=118.02  Aligned_cols=92  Identities=18%  Similarity=0.163  Sum_probs=85.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+... +.+++..|..|.||||+|+..|+.+++++|++.|     ++++.+|..|.|||++|
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----ad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTARQLA  353 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCCHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhc-CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccCCCCCCCCHHHHH
Confidence            57999999999999999999883 2678889999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.+++
T Consensus       354 ~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          354 QANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHTTCHHHHHHHHTTC--
T ss_pred             HHcCCHHHHHHHHhcCcc
Confidence            999999999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.86  E-value=7.3e-21  Score=111.84  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=79.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCC-C------------------------------------chhhhcCCCCCcHHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNP-M------------------------------------SREAKLTRSGDTALHIA   44 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~-~------------------------------------~~~~~~~~~g~t~l~~a   44 (103)
                      ..+|||+|+..|+.+.++.|++.+. .                                    ...+..+..|+||||+|
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A  190 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA  190 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            3589999999999999999998743 1                                    01122345689999999


Q ss_pred             HHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHh-cCccc
Q 038143           45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS-KDREL  101 (103)
Q Consensus        45 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-~~~~l  101 (103)
                      +..|+.+++++|++.|     ++++.+|..|.||||+|+..|+.+++++|++ .|+++
T Consensus       191 ~~~g~~~~v~~Ll~~g-----ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          191 VSHGRVDVVKALLACE-----ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             HHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred             HHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence            9999999999999998     8899999999999999999999999999999 66653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=2.2e-21  Score=117.37  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=87.6

Q ss_pred             hHHHHHHHHhC--CHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            3 VNCLSKFAMTG--QWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         3 ~~~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      .+|||.|+..|  +.++++.|+..  +.+++..|..|.||||+|+..|+.+++++|++.+.+.....++.+|..|.||||
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~  216 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH  216 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH
Confidence            58999999999  99999999999  777888999999999999999999999999999833222338999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCccc
Q 038143           81 LAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+..|+.+++++|++.|+++
T Consensus       217 ~A~~~g~~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          217 WAILINWEDVAMRFVEMGIDV  237 (364)
T ss_dssp             HHHTTTCHHHHHHHHTTTCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.86  E-value=1.1e-20  Score=106.03  Aligned_cols=90  Identities=20%  Similarity=0.289  Sum_probs=63.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      +.+|||.|+..|+.+.++.++...+ .+++..+..|.||||+|+..|+.+++++|++.+     ++++.++..|.||||+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-----ADINLQNSISDSPYLY   78 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHH
Confidence            4567777777777777777776632 346666777777777777777777777777776     6666677777777777


Q ss_pred             HHHhCCHHHHHHHHhc
Q 038143           82 AAALGNEAMCHCMASK   97 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~   97 (103)
                      |+..|+.+++++|++.
T Consensus        79 A~~~~~~~~~~~Ll~~   94 (201)
T 3hra_A           79 AGAQGRTEILAYMLKH   94 (201)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhc
Confidence            7777777777777743

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=5.4e-21  Score=117.91  Aligned_cols=92  Identities=20%  Similarity=0.190  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +..++..+..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus       279 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          279 LTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-----ADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-----CCCCCCCCCCCCHHHHH
Confidence            4678888888888888877777  5567777888888888888888888888888887     78888888888888888


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       352 ~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          352 AQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCS
T ss_pred             HHCChHHHHHHHHHCcCCC
Confidence            8888888888888887654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=5.8e-21  Score=116.24  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|
T Consensus       236 ~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~G-----ad~~~~d~~G~TpL~~A  308 (368)
T 3jue_A          236 ATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHHATILGHTGLACLFLKRG-----ADLGARDSEGRDPLTIA  308 (368)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCc-----CCCCCcCCCCCCHHHHH
Confidence            3566666666666666666666  4555666666666666666666666666666666     66666666666666666


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      +..++.+++++|+..
T Consensus       309 ~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          309 METANADIVTLLRLA  323 (368)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHc
Confidence            666666666666654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.85  E-value=7.4e-21  Score=108.48  Aligned_cols=94  Identities=19%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+    ..+++.+|..|.||||+
T Consensus       107 g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          107 GVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG----KSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT----CCCSCCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCCHhHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC----cccccCcCCCCCCHHHH
Confidence            35799999999999999999998  6778888999999999999999999999999875    25678899999999999


Q ss_pred             HHHhCCHHHHHHHH-hcCccc
Q 038143           82 AAALGNEAMCHCMA-SKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~-~~~~~l  101 (103)
                      |+..|+.+++++|+ +.|+++
T Consensus       181 A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCS
T ss_pred             HHHcCCHHHHHHHHHhcCCCC
Confidence            99999999999999 767654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.85  E-value=6.7e-21  Score=119.62  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhc------CCCCCcHHHHHHH---hCChhHHHHHHHHhCcccccccccccC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKL------TRSGDTALHIAAA---AGQTNIVSELVEIMGENASNVLKIQND   73 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~------~~~g~t~l~~a~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~   73 (103)
                      .+.||.|+..|+.+.++.++..  +.+++..      +..|+||||+|+.   .|+.+++++|++.|     ++++.+|.
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-----a~vn~~d~  205 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-----GHLDAKAA  205 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-----CCTTCCCS
T ss_pred             HHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-----CCCCccCC
Confidence            3579999999999999999999  5555555      7899999999966   89999999999999     99999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           74 RGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        74 ~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      .|.||||+|+..|+.+++++|++.|+++
T Consensus       206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  233 (497)
T 3lvq_E          206 DGNTALHYAALYNQPDCLKLLLKGRALV  233 (497)
T ss_dssp             SSCCHHHHHTTTTCHHHHHHHHHTCCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999998875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.85  E-value=1.4e-20  Score=112.86  Aligned_cols=97  Identities=21%  Similarity=0.132  Sum_probs=84.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCC-CCCcHHHHHHHhCChhHHHHHHHHhCc-------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTR-SGDTALHIAAAAGQTNIVSELVEIMGE-------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~-------------------   62 (103)
                      .++||.|+..|+.+.|+.||+.  +++++..+. .|+||||+|+..|+.+++++|+++|.+                   
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            5789999999999999999999  677777765 599999999999999999999998833                   


Q ss_pred             ---------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 ---------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 ---------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                               ....+++.+|..|.||+|+|+..|+.+++++|++.|+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~  151 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  151 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Confidence                     123456778889999999999999999999999988754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.85  E-value=7.3e-21  Score=113.96  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=86.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..++||.|+..|+.+.++.++... +.+++..|..|.||||+|+..|+.+++++|++.+     .+++.+|..|.||||+
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-----ADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHH
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCcHHHH
Confidence            357999999999999999999863 4667788999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.++++
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~  117 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACV  117 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHCCCHHHHHHHHHCCCCC
Confidence            99999999999999998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.9e-20  Score=110.30  Aligned_cols=94  Identities=23%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCch----hhhcCCCCCcHHHHHHHh---CChhHHHHHHHHhCcccccccccccCCC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSR----EAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQNDRG   75 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~----~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~g   75 (103)
                      ..+|+.|+..|+.+.+..++..+....    ++..+..|+||||+|+..   ++.+++++|++.|     ++++.+|..|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-----a~in~~d~~g  205 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-----GNLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-----SCTTCCCTTC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-----CCccccCCCC
Confidence            468999999999999999999854432    344578899999999999   8999999999998     8999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           76 DTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        76 ~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      .||||+|+..|+.+++++|++.|+++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~  231 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASI  231 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999998865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=1.3e-20  Score=110.14  Aligned_cols=89  Identities=25%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhc-CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKL-TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      ++|+.|+..|+.+.++.+++.  +.+++.. +..|+||||+|+..|+.+++++|++.+     .+++.++..|.||||+|
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-----ADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHH
Confidence            445555555555555555544  2223322 344455555555555555555555544     44444444444555555


Q ss_pred             HHhCCHHHHHHHHhcCc
Q 038143           83 AALGNEAMCHCMASKDR   99 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~   99 (103)
                      +..|+.+++++|++.++
T Consensus        80 ~~~~~~~~v~~Ll~~g~   96 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGA   96 (285)
T ss_dssp             HHHTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            44444444444444443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=1.6e-20  Score=109.72  Aligned_cols=92  Identities=16%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+..|.||||+|+..|+.+++++|++.+     .+++.++..|.||||+|
T Consensus        40 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A  112 (285)
T 1wdy_A           40 WTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG-----ADVNECDFYGFTAFMEA  112 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCBCTTCCBHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCcccCCHHHHH
Confidence            5799999999999999999999  6678888999999999999999999999999998     88899999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.++++
T Consensus       113 ~~~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             HHhCCHHHHHHHHHhCCCc
Confidence            9999999999999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.3e-20  Score=112.09  Aligned_cols=92  Identities=15%  Similarity=0.158  Sum_probs=83.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhh------cCCCCCcHHHHHHHh---CChhHHHHHHHHhCcccccccccccC
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAK------LTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQND   73 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~   73 (103)
                      .++|+.|+..|+.+.++.++..  +.+++.      .+..|+||||+|+..   ++.+++++|++.+     ++++.+|.
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-----advn~~d~  224 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-----GHLDAKAA  224 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-----SCTTCCCT
T ss_pred             HHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-----CCCCCCCC
Confidence            4679999999999999999988  445555      588999999999997   8899999999998     88999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           74 RGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        74 ~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      .|.||||+|+..|+.+++++|++.|+++
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~  252 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV  252 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999998865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=9.5e-21  Score=115.32  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             hHHHHHHHHh-CCHHHHHHHHHcCCCchhhhcC--CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            3 VNCLSKFAMT-GQWDNIVQAYENNPMSREAKLT--RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         3 ~~~l~~a~~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      .++||.|+.. |+.+.++.++..  +.+++..+  ..|.||||+|+..|+.+++++|++.+     ++++.+|..|.|||
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-----advn~~d~~G~TpL  272 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-----ANVNQADSAGRGPL  272 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHH
Confidence            3689999999 999999999998  66677777  89999999999999999999999998     89999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCccc
Q 038143           80 HLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+|+..|+.+++++|++.|+++
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~  294 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADL  294 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHcCcHHHHHHHHHCcCCC
Confidence            9999999999999999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.85  E-value=1.2e-21  Score=113.04  Aligned_cols=92  Identities=15%  Similarity=0.070  Sum_probs=84.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCC-cHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD-TAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~-tpl~   80 (103)
                      ..+|||.|+..|+.++++.|+..  +.+++..|..|+||||+|+..|+.+++++|++.+     ++++.++..|. ||+|
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~~t~l~  142 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG-----AAVFAMTYSDMQTAAD  142 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCSSSCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcceecCCCCcchHH
Confidence            35899999999999999999998  6778889999999999999999999999999998     88999998877 9999


Q ss_pred             HH--HHhCCHHHHHHHHhcCcc
Q 038143           81 LA--AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        81 ~a--~~~~~~~~~~~l~~~~~~  100 (103)
                      +|  +..|+.+++++|++.+++
T Consensus       143 ~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          143 KCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             HCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHhhhccHHHHHHHHHhhhc
Confidence            99  788999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.4e-21  Score=109.34  Aligned_cols=92  Identities=12%  Similarity=-0.012  Sum_probs=65.1

Q ss_pred             hHHHHHHHHhCCH----HHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC------hhHHHHHHHHhCccccccccccc
Q 038143            3 VNCLSKFAMTGQW----DNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ------TNIVSELVEIMGENASNVLKIQN   72 (103)
Q Consensus         3 ~~~l~~a~~~g~~----~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~~   72 (103)
                      ++|||.|+..|+.    ++++.|++.  +++++.++..|+||||+|+..++      .+++++|++.|     ++++.+|
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-----adin~~d  111 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-----ADITALY  111 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-----CCSSSCB
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-----CCCCccC
Confidence            5778888887764    367777776  66777778888888888887776      35677788877     7777777


Q ss_pred             CCCC-cHHHHHHHhC-----CHHHHHHHHh-cCccc
Q 038143           73 DRGD-TAFHLAAALG-----NEAMCHCMAS-KDREL  101 (103)
Q Consensus        73 ~~g~-tpl~~a~~~~-----~~~~~~~l~~-~~~~l  101 (103)
                      ..|. ||||+|+..+     +.+++++|++ .|+++
T Consensus       112 ~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A          112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             GGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             CCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            7777 7777777633     3456777777 66543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.84  E-value=2.3e-20  Score=107.00  Aligned_cols=89  Identities=20%  Similarity=0.184  Sum_probs=73.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     ..++.++..|.||||+|
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-----ALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCCCCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC-----CCCCCCCCCCCcHHHHH
Confidence            5788889988998888888888  5667777888888888888888888888888887     66777777788888888


Q ss_pred             HHhCCHHHHHHHHhcC
Q 038143           83 AALGNEAMCHCMASKD   98 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~   98 (103)
                      +..|+.+++++|++.+
T Consensus        85 ~~~~~~~~~~~Ll~~~  100 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNG  100 (237)
T ss_dssp             HHTTCHHHHHHHHTTT
T ss_pred             HHcCCHHHHHHHHhCC
Confidence            8888888888887776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.84  E-value=2.4e-20  Score=109.95  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+..  +.+++..+..|.||||+|+..|+.+++++|++.+     ++++ .+..|.||||+|
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~-~~~~g~t~L~~A  229 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQRACVKKLLESG-----ADVN-QGKGQDSPLHAV  229 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT-----CCTT-CCBTTBCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC-----CCCC-CCCCCCCHHHHH
Confidence            3566666666666666666666  4455566666777777777777777777777666     5554 366677777777


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.|++
T Consensus       230 ~~~~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          230 VRTASEELACLLMDFGAD  247 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHCCCC
Confidence            777777777777766654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2.2e-20  Score=103.93  Aligned_cols=77  Identities=29%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..+ ..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||+|
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~  148 (183)
T 3deo_A           76 GRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALE  148 (183)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-----CCCcCCCCCCCCHHH
Confidence            35899999999999999999998  66777777 88999999999999999999999998     889999999999999


Q ss_pred             HHHHh
Q 038143           81 LAAAL   85 (103)
Q Consensus        81 ~a~~~   85 (103)
                      +|+..
T Consensus       149 ~A~~~  153 (183)
T 3deo_A          149 LAREI  153 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=3e-21  Score=101.31  Aligned_cols=82  Identities=18%  Similarity=0.054  Sum_probs=73.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..|..|+||||+|+..++.+++++|++.+     ++++.+|..|.||+|+
T Consensus        40 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~  112 (123)
T 3aaa_C           40 GRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG-----ADKTVKGPDGLTAFEA  112 (123)
T ss_dssp             SSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHH
Confidence            35899999999999999999988  6778889999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHH
Q 038143           82 AAALGNEAM   90 (103)
Q Consensus        82 a~~~~~~~~   90 (103)
                      |...+..++
T Consensus       113 A~~~~~~~l  121 (123)
T 3aaa_C          113 TDNQAIKAL  121 (123)
T ss_dssp             CCCHHHHHH
T ss_pred             hCCHHHHHH
Confidence            965444433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.84  E-value=5.6e-20  Score=105.50  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHc--CCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYEN--NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~--~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      .+|||.|+..|+.+.++.+++.  ..+.+++..+..|.||||+|+..|+.+++++|++.+     .+++.++..|.||||
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-----ASPMALDRHGQTAAH   84 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHH
Confidence            3556666666666666555541  013344455555666666666666666666666555     445555555555555


Q ss_pred             HHHHhCCHHHHHHHHhcC
Q 038143           81 LAAALGNEAMCHCMASKD   98 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~   98 (103)
                      +|+..|+.+++++|++.+
T Consensus        85 ~A~~~~~~~~~~~Ll~~~  102 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSA  102 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHcC
Confidence            555555555555555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=7.4e-22  Score=105.28  Aligned_cols=91  Identities=14%  Similarity=0.069  Sum_probs=80.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.|++.  +.+++..+..|.||||+|+..++.+++++|++.+     ++++.+|..|.||+++
T Consensus        43 g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~  115 (137)
T 3c5r_A           43 GWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-----ASRNAVNIFGLRPVDY  115 (137)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCGGGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHH
Confidence            35799999999999999999998  6678888999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCc
Q 038143           82 AAALGNEAMCHCMASKDR   99 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~   99 (103)
                      |+..+..+++++|.+.++
T Consensus       116 A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          116 TDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CCCHHHHHHHSCC-----
T ss_pred             HhhccHHHHHhhcccccc
Confidence            999999999888776654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=1.6e-20  Score=108.73  Aligned_cols=89  Identities=27%  Similarity=0.292  Sum_probs=80.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~   80 (103)
                      ..+|||.|+..|+.++++.|+..  +.+++..+ ..|+||||+|+..|+.+++++|++.+     ++++.+|..|.||||
T Consensus        77 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~g~t~l~  149 (244)
T 3ui2_A           77 GRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALE  149 (244)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHH
Confidence            35899999999999999999999  66777777 88999999999999999999999998     889999999999998


Q ss_pred             HHH----------------HhCCHHHHHHHHhc
Q 038143           81 LAA----------------ALGNEAMCHCMASK   97 (103)
Q Consensus        81 ~a~----------------~~~~~~~~~~l~~~   97 (103)
                      +|+                ..|+.+++++|++.
T Consensus       150 ~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          150 LAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            888                66888999999875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.83  E-value=4.6e-20  Score=108.86  Aligned_cols=93  Identities=27%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhh-------------------------------------------------
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAK-------------------------------------------------   32 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-------------------------------------------------   32 (103)
                      ..+|||.|+..|+.++++.|+..+.  +++.                                                 
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHH
Confidence            3579999999999999999998733  2222                                                 


Q ss_pred             -----------cCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           33 -----------LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        33 -----------~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                                 .+..|.||||+|+..|+.+++++|++.+     ++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus       184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~  258 (299)
T 1s70_B          184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-----YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (299)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Confidence                       2346889999999999999999999988     889999999999999999999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.83  E-value=7.4e-20  Score=109.74  Aligned_cols=55  Identities=11%  Similarity=0.068  Sum_probs=39.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCC---hhHHHHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQ---TNIVSELVEI   59 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~ll~~   59 (103)
                      .+|||+|+..|+.++|+.|++.  +.+++..|..|+||||+|+..|+   .++++.|++.
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            5789999999999998888888  56666777777777777777665   3444444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.3e-21  Score=109.09  Aligned_cols=93  Identities=23%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.++++.|+.. .+.+++..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||+++
T Consensus       106 g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          106 GSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-----ARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCSCCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCccccCCCCCHHHH
Confidence            35899999999999999999876 24568888999999999999999999999999999     8999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..++.++++.|+..++.
T Consensus       180 A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          180 ATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             CCSHHHHHHHC--------
T ss_pred             hcchhHHHHHHHHhccchh
Confidence            9999999999999887653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.83  E-value=5.5e-20  Score=110.29  Aligned_cols=88  Identities=13%  Similarity=0.011  Sum_probs=69.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+... +.+++.+|..|+||||+|+..|+.+++++|+++|     ++++     ..+|||+|
T Consensus       240 ~t~L~~a~~~~~~~~v~~Ll~~~-~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-----Ad~n-----~~~~L~~A  308 (337)
T 4g8k_A          240 KTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-----ASTD-----CGDLVMTA  308 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTST-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-----CSST-----TCCHHHHH
T ss_pred             CCHHHHHHHhhhhHHHHHHHHhc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCC-----CCCHHHHH
Confidence            46888888888888888877652 4667778888888888888888888888888887     5544     34588888


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|+++|+++
T Consensus       309 ~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          309 RRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HHTTCHHHHHHHHHTTCCC
T ss_pred             HHcCCHHHHHHHHHCcCCC
Confidence            8888888888888888753

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.81  E-value=6.1e-19  Score=100.90  Aligned_cols=90  Identities=19%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhh-hcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREA-KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      +|||.|+..|+.+.++.+++.+.  ..+ ..+..|.||||+|+..++.+++++|++.+     .+++.++..|.||||+|
T Consensus        44 t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~~A  116 (240)
T 3eu9_A           44 TLLHWAAINNRIDLVKYYISKGA--IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-----ADPSLIDGEGCSCIHLA  116 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC--CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCC--cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHH
Confidence            45555555555555555555422  122 22233555555555555555555555554     55555555666666666


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.+++
T Consensus       117 ~~~~~~~~~~~Ll~~~~~  134 (240)
T 3eu9_A          117 AQFGHTSIVAYLIAKGQD  134 (240)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCHHHHHHHHHhcCCC
Confidence            666666666666655443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.80  E-value=5.3e-19  Score=101.16  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc-CCCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~g~tpl~   80 (103)
                      ..++|+.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+     ..++..+ ..|.||||
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-----~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG-----AIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCBTTTTBCHHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-----CcchhhcCCcCCChhH
Confidence            35789999999999999999998  6678888999999999999999999999999998     5555444 55999999


Q ss_pred             HHHHhCCHHHHHHHHhcCccc
Q 038143           81 LAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        81 ~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+..|+.+++++|++.++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~  102 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP  102 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=3.8e-20  Score=112.62  Aligned_cols=89  Identities=19%  Similarity=0.118  Sum_probs=54.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHH--------HcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCC
Q 038143            3 VNCLSKFAMTGQWDNIVQAY--------ENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDR   74 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll--------~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   74 (103)
                      .+|||+|+..|+.+.++.++        ..  +.+++..|..|.||||+|+..|+.+++++|++.+     ++++.++..
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~  198 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKS  198 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-----CCCcccCCC
Confidence            45666666666665555444        33  4455566666666666666666666666666665     555566666


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcC
Q 038143           75 GDTAFHLAAALGNEAMCHCMASKD   98 (103)
Q Consensus        75 g~tpl~~a~~~~~~~~~~~l~~~~   98 (103)
                      |.||||+|+..|+.+++++|++.+
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~~  222 (373)
T 2fo1_E          199 ERSALHQAAANRDFGMMVYMLNST  222 (373)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcC
Confidence            666666666666666666665543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.80  E-value=3.8e-20  Score=103.52  Aligned_cols=90  Identities=10%  Similarity=-0.066  Sum_probs=79.9

Q ss_pred             chHHHHHHHHhCC------HHHHHHHHHcCCCchhhhcCCCCC-cHHHHHHHhCC-----hhHHHHHHH-HhCccccccc
Q 038143            2 EVNCLSKFAMTGQ------WDNIVQAYENNPMSREAKLTRSGD-TALHIAAAAGQ-----TNIVSELVE-IMGENASNVL   68 (103)
Q Consensus         2 ~~~~l~~a~~~g~------~~~v~~ll~~~~~~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~ll~-~~~~~~~~~~   68 (103)
                      .++|||.|+..|+      .++++.|++.  +++++.+|..|. ||||+|+..+.     .+++++|++ .|     +++
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-----ad~  147 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-----LQL  147 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-----CCT
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-----CCC
Confidence            4689999999987      5778889988  788999999999 99999999543     468999999 88     999


Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 038143           69 KIQNDRGDTAFHLAAALGNEAMCHCMASKD   98 (103)
Q Consensus        69 ~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   98 (103)
                      +.+|..|.||||+|+..|+.+++++|.+..
T Consensus       148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          148 LIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999998753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.78  E-value=9.2e-20  Score=111.26  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC---chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccc--ccCCCCc
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPM---SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI--QNDRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~g~t   77 (103)
                      .+|||.|+..|+.++|+.|++.+++   .+.+..+   +||||+|+..|+.+++++|++.+     ++++.  .|..|.|
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~g-----a~~~~~~~d~~g~T  200 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELA-----PTEATAMIQAENYY  200 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSC-----GGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcC-----CccchhccCCCCCC
Confidence            3578888888888888888777432   1222222   78888888888888888888877     66555  6777788


Q ss_pred             HHHHHH-HhCCHHHHHHHHhcC
Q 038143           78 AFHLAA-ALGNEAMCHCMASKD   98 (103)
Q Consensus        78 pl~~a~-~~~~~~~~~~l~~~~   98 (103)
                      |||+|+ ..|+.+++++|++.+
T Consensus       201 pL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCC
Confidence            888888 888888888887754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=2.5e-18  Score=86.18  Aligned_cols=61  Identities=28%  Similarity=0.435  Sum_probs=56.5

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      +|+||||+|+..|+.+++++|++.+     .+++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~   61 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV   61 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999998     889999999999999999999999999999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.75  E-value=8.4e-19  Score=107.07  Aligned_cols=93  Identities=18%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCc-hhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccc---cccccCCCCcH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMS-REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNV---LKIQNDRGDTA   78 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~g~tp   78 (103)
                      .+|||.|+..|+.+.|+.+++.+... .....+..|.||||+|+..|+.+++++|++.+     ++   .+..+.. .||
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-----ad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA-----PTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC-----TTTHHHHHSHHH-HHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCC-----CCccccccCCCC-CCH
Confidence            48999999999999999999883311 11233456789999999999999999999987     43   2233333 899


Q ss_pred             HHHHHHhCCHHHHHHHHhcCccc
Q 038143           79 FHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        79 l~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||+|+..|+.+++++|++.|+++
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~  189 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTE  189 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc
Confidence            99999999999999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=7.6e-17  Score=83.07  Aligned_cols=67  Identities=22%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             hhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        30 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ....+..|.|+||+|+..|+.+++++|++.+     .+++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~   83 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANG-----ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV   83 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            4456889999999999999999999999998     889999999999999999999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.67  E-value=1.9e-17  Score=99.34  Aligned_cols=84  Identities=12%  Similarity=0.013  Sum_probs=67.0

Q ss_pred             HHHHHhCCHHHHHHHHHcCCCchhhh-cCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHh
Q 038143            7 SKFAMTGQWDNIVQAYENNPMSREAK-LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAAL   85 (103)
Q Consensus         7 ~~a~~~g~~~~v~~ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   85 (103)
                      |.++..+..+.++.++..  +.+++. .|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|+..
T Consensus       102 ~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-----ad~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-----SNRLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             --CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTBCCTTCCCHHHHHHHS
T ss_pred             HHHHHhhHHHHHHHHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHh
Confidence            444544555555555555  677888 7999999999999999999999999998     99999999999999999999


Q ss_pred             CC---HHHHHHHHhc
Q 038143           86 GN---EAMCHCMASK   97 (103)
Q Consensus        86 ~~---~~~~~~l~~~   97 (103)
                      |+   .++++.|++.
T Consensus       175 g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          175 VNNYDSGTFEALLDY  189 (327)
T ss_dssp             SHHHHTTCHHHHHHH
T ss_pred             cccccHHHHHHHHHh
Confidence            88   4555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.67  E-value=9.9e-17  Score=83.00  Aligned_cols=65  Identities=26%  Similarity=0.396  Sum_probs=60.9

Q ss_pred             hcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        32 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ..|..|+||||+|+..++.+++++|++.+     .+++.+|..|.||||+|+..++.+++++|++.++++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   68 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG-----ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV   68 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT-----CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            46889999999999999999999999998     888999999999999999999999999999998764

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=88.78  E-value=0.65  Score=18.85  Aligned_cols=18  Identities=11%  Similarity=0.056  Sum_probs=12.5

Q ss_pred             HHHHHHHhCCHHHHHHHH
Q 038143            5 CLSKFAMTGQWDNIVQAY   22 (103)
Q Consensus         5 ~l~~a~~~g~~~~v~~ll   22 (103)
                      .+..||..|+++.++.|=
T Consensus        16 qiyvA~seGd~etv~~Le   33 (40)
T 1gp8_A           16 QMDAAASKGDVETYRKLK   33 (40)
T ss_dssp             HHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHH
Confidence            456777788887776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
            +T  GDTALH+A        +  L+          L +QND G TA HLAA LG  + 
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGH-EYLDLQNDLGQTALHLAAILGEAST 60

Query: 91 CHCMAS 96
             + +
Sbjct: 61 VEKLYA 66

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-07
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
          GD+ LH+A    +  +  E++  +  + + +   QN+   T  HLA       +   +
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEAL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 9e-07
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
          GDT LHIA   G    V  LV +  +    +  I N+   T  HLA      ++   +
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLL 59

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-06
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
          +  LH A    +   V EL+          L  ++  G    H + +     +   + SK
Sbjct: 1  NYPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 7e-06
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
              +T LH+AA AG T +   L+    +N + V   +     T  H AA +G+  M   
Sbjct: 30 NVKVETPLHMAARAGHTEVAKYLL----QNKAKV-NAKAKDDQTPLHCAARIGHTNMVKL 84

Query: 94 MASK 97
          +   
Sbjct: 85 LLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 11  MTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI 70
                  +V+    +     AK T+ G + LH AA  G T+IV+ L+    +N ++    
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLL----KNGASP-NE 358

Query: 71  QNDRGDTAFHLAAALGNEAMC 91
            +  G T   +A  LG  ++ 
Sbjct: 359 VSSDGTTPLAIAKRLGYISVT 379

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
          T LH+A+  G   IV  L+    +  ++   + N + +T  H+AA  G+  +   +   
Sbjct: 2  TPLHVASFMGHLPIVKNLL----QRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN 55

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS 96
            +    +AA  G ++ + + + ++  +   V K+       AF LAA  G+  + + +  
Sbjct: 90  SEVICFVAAITGCSSAL-DTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 97  K 97
            
Sbjct: 148 L 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 7e-05
 Identities = 11/55 (20%), Positives = 16/55 (29%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
               L         + +  L+ I G  A           +    LA  LGN+  C
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS 96
              A  +AA  G  ++++ L E      + ++ +       AF LAA  G+  + + +  
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCE---LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

Query: 97  KDRELIS 103
                 +
Sbjct: 183 LAPTEAT 189

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 6e-05
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
              G T L +A       +V  L+E         +   +  G TA  LA  L  + +   
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL 271

Query: 94  MASK 97
           +  +
Sbjct: 272 LCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
           +  L  A      ++V +L+E      +NV   + + G T  H A  +  E +   +
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 11  MTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI 70
                  IV+       S + K    G T + +AA  G+  +V  L++  G +    ++ 
Sbjct: 195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGAS----VEA 249

Query: 71  QNDRGDTAFHLAAALGNEAM 90
            +    TA  LA A  +  +
Sbjct: 250 VDATDHTARQLAQANNHHNI 269

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
           GDT L+IAA  G  +IV  L++      ++   I N  G       A
Sbjct: 259 GDTCLNIAARLGNISIVDALLD----YGADP-FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
              T   ++  +      + +I+  L   +    +N+L  Q+  GDT  ++AA LGN ++
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENL--DLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 91  CHCMASK 97
              +   
Sbjct: 275 VDALLDY 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 28 SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
           ++ K+          A ++G T  V  L+    E  +++    N  G TA H A    N
Sbjct: 31 RKKTKVKFDDGAVFLAACSSGDTEEVLRLL----ERGADI-NYANVDGLTALHQACIDDN 85

Query: 88 EAMCHCM 94
            M   +
Sbjct: 86 VDMVKFL 92

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA 83
             G T LH AA  G+      LV    EN  ++ +  N  G TAF +A 
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILV----ENLCDM-EAVNKVGQTAFDVAD 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.85
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.81
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.81
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.8
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.79
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.79
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.79
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.77
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.76
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.72
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.58
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.49

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.5e-27  Score=122.90  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      -.+||++|+..|+.+.|+.|++.  +.+++..+..|+||||+|+..++.++++++++.+     ++++.+|..|.||||+
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-----~din~~d~~g~tpLh~   74 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-----ADINAPDKHHITPLLS   74 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-----CTTTCCSSSCSCHHHH
T ss_pred             CChHHHHHHHCCCHHHHHHHHHh--hhcccccccccccccccccccccccccccccccc-----ceeeecccccccchhh
Confidence            46899999999999999999998  6778889999999999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |+..|+.+++++|++.|+++
T Consensus        75 A~~~~~~~~v~~Ll~~Gad~   94 (118)
T d1myoa_          75 AVYEGHVSCVKLLLSKGADK   94 (118)
T ss_dssp             HHTTTCCHHHHHHHTTCCCS
T ss_pred             hhhcCchhhhhhhhcccccc
Confidence            99999999999999998765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=122.31  Aligned_cols=92  Identities=25%  Similarity=0.332  Sum_probs=86.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+.|+.|+..|+.+.|+.++++  +.+++.+|..|+||||+|+..++.++++++++.+     .+++.+|..|+||||+|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-----~~~~~~d~~g~tpLh~A   74 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSDGWTPLHCA   74 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHc--CCCccccccccccccccccccccccccccccccc-----cccccccccCccccccc
Confidence            3679999999999999999998  6778899999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|+++|+++
T Consensus        75 ~~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          75 ASCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             HHTTCHHHHHHHHHTTCCT
T ss_pred             chhhHHHHHHHHHHcCCCc
Confidence            9999999999999998765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-24  Score=117.20  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             hHHHHHHHHh---CCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHH
Q 038143            3 VNCLSKFAMT---GQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF   79 (103)
Q Consensus         3 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl   79 (103)
                      .+|||.|+..   |..++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.|||
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g-----ad~~~~d~~g~tpL  118 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK-----ASIEIANESGETPL  118 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHH
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccccccccccccccccccccccC-----ccccccCCCCCCHH
Confidence            5799999975   678999999998  6778899999999999999999999999999998     89999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCcc
Q 038143           80 HLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        80 ~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+|+..|+.+++++|++.++.
T Consensus       119 ~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         119 DIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.7e-23  Score=117.05  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.+++..... ....+..|.||||+|+..++.+++++|+++|     ++++.+|..|.||||+|
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-----adin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-----ADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccchhcccccc-cccccccccccccccccccHHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            58999999999999999999984332 2345678999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..++.+++++|+++|+.
T Consensus       233 ~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         233 LLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HTSSCHHHHHHHHHTTCC
T ss_pred             HHCCCHHHHHHHHHcCCC
Confidence            999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-22  Score=121.87  Aligned_cols=91  Identities=19%  Similarity=0.257  Sum_probs=85.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .||||.||..|+.++|+.+++.  +.+++..|..|.||||+|+..|+.+++++|++.|     ++++.++..|.||+|+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~--g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----adi~~~~~~g~t~L~~A   73 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-----AKVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-----CCSSCCCTTSCCHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHHH
Confidence            3899999999999999999998  6678889999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|+...++
T Consensus        74 ~~~g~~~~~~~Ll~~~~~   91 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNAN   91 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHHhhhc
Confidence            999999999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.8e-23  Score=106.71  Aligned_cols=90  Identities=12%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCC-cHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD-TAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~-tpl~~   81 (103)
                      .++||.|+..|+.+.|+.++++  +.+++.++..|.||+|+| ..|+.+++++|++.+     ++++.++..+. ||||+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVM-MMGSARVAELLLLHG-----AEPNCADPATLTRPVHD   75 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTT-----CCCCCCCTTTCCCHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHc--CCcccccccccccccccc-ccccccccccccccc-----ccccccccccccccccc
Confidence            4678999999999999999987  556666677666666654 356666666666665     55555555543 46666


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..|+.+++++|++.|++
T Consensus        76 A~~~g~~~~v~~Ll~~ga~   94 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGAR   94 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccc
Confidence            6666666666666666544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1.5e-21  Score=108.79  Aligned_cols=85  Identities=12%  Similarity=0.095  Sum_probs=79.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|+.++..|..+.+..++..  +...+..|..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|
T Consensus       124 ~t~l~~~~~~~~~~~~~~l~~~--~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-----ad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         124 KTALHWAAAVNNTEAVNILLMH--HANRDAQDDKDETPLFLAAREGSYEASKALLDNF-----ANREITDHMDRLPRDVA  196 (209)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             CCcchhhcccCcceeeeeeccc--cccccccccccccccchhccccHHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            5799999999999999999988  5567888999999999999999999999999998     88999999999999999


Q ss_pred             HHhCCHHHHHHH
Q 038143           83 AALGNEAMCHCM   94 (103)
Q Consensus        83 ~~~~~~~~~~~l   94 (103)
                      ++.|+.+++++|
T Consensus       197 ~~~~~~~iv~lL  208 (209)
T d1ot8a_         197 SERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHhhc
Confidence            999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.3e-21  Score=102.57  Aligned_cols=93  Identities=24%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCch----hhhcCCCCCcHHHHHHHh---CChhHHHHHHHHhCcccccccccccCCCC
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSR----EAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQNDRGD   76 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~----~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~g~   76 (103)
                      ..|+.|+..++...+.+++..+.+..    ....+..|+||||+|+..   ++.+++++|++.|     ++++.+|..|.
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-----adin~~d~~g~   82 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-----GNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-----SCTTCCCTTCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-----CChhhhhhhhc
Confidence            46789999999999999998833211    112367799999999975   5678999999998     88999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           77 TAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        77 tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      ||||+|+..|+.+++++|++.|+++
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad~  107 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKASI  107 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccccccccccCccc
Confidence            9999999999999999999998865

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-22  Score=104.23  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCC-cHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGD-TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+++|.| ..|+.++++.|++.  +.+++..+..+. ||||+|+..|+.+++++|++.|     ++++.+|..|.||+|+
T Consensus        37 ~t~l~~a-~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          37 RRPIQVM-MMGSARVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-----ARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             CCTTTSS-CTTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-----CCSSCCCTTCCCHHHH
T ss_pred             ccccccc-cccccccccccccc--ccccccccccccccccccccccccccccccccccc-----cccccccCCCCCHHHH
Confidence            4566655 57999999999988  666777787776 6999999999999999999998     8899999999999999


Q ss_pred             HHHhCCHHHHHHHHh
Q 038143           82 AAALGNEAMCHCMAS   96 (103)
Q Consensus        82 a~~~~~~~~~~~l~~   96 (103)
                      |+..|+.+++++|++
T Consensus       109 A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         109 AEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHSS
T ss_pred             HHHcCCHHHHHHHHh
Confidence            999999999999975

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7e-21  Score=107.47  Aligned_cols=92  Identities=22%  Similarity=0.217  Sum_probs=79.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|++.  +.+++..+..|.||||+++..++.+++++|...+     .+++.+|..|.||||+|
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~--g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~-----~~i~~~d~~g~TpL~~A  176 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK-----ASTNIQDTEGNTPLHLA  176 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHH
T ss_pred             CchhhHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCccchhhhhcCCcchhhhhcccc-----ceeeeccCCCCceeccc
Confidence            4788888888888888888877  5667777888888888888888888888888877     78889999999999999


Q ss_pred             HHhCCHHHHHHHHhcCccc
Q 038143           83 AALGNEAMCHCMASKDREL  101 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~l  101 (103)
                      +..|+.+++++|++.|+++
T Consensus       177 a~~g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         177 CDEERVEEAKLLVSQGASI  195 (223)
T ss_dssp             HHTTCHHHHHHHHHTTCCS
T ss_pred             cccCcHHHHHHHHHCCCCC
Confidence            9999999999999988764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.9e-21  Score=101.16  Aligned_cols=96  Identities=18%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc--------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE--------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------   62 (103)
                      .+||+.|++.|+.++|+.||+++  .+.+ .+..|+||||+|+..++.++++.++.....                    
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC--CCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            47999999999999999999984  4444 588899999999999998888877665411                    


Q ss_pred             --------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 --------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 --------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                              ....+.+.++..|.||||+|+..|+.+++++|++.|+++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~  126 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC
Confidence                    234566778889999999999999999999999988764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.3e-21  Score=102.02  Aligned_cols=87  Identities=23%  Similarity=0.272  Sum_probs=76.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|++.++..++.+.++.+++.  +.+++..|..|+||||+|+..|+.+++++|+ .+     ++++.+|..|.||||+|
T Consensus        69 ~~~l~~~~~~~~~~~~~~~l~~--~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-----~~~~~~d~~G~TpL~~A  140 (156)
T d1bd8a_          69 TSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE-----SDLHRRDARGLTPLELA  140 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-----SCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccccccc--ccccccccCCCCeeecccccccccccccccc-cc-----ccccccCCCCCCHHHHH
Confidence            4578899999999998888888  5567778889999999999999999999877 45     77889999999999999


Q ss_pred             HHhCCHHHHHHHHhc
Q 038143           83 AALGNEAMCHCMASK   97 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~   97 (103)
                      +..|+.+++++|+++
T Consensus       141 ~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         141 LQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHSCCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHhh
Confidence            999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.3e-21  Score=110.21  Aligned_cols=92  Identities=18%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC-chhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPM-SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||+|+..|+.+.++.|++.+.+ ..++.++..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-----a~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-----AGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc-----ccccccccccchhhhh
Confidence            5899999999999999999987332 226677899999999999999999999999998     8999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCc
Q 038143           82 AAALGNEAMCHCMASKDR   99 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~   99 (103)
                      |+..++.+++++|++...
T Consensus        85 A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCC
T ss_pred             hhccCchHHHHHHHhhcc
Confidence            999999999999987653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=9.2e-21  Score=106.85  Aligned_cols=56  Identities=20%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHh
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM   60 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~   60 (103)
                      +|||+||..|+.+.++.++...+ ..++.+|..|+||||+|+..|+.+++++|++.+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~g   57 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM   57 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHcCCccccchhhhhh
Confidence            69999999999999999998754 467888999999999999999999999999886

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=102.69  Aligned_cols=92  Identities=15%  Similarity=0.070  Sum_probs=80.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccC-CCCcHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND-RGDTAFH   80 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~g~tpl~   80 (103)
                      ..+|||+|+..|+.+.++.+++.  +.+.+..|..|+||||+|+..|+.+++++|++.|     ++++.++. .+.||++
T Consensus        34 g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-----a~v~~~~~~~~~~~~~  106 (130)
T d1ycsb1          34 GITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG-----AAVFAMTYSDMQTAAD  106 (130)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCSSSCCCHHH
T ss_pred             ccccccccccccccccccccccc--ccccccccccCcccccccchhhHHHHHHHHHHcC-----CCcccccCCCCCCHHH
Confidence            36899999999999999999998  6678889999999999999999999999999998     88887764 5888876


Q ss_pred             HH--HHhCCHHHHHHHHhcCcc
Q 038143           81 LA--AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        81 ~a--~~~~~~~~~~~l~~~~~~  100 (103)
                      ++  ...|+.+++++|++.+.+
T Consensus       107 ~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1         107 KCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHhHHHh
Confidence            65  567899999999886544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-20  Score=104.73  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=83.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHc--CCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYEN--NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~--~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~------------------   62 (103)
                      .||||.||..|+.+.++.|+..  ..+.+++.+|..|+||||+|+..|+.+++++|++.+..                  
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~   83 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH   83 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999988752  12567888899999999999999999999999998733                  


Q ss_pred             --------------------------------------------------------------------------------
Q 038143           63 --------------------------------------------------------------------------------   62 (103)
Q Consensus        63 --------------------------------------------------------------------------------   62 (103)
                                                                                                      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~  163 (228)
T d1k1aa_          84 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL  163 (228)
T ss_dssp             TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence                                                                                            


Q ss_pred             -ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 -NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 -~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                       ......+.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus       164 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~  203 (228)
T d1k1aa_         164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  203 (228)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             hhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC
Confidence             123445667888999999999999999999999998764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=5e-22  Score=118.59  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             hHHHHHHHHhCCHHHHHH---HHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCccccccccccc--CCCCc
Q 038143            3 VNCLSKFAMTGQWDNIVQ---AYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN--DRGDT   77 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~---ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~g~t   77 (103)
                      .++|+.|+..|+.+.++.   ++..  +.+++..+..|+||||+|+..|+.+++++|++.|     ++++..+  ..|.|
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g-----~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA-----PTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC-----TTTHHHHHSHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCccccccccCCCC
Confidence            578899999999877654   4444  6678888888999999999999999999999987     6666655  45889


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcc
Q 038143           78 AFHLAAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        78 pl~~a~~~~~~~~~~~l~~~~~~  100 (103)
                      |||+|+..|+.+++++|++.++.
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCc
Confidence            99999999999999999988764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=113.35  Aligned_cols=86  Identities=21%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+||+.++..++.+.++.++..  +.+++.+|..|.||||+|++.|+.+++++|+++|     ++++.+|..|.||||+|
T Consensus       298 ~t~L~~~~~~~~~~~~~~ll~~--g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-----Ad~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         298 YTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCHHHHH
T ss_pred             cccchhhcccCcceeeeeeccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            4578888888888888888887  6678888999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHH
Q 038143           83 AALGNEAMCHCMA   95 (103)
Q Consensus        83 ~~~~~~~~~~~l~   95 (103)
                      ++.|+.+++++|.
T Consensus       371 ~~~~~~~iv~~L~  383 (408)
T d1n11a_         371 KRLGYISVTDVLK  383 (408)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            9999999998764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.2e-20  Score=99.13  Aligned_cols=83  Identities=20%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHH
Q 038143            5 CLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA   84 (103)
Q Consensus         5 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~   84 (103)
                      +++.++...+.+.++.++..  +.+.+..+..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|+.
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-----ad~~~~d~~g~Tpl~~A~~  142 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-----ADVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccceeeeccccc--CCccccccccCchHHHhhhhcchhheeeeccccc-----cCCcccCCCCCCHHHHHHH
Confidence            44455555555555555444  4456667889999999999999999999999998     8999999999999999999


Q ss_pred             hCCHHHHHHH
Q 038143           85 LGNEAMCHCM   94 (103)
Q Consensus        85 ~~~~~~~~~l   94 (103)
                      .|+.+++++|
T Consensus       143 ~g~~eiv~lL  152 (153)
T d1awcb_         143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHhC
Confidence            9999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.8e-20  Score=106.96  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCC------------------------------------CchhhhcCCCCCcHHHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNP------------------------------------MSREAKLTRSGDTALHIAAA   46 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~------------------------------------~~~~~~~~~~g~t~l~~a~~   46 (103)
                      .+|||.|+..|+.++++.|+.+..                                    +.+++.++..|.||||+|+.
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~  228 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh
Confidence            468999999999999888886421                                    11223356789999999999


Q ss_pred             hCChhHHHHHHHH-hCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           47 AGQTNIVSELVEI-MGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        47 ~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      .++.+++++|++. +     .+++.+|..|.||||+|++.|+.+++++|++.|+++
T Consensus       229 ~~~~~~v~~lL~~~g-----~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         229 KKHLGLVQRLLEQEH-----IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             TTCHHHHHHHHHSSS-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             cCcHHHHHHHHHcCC-----CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999985 5     789999999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=4.4e-22  Score=102.89  Aligned_cols=76  Identities=17%  Similarity=0.026  Sum_probs=70.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      ..+|||.|+..|+.+.++.++..  +.+++.+|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus        35 g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G-----ad~~~~d~~G~t~l~~  107 (118)
T d1myoa_          35 GRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG-----ADKTVKGPDGLTALEA  107 (118)
T ss_dssp             SCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTC-----CCSSSSSSSTCCCCCT
T ss_pred             ccccccccccccccccccccccc--cceeeecccccccchhhhhhcCchhhhhhhhccc-----ccceeeCCCCCCHHHH
Confidence            35799999999999999999998  6778889999999999999999999999999998     8999999999999999


Q ss_pred             HHH
Q 038143           82 AAA   84 (103)
Q Consensus        82 a~~   84 (103)
                      |..
T Consensus       108 a~~  110 (118)
T d1myoa_         108 TDN  110 (118)
T ss_dssp             CSS
T ss_pred             HhH
Confidence            843

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=1.7e-19  Score=104.73  Aligned_cols=91  Identities=20%  Similarity=0.203  Sum_probs=84.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++|+.||..|+.+.|+.||++  +++++..|..|+||||+|+..|+.+++++|++.+     .+....+..+.+|++.+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~-----~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENG-----ANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeecccc-----ccccccccccccccccc
Confidence            5789999999999999999999  7788899999999999999999999999999998     77778889999999999


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..++.++++.|++.+..
T Consensus       114 ~~~~~~~~~~~l~~~~~~  131 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAH  131 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCC
T ss_pred             ccccccchhhcccccCcc
Confidence            999999999999988653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=7.4e-20  Score=105.38  Aligned_cols=88  Identities=18%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++||.++..++.+.+..++... +.+.+..|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-----adin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTARQLA  261 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCCHHHHH
T ss_pred             CCccccccccccccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-----CCCCCcCCCCCCHHHHH
Confidence            46899999999999998877664 4567778999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHHh
Q 038143           83 AALGNEAMCHCMAS   96 (103)
Q Consensus        83 ~~~~~~~~~~~l~~   96 (103)
                      +..|+.+++++|.+
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.6e-20  Score=97.93  Aligned_cols=87  Identities=20%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHH
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAA   83 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~   83 (103)
                      ++||.|+..|+.+.|+.|+++  +.+++..|..|.||||+|+ .++.+++++|++.+     ++++.++..|.+|++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~-----a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG-----ANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-cccccccccccccc-----cccccccccCcccccccc
Confidence            799999999999999999998  6778889999999999875 78999999999988     445555555555555555


Q ss_pred             HhCCHHHHHHHHhcC
Q 038143           84 ALGNEAMCHCMASKD   98 (103)
Q Consensus        84 ~~~~~~~~~~l~~~~   98 (103)
                      ..++.+.++++++.+
T Consensus        75 ~~~~~~~~~~l~~~~   89 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQ   89 (156)
T ss_dssp             HHTCHHHHHHHHHTT
T ss_pred             ccccccccccccccc
Confidence            555555555554443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.9e-20  Score=103.82  Aligned_cols=89  Identities=20%  Similarity=0.112  Sum_probs=69.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHH-hCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+|||.|+..|+.+.++.++...+ ..++..|..|+||||+|+..|+.+++++|++. |     ++++.+|..|.||||+
T Consensus       139 ~t~l~~a~~~~~~~~~~~Ll~~~~-~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g-----ad~~~~d~~g~t~l~~  212 (229)
T d1ixva_         139 QIPLHRAASVGSLKLIELLCGLGK-SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-----AEYDLVDNKGAKAEDV  212 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTC-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----CCSCCCCTTSCCTGGG
T ss_pred             CCccchhhhccccccccccccccc-ccccccccccCCchhhhcccccHHHHHHHHHhcC-----CCCCCcCCCCCCHHHH
Confidence            568888888888888888877632 34666788888888888888888888888864 5     7788888888888888


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+.   .+++++|+++|++
T Consensus       213 A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         213 ALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CSC---HHHHHHHHHHCCC
T ss_pred             Hhh---HHHHHHHHHcCCC
Confidence            773   4788888888765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.3e-19  Score=106.27  Aligned_cols=97  Identities=18%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCCh-------hHHHHHHH-----------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQT-------NIVSELVE-----------------   58 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~-------~~~~~ll~-----------------   58 (103)
                      .+|||+|+..|+.+.|+.|++.  +++++.+|..|+||||.|+..++.       ++++.+..                 
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~  185 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  185 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHH
Confidence            4899999999999999999998  778889999999999999976541       22222211                 


Q ss_pred             -------------------------HhCc--------------------------------ccccccccccCCCCcHHHH
Q 038143           59 -------------------------IMGE--------------------------------NASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus        59 -------------------------~~~~--------------------------------~~~~~~~~~~~~g~tpl~~   81 (103)
                                               .+..                                .....++.+|..|+||||+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~  265 (301)
T d1sw6a_         186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI  265 (301)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHH
T ss_pred             HHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHH
Confidence                                     1100                                0011157789999999999


Q ss_pred             HHHhCCHHHHHHHHhcCccc
Q 038143           82 AAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~l  101 (103)
                      |++.|+.+++++|++.|+++
T Consensus       266 A~~~g~~~iv~~Ll~~GAd~  285 (301)
T d1sw6a_         266 AARLGNISIVDALLDYGADP  285 (301)
T ss_dssp             HHHHCCHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999998864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=4.7e-21  Score=114.37  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.++|+.|++.++..+....+..|+||||+|+..|+.+++++|++.+...  ...+..+..+.||++.|
T Consensus       127 ~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~~~~~t~l~~A  204 (346)
T d2ajaa1         127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE--ATAMIQAENYYAFRWAA  204 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG--HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc--cccccccCCCcchhhHH
Confidence            5899999999999999999999544333334457999999999999999999999987111  12344556677888899


Q ss_pred             HHhCCHHHHHHHHhcCcc
Q 038143           83 AALGNEAMCHCMASKDRE  100 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~  100 (103)
                      +..|+.+++++|++.|++
T Consensus       205 ~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         205 VGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             STTCCHHHHHHHTTSHHH
T ss_pred             hhcCHHHHHHHHHhCCCC
Confidence            999999999999998754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.1e-19  Score=100.12  Aligned_cols=97  Identities=21%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc---------------------
Q 038143            4 NCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE---------------------   62 (103)
Q Consensus         4 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~---------------------   62 (103)
                      ..++.++..|+.+.++.++...+ ..++.+|..|+||||+|+..|+.+++++++..+..                     
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~-~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCC-CcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            46788899999999988888753 45778899999999999999999888888877622                     


Q ss_pred             -------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 -------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 -------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                             ....+++.+|..|.||||+|+..|+.+++++|++.|.++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~  129 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP  129 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC
Confidence                   123566788999999999999999999999999987653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=101.84  Aligned_cols=91  Identities=16%  Similarity=0.151  Sum_probs=79.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhh-cCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAK-LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+||+.|+..|+.+.+..++..  +...+. .+..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||||+
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~--~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-----ad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-----ADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCSCCCCTTCCCGGGG
T ss_pred             chhhhHHhhcCChhheeeeccc--CcccccccccCCCCccccccccccHHHHHHHHhcC-----CcccccCCCCCCHHHH
Confidence            5799999999999999998888  333443 3567999999999999999999999998     8999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcc
Q 038143           82 AAALGNEAMCHCMASKDRE  100 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~~~~  100 (103)
                      |+..++.+++++|++...+
T Consensus       185 A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         185 TWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTSSCHHHHHHHHTTSCG
T ss_pred             HHHCCCHHHHHHHHHcCCc
Confidence            9999999999999887654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.79  E-value=4e-20  Score=106.51  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=80.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcC------CCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCC
Q 038143            2 EVNCLSKFAMTGQWDNIVQAYENN------PMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG   75 (103)
Q Consensus         2 ~~~~l~~a~~~g~~~~v~~ll~~~------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g   75 (103)
                      .++|||+|+..|+.+.|+.|+...      .|++++.+|..|+||||+|+..|+.+++++|+++|     ++++.++..|
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-----ad~n~~~~~g  107 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKSE  107 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTC
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccc-----cccccccccc
Confidence            368999999999998887775431      15678889999999999999999999999999998     8899999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhc
Q 038143           76 DTAFHLAAALGNEAMCHCMASK   97 (103)
Q Consensus        76 ~tpl~~a~~~~~~~~~~~l~~~   97 (103)
                      .||+++|...++.+++..+...
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTS
T ss_pred             cccccchhhhcchhhhhhhhhc
Confidence            9999999999999999887654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-18  Score=92.89  Aligned_cols=90  Identities=24%  Similarity=0.318  Sum_probs=73.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++++.++..+..+.+..++..  +...+..+..|.+|+|+|+..++.+++++|++++    ..+.+.+|..|.||||+|
T Consensus        67 ~~~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~----~~~~~~~d~~g~TpL~~A  140 (156)
T d1ihba_          67 FAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT----ASNVGHRNHKGDTACDLA  140 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc----cccccccCCCCCCHHHHH
Confidence            3567777777777777777766  4446667788899999999999999999999886    136788899999999999


Q ss_pred             HHhCCHHHHHHHHhcC
Q 038143           83 AALGNEAMCHCMASKD   98 (103)
Q Consensus        83 ~~~~~~~~~~~l~~~~   98 (103)
                      ++.++.+++++|+++|
T Consensus       141 ~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         141 RLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHTTCHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHhcC
Confidence            9999999999999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.77  E-value=1.1e-19  Score=105.51  Aligned_cols=83  Identities=23%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .+|||.|+..|+.+.++.|+..  +.+++..+..|+||||+|+..|+.+++++|+++|     ++++.+|..|.||||+|
T Consensus       200 ~t~L~~a~~~~~~~~~~~Ll~~--g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-----adv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         200 GTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-----CDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCTTTSC
T ss_pred             CChhhHHHHcCChhhhcccccc--eecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            5799999999999999999988  6678888999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHHHHHh
Q 038143           83 AALGNEAMCHCMAS   96 (103)
Q Consensus        83 ~~~~~~~~~~~l~~   96 (103)
                      +.    +++++|.+
T Consensus       273 ~e----~~~~~L~~  282 (291)
T d1s70b_         273 DE----DILGYLEE  282 (291)
T ss_dssp             CS----GGGHHHHH
T ss_pred             HH----HHHHHHHH
Confidence            75    45555543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-18  Score=91.48  Aligned_cols=92  Identities=24%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc--------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE--------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------   62 (103)
                      .+.|+.|+..|+.+.|+.++.+. +.+++..|..|+||||+|+ .++.+++++|++.+.+                    
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            46799999999999999999874 3567788889999999875 4778888888877622                    


Q ss_pred             --------ccccccccccCCCCcHHHHHHHhCCHHHHHHHHh
Q 038143           63 --------NASNVLKIQNDRGDTAFHLAAALGNEAMCHCMAS   96 (103)
Q Consensus        63 --------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   96 (103)
                              ..+.+++.+|..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~  122 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccCCCCeeeccccccccccccccccc
Confidence                    1234556677777788888888888887777763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=7.4e-18  Score=93.66  Aligned_cols=61  Identities=31%  Similarity=0.315  Sum_probs=56.5

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                      .|.|+|++++..+...+++.++..+     .+++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus       122 ~~~t~l~~~~~~~~~~~~~~l~~~~-----~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         122 SGKTALHWAAAVNNTEAVNILLMHH-----ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR  182 (209)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCcchhhcccCcceeeeeecccc-----ccccccccccccccchhccccHHHHHHHHHHCCCCC
Confidence            6789999999999999999999987     788899999999999999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-19  Score=99.58  Aligned_cols=83  Identities=18%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA   82 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a   82 (103)
                      .++++.|+..+....++.++..  +...+.+|..|.||||+|+..|+.+++++|++.|     ++++.+|..|.||||+|
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-----ad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-----ADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCTTTTC
T ss_pred             hhHHHHHHHhhhhhhhhhhhhh--ccccccccccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            5789999999999999999998  5567788999999999999999999999999998     89999999999999999


Q ss_pred             HHhCCHHHHH
Q 038143           83 AALGNEAMCH   92 (103)
Q Consensus        83 ~~~~~~~~~~   92 (103)
                      ++.|+.++++
T Consensus       218 ~~~~~~divk  227 (228)
T d1k1aa_         218 RSRRVIDILR  227 (228)
T ss_dssp             SSHHHHHHHT
T ss_pred             HhCCCccccC
Confidence            9999998874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.1e-18  Score=94.51  Aligned_cols=97  Identities=21%  Similarity=0.160  Sum_probs=63.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcCCCCCcHHHHHHHhCChhHHHHHHHHhCc--------------------
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE--------------------   62 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------   62 (103)
                      .+|||+|+..|+.++++.+++.  +.+++..+..|.|||++++..++.++++.++..+..                    
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~--g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~  117 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL  117 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHH
T ss_pred             Cccccccccccccccccccccc--cccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhH
Confidence            4667777777777666666665  445555566666666666666666666655554311                    


Q ss_pred             --------------ccccccccc-cCCCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 038143           63 --------------NASNVLKIQ-NDRGDTAFHLAAALGNEAMCHCMASKDREL  101 (103)
Q Consensus        63 --------------~~~~~~~~~-~~~g~tpl~~a~~~~~~~~~~~l~~~~~~l  101 (103)
                                    .....++.. +..|.||||+|+..|+.+++++|++.|+++
T Consensus       118 a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~  171 (221)
T d1iknd_         118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV  171 (221)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS
T ss_pred             HhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcc
Confidence                          001333333 356899999999999999999999988764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-14  Score=82.30  Aligned_cols=88  Identities=25%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCchhhhcC-CCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHH
Q 038143            3 VNCLSKFAMTGQWDNIVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHL   81 (103)
Q Consensus         3 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~   81 (103)
                      .+.|+.|+..|+.+.|+.|+++  +.+++.++ ..|+||||+|+..|+.+++++|++.+     ......+..+.+|.+.
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~-----~~~~~~~~~~~~~~~~   78 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-----ADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccc-----ccccccccccchhhHH
Confidence            5789999999999999999999  56666554 57999999999999999999999987     4455555555666666


Q ss_pred             HHHhCCHHHHHHHHhc
Q 038143           82 AAALGNEAMCHCMASK   97 (103)
Q Consensus        82 a~~~~~~~~~~~l~~~   97 (103)
                      +...+..+....+++.
T Consensus        79 ~~~~~~~~~~~~~~~~   94 (285)
T d1wdya_          79 AAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             HHHHTCHHHHHHHHHT
T ss_pred             HhhcCCccccchhhhh
Confidence            6666655555555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.6e-14  Score=82.84  Aligned_cols=55  Identities=18%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             chhhhc-CCCCCcHHHHHHHhCChhHHHHHHHHhCcccccccccccCCCCcHHHHHHHhCC
Q 038143           28 SREAKL-TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN   87 (103)
Q Consensus        28 ~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~   87 (103)
                      .+++.. |..|+||||+|+..|+.+++++|++.|     ++++.+|..|.||||.|+..++
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-----ad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-----SNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCcCCcccccHHHHhhhccc
Confidence            445544 899999999999999999999999998     9999999999999999998765