Citrus Sinensis ID: 038149

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840----
Protein Sequence
TFVQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDESAIDM
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEcccccccccccEEEccccEEEEEccccHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccEEEccccEEcccccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccEEEcccccccccccEEEEEEEEEcccEEEEccccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccHHHHccccccEEEccccccccccccHHHHHHHccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccHHHHHcccccEEcEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEccccccccccccccccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEEccccccccccHcHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHcHHHHHHHcccccccccccccHHHcccccEEEEcccccccccccHHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
tfvqmhapkscldserIGLLEIKAFIKSVSDMQYADAILVSWVdnrtsdcctwerikcnattgRVMELSLDsaiqvdsddvndgfpiinmslfvpfqelhvldlsdnrfegweenkayntsrSLKQLKILNIGYNSFNESLVPLLTSLTSltslflqgnsfsegfkhnkglvnlrnlevldlsgnritgslIMQGICDLKNLVelninenefdgllpqclsnltylRVLDlssnklsgnlplsvIANLTSLEYLSLFdnhfqesfplsvlanhsrleVFQLSRLQvetenfpwlpkfqLKVLNLrhcnisgtiprflqyqydfryidlsdnnlvdtfptwllqnntKLEIMFLFNNfltgnlqlpnskrnlphlvisnnsfigklpenfglilPELVYLdmsqnsfegsippsmgYMERLLFLDlssnnfsrdlpkhfltscvslefmnlshnyfdgqifpkYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDvsnnmlsgqlprwigkfsNLDVLLMSRNSFEGDVSVQLSNLEVARILDisenklygplefssnhsslrylfphnnslsgtipnallqssqlttldlrdnefsGNIAHLINEDSNLRALLLRGnnlqgnipeplchLRKLAIVDISyntlngpipscftNISLWMEKgnyynstlslalpaednresSQRVEVKFMAKNRYESYKGDVLKYmtgldlssneltgdipseigylgEIHALNlsnnflsgsiprsfsnlkmtesmdlsynklngqippelgeLSFLAIFNVSynnlsgtvpnkgqfanfdesnyrgnpylcgpavrkncsselpptpatsaeedesaidm
Flexible Loop (DISEMBL)
tfvqmhapkscldseriGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIkcnattgrVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENkayntsrslkQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLAlpaednressQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSselpptpatsaeedesaidm
Low Complexity Region (SEG)
TFVQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPlltsltsltslFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERllfldlssnnfsRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAllqssqlttlDLRDNEFSGNIAHLINEDSnlralllrgnnlqgnIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDESAIDM
Disordered region (IsUnstruct)
**********CLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLAL*************VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSF**********LSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPA**************************
Disordered Region (DISOPRED)
TF*********LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME**********LALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGP*************************DM
Disordered Region (DISEMBL)
*********SCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALP*********RVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCS********************
Disordered Region (DISPRO)
TFVQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRK***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TFVQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDESAIDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	844	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.813	0.585	0.309	4e-69
Q9C9H7	847	Receptor-like protein 12	no	no	0.893	0.890	0.297	9e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.917	0.619	0.293	5e-65
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.752	0.576	0.325	4e-62
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.780	0.526	0.297	5e-59
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.798	0.565	0.293	5e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.728	0.541	0.320	1e-57
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.740	0.536	0.301	4e-57
Q9LP24	1120	Probable leucine-rich rep	no	no	0.830	0.625	0.288	3e-55
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.622	0.523	0.329	4e-54

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  263 bits (673), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 240/776 (30%), Positives = 361/776 (46%), Gaps = 89/776 (11%)

Query: 100 HVLDLS--DNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQ 157
           HV+ +S  + + EG       N    L  L++L++  NSF   +   +  LT L  L L 
Sbjct: 73  HVVSVSLLEKQLEGVLSPAIAN----LTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILY 128

Query: 158 GNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP 217
            N FS       G+  L+N+  LDL  N ++G  + + IC   +LV +  + N   G +P
Sbjct: 129 LNYFSGSIP--SGIWELKNIFYLDLRNNLLSGD-VPEEICKTSSLVLIGFDYNNLTGKIP 185

Query: 218 QCLSNLTYLRVLDLSSNKLSGNLPLSV--IANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           +CL +L +L++   + N L+G++P+S+  +ANLT L+   L  N      P     N   
Sbjct: 186 ECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLD---LSGNQLTGKIPRD-FGNLLN 241

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
           L+   L      TEN                  + G IP  +        ++L DN L  
Sbjct: 242 LQSLVL------TENL-----------------LEGDIPAEIGNCSSLVQLELYDNQLTG 278

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK---RNLPHLVISNNSFIGKLPENFGLI 392
             P  L  N  +L+ + ++ N LT ++  P+S      L HL +S N  +G + E  G  
Sbjct: 279 KIPAEL-GNLVQLQALRIYKNKLTSSI--PSSLFRLTQLTHLGLSENHLVGPISEEIGF- 334

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHF-------------- 438
           L  L  L +  N+F G  P S+  +  L  L +  NN S +LP                 
Sbjct: 335 LESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query: 439 ---------LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLN 489
                    +++C  L+ ++LSHN   G+I P+      L F+ +  N FTG +   + N
Sbjct: 395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFN 453

Query: 490 ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN 549
            S+L  L V++N L+G L   IGK   L +L +S NS  G +  ++ NL+   IL +  N
Sbjct: 454 CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSN 513

Query: 550 KLYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN 607
              G  P E S N + L+ L  ++N L G IP  +     L+ LDL +N+FSG I  L +
Sbjct: 514 GFTGRIPREMS-NLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query: 608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP----SCFTNISLWMEK 663
           +  +L  L L+GN   G+IP  L  L  L   DIS N L G IP    +   N+ L++  
Sbjct: 573 KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL-- 630

Query: 664 GNYYNSTLSLALPAEDNR-ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722
            N+ N+ L+  +P E  + E  Q +++     +          K +  LD S N L+G I
Sbjct: 631 -NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHI 689

Query: 723 PSEI-GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLA 781
           P E+   +  I +LNLS N  SG IP+SF N+    S+DLS N L G+IP  L  LS L 
Sbjct: 690 PDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLK 749

Query: 782 IFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEE 837
              ++ NNL G VP  G F N + S+  GN  LCG        S+ P  P T  ++
Sbjct: 750 HLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--------SKKPLKPCTIKQK 797

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  259 bits (661), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 252/847 (29%), Positives = 386/847 (45%), Gaps = 93/847 (10%)

Query: 7   APKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVM 66
           +P  C D +R  LLE +      +     +     W  N+++DCC W  + CN  +G+V+
Sbjct: 30  SPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPW--NKSTDCCLWNGVTCNDKSGQVI 87

Query: 67  ELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQ 126
            L + +          + +   N SLF   Q L  LDL++    G    +  ++  +L  
Sbjct: 88  SLDIPNTFL-------NNYLKTNSSLF-KLQYLRHLDLTNCNLYG----EIPSSLGNLSH 135

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
           L ++N+ +N F   +   + +L  L  L L  N  +     + G  NL  L  L+L  NR
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLG--NLSRLVNLELFSNR 193

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA 246
           + G  I   I DLK L  L++  N   G +P  L NL+ L  L L+ N+L G +P S I 
Sbjct: 194 LVGK-IPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPAS-IG 251

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRH 306
           NL  L  +S  +N    + P+S  AN ++L +F LS                        
Sbjct: 252 NLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVLSS----------------------- 287

Query: 307 CNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN 366
            N + T P  +   ++  Y D+S N+    FP  LL     LE ++L  N  TG ++  N
Sbjct: 288 NNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI-PSLESIYLQENQFTGPIEFAN 346

Query: 367 --SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLD 424
             S   L  L++  N   G +PE+   +L  L  LD+S N+F G+IPP++  +  LL LD
Sbjct: 347 TSSSTKLQDLILGRNRLHGPIPESISRLL-NLEELDISHNNFTGAIPPTISKLVNLLHLD 405

Query: 425 LSSNNFSRDLPKHFLTSCV-SLEFMNLSHNYFDGQIFPKYMNLAKLVF-LFLNDNQFTGR 482
           LS NN   ++P     +C+  L  M LSHN F    F        L+  L LN N F G 
Sbjct: 406 LSKNNLEGEVP-----ACLWRLNTMVLSHNSFSS--FENTSQEEALIEELDLNSNSFQGP 458

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS-NLDVLLMSRNSFEGDVSVQLSNLEVA 541
           +   +   SSL  LD+SNN+ SG +P  I  FS ++  L +  N+F G +    S     
Sbjct: 459 IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518

Query: 542 RILDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG 600
             LD+S N+L G    S  N  +L  +   +N +    P+ L     L  L+LR N+F G
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

Query: 601 NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP----SCFTN 656
            + H             R  ++           + L I+DIS+N  +G +P    S + +
Sbjct: 579 PLYH-------------RHASIG---------FQSLRIIDISHNNFSGTLPPYYFSNWKD 616

Query: 657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN 716
           ++   E+ + Y +              S   E++ + K    S++  + +    +D S N
Sbjct: 617 MTTLTEEMDQYMTEFW-------RYADSYYHEMEMVNKGVDMSFE-RIRRDFRAIDFSGN 668

Query: 717 ELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE 776
           ++ G+IP  +GYL E+  LNLS N  +  IPR  +NL   E++D+S NKL+GQIP +L  
Sbjct: 669 KINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAA 728

Query: 777 LSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAE 836
           LSFL+  N S+N L G VP   QF     S++  NP L G  +   C       P +   
Sbjct: 729 LSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLP 786

Query: 837 EDESAID 843
           ED S  +
Sbjct: 787 EDLSEAE 793

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  249 bits (637), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 252/860 (29%), Positives = 388/860 (45%), Gaps = 86/860 (10%)

Query: 19  LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATT-GRVMELSLDSAIQVD 77
           LLE+K   KS+      D  L  W ++   + C+W  + C+ T   RV+ L+L       
Sbjct: 30  LLEVK---KSLVTNPQEDDPLRQW-NSDNINYCSWTGVTCDNTGLFRVIALNLTGL---- 81

Query: 78  SDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSF 137
                 G        F  F  L  LDLS N   G       N    L  L+ L +  N  
Sbjct: 82  ------GLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSN----LTSLESLFLFSNQL 131

Query: 138 NESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGIC 197
              +   L SL ++ SL +  N          G  NL NL++L L+  R+TG +  Q + 
Sbjct: 132 TGEIPSQLGSLVNIRSLRIGDNELVGDIPETLG--NLVNLQMLALASCRLTGPIPSQ-LG 188

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
            L  +  L + +N  +G +P  L N + L V   + N L+G +P + +  L +LE L+L 
Sbjct: 189 RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIP-AELGRLENLEILNLA 247

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK-----FQLKVLNLRHCNISGT 312
           +N      P S L   S+L+   L   Q++      +PK       L+ L+L   N++G 
Sbjct: 248 NNSLTGEIP-SQLGEMSQLQYLSLMANQLQG----LIPKSLADLGNLQTLDLSANNLTGE 302

Query: 313 IPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK-RNL 371
           IP           + L++N+L  + P  +  NNT LE + L    L+G + +  SK ++L
Sbjct: 303 IPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSL 362

Query: 372 PHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFS 431
             L +SNNS  G +PE     L EL  L +  N+ EG++ PS+  +  L +L L  NN  
Sbjct: 363 KQLDLSNNSLAGSIPEAL-FELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLE 421

Query: 432 RDLPKHF-----------------------LTSCVSLEFMNLSHNYFDGQIFPKYMNLAK 468
             LPK                         + +C SL+ +++  N+F+G+I P    L +
Sbjct: 422 GKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKE 481

Query: 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528
           L  L L  N+  G L   L N   L +LD+++N LSG +P   G    L+ L++  NS +
Sbjct: 482 LNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQ 541

Query: 529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQL 588
           G++   L +L     +++S N+L G +      SS       NN     IP  L  S  L
Sbjct: 542 GNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNL 601

Query: 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648
             L L  N+ +G I   + +   L  L +  N L G IP  L   +KL  +D++ N L+G
Sbjct: 602 DRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSG 661

Query: 649 PIPSCFTNISLWME------------KGNYYNSTLSLALPAEDNRESSQ---------RV 687
           PIP     +S   E                +N T  L L  + N  +            +
Sbjct: 662 PIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL 721

Query: 688 EVKFMAKNRYESYKGDVLKYMTG---LDLSSNELTGDIPSEIGYLGEIH-ALNLSNNFLS 743
            V  + KN++       +  ++    L LS N LTG+IP EIG L ++  AL+LS N  +
Sbjct: 722 NVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFT 781

Query: 744 GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANF 803
           G IP +   L   E++DLS+N+L G++P  +G++  L   NVS+NNL G +  K QF+ +
Sbjct: 782 GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRW 839

Query: 804 DESNYRGNPYLCG-PAVRKN 822
              ++ GN  LCG P  R N
Sbjct: 840 PADSFLGNTGLCGSPLSRCN 859

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  240 bits (612), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 220/676 (32%), Positives = 332/676 (49%), Gaps = 41/676 (6%)

Query: 172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
            +LR +  +DL+G  ++G+L    IC L  L +LN++ N   G +PQ LS    L VLDL
Sbjct: 64  THLRTVTSVDLNGMNLSGTL-SPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDL 122

Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENF 291
            +N+  G +P+ +   +T L+ L L +N+   S P  +  N S L+   +    +     
Sbjct: 123 CTNRFHGVIPIQLTMIIT-LKKLYLCENYLFGSIPRQI-GNLSSLQELVIYSNNLTGVIP 180

Query: 292 PWLPKF-QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWL--LQNNTKL 348
           P + K  QL+++       SG IP  +      + + L++N L  + P  L  LQN T L
Sbjct: 181 PSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDL 240

Query: 349 EIMFLFNNFLTGNLQLPNSKRNLPHL---VISNNSFIGKLPENFGLILPELVYLDMSQNS 405
               L+ N L+G  ++P S  N+  L    +  N F G +P   G  L ++  L +  N 
Sbjct: 241 ---ILWQNRLSG--EIPPSVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQ 294

Query: 406 FEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN 465
             G IP  +G +     +D S N  +  +PK F    ++L+ ++L  N   G I  +   
Sbjct: 295 LTGEIPREIGNLIDAAEIDFSENQLTGFIPKEF-GHILNLKLLHLFENILLGPIPRELGE 353

Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
           L  L  L L+ N+  G +   L     L  L + +N L G++P  IG +SN  VL MS N
Sbjct: 354 LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413

Query: 526 SFEGDVSVQLSNLEVARILDISENKLYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNALL 583
           S  G +       +   +L +  NKL G  P +  +   SL  L   +N L+G++P  L 
Sbjct: 414 SLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT-CKSLTKLMLGDNQLTGSLPIELF 472

Query: 584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643
               LT L+L  N  SGNI+  + +  NL  L L  NN  G IP  + +L K+   +IS 
Sbjct: 473 NLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISS 532

Query: 644 NTLNGPIP----SCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRV--EVKFMAKNRY 697
           N L G IP    SC T   L +  GN ++  ++        +E  Q V  E+  ++ NR 
Sbjct: 533 NQLTGHIPKELGSCVTIQRLDLS-GNKFSGYIA--------QELGQLVYLEILRLSDNRL 583

Query: 698 ESYK----GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIH-ALNLSNNFLSGSIPRSFSN 752
                   GD+ + M  L L  N L+ +IP E+G L  +  +LN+S+N LSG+IP S  N
Sbjct: 584 TGEIPHSFGDLTRLME-LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGN 642

Query: 753 LKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNP 812
           L+M E + L+ NKL+G+IP  +G L  L I N+S NNL GTVP+   F   D SN+ GN 
Sbjct: 643 LQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNH 702

Query: 813 YLCGPAVRKNCSSELP 828
            LC  + R +C   +P
Sbjct: 703 GLCN-SQRSHCQPLVP 717

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  230 bits (586), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 216/727 (29%), Positives = 345/727 (47%), Gaps = 68/727 (9%)

Query: 145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
           L SL +L SL L  N  +       G  NL NL++L L+  R+TG LI      L  L  
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIPETFG--NLVNLQMLALASCRLTG-LIPSRFGRLVQLQT 196

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
           L + +NE +G +P  + N T L +   + N+L+G+LP + +  L +L+ L+L DN F   
Sbjct: 197 LILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLP-AELNRLKNLQTLNLGDNSFSGE 255

Query: 265 FPLSVLANHSRLEVFQLSRLQVETENFPWLPK-----FQLKVLNLRHCNISGTIPRFLQY 319
            P S L +   ++   L   Q++      +PK       L+ L+L   N++G I      
Sbjct: 256 IP-SQLGDLVSIQYLNLIGNQLQG----LIPKRLTELANLQTLDLSSNNLTGVIHEEFWR 310

Query: 320 QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK-RNLPHLVISN 378
                ++ L+ N L  + P  +  NNT L+ +FL    L+G +    S  ++L  L +SN
Sbjct: 311 MNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSN 370

Query: 379 NSFIGKLPEN-FGLILPELVYLD----------------------MSQNSFEGSIPPSMG 415
           N+  G++P++ F L+    +YL+                      +  N+ EG +P  +G
Sbjct: 371 NTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG 430

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLN 475
           ++ +L  + L  N FS ++P   + +C  L+ ++   N   G+I      L  L  L L 
Sbjct: 431 FLGKLEIMYLYENRFSGEMPVE-IGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLR 489

Query: 476 DNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535
           +N+  G +   L N   + V+D+++N LSG +P   G  + L++ ++  NS +G++   L
Sbjct: 490 ENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSL 549

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
            NL+    ++ S NK  G +      SS        N   G IP  L +S+ L  L L  
Sbjct: 550 INLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGK 609

Query: 596 NEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT 655
           N+F+G I     + S L  L +  N+L G IP  L   +KL  +D++ N L+G IP+   
Sbjct: 610 NQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG 669

Query: 656 NISLWMEKGNYYNSTLSLALPAE--------------DNRESSQRVEVKFM----AKNRY 697
            + L  E     N  +  +LP E              ++   S   E+  +    A N  
Sbjct: 670 KLPLLGELKLSSNKFVG-SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLE 728

Query: 698 ESYKGDVLKYMTG-------LDLSSNELTGDIPSEIGYLGEIH-ALNLSNNFLSGSIPRS 749
           E+     L    G       L LS N LTG+IP EIG L ++  AL+LS N  +G IP +
Sbjct: 729 ENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPST 788

Query: 750 FSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYR 809
            S L   ES+DLS+N+L G++P ++G++  L   N+SYNNL G +  K QF+ +    + 
Sbjct: 789 ISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFV 846

Query: 810 GNPYLCG 816
           GN  LCG
Sbjct: 847 GNAGLCG 853

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  226 bits (577), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 220/750 (29%), Positives = 346/750 (46%), Gaps = 76/750 (10%)

Query: 92  LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSL 151
           L     +L  LDLSDN F G      +    SL  L  L++  NS +  + P +  L++L
Sbjct: 132 LLSELPQLLYLDLSDNHFSGSLPPSFF---ISLPALSSLDVSNNSLSGEIPPEIGKLSNL 188

Query: 152 TSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENE 211
           ++L++  NSFS       G ++L  L+          G L  + I  LK+L +L+++ N 
Sbjct: 189 SNLYMGLNSFSGQIPSEIGNISL--LKNFAAPSCFFNGPLPKE-ISKLKHLAKLDLSYNP 245

Query: 212 FDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLA 271
               +P+    L  L +L+L S +L G +P   + N  SL+ L L  N      PL +  
Sbjct: 246 LKCSIPKSFGELHNLSILNLVSAELIGLIP-PELGNCKSLKSLMLSFNSLSGPLPLEL-- 302

Query: 272 NHSRLEVFQLSRLQVETENFPWLPKFQ-LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330
           +   L  F   R Q+      W+ K++ L  L L +   SG IP  ++     +++ L+ 
Sbjct: 303 SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLAS 362

Query: 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-LPNSKRNLPHLVISNNSFIGKLPENF 389
           N L  + P  L  + + LE + L  N L+G ++ + +   +L  L+++NN   G +PE+ 
Sbjct: 363 NLLSGSIPRELCGSGS-LEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDL 421

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449
              LP L+ LD+  N+F G IP S+     L+    S N     LP   + +  SL+ + 
Sbjct: 422 -WKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAE-IGNAASLKRLV 478

Query: 450 LSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPR 509
           LS N   G+I  +   L  L  L LN N F G++ V L + +SL  LD+ +N L GQ+P 
Sbjct: 479 LSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPD 538

Query: 510 WIGKFSNLDVLLMSRNSFEGDVSVQ------------LSNLEVARILDISENKLYGPL-E 556
            I   + L  L++S N+  G +  +            LS L+   I D+S N+L GP+ E
Sbjct: 539 KITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPE 598

Query: 557 FSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALL 616
                  L  +   NN LSG IP +L + + LT LDL  N  +G+I   +     L+ L 
Sbjct: 599 ELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLN 658

Query: 617 LRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALP 676
           L  N L G+IPE    L  L  ++++ N L+GP+P+   N                    
Sbjct: 659 LANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGN-------------------- 698

Query: 677 AEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALN 736
                                       LK +T +DLS N L+G++ SE+  + ++  L 
Sbjct: 699 ----------------------------LKELTHMDLSFNNLSGELSSELSTMEKLVGLY 730

Query: 737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796
           +  N  +G IP    NL   E +D+S N L+G+IP ++  L  L   N++ NNL G VP+
Sbjct: 731 IEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Query: 797 KGQFANFDESNYRGNPYLCGPAVRKNCSSE 826
            G   +  ++   GN  LCG  V  +C  E
Sbjct: 791 DGVCQDPSKALLSGNKELCGRVVGSDCKIE 820

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 230/718 (32%), Positives = 328/718 (45%), Gaps = 103/718 (14%)

Query: 170 GLVNLRNLEV----LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTY 225
           G  N R  E+    L LSG       I   I  L+ L +L++  N F+G +P  L+  T 
Sbjct: 64  GCTNHRVTEIRLPRLQLSGR------ISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTR 117

Query: 226 LRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ 285
           L  + L  N LSG LP   + NLTSLE  ++  N      P+                  
Sbjct: 118 LLSVFLQYNSLSGKLP-PAMRNLTSLEVFNVAGNRLSGEIPVG----------------- 159

Query: 286 VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNN 345
                   LP   L+ L++     SG IP  L      + ++LS N L    P  L  N 
Sbjct: 160 --------LPS-SLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASL-GNL 209

Query: 346 TKLEIMFLFNNFLTGNLQLPNSKRN---LPHLVISNNSFIGKLPENFGLILPELVYLDMS 402
             L+ ++L  N L G L  P++  N   L HL  S N   G +P  +G  LP+L  L +S
Sbjct: 210 QSLQYLWLDFNLLQGTL--PSAISNCSSLVHLSASENEIGGVIPAAYG-ALPKLEVLSLS 266

Query: 403 QNSFEGSIPPSM-----------GY---------------MERLLFLDLSSNNFSRDLPK 436
            N+F G++P S+           G+                  L  LDL  N  S   P 
Sbjct: 267 NNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFP- 325

Query: 437 HFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL 496
            +LT+ +SL+ +++S N F G+I P   NL +L  L L +N  TG + V +    SL VL
Sbjct: 326 LWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVL 385

Query: 497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--P 554
           D   N L GQ+P ++G    L VL + RNSF G V   + NL+    L++ EN L G  P
Sbjct: 386 DFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFP 445

Query: 555 LE----------------FS-------SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL 591
           +E                FS       SN S+L +L    N  SG IP ++    +LT L
Sbjct: 446 VELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTAL 505

Query: 592 DLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP 651
           DL     SG +   ++   N++ + L+GNN  G +PE    L  L  V++S N+ +G IP
Sbjct: 506 DLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIP 565

Query: 652 SCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESY-KGDV--LKYM 708
             F      +   +  ++ +S ++P E    S+  +EV  +  NR   +   D+  L  +
Sbjct: 566 QTF-GFLRLLVSLSLSDNHISGSIPPEIGNCSA--LEVLELRSNRLMGHIPADLSRLPRL 622

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
             LDL  N L+G+IP EI     +++L+L +N LSG IP SFS L     MDLS N L G
Sbjct: 623 KVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTG 682

Query: 769 QIPPELGELSF-LAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSS 825
           +IP  L  +S  L  FNVS NNL G +P        + S + GN  LCG  + + C S
Sbjct: 683 EIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCES 740

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  223 bits (569), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 215/714 (30%), Positives = 332/714 (46%), Gaps = 89/714 (12%)

Query: 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG- 238
           LDL  + +TG+L +  +  L NL  L +  N F         +  YL+VLDLSSN +S  
Sbjct: 82  LDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFS-SGGDSSGSDCYLQVLDLSSNSISDY 140

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQ 298
           ++   V +  ++L  +++ +N                   F  S LQ             
Sbjct: 141 SMVDYVFSKCSNLVSVNISNNKLVGKLG------------FAPSSLQ------------S 176

Query: 299 LKVLNLRHCNISGTIPRFL--QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
           L  ++L +  +S  IP      +    +Y+DL+ NNL   F          L    L  N
Sbjct: 177 LTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQN 236

Query: 357 FLTGN---LQLPNSKRNLPHLVISNNSFIGKLP--ENFGLILPELVYLDMSQNSFEGSIP 411
            L+G+   + LPN K  L  L IS N+  GK+P  E +G     L  L ++ N   G IP
Sbjct: 237 NLSGDKFPITLPNCKF-LETLNISRNNLAGKIPNGEYWG-SFQNLKQLSLAHNRLSGEIP 294

Query: 412 PSMGYM-ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN-LAKL 469
           P +  + + L+ LDLS N FS +LP  F T+CV L+ +NL +NY  G      ++ +  +
Sbjct: 295 PELSLLCKTLVILDLSGNTFSGELPSQF-TACVWLQNLNLGNNYLSGDFLNTVVSKITGI 353

Query: 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSN---LDVLLMSRNS 526
            +L++  N  +G + + L N S+L VLD+S+N  +G +P       +   L+ +L++ N 
Sbjct: 354 TYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNY 413

Query: 527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH-SSLRYLFPHNNSLSGTIPNAL-LQ 584
             G V ++L   +  + +D+S N+L GP+        +L  L    N+L+GTIP  + ++
Sbjct: 414 LSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVK 473

Query: 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
              L TL L +N  +G+I   I+  +N+  + L  N L G IP  + +L KLAI+ +  N
Sbjct: 474 GGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNN 533

Query: 645 TLNGPIPSCFTNIS--LWME------KGNY---YNSTLSLALPAE--------------- 678
           +L+G +P    N    +W++       G+      S   L +P                 
Sbjct: 534 SLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGT 593

Query: 679 DNRESSQRVEVKFMAKNRYES------------YKGDVL------KYMTGLDLSSNELTG 720
           D R +   VE + +   R E             Y G  +        M   D+S N ++G
Sbjct: 594 DCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSG 653

Query: 721 DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL 780
            IP   G +G +  LNL +N ++G+IP SF  LK    +DLS+N L G +P  LG LSFL
Sbjct: 654 FIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFL 713

Query: 781 AIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATS 834
           +  +VS NNL+G +P  GQ   F  S Y  N  LCG  +R  C S  P  P TS
Sbjct: 714 SDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPLRP-CGSA-PRRPITS 765

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 228/789 (28%), Positives = 349/789 (44%), Gaps = 88/789 (11%)

Query: 39  LVSWVD----NRTSDCCTWERIKCNATTGRVMELSL-DSAIQVDSDDVNDGFPIINMSLF 93
           L SWV     N +  C +W  + CN+  G + EL+L ++ I+    D    FP I++S  
Sbjct: 50  LSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGIEGTFQD----FPFISLS-- 102

Query: 94  VPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTS 153
                L  +DLS N   G    +  N    L +L   ++  N     + P L +L +LT 
Sbjct: 103 ----NLAYVDLSMNLLSGTIPPQFGN----LSKLIYFDLSTNHLTGEISPSLGNLKNLTV 154

Query: 154 LFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD 213
           L+L  N  +       G  N+ ++  L LS N++TGS I   + +LKNL+ L + EN   
Sbjct: 155 LYLHQNYLTSVIPSELG--NMESMTDLALSQNKLTGS-IPSSLGNLKNLMVLYLYENYLT 211

Query: 214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH 273
           G++P  L N+  +  L LS NKL+G++P S + NL +L  L L++N+     P  +  N 
Sbjct: 212 GVIPPELGNMESMTDLALSQNKLTGSIP-STLGNLKNLMVLYLYENYLTGVIPPEI-GNM 269

Query: 274 SRLEVFQLSRLQVETENFPWLPKFQ-LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
             +    LS+ ++       L   + L +L+L    ++G IP  L        ++LS+N 
Sbjct: 270 ESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNK 329

Query: 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV---ISNNSFIGKLPENF 389
           L  + P+ L  N   L I++L+ N+LTG   +P    N+  ++   ++NN   G +P +F
Sbjct: 330 LTGSIPSSL-GNLKNLTILYLYENYLTG--VIPPELGNMESMIDLQLNNNKLTGSIPSSF 386

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449
           G  L  L YL +  N   G IP  +G ME ++ LDLS N  +  +P  F  +   LE + 
Sbjct: 387 G-NLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSF-GNFTKLESLY 444

Query: 450 LSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPR 509
           L  N+  G I P   N + L  L L+ N FTG     +     L  + +  N L G +P+
Sbjct: 445 LRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPK 504

Query: 510 WIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSN---HSSLRY 566
            +    +L       N F GD+            +D S NK +G  E SSN      L  
Sbjct: 505 SLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHG--EISSNWEKSPKLGA 562

Query: 567 LFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI 626
           L   NN+++G IP  +   +QL  LDL  N   G +   I   +NL  L L GN L G +
Sbjct: 563 LIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV 622

Query: 627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQR 686
           P  L  L  L  +D+S N  +  IP  F                                
Sbjct: 623 PAGLSFLTNLESLDLSSNNFSSEIPQTF-------------------------------- 650

Query: 687 VEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSI 746
                           D    +  ++LS N+  G IP  +  L ++  L+LS+N L G I
Sbjct: 651 ----------------DSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEI 693

Query: 747 PRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES 806
           P   S+L+  + +DLS+N L+G IP     +  L   ++S N L G +P+   F      
Sbjct: 694 PSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATAD 753

Query: 807 NYRGNPYLC 815
               N  LC
Sbjct: 754 ALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 182/553 (32%), Positives = 279/553 (50%), Gaps = 28/553 (5%)

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L+ L+L    ISG IP  +   Y+ R+++LS+N    +FP  L      L ++ L+NN L
Sbjct: 95  LQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNL 154

Query: 359 TGNLQLPNSKRNLP---HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415
           TG+L  P S  NL    HL +  N F GK+P  +G   P L YL +S N   G IPP +G
Sbjct: 155 TGDL--PVSLTNLTQLRHLHLGGNYFSGKIPATYG-TWPVLEYLAVSGNELTGKIPPEIG 211

Query: 416 YMERLLFLDLSS-NNFSRDLPKHF--LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
            +  L  L +   N F   LP     L+  V  +  N       G+I P+   L KL  L
Sbjct: 212 NLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCG---LTGEIPPEIGKLQKLDTL 268

Query: 473 FLNDNQFTGRL--EVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD 530
           FL  N FTG +  E+GL+  SSL  +D+SNNM +G++P    +  NL +L + RN   G 
Sbjct: 269 FLQVNAFTGTITQELGLI--SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGA 326

Query: 531 VSVQLSNLEVARILDISENKLYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQL 588
           +   +  +    +L + EN   G  P +   N   L  L   +N L+GT+P  +   ++L
Sbjct: 327 IPEFIGEMPELEVLQLWENNFTGSIPQKLGEN-GRLVILDLSSNKLTGTLPPNMCSGNRL 385

Query: 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648
            TL    N   G+I   + +  +L  + +  N L G+IP+ L  L KL+ V++  N L G
Sbjct: 386 MTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTG 445

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYE-SYKGDV--L 705
            +P     +S  + + +  N+ LS +LPA     S   V+   +  N++  S   ++  L
Sbjct: 446 ELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSG--VQKLLLDGNKFSGSIPPEIGRL 503

Query: 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK 765
           + ++ LD S N  +G I  EI     +  ++LS N LSG IP   + +K+   ++LS N 
Sbjct: 504 QQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNH 563

Query: 766 LNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAV----RK 821
           L G IP  +  +  L   + SYNNLSG VP+ GQF+ F+ +++ GN +LCGP +    + 
Sbjct: 564 LVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGPCGKG 623

Query: 822 NCSSELPPTPATS 834
              S + P  AT+
Sbjct: 624 THQSHVKPLSATT 636

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	844
358345693	1011	Receptor-like protein kinase [Medicago t	0.945	0.789	0.433	0.0
357468861	1016	Receptor-like protein kinase [Medicago t	0.945	0.785	0.433	0.0
12324907	910	putative disease resistance protein; 468	0.973	0.903	0.424	1e-180
358345471	933	Receptor kinase [Medicago truncatula] gi	0.940	0.851	0.450	1e-178
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.991	0.815	0.421	1e-178
15221162	965	receptor like protein 15 [Arabidopsis th	0.975	0.852	0.407	1e-175
359482731	918	PREDICTED: probable LRR receptor-like se	0.969	0.891	0.448	1e-175
297842171	966	leucine-rich repeat family protein [Arab	0.978	0.855	0.406	1e-175
359482757	1027	PREDICTED: LRR receptor-like serine/thre	0.990	0.814	0.414	1e-173
334183409	932	receptor like protein 9 [Arabidopsis tha	0.963	0.872	0.419	1e-168

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/935 (43%), Positives = 553/935 (59%), Gaps = 137/935 (14%)

Query: 11  CLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKC-NATTGRVMELS 69
           CL+ ERI LLEIK +  S +   Y    L SWVD+R S+CC+W  +KC N ++G ++ELS
Sbjct: 27  CLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRDSNCCSWNNVKCSNISSGHIIELS 84

Query: 70  LDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKI 129
           +   +     D+      +N+SLF PF+EL +LDLS N F GW  N+ +     LK+L+ 
Sbjct: 85  IRKLLFDIPFDMK-----LNVSLFRPFKELRLLDLSYNSFLGWIGNEGF---PRLKRLET 136

Query: 130 LNIGYNSFNESLVPLLTSLTSLTSLFLQGNSF----SEGFKHNK---------------- 169
           L++  N  N S++P L  LT+LT+L L  NS     ++GF  +K                
Sbjct: 137 LDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFSRSKELEVLDLSGNRLNCNI 196

Query: 170 -----GLVNLRNL----------------------EVLDLSGNRITGSL----------- 191
                G  +LR+L                      E+LDL GN+ TGSL           
Sbjct: 197 ITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNL 256

Query: 192 --------IMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS 243
                    M G+C+ K+LVEL+I++N F   LP CLSNLT LRVL+LS+N  SGN P S
Sbjct: 257 KMLSLNDNQMNGLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFP-S 315

Query: 244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR-----LQVETENFPWLPKFQ 298
            I+NLTSL YLS + N+ Q SF LS LANHS LEV  +S      + +ETE   W PKFQ
Sbjct: 316 FISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQ 375

Query: 299 LKVLNLRHCNI----SGTIPRFLQYQYDFRYIDLSDNNLVDTFPT-WLLQNNTKLEIMFL 353
           LK L +R+CN+       IP FL YQY+  Y+ LS NN+  + P+ WL+ N+        
Sbjct: 376 LKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND-------- 427

Query: 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS 413
                           ++ +L ISNN+  G LP++ G+ LP + YL+ S NSFEG+IP S
Sbjct: 428 ----------------DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSS 471

Query: 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473
           +G M++L  LD S N+FS +LPK   T C +L+++ LS+N+  G I P++ N   +  LF
Sbjct: 472 IGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLF 530

Query: 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV 533
           LN+N F+G LE  L N + L  L +SNN  SG +P  IG FSN+  LLMS+N  EG++ +
Sbjct: 531 LNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPI 590

Query: 534 QLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593
           ++S++   +ILD+S+NKL G +   S  + LR+L+   N LSG+IP  L +  QL  LDL
Sbjct: 591 EISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDL 650

Query: 594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC 653
           R+N+FSG I + +++ S LR LLL GNN +G IP  LC L+K+ I+D+S N LN  IPSC
Sbjct: 651 RENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSC 710

Query: 654 FTNISLWMEK--------------------GNYYNSTLSLALPAEDNR--ESSQRVEVKF 691
           F N+   M +                      +++S+LS+ LP E ++  E    +EV+F
Sbjct: 711 FRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEF 770

Query: 692 MAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFS 751
             K+    YKG VL+ MTGLDLS N+LTG IPS+IG L +I ALNLS+N LSG IP +FS
Sbjct: 771 RTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFS 830

Query: 752 NLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGN 811
           NL   ES+DLSYN L+G+IP EL +L+FL+ FNVSYNNLSGT P+ GQFANFDE NYRGN
Sbjct: 831 NLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGN 890

Query: 812 PYLCGPAVRKNCSSELPPTPATS--AEEDESAIDM 844
           P LCGP + + C    PP  + S   EE+E+ +DM
Sbjct: 891 PSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDM 925

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/935 (43%), Positives = 553/935 (59%), Gaps = 137/935 (14%)

Query: 11  CLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKC-NATTGRVMELS 69
           CL+ ERI LLEIK +  S +   Y    L SWVD+R S+CC+W  +KC N ++G ++ELS
Sbjct: 27  CLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRDSNCCSWNNVKCSNISSGHIIELS 84

Query: 70  LDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKI 129
           +   +     D+      +N+SLF PF+EL +LDLS N F GW  N+ +     LK+L+ 
Sbjct: 85  IRKLLFDIPFDMK-----LNVSLFRPFKELRLLDLSYNSFLGWIGNEGF---PRLKRLET 136

Query: 130 LNIGYNSFNESLVPLLTSLTSLTSLFLQGNSF----SEGFKHNK---------------- 169
           L++  N  N S++P L  LT+LT+L L  NS     ++GF  +K                
Sbjct: 137 LDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFSRSKELEVLDLSGNRLNCNI 196

Query: 170 -----GLVNLRNL----------------------EVLDLSGNRITGSL----------- 191
                G  +LR+L                      E+LDL GN+ TGSL           
Sbjct: 197 ITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNL 256

Query: 192 --------IMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS 243
                    M G+C+ K+LVEL+I++N F   LP CLSNLT LRVL+LS+N  SGN P S
Sbjct: 257 KMLSLNDNQMNGLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFP-S 315

Query: 244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR-----LQVETENFPWLPKFQ 298
            I+NLTSL YLS + N+ Q SF LS LANHS LEV  +S      + +ETE   W PKFQ
Sbjct: 316 FISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQ 375

Query: 299 LKVLNLRHCNI----SGTIPRFLQYQYDFRYIDLSDNNLVDTFPT-WLLQNNTKLEIMFL 353
           LK L +R+CN+       IP FL YQY+  Y+ LS NN+  + P+ WL+ N+        
Sbjct: 376 LKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND-------- 427

Query: 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS 413
                           ++ +L ISNN+  G LP++ G+ LP + YL+ S NSFEG+IP S
Sbjct: 428 ----------------DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSS 471

Query: 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473
           +G M++L  LD S N+FS +LPK   T C +L+++ LS+N+  G I P++ N   +  LF
Sbjct: 472 IGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLF 530

Query: 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV 533
           LN+N F+G LE  L N + L  L +SNN  SG +P  IG FSN+  LLMS+N  EG++ +
Sbjct: 531 LNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPI 590

Query: 534 QLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593
           ++S++   +ILD+S+NKL G +   S  + LR+L+   N LSG+IP  L +  QL  LDL
Sbjct: 591 EISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDL 650

Query: 594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC 653
           R+N+FSG I + +++ S LR LLL GNN +G IP  LC L+K+ I+D+S N LN  IPSC
Sbjct: 651 RENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSC 710

Query: 654 FTNISLWMEK--------------------GNYYNSTLSLALPAEDNR--ESSQRVEVKF 691
           F N+   M +                      +++S+LS+ LP E ++  E    +EV+F
Sbjct: 711 FRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEF 770

Query: 692 MAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFS 751
             K+    YKG VL+ MTGLDLS N+LTG IPS+IG L +I ALNLS+N LSG IP +FS
Sbjct: 771 RTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFS 830

Query: 752 NLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGN 811
           NL   ES+DLSYN L+G+IP EL +L+FL+ FNVSYNNLSGT P+ GQFANFDE NYRGN
Sbjct: 831 NLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGN 890

Query: 812 PYLCGPAVRKNCSSELPPTPATS--AEEDESAIDM 844
           P LCGP + + C    PP  + S   EE+E+ +DM
Sbjct: 891 PSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDM 925

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 373/879 (42%), Positives = 542/879 (61%), Gaps = 57/879 (6%)

Query: 4   QMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTG 63
           Q+H  KSC+D E+I L E++  + S ++   ++++L +W ++ TSDCC W+ + CN  +G
Sbjct: 3   QLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTTSDCCRWKGVACNRVSG 59

Query: 64  RVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEG-WEENKAYNTSR 122
           RV E+S       D+  +N       +SL  PF+++  L+LS +R  G +++ + Y + R
Sbjct: 60  RVTEISFGGLSLKDNSLLN-------LSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLR 112

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
            L++L+IL++  N FN S+   L++ TSLT+LFL+ N+    F   K L +L NLE+LDL
Sbjct: 113 KLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPA-KELRDLTNLELLDL 171

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
           S NR  GS+ +QGIC+L N+ EL++++N+  G LP CL++LT LRVLDLSSNKL+G +P 
Sbjct: 172 SRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVP- 230

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL----SRLQVETENFPWLPKFQ 298
           S + +L SLEYLSLFDN F+ SF    LAN S L V +L    S LQV +E+  W PKFQ
Sbjct: 231 SSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQ 289

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L V+ LR CN+   +P FL +Q D R++DLSDNN+    P+WLL NNTKL+++ L NN  
Sbjct: 290 LSVIALRSCNME-KVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLF 348

Query: 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
           T + Q+P S  NL  L +S N F    PEN G I P L YL+ S+N+F+ ++P S+G M 
Sbjct: 349 T-SFQIPKSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMN 407

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
            + ++DLS N+F  +LP+ F+  C S+  + LSHN   G+IFP+  N   ++ LF+++N 
Sbjct: 408 GIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNL 467

Query: 479 FTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL 538
           FTG++  GL +  +L +LD+SNN L+G +P WIG+  +L  LL+S N  +GD+ + L N 
Sbjct: 468 FTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNK 527

Query: 539 EVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF 598
              ++LD+S N L G +    +  +   L   +N LSGTIP+ LL + ++  LDLR+N F
Sbjct: 528 SSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRF 585

Query: 599 SGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658
           SG I   IN   N+  LLLRGNN  G IP  LC L  + ++D+S N LNG IPSC +N S
Sbjct: 586 SGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS 644

Query: 659 LWMEK---------------------------------GNYYNSTLSLALPAEDNRESSQ 685
               K                                 G Y+ S L+L   + D + ++Q
Sbjct: 645 FGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ 704

Query: 686 RVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS 745
             +++F  K+RY++Y G  LK + G+DLS NEL+G+IP E G L E+ ALNLS+N LSG 
Sbjct: 705 -TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGV 763

Query: 746 IPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDE 805
           IP+S S+++  ES DLS+N+L G+IP +L EL+ L++F VS+NNLSG +P   QF  FD 
Sbjct: 764 IPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDA 823

Query: 806 SNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDESAIDM 844
            +Y GN  LCG    ++C++          E DES IDM
Sbjct: 824 ESYFGNRLLCGQPTNRSCNNNSYEEADNGVEADESIIDM 862

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 403/895 (45%), Positives = 527/895 (58%), Gaps = 101/895 (11%)

Query: 9   KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMEL 68
           + CL+ E++GLL++K F+ S S  +Y +  L SW D    DCC+WER+KCN TTG VM+L
Sbjct: 28  EGCLEKEKLGLLDLKTFLISNSTSKYNN--LTSW-DKSDVDCCSWERVKCNHTTGHVMDL 84

Query: 69  SLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLK 128
            L   + + ++       I N S F+PF  L  LDLS N F+GW E         ++   
Sbjct: 85  LL-GGVTIPTNTTY--LWIFNFSYFLPFNHLVHLDLSANYFDGWVE---------IEGNF 132

Query: 129 ILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT 188
           IL+  +N    +LV            F  G +      H    VN R      L+ N+I 
Sbjct: 133 ILDFFFNYHESNLV------------FRDGFTTLSHTTHQPLNVNRR------LTENKI- 173

Query: 189 GSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANL 248
              I+ G+C +KNL EL+++ N   G  PQCL NLT LRVLDLSSN   GN+P S I +L
Sbjct: 174 ---ILTGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIP-SFIISL 229

Query: 249 TSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS----RLQVETENFP-WLPKFQLKVLN 303
            SLEYLSLFD +F   F  S L NHS+LEVF LS     L VETE  P W P FQLKVL 
Sbjct: 230 KSLEYLSLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQ 289

Query: 304 LRHCNIS----GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT 359
           LR+C ++    GT P FL YQ++ + +DLS N L   FP+W+L+NNTKLE ++L NN  T
Sbjct: 290 LRNCFLNSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFT 349

Query: 360 GNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMER 419
           G L+LP  K  L  L ISNN   G+L E+ G I P L Y+++S+NSFEG +P S+G M+ 
Sbjct: 350 GTLELPTFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQT 409

Query: 420 LLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF 479
           +  LDLS+NNFS +L  H +++  SL  + LSHN F G + P   NL +L +L+LN+N F
Sbjct: 410 IRTLDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSF 468

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLE 539
           +G +E G+ N SSL+ LD+SNNMLSG++PRWIG+F+ L VL +S+N  +G++  +L NL 
Sbjct: 469 SGVIEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLI 528

Query: 540 VARILDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF 598
               LD+SEN L   L +   N   +++L+   N+L G IP A  Q ++LT+LDLRDN F
Sbjct: 529 SLSYLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNF 588

Query: 599 SGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658
            GNI   IN  S LR LLL GN L G IP  +C L  + I+D+S+N +N  IP C  NIS
Sbjct: 589 FGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNIS 648

Query: 659 ------------------------------------------LWMEKGN----YYNSTLS 672
                                                     +W   GN    +YNS+LS
Sbjct: 649 FKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNSSLS 708

Query: 673 LALP-AEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGE 731
           L  P A++   S + VE++F  K+ Y SYKG+ L  MTGLDLSSN L+G IP EIG L +
Sbjct: 709 LNHPIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRD 768

Query: 732 IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           I ALNLS+N  SGSIP +F NL   ES+DLSYN L+G +P  L  L  LAIFNVSYN  S
Sbjct: 769 IKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFS 828

Query: 792 GTVPNKGQFANFDESNYRGNPYLCGPAVRKNC--SSELPPTPATSAEEDESAIDM 844
           G VP   QFANFDE+NYRGN  LCG  +   C  +S  PP   T   + ++AIDM
Sbjct: 829 GRVPTTMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTT---QHQTAIDM 880

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 401/952 (42%), Positives = 556/952 (58%), Gaps = 115/952 (12%)

Query: 3   VQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATT 62
           VQ+   K C+  E++GLLE KAF+K   + ++AD +L SW+DN TS+CC WER+ CN TT
Sbjct: 18  VQICGCKGCIKEEKMGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTT 75

Query: 63  GRVMELSLDSAIQVDS---DDV----NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEEN 115
           GRV +L L+   +  +   DD     N  F ++N+SLF+PF+ELH L+LS N F+G+ EN
Sbjct: 76  GRVKKLFLNDITRQQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIEN 135

Query: 116 KAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG----NSFS--------- 162
           + +    SLK+L+IL+I  N F++S +  L ++TSL +L +       SFS         
Sbjct: 136 EGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSIRELASLRN 195

Query: 163 -----------EGFKHNKGLVNLRNLEVLDLS---------------------------- 183
                      E F+  +   +L NLE+LDLS                            
Sbjct: 196 LEVLDLSYNDLESFQLLQDFASLSNLELLDLSYNLFSGSIPSSIRLMSSINNLEVLDLSG 255

Query: 184 -----------------------GNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL 220
                                  GN + GSL  QG C L  L EL+++ N F G+LP CL
Sbjct: 256 NSFSGIVPSSIRLLSSLKSLSLAGNHLNGSLANQGFCQLNKLQELDLSYNLFQGILPPCL 315

Query: 221 SNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ 280
           +NLT LR+LDLS N  SGNL   ++ NLTSLEY+ L  N F+ SF  S  ANHS+L++ +
Sbjct: 316 NNLTSLRLLDLSVNLFSGNLSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQMVK 375

Query: 281 LS----RLQVETENFP--WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
           L     + +VETE +P  W+P FQLK L+L  C ++G +P FLQYQ+    +DLS NNL 
Sbjct: 376 LGMNNNKFEVETE-YPIGWVPLFQLKALSLDSCKLTGDLPSFLQYQFRLVGVDLSHNNLT 434

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPH-LVISNNSFIGKLPENFGLIL 393
            +FP WLL+NNT+L+ + L NN L G L LP  +    H L IS+N   G+L EN   ++
Sbjct: 435 GSFPNWLLENNTRLKSLVLRNNSLMGQL-LPLERNTRIHSLDISHNQLDGQLQENVAHMI 493

Query: 394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453
           P + YL++S N FEG +P S+  +  L +LDLS+NNFS ++PK  L +   L  + LS+N
Sbjct: 494 PNMKYLNLSDNGFEGILPSSIVELRALWYLDLSTNNFSGEVPKQLLAA-KDLGVLKLSNN 552

Query: 454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGK 513
            F G+IF +  NL +L  L+L +NQ TG L   +  +S L VLDVSNN +SG++P  IG 
Sbjct: 553 KFHGEIFSRDFNLIRLEVLYLGNNQLTGTLSNVISKSSWLGVLDVSNNYMSGEIPSQIGN 612

Query: 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNS 573
            + L  L++  NSF+G +  ++S L     LD+S+N L G L       SL++L    N 
Sbjct: 613 MTYLTTLVLGNNSFKGKLPPEISQLWGLEFLDVSQNALSGSLPCLKTMESLKHLHLQGNM 672

Query: 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE-DSNLRALLLRGNNLQGNIPEPLCH 632
            +G IP   L SS L TLD+RDN   G+I + I+     LR  LL GN L G IP  LCH
Sbjct: 673 FTGLIPRDFLNSSHLLTLDMRDNRLFGSIPNSISALLKQLRIFLLGGNLLSGFIPNHLCH 732

Query: 633 LRKLAIVDISYNTLNGPIPSCFTNISL------------WMEKGNYYNSTLSLALPAEDN 680
           L +++++D+S N+ +GPIP CF +I              ++E     +S L  A      
Sbjct: 733 LTEISLMDLSNNSFSGPIPKCFGHIRFGEMKKEDNVFGQFIEIRYGMDSHLVYAGYLVKY 792

Query: 681 RESSQRV-----EVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHAL 735
            E    V     EV+F+ KNR + Y+G +L++M+GLDLS N LTG+IP E+G L  I AL
Sbjct: 793 WEDLSSVYKGKDEVEFVTKNRRDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRAL 852

Query: 736 NLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVP 795
           NLS+N L+GSIP+SFS+L   ES+DLSYNKL G+IP EL EL+FLA+F+V+YNN+SG VP
Sbjct: 853 NLSHNQLNGSIPKSFSDLSQIESLDLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVP 912

Query: 796 N-KGQFANFDESNYRGNPYLCGPAVRKNC--SSELPPTPATSAEEDESAIDM 844
           N K QFA FDES+Y GNP+LCG  +++ C  S E P  P+ S E +    D+
Sbjct: 913 NAKAQFATFDESSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESETKWYDI 964

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/916 (40%), Positives = 543/916 (59%), Gaps = 93/916 (10%)

Query: 4   QMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTG 63
           Q+H  KSC+D E+I L E++  + S ++   ++++L +W ++ TSDCC W+ + CN  +G
Sbjct: 20  QLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTTSDCCRWKGVACNRVSG 76

Query: 64  RVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEG-WEENKAYNTSR 122
           RV E+S       D+  +N       +SL  PF+++  L+LS +R  G +++ + Y + R
Sbjct: 77  RVTEISFGGLSLKDNSLLN-------LSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLR 129

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGF--KHNKGLVNL------ 174
            L++L+IL++  N FN S+   L++ TSLT+LFL+ N+    F  K  + L NL      
Sbjct: 130 KLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLS 189

Query: 175 ----------------RNLEVLDLSGNRITGSLIMQG-------------ICDLKNLVEL 205
                           R L+ LDLSGN  +GS+ +QG             IC+L N+ EL
Sbjct: 190 RNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQEL 249

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           ++++N+  G LP CL++LT LRVLDLSSNKL+G +P S + +L SLEYLSLFDN F+ SF
Sbjct: 250 DLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVP-SSLGSLQSLEYLSLFDNDFEGSF 308

Query: 266 PLSVLANHSRLEVFQL----SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
               LAN S L V +L    S LQV +E+  W PKFQL V+ LR CN+   +P FL +Q 
Sbjct: 309 SFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLLHQK 366

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
           D R++DLSDNN+    P+WLL NNTKL+++ L NN  T + Q+P S  NL  L +S N F
Sbjct: 367 DLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLFLDVSANDF 425

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
               PEN G I P L YL+ S+N+F+ ++P S+G M  + ++DLS N+F  +LP+ F+  
Sbjct: 426 NHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNG 485

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN 501
           C S+  + LSHN   G+IFP+  N   ++ LF+++N FTG++  GL +  +L +LD+SNN
Sbjct: 486 CYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNN 545

Query: 502 MLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH 561
            L+G +P WIG+  +L  LL+S N  +GD+ + L N    ++LD+S N L G +    + 
Sbjct: 546 NLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDS 605

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
            +   L   +N LSGTIP+ LL + ++  LDLR+N FSG I   IN   N+  LLLRGNN
Sbjct: 606 RNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQ-NISILLLRGNN 662

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK------------------ 663
             G IP  LC L  + ++D+S N LNG IPSC +N S    K                  
Sbjct: 663 FTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVF 722

Query: 664 ---------------GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
                          G Y+ S L+L   + D + ++Q  +++F  K+RY++Y G  LK +
Sbjct: 723 NGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLL 781

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
            G+DLS NEL+G+IP E G L E+ ALNLS+N LSG IP+S S+++  ES DLS+N+L G
Sbjct: 782 FGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQG 841

Query: 769 QIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELP 828
           +IP +L EL+ L++F VS+NNLSG +P   QF  FD  +Y GN  LCG    ++C++   
Sbjct: 842 RIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSY 901

Query: 829 PTPATSAEEDESAIDM 844
                  E DES IDM
Sbjct: 902 EEADNGVEADESIIDM 917

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482731|ref|XP_003632819.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 388/866 (44%), Positives = 536/866 (61%), Gaps = 48/866 (5%)

Query: 17  IGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQV 76
           +GLLE KAF++   + ++AD +L SW+DN TS+CC WER+ CN TTGRV +L L+   + 
Sbjct: 1   MGLLEFKAFLEL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITRQ 58

Query: 77  DS---DDVND----GFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKI 129
            +   DD  D     F ++N+SLF+PF+ELH L+LS N F+G+ EN+ +    SLK+L+I
Sbjct: 59  QNFLEDDWYDYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKGLSSLKKLEI 118

Query: 130 LNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG 189
           L+I  N F++S +  L ++TSL +L +        F   + L +LRNLE LDLS N +  
Sbjct: 119 LDISGNEFDKSALKSLGTITSLKTLAICSMGLYGSFSI-RELASLRNLEGLDLSYNDLES 177

Query: 190 SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLT 249
             ++QG C L  L EL+++ N F G+LP CL+N T LR+LDLS+N  SGNL   ++ NLT
Sbjct: 178 FQLLQGFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDLSANLFSGNLSSPLLPNLT 237

Query: 250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS----RLQVETENFP--WLPKFQLKVLN 303
           SLEY+ L  N F+ SF  S  ANHS+L+V  L     + +VETE +P  W+P FQLKVL+
Sbjct: 238 SLEYIDLSYNQFEGSFSFSSFANHSKLQVVILGSDNNKFEVETE-YPVGWVPLFQLKVLS 296

Query: 304 LRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363
           L  C ++G +P FLQYQ+    +DLS NNL  +FP WLL NNT+LE + L NN L G L 
Sbjct: 297 LSSCKLTGDLPGFLQYQFRLVRVDLSHNNLTGSFPNWLLANNTRLEFLVLRNNSLMGQLL 356

Query: 364 LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFL 423
                  +  L IS+N   G+L EN   ++P ++ L++S N FEG +P S+  M  L  L
Sbjct: 357 PLRPTTRISSLDISHNQLDGQLQENVAHMIPHIMSLNLSNNGFEGILPSSIAEMISLRVL 416

Query: 424 DLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRL 483
           DLS+NNFS ++PK  L +   LE + LS+N F G+IF +  NL  +  L L +NQFTG L
Sbjct: 417 DLSANNFSGEVPKQLLAT-KRLEILKLSNNKFHGEIFSRDFNLTWVEVLCLGNNQFTGTL 475

Query: 484 EVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARI 543
              +   S L VLDVSNN +SG++P  IG  ++L  L++  NSF+G +  ++S L+    
Sbjct: 476 SNVISKNSWLSVLDVSNNYMSGEIPSQIGNMTDLTTLVLGNNSFKGKLPPEISQLQGLEF 535

Query: 544 LDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603
           LD+S+N L G L    N  +L++L    N  +  IP   L SS L TLD+R+N   G+I 
Sbjct: 536 LDVSQNALSGSLPSLKNLLNLKHLHLQGNMFTRLIPRDFLNSSNLLTLDIRENRLFGSIP 595

Query: 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISL---- 659
           + I+    LR LLL GN L G IP  LCHL +++++D+S N+ +GPIP CF +I      
Sbjct: 596 NSISALLKLRILLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRFGEMK 655

Query: 660 ------------WMEK------GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYK 701
                       W E         Y       + P     +     EV+F+ KNR +SYK
Sbjct: 656 KEDNVFGQFIESWYEMNPHLVYAGYLVKHWGFSSPIYKETD-----EVEFVTKNRRDSYK 710

Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
           G +L++M+GLDLS N LTG+IP E+G L  IHALNLS+N L+GSIP+SFSNL   ES+DL
Sbjct: 711 GGILEFMSGLDLSCNNLTGEIPHELGMLSSIHALNLSHNQLNGSIPKSFSNLSQIESLDL 770

Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN-KGQFANFDESNYRGNPYLCGPAVR 820
           SYNKL G+IP EL EL+FL +F+V+YNN+SG VPN K QF  FDESNY GNP+LCG  ++
Sbjct: 771 SYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPNTKAQFGTFDESNYEGNPFLCGELLK 830

Query: 821 KNC--SSELPPTPATSAEEDESAIDM 844
           + C  S E P  P+ S + +    D+
Sbjct: 831 RKCNTSIESPCAPSQSFKSEAKWYDI 856

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 372/916 (40%), Positives = 542/916 (59%), Gaps = 90/916 (9%)

Query: 4   QMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTG 63
           Q+H  KSC+D ER  L E++ ++ S ++   +D++L +W ++ TSDCC W+ + CN  +G
Sbjct: 20  QLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPTWTNDTTSDCCRWKGVACNRVSG 79

Query: 64  RVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEG-WEENKAYNTSR 122
           RV E++       D+  +N       +SL  PF+++  L+LS +RF G +++ + Y + R
Sbjct: 80  RVTEIAFGGLSLKDNSLLN-------LSLLHPFEDVRSLNLSSSRFSGLFDDVEGYKSLR 132

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGF--KHNKGLVNL------ 174
            L++L+IL++  N FN S+   L++ TSLT+LFL+ N+    F  K  + L NL      
Sbjct: 133 RLRKLEILDLSSNKFNNSIFHFLSAATSLTTLFLRSNNMVGSFPAKELRDLTNLELLDLS 192

Query: 175 ----------------RNLEVLDLSGNRITGSLIMQG-------------ICDLKNLVEL 205
                           R L+ LDLSGN  +GS+ +QG             IC+LKN  EL
Sbjct: 193 RNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFSTNLQEWCIHGICELKNTQEL 252

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           ++++N+  G  P CL++LT LRVLDLSSN+L+G +P S + +L SLEYLSLFDN F+ SF
Sbjct: 253 DLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVP-STLGSLPSLEYLSLFDNDFEGSF 311

Query: 266 PLSVLANHSRLEVFQL----SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
               LAN S L V +L    S LQV +E+  W PKFQL V+ LR CN+   +P FL +Q 
Sbjct: 312 SFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLIHQK 369

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
           D R++DLS+N +    P+WLL NNTKL+++ L NNF T + Q+P S  +L  L  S N F
Sbjct: 370 DLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFT-SFQIPKSAHDLLFLDASANEF 428

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
               PEN G I P L Y+++ +N F+G++P S+G M+ L +LDLS N+F   LP+ F+  
Sbjct: 429 NHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPRSFVNG 488

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN 501
           C S+  + LSHN   G+IFP+  NL  L+ LF+++N FTG++  GL +  +L +LD+SNN
Sbjct: 489 CYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLELLDMSNN 548

Query: 502 MLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH 561
            L+G +P WIG+  +L  LL+S N  +G++   L N    ++LD+S N L G +    + 
Sbjct: 549 NLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGIPPHHDS 608

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
                L   +N+LSGTI + LL + ++  LDLR+N FSGNI   IN   N+  LLLRGN 
Sbjct: 609 RDGVVLLLQDNNLSGTIADTLLVNVEI--LDLRNNRFSGNIPEFINTQ-NISILLLRGNK 665

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK------------------ 663
           L G IP  LC L  + ++D+S N LNG IPSC +N S    K                  
Sbjct: 666 LTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNTSFGFGKECTSYDYDFGISFPSDVF 725

Query: 664 ---------------GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
                          G Y+ S L L   + D + ++Q  +++F  K+RY++Y G  LK +
Sbjct: 726 NGFSLHQDLSSNKNSGIYFKSLLMLDPFSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLL 784

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
            G+DLS NEL+G+IP E G L E+ ALNLS+N LSG IP+S S+++  ES DLS+N+L G
Sbjct: 785 FGIDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSLSSMEKMESFDLSFNRLQG 844

Query: 769 QIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELP 828
           +IP +L EL+ L++F VS+NNLSG +P   QF  FD  +Y GN  LCG    ++C++   
Sbjct: 845 RIPAQLTELTSLSVFKVSHNNLSGVIPEGRQFNTFDAESYLGNRLLCGQPTNRSCNNNSF 904

Query: 829 PTPATSAEEDESAIDM 844
                  E++ES IDM
Sbjct: 905 EEADDEVEDNESTIDM 920

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 395/954 (41%), Positives = 552/954 (57%), Gaps = 118/954 (12%)

Query: 3   VQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATT 62
           VQ+   K C++ E++GLLE KAF+K V+D ++ D +L SW+DN TS+CC WER+ CN TT
Sbjct: 18  VQICGCKGCIEEEKMGLLEFKAFLK-VND-EHTDFLLPSWIDNNTSECCNWERVICNPTT 75

Query: 63  GRVMELSLDSAIQVDS-------DDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEEN 115
           GRV +LSL+   Q  +          N  F ++N+S+F+ F+ELH L+LS N F+G+ EN
Sbjct: 76  GRVKKLSLNDIRQQQNWLEVSWYGYENVKFWLLNVSIFLHFEELHHLNLSGNSFDGFIEN 135

Query: 116 KAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGF---------- 165
           + +    SLK+L+IL+I  N F++S +  L+++TSL +L +     +  F          
Sbjct: 136 EGFKGLSSLKKLEILDISGNEFDKSALKSLSAITSLKTLAICSMGLAGSFPIRELASLRN 195

Query: 166 -----------------KHNKGLVNLRNLEVLDLSGNRITGSLIMQ-------------- 194
                            +  K L  L+ LE+L+L  N+   ++I Q              
Sbjct: 196 LEVLDLSYNDLESFQLVQGFKSLSKLKKLEILNLGDNQFNKTIIKQLSGLTSLKTLVVRY 255

Query: 195 ---------------------------GICDLKNLVELNINENEFDGLLPQCLSNLTYLR 227
                                      G C L  L EL+++ N F G+LP CL+N T LR
Sbjct: 256 NYIEGLFPSQDSMAPYQSKLHVLFSFVGFCQLNKLQELDLSYNLFQGILPPCLNNFTSLR 315

Query: 228 VLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR---- 283
           +LD+S+N  SGNL   ++ NLTSLEY+ L  N F+ SF  S  ANHS+L+V  L R    
Sbjct: 316 LLDISANLFSGNLSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQVVILGRDNNI 375

Query: 284 ----------LQVETENFP--WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN 331
                      +VETE +P  W+P FQLKVL+L  C ++G +P FLQYQ+    +DLS N
Sbjct: 376 FEEVGRDNNKFEVETE-YPVGWVPLFQLKVLSLSSCKLTGDLPGFLQYQFRLVGVDLSHN 434

Query: 332 NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQL--PNSKRNLPHLVISNNSFIGKLPENF 389
           NL  +FP WLL NNT+LE + L NN L G L    PN++ N   L IS+N   G+L EN 
Sbjct: 435 NLTGSFPNWLLANNTRLEFLVLRNNSLMGQLLPLGPNTRIN--SLDISHNQLDGQLQENV 492

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449
             ++P ++ L++S N FEG +P S+  +  L  LDL +NNFSR++PK  L +   LE + 
Sbjct: 493 AHMIPNIMSLNLSNNGFEGILPSSIAELRALSMLDLFTNNFSREVPKQLLAA-KDLEILK 551

Query: 450 LSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPR 509
           LS+N F G+IF +  NL  L  L+L +NQFTG L   +  +S L VLDVSNN +SG++P 
Sbjct: 552 LSNNKFHGEIFSRDFNLTWLKHLYLGNNQFTGTLSNVICRSSLLRVLDVSNNYMSGEIPS 611

Query: 510 WIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFP 569
           WIG  + L  L+M  N+F+G +  ++S L     LDIS+N L G L    +   L +L  
Sbjct: 612 WIGNMTGLGTLVMGNNNFKGKLPPEISQLSGMMFLDISQNALSGSLPSLKSMEYLEHLHL 671

Query: 570 HNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP 629
             N  +G IP   L SS L TLD+R+N   G+I   I+    LR LLL GN L G IP  
Sbjct: 672 QGNMFTGLIPRDFLNSSNLLTLDIRENRLFGSIPDSISALLRLRILLLGGNLLSGFIPNH 731

Query: 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISL------------WMEKGNYYNSTLSLALPA 677
           LCHL +++++D+S N+ +GPIP  F +I              ++E    +NS        
Sbjct: 732 LCHLTEISLMDLSNNSFSGPIPKFFGHIRFGEMKKEDNVFGQFIESEYGWNSLAYAGYLV 791

Query: 678 EDNRES----SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIH 733
           +D        +++ EV F+ KNR +SYKG +L++M+GLDLS N LTG+IP E+G L  I 
Sbjct: 792 KDLGSPILVYNEKDEVDFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSWIR 851

Query: 734 ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGT 793
           ALNLS+N L+GSIP+SFSNL   ES+DLSYNKL G+IP EL EL+FL +F+V+YNN+SG 
Sbjct: 852 ALNLSHNQLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNISGR 911

Query: 794 VPN-KGQFANFDESNYRGNPYLCGPAVRKNC--SSELPPTPATSAEEDESAIDM 844
           VP+ K QFA FDESNY GNP+LCG  +++ C  S E P  P+ S E +    D+
Sbjct: 912 VPDTKAQFATFDESNYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDI 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183409|ref|NP_176115.2| receptor like protein 9 [Arabidopsis thaliana] gi|332195389|gb|AEE33510.1| receptor like protein 9 [Arabidopsis thaliana]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 376/896 (41%), Positives = 532/896 (59%), Gaps = 83/896 (9%)

Query: 3   VQMHAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATT 62
           +QM    SC++ ER GLLE+KA++    + +Y+      W ++  SDCC WER++C+ T+
Sbjct: 20  LQMQGYISCIEKERKGLLELKAYV----NKEYS----YDWSNDTKSDCCRWERVECDRTS 71

Query: 63  GRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGW-EENKAYNTS 121
           GRV+ L L+   Q  SD +     +IN+SLF PF+EL  L+L D    GW ++   Y + 
Sbjct: 72  GRVIGLFLN---QTFSDPI-----LINLSLFHPFEELRTLNLYDFGCTGWFDDIHGYKSL 123

Query: 122 RSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLD 181
             LK+L+IL++G N  N S++P L + +SL +L L GN+  EG    K L +L NLE+LD
Sbjct: 124 GKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNM-EGTFPMKELKDLSNLELLD 182

Query: 182 LSGNRI-----------------------TGSLIMQGICDLKNLVELNINENEFDGLLPQ 218
           LSGN +                       +GSL  +G+C LKNL EL++++NEF G  PQ
Sbjct: 183 LSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQELDLSQNEFTGPFPQ 242

Query: 219 CLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
           C S+LT L+VLD+SSN+ +G LP SVI+NL SLEYLSL DN F+  F   ++AN S+L+V
Sbjct: 243 CFSSLTQLQVLDMSSNQFNGTLP-SVISNLDSLEYLSLSDNKFEGFFSFDLIANLSKLKV 301

Query: 279 FQLSR----LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
           F+LS     L +E+E    L KF+L V++L++CN+   +P FLQ Q D R I+LS+N L 
Sbjct: 302 FKLSSKSSLLHIESEISLQL-KFRLSVIDLKYCNLEA-VPSFLQQQKDLRLINLSNNKLT 359

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV-ISNNSFIGKLPENFGLIL 393
              P+W L+N  KL ++ L+NN  T    LP    +  H++ +S N F   LP N G +L
Sbjct: 360 GISPSWFLENYPKLRVLLLWNNSFT-IFHLPRLLVHSLHVLDLSVNKFDEWLPNNIGHVL 418

Query: 394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453
           P + +L++S N F+G++P S   M+++ FLDLS NN S  LPK F   C SL  + LS+N
Sbjct: 419 PNISHLNLSNNGFQGNLPSSFSEMKKIFFLDLSHNNLSGSLPKKFCIGCSSLSILKLSYN 478

Query: 454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGK 513
            F G+IFP+ M L  L  L  ++NQFT   +V L+++  L  L++SNN L G +P W G 
Sbjct: 479 RFSGKIFPQPMKLESLRVLIADNNQFTEITDV-LIHSKGLVFLELSNNSLQGVIPSWFGG 537

Query: 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLEFSSNHSSLRYLFPHN 571
           F  L  L +S N   G +   L N+   ++LD+S NK  G  P  FS  H  L YL  H+
Sbjct: 538 FYFL-YLSVSDNLLNGTIPSTLFNVSF-QLLDLSRNKFSGNLPSHFSFRHMGLLYL--HD 593

Query: 572 NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC 631
           N  SG +P+ LL++  L  LDLR+N+ SG I   ++    L  LLLRGN L G+IP  LC
Sbjct: 594 NEFSGPVPSTLLENVML--LDLRNNKLSGTIPRFVSNRYFL-YLLLRGNALTGHIPTSLC 650

Query: 632 HLRKLAIVDISYNTLNGPIPSCFTNISLW---------------------MEKGNYYNST 670
            L+ + ++D++ N LNG IP C  N+S                        E    Y+ +
Sbjct: 651 ELKSIRVLDLANNRLNGSIPPCLNNVSFGRSLDYEIDPDFGSSYGMVRADQELEESYSRS 710

Query: 671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG 730
           L L L  E +        V+F +K RY+SY G+  K+M GLD SSNEL G+IP E+G   
Sbjct: 711 LVLPLEFELDYSGYLDFTVEFASKRRYDSYMGESFKFMFGLDFSSNELIGEIPRELGDFQ 770

Query: 731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNL 790
            I ALNLS+N LSG +P SFSNL   ES+DLS+N L+G IP +L +L ++ +FNVSYNNL
Sbjct: 771 RIRALNLSHNSLSGLVPESFSNLTDIESIDLSFNVLHGPIPHDLTKLDYIVVFNVSYNNL 830

Query: 791 SGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAE--EDESAIDM 844
           SG +P++G+F + D +NY GNP+LCG  + K+C           +   +DE+AIDM
Sbjct: 831 SGLIPSQGKFLSLDVTNYIGNPFLCGTTINKSCDDNTSGFKEIDSHSGDDETAIDM 886

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	844
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.968	0.899	0.375	6.8e-127
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.825	0.697	0.389	5.8e-121
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.804	0.703	0.362	1.5e-106
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.739	0.700	0.387	1.8e-101
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.867	0.782	0.343	8.3e-90
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.831	0.719	0.339	8.2e-83
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.924	0.875	0.296	8.2e-67
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.804	0.578	0.294	8.5e-67
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.777	0.605	0.315	8.2e-65
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.772	0.803	0.295	1.8e-62

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 329/877 (37%), Positives = 454/877 (51%)

Query:     5 MHAPKSCLDSERIGLLEIKAFIKS-VSDMQYADAILVSWVDNRTSDCCTWERIKCNATTG 63
             +H   SC++ ER  LLE+K F+ S   + +Y D++L +W ++  SDCC WE IKCN T+ 
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEY-DSVLPTWTNDTKSDCCQWENIKCNRTSR 65

Query:    64 RVMELSLDSAIQVDSDDVN----------DGFPIINMSL--FVP----------FQELHV 101
             R+  LSL ++  ++   +N              + N  L   V            + L +
Sbjct:    66 RLTGLSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQI 125

Query:   102 LDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQGNSF 161
             L+ S N F         N + SL  L +     N +    +             L GN  
Sbjct:   126 LNFSSNEFNN-SIFPFLNAATSLTTLSLRR--NNMYGPIPLKELKNLTNLELLDLSGNRI 182

Query:   162 SEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLS 221
              +G    +    L+ L+ LDLS N I  S+  Q  C++KNL EL++    F G LP C  
Sbjct:   183 -DGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFG 241

Query:   222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
             NL  LR LDLSSN+L+GN+P S  ++L SLEYLSL DN F+  F L+ L N ++L+VF  
Sbjct:   242 NLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIF 300

Query:   282 SR----LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337
             S     +QV+ E+  W P FQL VL LR C++   IP FL YQ +   +DLS N +    
Sbjct:   301 SSKDDMVQVKIES-TWQPLFQLSVLVLRLCSLE-KIPNFLMYQKNLHVVDLSGNRISGII 358

Query:   338 PTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELV 397
             PTWLL+NN +LE++ L NN  T   Q+P S  NL  L  S N+  G  P+NFG +LP LV
Sbjct:   359 PTWLLENNPELEVLQLKNNSFT-IFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLV 417

Query:   398 YLDMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDG 457
             +++ S N F+G+ P SMG M               +LP+ F++SC SL  + LSHN F G
Sbjct:   418 HMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSG 477

Query:   458 QIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNL 517
                P+  N   L+ L +N+N FTG++ VGLL    L +LD+SNN L G+LP  +  F  L
Sbjct:   478 HFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYL 537

Query:   518 DVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT 577
             + L +S N   G +    S++ +  +L +  N   GP+   +   S++ L   NN LSG 
Sbjct:   538 NFLDLSGNLLSGALP---SHVSLDNVLFLHNNNFTGPIP-DTFLGSIQILDLRNNKLSGN 593

Query:   578 IPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLA 637
             IP             LR N  +G I   + E S               IP   C      
Sbjct:   594 IPQFVDTQDISFLL-LRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPS--C------ 644

Query:   638 IVDISYNTLNGP-IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNR 696
               ++S+       I + +  ++L      +Y ST  +     D     + ++VKF  K R
Sbjct:   645 FNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFE-IDVKFATKQR 703

Query:   697 YESYKG------DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSF 750
             Y+SY G        L  M GLDLSSNEL+G IP+E+G L ++ ALNLS+NFLS  IP SF
Sbjct:   704 YDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSF 763

Query:   751 SNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRG 810
             S L+  ES+DLSYN L G IP +L  L+ LAIFNVSYNNLSG +P   QF  FDE++Y G
Sbjct:   764 SKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLG 823

Query:   811 NPYLCGPAVRKNCSSELPPTP-ATSAEED--ESAIDM 844
             NP LCGP    +C ++      A   EED  E AIDM
Sbjct:   824 NPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDM 860

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 292/749 (38%), Positives = 418/749 (55%)

Query:   122 RSLKQLKILNIGYNSFNESL-VPXXXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVL 180
             R L  +++L++  N FN S+ V             L  N FS                 +
Sbjct:   195 RDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSS---------------V 239

Query:   181 DLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
             +L G +   +  + G C  KN+ EL ++ N+  G  P CL++LT LRVLDLSSN+L+GN+
Sbjct:   240 ELQG-KFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNV 298

Query:   241 PLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL----SRLQVETENFPWLPK 296
             P S +ANL SLEYLSLF N+F+  F L +LAN S+L+V +L    + L+VE E   W PK
Sbjct:   299 P-SALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFET-SWKPK 356

Query:   297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
             FQL V+ LR CN+   +P FL +Q D  ++DLSDN +   FP+WLL+NNTKLE++ L NN
Sbjct:   357 FQLVVIALRSCNLE-KVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNN 415

Query:   357 FLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY 416
               T + QLP S  NL  L +S N F     +NFG ILP LV ++++ N F+G++P S+  
Sbjct:   416 SFT-SFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDN 474

Query:   417 MERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
             M+               LP+ FL  C +L  + LSHN   G++FP+  N  +L  + +++
Sbjct:   475 MKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDN 534

Query:   477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS 536
             N FTG +  G  +  SL VLD+SNN L+G +P WIG+   L  L +S N  EG++   L 
Sbjct:   535 NLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLF 594

Query:   537 NLEVARILDISENKLYG--PLEFSS-NHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDL 593
             N+   ++LD+S N+L G  P   SS  H ++  L   NN+LSG IP+           DL
Sbjct:   595 NISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLL--QNNNLSGVIPDTLLLNVIVL--DL 650

Query:   594 RDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPE--PLCHLRKLAIVDISYNTLNGPIP 651
             R+N  SGN+   IN  +                 +   L +++ L + +  +N  + P  
Sbjct:   651 RNNRLSGNLPEFINTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNG-SIPSC 709

Query:   652 SCFTNISLWMEKGNY-YN-----STL-------SLALPAEDN--RESSQRVEVKFMAKNR 696
                T+  L     +Y Y+      T        SL +  E N   E++ + +++F  K+R
Sbjct:   710 LSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHR 769

Query:   697 YESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMT 756
             Y++Y G  LK + G+DLS NEL+G+IP E+G L E+ ALNLS+N LSG I  SFS LK  
Sbjct:   770 YDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNV 829

Query:   757 ESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG 816
             ES+DLS+N+L G IP +L ++  LA+FNVSYNNLSG VP   QF  F+  +Y GNP LCG
Sbjct:   830 ESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCG 889

Query:   817 PAVRKNCSSE-LPPTPATSAEEDESAIDM 844
              ++  +C+S    PT     E DES +DM
Sbjct:   890 KSIDISCASNNFHPTD-NGVEADESTVDM 917

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
 Identities = 267/737 (36%), Positives = 392/737 (53%)

Query:    97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXXXXF- 155
             ++L +LDL+ N+F     N  ++   +   L  L +  N+ + S                
Sbjct:   132 RKLEILDLASNKFN----NSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLD 187

Query:   156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQG-------------ICDLKNL 202
             L  N F+      + L +LR L+ LDLSGN  +GS+ +QG             IC+L N+
Sbjct:   188 LSRNRFNGSIPIQE-LSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNM 246

Query:   203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
              EL++++N+  G LP CL++LT LRVLDLSSNKL+G +P S + +L SLEYLSLFDN F+
Sbjct:   247 QELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFE 305

Query:   263 ESFPLSVLANHSRLEVFQL----SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQ 318
              SF    LAN S L V +L    S LQV +E+  W PKFQL V+ LR CN+   +P FL 
Sbjct:   306 GSFSFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLL 363

Query:   319 YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISN 378
             +Q D R++DLSDNN+    P+WLL NNTKL+++ L NN  T + Q+P S  NL  L +S 
Sbjct:   364 HQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLFLDVSA 422

Query:   379 NSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHF 438
             N F    PEN G I P L YL+ S+N+F+ ++P S+G M               +LP+ F
Sbjct:   423 NDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSF 482

Query:   439 LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498
             +  C S+  + LSHN   G+IFP+  N   ++ LF+++N FTG++  GL +  +L +LD+
Sbjct:   483 VNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDM 542

Query:   499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLE 556
             SNN L+G +P WIG+  +L  LL+S N  +GD+ + L N    ++LD+S N L G  P +
Sbjct:   543 SNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQ 602

Query:   557 FSSNHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXX 616
               S +  +  L   +N LSGTIP+           DLR+N FSG I   IN  +      
Sbjct:   603 HDSRNGVVLLL--QDNKLSGTIPDTLLANVEIL--DLRNNRFSGKIPEFINIQNISILLL 658

Query:   617 XXXXXXXXXIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG-NYYNSTLSLAL 675
                      IP  LC L  + ++D+S N LNG IPSC +N S    K    Y+    ++ 
Sbjct:   659 RGNNFTGQ-IPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISF 717

Query:   676 PAEDNRESSQRVEVKFMAKNRYESYK--GDVLKYMTGLDLSSNELTGDIPSEI------- 726
             P++        V   F     + S K  G   K +  LD  S +      ++I       
Sbjct:   718 PSD--------VFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHR 769

Query:   727 --GYLGE----IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL 780
                Y+G     +  ++LS N LSG IP  F  L    +++LS+N L+G IP  +  +  +
Sbjct:   770 YDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKM 829

Query:   781 AIFNVSYNNLSGTVPNK 797
               F++S+N L G +P++
Sbjct:   830 ESFDLSFNRLQGRIPSQ 846

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 253/653 (38%), Positives = 360/653 (55%)

Query:   156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
             L+ N FS G    + L NLRNL  LDLS N+ +GSL  QGIC L+ L EL ++ N F+G 
Sbjct:   135 LKFNKFS-GQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGE 193

Query:   216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
             +P C S  + LRVLDLSSN LSG +P   I++  S+EYLSL DN F+  F L ++   + 
Sbjct:   194 IPLCFSRFSKLRVLDLSSNHLSGKIPY-FISDFKSMEYLSLLDNDFEGLFSLGLITELTE 252

Query:   276 LEVFQLSR----LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN 331
             L+VF+LS     LQ+   N     + QL  + L HCN+ G IP FL YQ + R IDLS+N
Sbjct:   253 LKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL-GKIPGFLWYQQELRVIDLSNN 311

Query:   332 NLVDTFPTWLLQNNTKLEIMFLFNN-FLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFG 390
              L   FPTWLL+NNT+L+ + L NN F T  L LP + R L  L +S N+F  +LP++ G
Sbjct:   312 ILSGVFPTWLLENNTELQALLLQNNSFKT--LTLPRTMRRLQILDLSVNNFNNQLPKDVG 369

Query:   391 LILPELVYLDMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNL 450
             LIL  L +L++S N F G++P SM  ME               LP++  T C SL ++ L
Sbjct:   370 LILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKL 429

Query:   451 SHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW 510
             SHN F G I  K  +   L+ L +++N FTG++   LLN   L V+D+SNN+L+G +PRW
Sbjct:   430 SHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRW 489

Query:   511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFP- 569
             +G F  L+VL +S N  +G +   L N+    +LD+S N L G L   S+ S   Y+   
Sbjct:   490 LGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSS-SDYGYILDL 547

Query:   570 HNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEP 629
             HNN+L+G+IP+           DLR+N+ SGNI  L                    IP  
Sbjct:   548 HNNNLTGSIPDTLWYGLRLL--DLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVE 604

Query:   630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAE--DN-RESSQR 686
             LC L  + ++D ++N LN  IPSC TN+S     G + N+  S   PA    N  E    
Sbjct:   605 LCGLSNVRMLDFAHNRLNESIPSCVTNLSFG--SGGHSNAD-SDWYPASLLSNFMEIYTE 661

Query:   687 VEVK-FMAKNRYE-SYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG 744
             V  +  +  +R+   Y  D   +   ++ +  +   D+    G L ++  L+LS+N LSG
Sbjct:   662 VYYESLIVSDRFSLDYSVD---FNVQVEFAVKQRY-DLYMR-GTLNQMFGLDLSSNELSG 716

Query:   745 SIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797
             +IP    +LK   S++LS N L+G IP     L  +   ++S+N L GT+P++
Sbjct:   717 NIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQ 769

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 266/775 (34%), Positives = 388/775 (50%)

Query:    85 FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPX 144
             FP +N +       L  L L+ N  +G    K     + L  L++L++  N  N S+   
Sbjct:   141 FPFLNAAT-----SLTTLILTYNEMDGPFPIKGL---KDLTNLELLDLRANKLNGSMQEL 192

Query:   145 XXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
                        L  N FS   +  + L NL NLEVL L+ N + G + ++  C LKNL +
Sbjct:   193 IHLKKLKALD-LSSNKFSSSMELQE-LQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRD 250

Query:   205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
             L++  N F G +P CL +L  LRVLDLSSN+LSG+LP S  ++L SLEYLSL DN+F  S
Sbjct:   251 LDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSS-FSSLESLEYLSLSDNNFDGS 309

Query:   265 FPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQ--LKVLNLRHCNISGTIPRFLQYQY- 321
             F L+ L N + L+   + R     E  P    +Q  L++++L   N+SG IP +L     
Sbjct:   310 FSLNPLTNLTNLKFVVVLRF-CSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNP 368

Query:   322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
             +   + L +N+    FP   + +N ++   F  NN      ++ ++  NL  L  SNN F
Sbjct:   369 ELEVLQLQNNSFT-IFPIPTMVHNLQI-FDFSANNIGKFPDKMDHALPNLVRLNGSNNGF 426

Query:   382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSM--GYMERXXXXXXXXXXXXRDLPKHFL 439
              G  P + G  +  + +LD+S N+F G +P S   G +              R LP+   
Sbjct:   427 QGYFPTSIGE-MKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRE-- 483

Query:   440 TSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL-YVLDV 498
             T+  SL+ + + +N F G I     N   L  L +++N  +G +   L     L YVL +
Sbjct:   484 TNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVL-I 542

Query:   499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
             SNN L G +P  +     L  L +S N F G +   + + E+   + +  N   GP+   
Sbjct:   543 SNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDS-ELGIYMFLHNNNFTGPIP-D 600

Query:   559 SNHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXX 618
             +   S++ L   NN LSG+IP             L+ N  +G+I   + + S        
Sbjct:   601 TLLKSVQILDLRNNKLSGSIPQFDDTQSINILL-LKGNNLTGSIPRELCDLSNVRLLDLS 659

Query:   619 XXXXXXXIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAE 678
                    IP   C L  L+   +  + +   IP  F   SL ME    Y ST  L    E
Sbjct:   660 DNKLNGVIPS--C-LSNLSFGRLQEDAMALNIPPSFLQTSLEME---LYKSTF-LVDKIE 712

Query:   679 DNRESSQRVEVKFMAKNRYESYKG------DVLKYMTGLDLSSNELTGDIPSEIGYLGEI 732
              +R + Q  E+KF AK RY+SY G       +L+ M G+DLS+NEL+G IP+E+G L ++
Sbjct:   713 VDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKL 772

Query:   733 HALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792
               LNLS+N L GSIP SFS L   ES+DLS+N L G IP  L  L+ LA+F+VS NNLSG
Sbjct:   773 RTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSG 832

Query:   793 TVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDE---SAIDM 844
              +P   QF  F+E +Y GNP LCGP   ++C +   P  A + +E+E   +AIDM
Sbjct:   833 IIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDM 887

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 267/786 (33%), Positives = 382/786 (48%)

Query:    98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQ 157
             +L +LDLS + + G     +      L++LK L++  N F+ SLV             L 
Sbjct:   188 KLELLDLSRSGYNG-----SIPEFTHLEKLKALDLSANDFS-SLVELQELKVLTNLEVL- 240

Query:   158 GNSFS--EGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGIC--DLKNLVELNINENEFD 213
             G +++  +G    +    ++NL  LDL GN   G L    +C  +L  L  L+++ N+  
Sbjct:   241 GLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQL---PVCLGNLNKLRVLDLSSNQLS 297

Query:   214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH 273
             G LP   ++L  L  L LS N   G   L+ +ANLT L+            F LS     
Sbjct:   298 GNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKV-----------FRLS----- 341

Query:   274 SRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
             S  E+     LQVETE+  WLPKFQL V  L  C++ G IP FL YQ + R +DLS N L
Sbjct:   342 STSEM-----LQVETES-NWLPKFQLTVAALPFCSL-GKIPNFLVYQTNLRLVDLSSNRL 394

Query:   334 VDTFPTWLLQNNTKLEIMFLFNNFLT--------GNLQ------------LP-NSKRNLP 372
                 PTWLL+NN +L+++ L NN  T          LQ            LP N    LP
Sbjct:   395 SGDIPTWLLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPDNIGHVLP 454

Query:   373 ---HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM--GYMERXXXXXXXX 427
                H+  S+N F G LP + G  + ++ +LD+S N+F G +P S+  G            
Sbjct:   455 RLLHMNGSHNGFQGNLPSSMGE-MNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHN 513

Query:   428 XXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGL 487
                   LP    T   SL  + + +N F G+I      L  L     ++N+ TG +   +
Sbjct:   514 SFSGPILP--IQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSI 571

Query:   488 L-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI 546
               ++S L +L +SNN+L G LP  +    +L+ L +S N   GD+   + N      + +
Sbjct:   572 PPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFL 631

Query:   547 SENKLYGPLEFSSNHSSLRYLFP-HNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHL 605
               N   GPL  +   ++  Y+    NN LSG+IP             LR N  +G+I   
Sbjct:   632 HNNSFTGPLPVTLLENA--YILDLRNNKLSGSIPQFVNTGKMITLL-LRGNNLTGSIPRK 688

Query:   606 INEDSXXXXXXXXXXXXXXXIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGN 665
             + + +               IP  L HL       I  +  +  I   F + SL ME   
Sbjct:   689 LCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEIS--FGD-SLQME--- 742

Query:   666 YYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE 725
             +Y ST  +         +   VE++F AK RY+S+ G  L YM GLDLSSNEL+G IP+E
Sbjct:   743 FYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAE 802

Query:   726 IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV 785
             +G L ++ ALNLS N LS SIP +FS LK  ES+DLSYN L G IP +L  L+ LA+FNV
Sbjct:   803 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNV 862

Query:   786 SYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSA-------EED 838
             S+NNLSG +P  GQF  F++++Y GNP LCG    ++C  +     A +        ++D
Sbjct:   863 SFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDD 922

Query:   839 ESAIDM 844
             E+AIDM
Sbjct:   923 EAAIDM 928

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 250/844 (29%), Positives = 384/844 (45%)

Query:    11 CLDSERIGLLEIK-AF-IKSV-SDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVME 67
             CL  +R  LLE K  F I S  SD+         W +N  +DCC+W  I C+  TG V+E
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNN--TDCCSWGGISCDPKTGVVVE 83

Query:    68 LSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQL 127
             L L ++      D+N G    N SLF   Q L  LDLS N           ++S + K L
Sbjct:    84 LDLGNS------DLN-GRLRSNSSLF-RLQHLQSLDLSYNDLSC----TLPDSSGNFKYL 131

Query:   128 KILNI-GYNSFNESLVPXXXXXXXXXXXF-LQGNSFSEGFKHNKGLVNLRNLEVLDLSGN 185
             ++LN+ G N F E  +P             L  N    G +    + NL++L VL L+  
Sbjct:   132 RVLNLLGCNLFGE--IPTSLRSLSYLTDLDLSYNDDLTG-EILDSMGNLKHLRVLSLTSC 188

Query:   186 RITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVI 245
             + TG  I   + +L  L +L+++ N F G LP  + NL  LRVL+L      G +P S +
Sbjct:   189 KFTGK-IPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTS-L 246

Query:   246 ANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL--------SRLQVETENFP-WLPK 296
              +L++L  L +  N F    P S +++ +RL  FQL        + + + +  F   LP 
Sbjct:   247 GSLSNLTDLDISKNEFTSEGPDS-MSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPS 305

Query:   297 -----FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIM 351
                   +L+  ++   + SGTIP  L        +DL  N+         + + + L+ +
Sbjct:   306 NMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGNISSPSNLQEL 365

Query:   352 FLFNNFLTGNLQLPNSKRNLPHLVISNNSF--IGKLPE-NFGLILPELVYLDMSQNSFEG 408
             ++  N + G   +P S   L  L   + SF   G + + +  L L  L  LD+S  +   
Sbjct:   366 YIGENNING--PIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLNI 423

Query:   409 SIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM-NLA 467
             S   S  ++                 PK FL +  SL  +++S N  +GQ+ P+++  L 
Sbjct:   424 S---SSHHLPSHMMHLILSSCNISQFPK-FLENQTSLYHLDISANQIEGQV-PEWLWRLP 478

Query:   468 KLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSF 527
              L ++ +  N F+G L + L N   +Y    S+N  SG++PR +     +  L++S N+F
Sbjct:   479 TLRYVNIAQNAFSGELTM-LPNP--IYSFIASDNKFSGEIPRAV---CEIGTLVLSNNNF 532

Query:   528 EGDVS--VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAXXXX 585
              G +    ++SN  ++ IL +  N L G +   S H  LR L   +N LSG  P +    
Sbjct:   533 SGSIPPCFEISNKTLS-ILHLRNNSLSGVIPEESLHGYLRSLDVGSNRLSGQFPKSLINC 591

Query:   586 XXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXI--PEPLCHLRKLAIVDISY 643
                   ++ +N  +      +                   I  P       KL   DIS 
Sbjct:   592 SYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISE 651

Query:   644 NTLNGPIPS-CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG 702
             N  +G +PS  F   S+     +  ++T    +  +D     + V +     N      G
Sbjct:   652 NRFSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSG 711

Query:   703 DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS 762
               + Y T +D+S N L GDIP  IG L E+  LN+SNN  +G IP S SNL   +S+DLS
Sbjct:   712 FEI-YKT-IDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLS 769

Query:   763 YNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKN 822
              N+L+G IP ELGEL+FLA  N SYN L G +P   Q  + + S++  NP LCG  ++K 
Sbjct:   770 QNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKK 829

Query:   823 CSSE 826
             C  E
Sbjct:   830 CGGE 833

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 8.5e-67, P = 8.5e-67
 Identities = 208/706 (29%), Positives = 324/706 (45%)

Query:   123 SLKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
             +L  L++L++  NSF   +              L  N FS       G+  L+N+  LDL
Sbjct:    94 NLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIP--SGIWELKNIFYLDL 151

Query:   183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
               N ++G  + + IC   +LV +  + N   G +P+CL +L +L++   + N L+G++P+
Sbjct:   152 RNNLLSGD-VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPV 210

Query:   243 SV--IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLK 300
             S+  +ANLT L+   L  N      P     N   L+   L+   +E +    +      
Sbjct:   211 SIGTLANLTDLD---LSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSL 266

Query:   301 V-LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT 359
             V L L    ++G IP  L      + + +  N L  + P+ L +  T+L  + L  N L 
Sbjct:   267 VQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLV 325

Query:   360 GNLQLP-NSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
             G +        +L  L + +N+F G+ P++    L  L  L +  N+  G +P  +G + 
Sbjct:   326 GPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNISGELPADLGLLT 384

Query:   419 RXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
                            +P   +++C  L+ ++LSHN   G+I P+      L F+ +  N 
Sbjct:   385 NLRNLSAHDNLLTGPIPSS-ISNCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNH 442

Query:   479 FTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL 538
             FTG +   + N S+L  L V++N L+G L   IGK   L +L +S NS  G +  ++ NL
Sbjct:   443 FTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502

Query:   539 EVARILDISENKLYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRDN 596
             +   IL +  N   G  P E S N + L+ L  ++N L G IP            DL +N
Sbjct:   503 KDLNILYLHSNGFTGRIPREMS-NLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNN 561

Query:   597 EFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLAIVDISYNTLNGPIP----S 652
             +FSG I  L ++                 IP  L  L  L   DIS N L G IP    +
Sbjct:   562 KFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLA 621

Query:   653 CFTNISLWMEKGNYYNSTLSLALPAEDNR-ESSQRVEVKFMAKNRYESYKGDVLKYMTGL 711
                N+ L++   N+ N+ L+  +P E  + E  Q +++     +          K +  L
Sbjct:   622 SLKNMQLYL---NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTL 678

Query:   712 DLSSNELTGDIPSEIGY-LGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI 770
             D S N L+G IP E+   +  I +LNLS N  SG IP+SF N+    S+DLS N L G+I
Sbjct:   679 DFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEI 738

Query:   771 PPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG 816
             P  L  LS L    ++ NNL G VP  G F N + S+  GN  LCG
Sbjct:   739 PESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG 784

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 8.2e-65, P = 8.2e-65
 Identities = 216/684 (31%), Positives = 324/684 (47%)

Query:   170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNL-TYLRV 228
             G+  L  L  LDLS N +T      G  +L +L  L+++ N+ +G L   +S L + L  
Sbjct:   353 GICRLMKLRELDLSSNALTSLPYCLG--NLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEY 410

Query:   229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDN-HFQESFPLSVLANHSRLEVFQLSRLQVE 287
             L L  N   G+   + + N T L    L       +    S  A   +L++  LS   + 
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLG 470

Query:   288 TENFPWLP-KFQLKVLNLRHCNISGTIPRFL-QYQYDFRYIDLSDNNLVDTFPTWLLQNN 345
             +    +L  +  L  ++L H  ++GT P +L +     + I LS N+L       L+   
Sbjct:   471 STMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHG- 529

Query:   346 TKLEIMFLFNNFLTGNLQ--LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403
               L+++ + +N +  ++Q  +     NL  +  S+N F G +P + G  +  L  LDMS 
Sbjct:   530 --LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGE-MKSLQVLDMSS 586

Query:   404 NSFEGSIPPSM--GYMERXXXXXXXXXXXXRDLPKHF-LTSCVSLEFMNLSHNYFDGQIF 460
             N   G +P     G                +   KH  LT  V L F  L  N F G + 
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGL-F--LDGNNFTGSLE 643

Query:   461 PKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVL 520
                +    L  L ++DN+F+G L + +   S L  L +S N L G  P ++ +   ++V+
Sbjct:   644 EGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP-FLRQSPWVEVM 702

Query:   521 LMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIP 579
              +S NSF G +   + N    R L +  N+  G +  +    + L  L   NN+ SG I 
Sbjct:   703 DISHNSFSGSIPRNV-NFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKIL 761

Query:   580 NAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLAIV 639
             N            LR+N F   I   I + S               IP   C  +     
Sbjct:   762 NTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPS--CFSKMSFGA 819

Query:   640 DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYES 699
             + +  T++      F+ I+        Y S L+L     +  +      V F+ K+RYE+
Sbjct:   820 EQNDRTMSLVADFDFSYITFLPHC--QYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEA 877

Query:   700 YKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESM 759
             Y+GD+L+YM GLDLSSNEL+G+IP EIG L  I +LNLS+N L+GSIP S S LK  ES+
Sbjct:   878 YQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESL 937

Query:   760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAV 819
             DLS NKL+G IPP L +L+ L   N+SYNNLSG +P KG    FDE +Y GN +LCG   
Sbjct:   938 DLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPT 997

Query:   820 RKNCSSEL---PPTPATSAEEDES 840
              KNC S+    PP+ +T A+E+E+
Sbjct:   998 NKNCISQRVPEPPSVSTHAKEEEN 1021

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 208/704 (29%), Positives = 335/704 (47%)

Query:   171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLT-YLRVL 229
             + N  NL+ L+LS N   G      + +   L  L++++N F+G LP  ++ L   L+ L
Sbjct:    83 ICNFPNLKSLNLSFNYFAGEFPTV-LYNCTKLQYLDLSQNLFNGSLPDDINRLAPKLKYL 141

Query:   230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR------ 283
             DL++N  +G++P + I  ++ L+ L+L+ + +  +FP S + + S LE  QL+       
Sbjct:   142 DLAANSFAGDIPKN-IGRISKLKVLNLYMSEYDGTFP-SEIGDLSELEELQLALNDKFTP 199

Query:   284 LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL-QYQYDFRYIDLSDNNLVDTFPTWL- 341
             +++ TE F  L K  LK + L   N+ G I   + +   D +++DLS NNL    P  L 
Sbjct:   200 VKLPTE-FGKLKK--LKYMWLEEMNLIGEISAVVFENMTDLKHVDLSVNNLTGRIPDVLF 256

Query:   342 -LQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFG-LILPELVYL 399
              L+N T+L   +LF N LTG +    S +NL HL +S N+  G +PE+ G L   EL+YL
Sbjct:   257 GLKNLTEL---YLFANDLTGEIPKSISAKNLVHLDLSANNLNGSIPESIGNLTNLELLYL 313

Query:   400 DMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQI 459
              +  N   G IP ++G +               ++P   +     LE   +S N   G++
Sbjct:   314 FV--NELTGEIPRAIGKLPELKELKLFTNKLTGEIPAE-IGFISKLERFEVSENQLTGKL 370

Query:   460 FPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLY-VL----------DVSNNMLS---- 504
                  +  KL  + +  N  TG +   L +  +L  VL           +SNN  S    
Sbjct:   371 PENLCHGGKLQSVIVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGSVTISNNTRSNNNF 430

Query:   505 -GQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSS 563
              G++P +I +  +L +L +S N F G +   ++NL    +L++ +N L G +  + + +S
Sbjct:   431 TGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGSIPENIS-TS 489

Query:   564 LRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXX 623
             ++ +   +N L+G +P +          ++  N+ +      ++                
Sbjct:   490 VKSIDIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTFPFWLDSMQQLQVLVLRSNAFH 549

Query:   624 XXIPEPLCHLRKLAIVDISYNTLNGPIP-SCFTNISLWMEKGNYYNSTLSLALPAEDNRE 682
               I +      KL I+DIS N  NG +P   F N +     G   +  +       +   
Sbjct:   550 GSINQN--GFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRTNYYS 607

Query:   683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFL 742
              S  V +K +A    E  +  +L   T +D S N+  G+IP  +G L E+H LNLSNN  
Sbjct:   608 DSIVVMIKGIA---LEMVR--ILNTFTTIDFSGNKFEGEIPRSVGLLKELHVLNLSNNGF 662

Query:   743 SGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN 802
             +G IP S  NL   ES+D+S NKL+G+IPPELG+LS+LA  N S N   G VP   QF  
Sbjct:   663 TGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFVGLVPGGTQFQT 722

Query:   803 FDESNYRGNPYLCGPAVRKNCSSELPPTPATSA----EEDESAI 842
                S++  NP L G ++ + C      TP  S     EEDE  +
Sbjct:   723 QPCSSFADNPRLFGLSLERVCVDIHKKTPQQSEMPEPEEDEEEV 766

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	844
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  232 bits (593), Expect = 4e-64
 Identities = 173/540 (32%), Positives = 280/540 (51%), Gaps = 25/540 (4%)

Query: 299 LKVLNLRHCNISGTIPRFLQY-QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
           ++ +NL +  +SG IP  +       RY++LS+NN   + P   + N   LE + L NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 358 LTGNLQLPN---SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414
           L+G  ++PN   S  +L  L +  N  +GK+P +    L  L +L ++ N   G IP  +
Sbjct: 152 LSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPREL 208

Query: 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474
           G M+ L ++ L  NN S ++P   +    SL  ++L +N   G I     NL  L +LFL
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ 534
             N+ +G +   + +   L  LD+S+N LSG++P  + +  NL++L +  N+F G + V 
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 535 LSNLEVARILDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593
           L++L   ++L +  NK  G +  +   H++L  L    N+L+G IP  L  S  L  L L
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC 653
             N   G I   +    +LR + L+ N+  G +P     L  +  +DIS N L G I S 
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 654 FTNI-SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESY---KGDVLKYMT 709
             ++ SL M   +   +     LP   +   S+R+E   +++N++      K   L  + 
Sbjct: 448 KWDMPSLQML--SLARNKFFGGLP---DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ 769
            L LS N+L+G+IP E+    ++ +L+LS+N LSG IP SFS + +   +DLS N+L+G+
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 770 IPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELPP 829
           IP  LG +  L   N+S+N+L G++P+ G F   + S   GN  LCG     + +S LPP
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG----GDTTSGLPP 618

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  197 bits (503), Expect = 2e-52
 Identities = 173/576 (30%), Positives = 268/576 (46%), Gaps = 110/576 (19%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
           +L  L+LS N  TGS I +G   + NL  L+++ N   G +P  + + + L+VLDL  N 
Sbjct: 119 SLRYLNLSNNNFTGS-IPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 236 LSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLP 295
           L G +P S + NLTSLE+L+L  N      P             +L +++          
Sbjct: 176 LVGKIPNS-LTNLTSLEFLTLASNQLVGQIPR------------ELGQMK---------- 212

Query: 296 KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFN 355
              LK + L + N+SG IP  +       ++DL  NNL    P+  L N   L+ +FL+ 
Sbjct: 213 --SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQ 269

Query: 356 NFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415
           N L+G   +P S  +                      L +L+ LD+S NS  G IP  + 
Sbjct: 270 NKLSG--PIPPSIFS----------------------LQKLISLDLSDNSLSGEIPELVI 305

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAK---LVFL 472
            ++ L  L L SNNF+  +P   LTS   L+ + L  N F G+I PK  NL K   L  L
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEI-PK--NLGKHNNLTVL 361

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS 532
            L+ N  TG +  GL ++ +L+ L + +N L G++P+ +G   +L  + +  NSF G++ 
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 533 VQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL 591
            + + L +   LDIS N L G +     +  SL+ L    N   G +P+    S +L  L
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENL 480

Query: 592 DLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP 651
           DL  N+FSG +   +   S L  L L  N L G IP+ L   +KL  +D+S+N L+G IP
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 652 SCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGL 711
           + F+ + +                                                ++ L
Sbjct: 541 ASFSEMPV------------------------------------------------LSQL 552

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747
           DLS N+L+G+IP  +G +  +  +N+S+N L GS+P
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  161 bits (409), Expect = 1e-40
 Identities = 124/407 (30%), Positives = 199/407 (48%), Gaps = 41/407 (10%)

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
           +V +D+S  +  G I  ++  +  +  ++LS+N  S  +P    T+  SL ++NLS+   
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN--- 127

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
                                N FTG +  G +   +L  LD+SNNMLSG++P  IG FS
Sbjct: 128 ---------------------NNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLEFSSNHSSLRYLFPHNNS 573
           +L VL +  N   G +   L+NL     L ++ N+L G  P E      SL++++   N+
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNN 223

Query: 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
           LSG IP  +   + L  LDL  N  +G I   +    NL+ L L  N L G IP  +  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 634 RKLAIVDISYNTLNGPIPSC---FTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVK 690
           +KL  +D+S N+L+G IP       N+ +     N +   + +AL       S  R++V 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL------TSLPRLQVL 337

Query: 691 FMAKNRYE-SYKGDVLKY--MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747
            +  N++      ++ K+  +T LDLS+N LTG+IP  +   G +  L L +N L G IP
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTV 794
           +S    +    + L  N  +G++P E  +L  +   ++S NNL G +
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (341), Expect = 2e-32
 Identities = 125/396 (31%), Positives = 187/396 (47%), Gaps = 53/396 (13%)

Query: 124 LKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLS 183
           L  L  L++ YN+    +   L +L +L  LFL  N  S        + +L+ L  LDLS
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLS 292

Query: 184 GNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLP-- 241
            N ++G  I + +  L+NL  L++  N F G +P  L++L  L+VL L SNK SG +P  
Sbjct: 293 DNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Query: 242 LSVIANLTSLEYLSLFDNHFQESFP--LSVLANHSRLEVFQLSRLQVETENFPWLPKFQL 299
           L    NLT L+   L  N+     P  L    N  +L +F  S                 
Sbjct: 352 LGKHNNLTVLD---LSTNNLTGEIPEGLCSSGNLFKLILFSNS----------------- 391

Query: 300 KVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF---LFNN 356
                    + G IP+ L      R + L DN+     P       TKL +++   + NN
Sbjct: 392 ---------LEGEIPKSLGACRSLRRVRLQDNSFSGELP----SEFTKLPLVYFLDISNN 438

Query: 357 FLTGNLQLPNSKR----NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
            L G +   NS++    +L  L ++ N F G LP++FG     L  LD+S+N F G++P 
Sbjct: 439 NLQGRI---NSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPR 493

Query: 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
            +G +  L+ L LS N  S ++P   L+SC  L  ++LSHN   GQI   +  +  L  L
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP 508
            L+ NQ +G +   L N  SL  +++S+N L G LP
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
           ++ GL L +  L G IP++I  L  + ++NLS N + G+IP S  ++   E +DLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 767 NGQIPPELGELSFLAIFNVSYNNLSGTVPNK--GQFANFDESNYRGNPYLCG-PAVRKNC 823
           NG IP  LG+L+ L I N++ N+LSG VP    G+  +    N+  N  LCG P +R  C
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRA-C 537

Query: 824 SSELP 828
              L 
Sbjct: 538 GPHLS 542

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 5e-09
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 97  QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKI---LNIGYNSFNESLVPLLTSLTSLTS 153
           + L  + L DN F G              +L +   L+I  N+    +      + SL  
Sbjct: 404 RSLRRVRLQDNSFSG-------ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 154 LFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD 213
           L L  N F  G   + G   L NL   DLS N+ +G+ + + +  L  L++L ++EN+  
Sbjct: 457 LSLARNKFFGGLPDSFGSKRLENL---DLSRNQFSGA-VPRKLGSLSELMQLKLSENKLS 512

Query: 214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           G +P  LS+   L  LDLS N+LSG +P S  + +  L  L L  N      P
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
           LR+L+ ++LSGN I G+ I   +  + +L  L+++ N F+G +P+ L  LT LR+L+L+ 
Sbjct: 441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 234 NKLSGNLPLSV 244
           N LSG +P ++
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 363 QLPNSKRNLPHLV---ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMER 419
            +PN    L HL    +S NS  G +P + G I   L  LD+S NSF GSIP S+G +  
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 420 LLFLDLSSNNFSRDLP 435
           L  L+L+ N+ S  +P
Sbjct: 492 LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPL 555
           L + N  L G +P  I K  +L  + +S NS  G++   L ++    +LD+S N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 556 EFSSNH-SSLRYLFPHNNSLSGTIPNAL 582
             S    +SLR L  + NSLSG +P AL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-07
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 196 ICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255
           I  L++L  +N++ N   G +P  L ++T L VLDLS N  +G++P S +  LTSL  L+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496

Query: 256 LFDNHFQESFPLSV 269
           L  N      P ++
Sbjct: 497 LNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 25/183 (13%)

Query: 99  LHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL-TSLTS----L 151
           L  LDLSDN    +G    ++   S SL++LK+ N   N   +  + LL   L      L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN---NGLGDRGLRLLAKGLKDLPPAL 139

Query: 152 TSLFLQGNSFSEG--FKHNKGLVNLRNLEVLDLSGNRITGSLI---MQGICDLKNLVELN 206
             L L  N           K L   R+L+ L+L+ N I  + I    +G+    NL  L+
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199

Query: 207 INENEF----DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIAN-----LTSLEYLSLF 257
           +N N         L + L++L  L VL+L  N L  +   + +A+       SL  LSL 
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLS 258

Query: 258 DNH 260
            N 
Sbjct: 259 CND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPL 630
            NS+ G IP +L   + L  LDL  N F+G+I   + + ++LR L L GN+L G +P  L
Sbjct: 451 GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPL 630
           N  L G IPN + +   L +++L  N   GNI   +   ++L  L L  N+  G+IPE L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 631 CHLRKLAIVDISYNTLNGPIPS 652
             L  L I++++ N+L+G +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 48/136 (35%)

Query: 614 ALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSL 673
            L L    L+G IP  +  LR L  +++S N++ G IP    +I+               
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT--------------- 466

Query: 674 ALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIH 733
                                             +  LDLS N   G IP  +G L  + 
Sbjct: 467 ---------------------------------SLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 734 ALNLSNNFLSGSIPRS 749
            LNL+ N LSG +P +
Sbjct: 494 ILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRD 433
           L + N    G +P +    L  L  +++S NS  G+IPPS+G +  L  LDLS N+F+  
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 434 LPKHFLTSCVSLEFMNLSHNYFDGQI 459
           +P+  L    SL  +NL+ N   G++
Sbjct: 482 IPES-LGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 176 NLEVLDLSGNRITGSLIMQGIC-DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
           NL+ LDLS NR+T   I  G    L NL  L+++ N    + P+  S L  LR LDLS N
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 235 KL 236
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 448 MNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQL 507
           + L +    G I      L  L  + L+ N   G +   L + +SL VLD+S N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 508 PRWIGKFSNLDVLLMSRNSFEGDV 531
           P  +G+ ++L +L ++ NS  G V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           NL  L+++ N    +       L  L+VLDLS N L+  +     + L SL  L L  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 261 F 261
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 399 LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ 458
           L +      G IP  +  +  L  ++LS N+   ++P     S  SLE ++LS+N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481

Query: 459 IFPKYMNLAKLVFLFLNDNQFTGRL 483
           I      L  L  L LN N  +GR+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI 650
           L L +    G I + I++  +L+++ L GN+++GNIP  L  +  L ++D+SYN+ NG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 651 PSCFTNISLWMEKGNYYNSTLSLALPA 677
           P     ++  +   N   ++LS  +PA
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
           L ++     G +P  +S L +L+ ++LS N + GN+P S + ++TSLE L L  N F  S
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481

Query: 265 FPLSV 269
            P S+
Sbjct: 482 IPESL 486

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 12/243 (4%)

Query: 531 VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTT 590
           +   LS L    +L  S        E   N   L  L  + N L   I + LL+ + LT+
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTS 120

Query: 591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI 650
           LDL +N  +     +    SNL+ L L  N ++ ++P PL +L  L  +D+S+N L+  +
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-L 178

Query: 651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV--LKYM 708
           P   +N+S         N    L        E    +E   ++ N        +  LK +
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISDL----PPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
           +GL+LS+N+L  D+P  IG L  +  L+LSNN +  S   S  +L     +DLS N L+ 
Sbjct: 235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSN 291

Query: 769 QIP 771
            +P
Sbjct: 292 ALP 294

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 74/222 (33%), Positives = 99/222 (44%), Gaps = 10/222 (4%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
           LDL +NN + D+P        +L+ ++LS N     +     NL  L  L L+ N  +  
Sbjct: 121 LDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-D 177

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVAR 542
           L   L N S+L  LD+S N +S  LP  I   S L+ L +S NS    +S  LSNL+   
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLS 235

Query: 543 ILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602
            L++S NKL    E   N S+L  L   NN +S    ++L   + L  LDL  N  S N 
Sbjct: 236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS-NA 292

Query: 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
             LI     L  LLL  N L       L     L   +I  N
Sbjct: 293 LPLIALLLLLLELLL--NLLLTLKALELKLNSILLNNNILSN 332

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 493 LYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY 552
           L  +++S N + G +P  +G  ++L+VL +S NSF G +   L  L   RIL+++ N L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 553 G 553
           G
Sbjct: 504 G 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           L+ +NLS N   G I P   ++  L  L L+ N F G +   L   +SL +L+++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 505 GQLPRWIG 512
           G++P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 17/90 (18%)

Query: 83  DGFPIINMSL--FVP-----FQELHVLDLSDNRFEGWEENKAYNTSRSL---KQLKILNI 132
           DG  + N  L  F+P      + L  ++LS N   G       N   SL     L++L++
Sbjct: 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-------NIPPSLGSITSLEVLDL 473

Query: 133 GYNSFNESLVPLLTSLTSLTSLFLQGNSFS 162
            YNSFN S+   L  LTSL  L L GNS S
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 61/255 (23%), Positives = 96/255 (37%), Gaps = 43/255 (16%)

Query: 394 PELVYLDMSQNSFEGSIPPS----MGYME---RLLFLDLSSNNFSRDLPKHF--LTSCVS 444
           P L  L +S N   G IP      +  +     L  LDLS N    D       L    S
Sbjct: 51  PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109

Query: 445 LEFMNLSHNYFDGQIFPK--------YMNLAKLVFLFLNDNQFTGRLEVGLLNA----SS 492
           L+ + L++N    +               L KLV   L  N+  G     L  A      
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV---LGRNRLEGASCEALAKALRANRD 166

Query: 493 LYVLDVSNNMLSGQLPRWIGK----FSNLDVLLMSRNSFE----GDVSVQLSNLEVARIL 544
           L  L+++NN +     R + +      NL+VL ++ N         ++  L++L+   +L
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 545 DISENKL--YGPLEFSS----NHSSLRYLFPHNNSL----SGTIPNALLQSSQLTTLDLR 594
           ++ +N L   G    +S     + SL  L    N +    +  +   L +   L  LDLR
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286

Query: 595 DNEFSGNIAHLINED 609
            N+F    A L+ E 
Sbjct: 287 GNKFGEEGAQLLAES 301

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 68/294 (23%), Positives = 108/294 (36%), Gaps = 54/294 (18%)

Query: 174 LRNLEVLDLSGNRIT---GSLIMQGICDLKNLVELNINENE------FDGLLPQCLSNLT 224
           L  L+VL L GN +       +   +    +L EL ++ NE          L Q L+   
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 225 YLRVLDLSSNKLSGNLPLSVIANL--TSLEYLSLFDNHFQESFPLSVLA-----NHSRLE 277
            L+ LDLS N L  +    + + L  +SL+ L L +N   +   L +LA         LE
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-GLRLLAKGLKDLPPALE 140

Query: 278 VFQLSRLQVETEN-FPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDT 336
              L R ++E  +        +                       D + ++L++N + D 
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANR--------------------DLKELNLANNGIGDA 180

Query: 337 FPTWLLQ---NNTKLEIMFLFNNFLT--GNLQL---PNSKRNLPHLVISNNSF----IGK 384
               L +    N  LE++ L NN LT  G   L     S ++L  L + +N+        
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240

Query: 385 LPENFGLILPELVYLDMSQNSFE----GSIPPSMGYMERLLFLDLSSNNFSRDL 434
           L          L+ L +S N         +   +   E LL LDL  N F  + 
Sbjct: 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	844
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
PLN03150	623	hypothetical protein; Provisional	99.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.58
KOG4341	483	consensus F-box protein containing LRR [General fu	97.57
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.67
KOG4308	478	consensus LRR-containing protein [Function unknown	91.42
KOG4308	478	consensus LRR-containing protein [Function unknown	91.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.84
smart00370	26	LRR Leucine-rich repeats, outliers.	87.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.4
smart00370	26	LRR Leucine-rich repeats, outliers.	86.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.94
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.12
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.99

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.9e-71  Score=681.32  Aligned_cols=584  Identities=33%  Similarity=0.527  Sum_probs=396.0

Q ss_pred             cHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCC
Q 038149           12 LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMS   91 (844)
Q Consensus        12 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~   91 (844)
                      .++|++||++||+++.+    |.  +.+++|+.  +.+||.|.||+|+. .++|+.|+|+++.+                
T Consensus        27 ~~~~~~~l~~~~~~~~~----~~--~~~~~w~~--~~~~c~w~gv~c~~-~~~v~~L~L~~~~i----------------   81 (968)
T PLN00113         27 HAEELELLLSFKSSIND----PL--KYLSNWNS--SADVCLWQGITCNN-SSRVVSIDLSGKNI----------------   81 (968)
T ss_pred             CHHHHHHHHHHHHhCCC----Cc--ccCCCCCC--CCCCCcCcceecCC-CCcEEEEEecCCCc----------------
Confidence            57899999999999853    44  56899964  36899999999985 57899999887654                


Q ss_pred             CccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhc-CCCCCCEEECCCCCCCCCCcCccc
Q 038149           92 LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKG  170 (844)
Q Consensus        92 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~  170 (844)
                                        .+..+    ..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+         
T Consensus        82 ------------------~~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l---------  130 (968)
T PLN00113         82 ------------------SGKIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF---------  130 (968)
T ss_pred             ------------------cccCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc---------
Confidence                              22222    2344555555555555555443333222 444444444444444         


Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS  250 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~  250 (844)
                                       ++.+|.   +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+| ..+.++++
T Consensus       131 -----------------~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~  189 (968)
T PLN00113        131 -----------------TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTS  189 (968)
T ss_pred             -----------------ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcC
Confidence                             333321   234445555555555554555555555555555555555554555 44555555


Q ss_pred             CCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccC
Q 038149          251 LEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD  330 (844)
Q Consensus       251 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  330 (844)
                      |++|++++|.+.+.+|. .++++++                       |++|++++|.+.+.+|..++.+++|++|++++
T Consensus       190 L~~L~L~~n~l~~~~p~-~l~~l~~-----------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        190 LEFLTLASNQLVGQIPR-ELGQMKS-----------------------LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCeeeccCCCCcCcCCh-HHcCcCC-----------------------ccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            55555555544332221 1111111                       11112222222223333444444444444444


Q ss_pred             CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCC
Q 038149          331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSI  410 (844)
Q Consensus       331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~  410 (844)
                      |.+.+                                                .+|..+. .+++|++|++++|.+.+.+
T Consensus       246 n~l~~------------------------------------------------~~p~~l~-~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        246 NNLTG------------------------------------------------PIPSSLG-NLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             ceecc------------------------------------------------ccChhHh-CCCCCCEEECcCCeeeccC
Confidence            44433                                                3333333 2566777777777777777


Q ss_pred             CccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCC
Q 038149          411 PPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA  490 (844)
Q Consensus       411 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  490 (844)
                      |..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus       277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             chhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            7777777777777777777766666543 456666666666666666555555555555555555555555555555555


Q ss_pred             CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149          491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH  570 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  570 (844)
                      ++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+.                       .+++|+.|+++
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-----------------------~~~~L~~L~L~  412 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-----------------------ACRSLRRVRLQ  412 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-----------------------CCCCCCEEECc
Confidence            5555555555555555555555555555555555555544444444                       44555556666


Q ss_pred             CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149          571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI  650 (844)
Q Consensus       571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  650 (844)
                      +|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+
T Consensus       413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCcc
Confidence            666667778888888899999999999998888888889999999999999998888766 4588999999999999999


Q ss_pred             CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcc
Q 038149          651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG  730 (844)
Q Consensus       651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  730 (844)
                      |..+.+                                                ++.|+.|+|++|++.|.+|..++.++
T Consensus       492 ~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        492 PRKLGS------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             Chhhhh------------------------------------------------hhccCEEECcCCcceeeCChHHcCcc
Confidence            988766                                                45788999999999999999999999


Q ss_pred             ccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCC
Q 038149          731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRG  810 (844)
Q Consensus       731 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~g  810 (844)
                      +|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|.++...++.|
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~  603 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG  603 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcc
Q 038149          811 NPYLCGPA  818 (844)
Q Consensus       811 n~~lc~~~  818 (844)
                      ||++||++
T Consensus       604 n~~lc~~~  611 (968)
T PLN00113        604 NIDLCGGD  611 (968)
T ss_pred             CccccCCc
Confidence            99999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-58  Score=568.24  Aligned_cols=515  Identities=30%  Similarity=0.513  Sum_probs=418.5

Q ss_pred             CCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEE
Q 038149          201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ  280 (844)
Q Consensus       201 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  280 (844)
                      +++.|+|++|.+++.++..|..+++|++|++++|++.+.+|...+..+++|++|++++|.+.+.+|.   +.+       
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l-------  139 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSI-------  139 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---ccc-------
Confidence            4556666666666656666666666666666666666666644444666666666666666655442   112       


Q ss_pred             ccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccc
Q 038149          281 LSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG  360 (844)
Q Consensus       281 l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~  360 (844)
                                      .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+. +                
T Consensus       140 ----------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~----------------  186 (968)
T PLN00113        140 ----------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-N----------------  186 (968)
T ss_pred             ----------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-h----------------
Confidence                            2345555666666666677777777777777777777766666553 2                


Q ss_pred             cccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhh
Q 038149          361 NLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT  440 (844)
Q Consensus       361 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  440 (844)
                             +++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+ .
T Consensus       187 -------l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~  257 (968)
T PLN00113        187 -------LTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-G  257 (968)
T ss_pred             -------CcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-h
Confidence                   344555555555555566666653 7778888888888877788888888888888888888877777654 6


Q ss_pred             cCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEE
Q 038149          441 SCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVL  520 (844)
Q Consensus       441 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  520 (844)
                      .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            77888888888888887777788888888888888888888888888888888888888888888888888888888888


Q ss_pred             eCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC
Q 038149          521 LMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS  599 (844)
Q Consensus       521 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  599 (844)
                      ++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++.+.+|..+..+++|+.|++++|+++
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            888888888888888888888888888888888777766 6788999999999999999999999999999999999999


Q ss_pred             cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccc
Q 038149          600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAED  679 (844)
Q Consensus       600 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  679 (844)
                      +.+|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++                        
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------  473 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------  473 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------
Confidence            99999999999999999999999999999999999999999999999988887542                        


Q ss_pred             ccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEE
Q 038149          680 NRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESM  759 (844)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  759 (844)
                                               .++|+.||+++|+++|.+|..+..+++|+.|+|++|++++.+|..++++++|++|
T Consensus       474 -------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        474 -------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             -------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence                                     2468899999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcC
Q 038149          760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCG  816 (844)
Q Consensus       760 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~  816 (844)
                      +|++|+++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+....+.+|+..+.
T Consensus       529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            99999999999999999999999999999999999976 6677788888999987763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-42  Score=342.01  Aligned_cols=479  Identities=27%  Similarity=0.374  Sum_probs=310.4

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS  250 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~  250 (844)
                      .+.-.-|+.|++++|.+. .+. +.+.++..|.+|++.+|.++ ..|.+++.+..++.++.++|+++ .+| ..+..+.+
T Consensus        41 wW~qv~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~  115 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLIS  115 (565)
T ss_pred             hhhhcchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhh
Confidence            344455667777777765 333 34667777777777777776 45667777777777777777776 677 66677777


Q ss_pred             CCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccC
Q 038149          251 LEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD  330 (844)
Q Consensus       251 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  330 (844)
                      |+.|+.++|.+....+  .++.+..                       ++.++..+|+++ ..|..+.++.+|..+++.+
T Consensus       116 l~~l~~s~n~~~el~~--~i~~~~~-----------------------l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen  116 LVKLDCSSNELKELPD--SIGRLLD-----------------------LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             hhhhhccccceeecCc--hHHHHhh-----------------------hhhhhccccccc-cCchHHHHHHHHHHhhccc
Confidence            7777777766553221  1222222                       222222333333 2444444455555555555


Q ss_pred             CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCC
Q 038149          331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSI  410 (844)
Q Consensus       331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~  410 (844)
                      |++....|                                                 .... +..|++||...|-++ .+
T Consensus       170 n~l~~l~~-------------------------------------------------~~i~-m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  170 NKLKALPE-------------------------------------------------NHIA-MKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             cchhhCCH-------------------------------------------------HHHH-HHHHHhcccchhhhh-cC
Confidence            55442222                                                 2211 455555555555554 55


Q ss_pred             CccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCC
Q 038149          411 PPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA  490 (844)
Q Consensus       411 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  490 (844)
                      |+.++.+.+|..|++.+|++. .+|+  |.+|..|++++++.|++.-........++++..||+.+|++. ..|..+..+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            556666666666666666663 4553  355666666666666655333233345666666666666666 556666666


Q ss_pred             CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCC--CCCCEEe-------cCCCc---------Cc
Q 038149          491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL--EVARILD-------ISENK---------LY  552 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l--~~L~~L~-------ls~n~---------l~  552 (844)
                      .+|++||+|+|.++ .+|..++++ .|+.|.+.+|.+...-...+.+-  .-|++|.       ++.-.         ..
T Consensus       275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~  352 (565)
T KOG0472|consen  275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS  352 (565)
T ss_pred             hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence            77777777777776 456667777 67777777776542111101000  0011110       11000         01


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCC---CCEEECCCCcCCcccchhhhCCCCCCE-EEccCCcccccCCc
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQ---LTTLDLRDNEFSGNIAHLINEDSNLRA-LLLRGNNLQGNIPE  628 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~~~~~l~~l~~L~~-L~L~~N~l~~~~p~  628 (844)
                      +..|........+.|++++-+++ .+|........   .+.++++.|++. .+|..+..+..+.+ +.+++|+++ .+|.
T Consensus       353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~  429 (565)
T KOG0472|consen  353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPL  429 (565)
T ss_pred             Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchH
Confidence            11222225567888999998888 67766655544   789999999998 67877777666664 455555555 8899


Q ss_pred             ccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccc
Q 038149          629 PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM  708 (844)
Q Consensus       629 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  708 (844)
                      .++.+++|..|+|++|.+. .+|..++.                                                +..|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~------------------------------------------------lv~L  460 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLN-DLPEEMGS------------------------------------------------LVRL  460 (565)
T ss_pred             HHHhhhcceeeecccchhh-hcchhhhh------------------------------------------------hhhh
Confidence            9999999999999999886 78887776                                                3468


Q ss_pred             eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149          709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN  788 (844)
Q Consensus       709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  788 (844)
                      +.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence            89999999998 89998888888888888889998767777999999999999999998 89999999999999999999


Q ss_pred             ccc
Q 038149          789 NLS  791 (844)
Q Consensus       789 ~l~  791 (844)
                      ++.
T Consensus       539 pfr  541 (565)
T KOG0472|consen  539 PFR  541 (565)
T ss_pred             ccC
Confidence            998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-37  Score=319.74  Aligned_cols=366  Identities=22%  Similarity=0.254  Sum_probs=237.9

Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      +.||+++|.+...-+..|.++++|+.+++.+|.++.  +| ....-..+|+.|+|.+|.|+ ++..+.+..++.|+.|||
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP-~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR--IP-RFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhh--cc-cccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            446666666666666666667777777776666644  44 22233344666777776666 555556666666777777


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE  287 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~  287 (844)
                      +.|.|+.+....|.+-.++++|+|++|+|+ .+..+.|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            777666555555665566677777777766 555566666666777777777665 455556666666666666666665


Q ss_pred             CC-CCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149          288 TE-NFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN  366 (844)
Q Consensus       288 ~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~  366 (844)
                      .. ...+-.+.+|+.|.+..|.+.......|..+.++++|+|+.|++...-..|++ +++.|+.|++++|.+.       
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~-------  306 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQ-------  306 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhh-------
Confidence            44 33444555667777777777766666777777777777777777655555555 4444443333333333       


Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE  446 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  446 (844)
                                      ..-++.+. .+++|++|+|++|+++...+..|..+..|++|.|++|.+. .+.+..|..+++|+
T Consensus       307 ----------------rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~  368 (873)
T KOG4194|consen  307 ----------------RIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLH  368 (873)
T ss_pred             ----------------eeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhh
Confidence                            22222221 2677888888888887766777777778888888888775 56666667777788


Q ss_pred             EEeCcCcccCCcCC---ccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          447 FMNLSHNYFDGQIF---PKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       447 ~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      .|||++|.++..+-   ..|.++++|+.|.+.+|++..+...+|..+.+|+.|||.+|.|..+-|.+|..+ .|++|.+.
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            88888877765543   346667777777777777776666677777777777777777777777777776 77777665


Q ss_pred             CCc
Q 038149          524 RNS  526 (844)
Q Consensus       524 ~n~  526 (844)
                      .-.
T Consensus       448 Sss  450 (873)
T KOG4194|consen  448 SSS  450 (873)
T ss_pred             ccc
Confidence            443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-39  Score=324.07  Aligned_cols=450  Identities=26%  Similarity=0.366  Sum_probs=260.1

Q ss_pred             CCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEc
Q 038149          274 SRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL  353 (844)
Q Consensus       274 ~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  353 (844)
                      ..++.+.++.|.++...........+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|..+. .+.++     
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l-----  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISL-----  116 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhh-----
Confidence            3444555555554444433333444555555555554 34444555555555555555554 3444443 44444     


Q ss_pred             CCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCC
Q 038149          354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRD  433 (844)
Q Consensus       354 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  433 (844)
                                        ..++.+.|.+. ++|+.++. +-.++.++..+|+++ ..|+.++.+.+|..+++.+|++. .
T Consensus       117 ------------------~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~  174 (565)
T KOG0472|consen  117 ------------------VKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-A  174 (565)
T ss_pred             ------------------hhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-h
Confidence                              44444444444 33444433 444555555555554 44445555555555555555553 3


Q ss_pred             CChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhh-
Q 038149          434 LPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIG-  512 (844)
Q Consensus       434 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~-  512 (844)
                      .|+.... ++.|++|+...|.++ .+|+.++.+.+|..|++.+|++. .+| .|..++.|++|.++.|++. .+|.... 
T Consensus       175 l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~  249 (565)
T KOG0472|consen  175 LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK  249 (565)
T ss_pred             CCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence            3333322 455555555555443 34444555555555555555554 333 3445555555555555554 3443333 


Q ss_pred             cCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCc------------
Q 038149          513 KFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPN------------  580 (844)
Q Consensus       513 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~------------  580 (844)
                      +++++.+||+.+|+++ +.|..++.+++|++||+|+|.+++..+...++ .|+.|-+.+|.+. .+-.            
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLK  326 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHH
Confidence            4555555555555554 44445555555555555555554433333333 4555555555442 1111            


Q ss_pred             ------------------------------cccCCCCCCEEECCCCcCCcccchhhhCCCC---CCEEEccCCcccccCC
Q 038149          581 ------------------------------ALLQSSQLTTLDLRDNEFSGNIAHLINEDSN---LRALLLRGNNLQGNIP  627 (844)
Q Consensus       581 ------------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~L~~N~l~~~~p  627 (844)
                                                    ......+.+.|++++-+++ .+|+.......   ....++++|++. ++|
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP  404 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP  404 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence                                          1122334555666665555 33333222222   455566666665 555


Q ss_pred             cccCCCCCCCE-EEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149          628 EPLCHLRKLAI-VDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK  706 (844)
Q Consensus       628 ~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  706 (844)
                      ..+..+..+++ +++++|.+ +.+|..+..                                                ++
T Consensus       405 k~L~~lkelvT~l~lsnn~i-sfv~~~l~~------------------------------------------------l~  435 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKI-SFVPLELSQ------------------------------------------------LQ  435 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCcc-ccchHHHHh------------------------------------------------hh
Confidence            55555544443 23333333 244444333                                                66


Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      .|+.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..||.+-.++|++...-|+.+.+|.+|.+||+.
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            8899999999998 89999999999999999999999 899999999999999888999997767779999999999999


Q ss_pred             CCcccccCCCCCcCCCcCccccCCCCCC
Q 038149          787 YNNLSGTVPNKGQFANFDESNYRGNPYL  814 (844)
Q Consensus       787 ~N~l~g~ip~~~~~~~~~~~~~~gn~~l  814 (844)
                      +|.+...+|.-|...++..+.+.|||+-
T Consensus       514 nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  514 NNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCchhhCChhhccccceeEEEecCCccC
Confidence            9999987777799999999999999975

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-37  Score=317.29  Aligned_cols=362  Identities=25%  Similarity=0.249  Sum_probs=234.4

Q ss_pred             EEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCC
Q 038149          179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD  258 (844)
Q Consensus       179 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~  258 (844)
                      +||+++|++. .+....|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ .+..+.++.++.|+.|||+.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            4555555555 444444555555555555555555 34443334444555555555555 44445555555555555555


Q ss_pred             CcccCccChhhhcCCCCCCEEEccCccccCCCCCCCC-CCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccC
Q 038149          259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLP-KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF  337 (844)
Q Consensus       259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  337 (844)
                      |.++                         ....+.++ ..++++|+|++|.|+......|..+.+|..|.|+.|+++ .+
T Consensus       159 N~is-------------------------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL  212 (873)
T KOG4194|consen  159 NLIS-------------------------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL  212 (873)
T ss_pred             chhh-------------------------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence            5544                         33222222 245666666667666666666666666666666666665 33


Q ss_pred             chhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCcccccc
Q 038149          338 PTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM  417 (844)
Q Consensus       338 p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  417 (844)
                      |.                                                ..+..+++|+.|+|..|+|.-.---.|.++
T Consensus       213 p~------------------------------------------------r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  213 PQ------------------------------------------------RSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CH------------------------------------------------HHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            33                                                333335555566666665542223456666


Q ss_pred             ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEE
Q 038149          418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD  497 (844)
Q Consensus       418 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  497 (844)
                      ++|+.|.+..|++. .+....|..+.++++|+|+.|++...--.++.++++|+.|++++|.|..+-+.++..+++|++|+
T Consensus       245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence            67777777777665 45555556677777777777777666666677777777777777777777777777778888888


Q ss_pred             ccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC----CCCCCcEEECCCCc
Q 038149          498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS----NHSSLRYLFPHNNS  573 (844)
Q Consensus       498 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~----~~~~L~~L~l~~n~  573 (844)
                      |++|+++..-++.|..+..|++|+|++|++...-...|..+++|++|||++|.++..+....    .+++|+.|.+.+|+
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence            88888887777777888888888888888776666677778888888888888876554432    57777777888888


Q ss_pred             cccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccC
Q 038149          574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRG  619 (844)
Q Consensus       574 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  619 (844)
                      +....-.+|..+..|++|||.+|.|..+.|.+|..+ .|+.|.+..
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            776666677788888888888888877777777776 777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=329.58  Aligned_cols=419  Identities=29%  Similarity=0.353  Sum_probs=262.1

Q ss_pred             CCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEE
Q 038149          127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN  206 (844)
Q Consensus       127 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  206 (844)
                      ++.|+++.|.+...+-+.+.+.-+|+.|++++|++..  +| ..+..+.+|+.|+++.|.|. .+| ....++.+|+++.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp-~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FP-IQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN   97 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccccc--CC-chhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence            6777777776655444555555557777777777644  44 45667777888888888776 555 3467778888888


Q ss_pred             ccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149          207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV  286 (844)
Q Consensus       207 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i  286 (844)
                      |..|.+. ..|..+..+++|++|+++.|.+. .+| ..+..++.++.+..++|.....     ++.              
T Consensus        98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~-----lg~--------------  155 (1081)
T KOG0618|consen   98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR-----LGQ--------------  155 (1081)
T ss_pred             eccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh-----hcc--------------
Confidence            8877776 56777888888888888888876 777 6777777777777777722111     111              


Q ss_pred             cCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149          287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN  366 (844)
Q Consensus       287 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~  366 (844)
                                ..++.+++..|.+.+.++.....++.  .|||.+|.+. ...   ..++.+|+.+....|++..      
T Consensus       156 ----------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~------  213 (1081)
T KOG0618|consen  156 ----------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSE------  213 (1081)
T ss_pred             ----------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccce------
Confidence                      12455666666666666666666665  6888888765 111   1234444444443333321      


Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE  446 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  446 (844)
                             +.+               .-++++.|+.++|.++...+  ...-.+|+++++++|+++ .+| ++...|.+|+
T Consensus       214 -------l~~---------------~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle  267 (1081)
T KOG0618|consen  214 -------LEI---------------SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLP-EWIGACANLE  267 (1081)
T ss_pred             -------EEe---------------cCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cch-HHHHhcccce
Confidence                   111               13667777777777762222  223356788888888886 566 5557777788


Q ss_pred             EEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149          447 FMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS  526 (844)
Q Consensus       447 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  526 (844)
                      .++..+|++. .+|..+...++|+.|.+.+|.+. .+|.....+++|++|+|..|++. ..|..+-              
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l--------------  330 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFL--------------  330 (1081)
T ss_pred             EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHH--------------
Confidence            7777777773 45556666667777777777766 44555555666777777776665 3333211              


Q ss_pred             ccccCCccccCCCC-CCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccch
Q 038149          527 FEGDVSVQLSNLEV-ARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAH  604 (844)
Q Consensus       527 l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  604 (844)
                               ..... |+.|+.+.|++........ ..+.|+.|++.+|.++...-..+.+...|+.|+|++|++......
T Consensus       331 ---------~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  331 ---------AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ---------hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence                     11111 3344444444432221111 566777888888888777767777778888888888877744445


Q ss_pred             hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149          605 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       605 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      .+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++.
T Consensus       402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            5666777777777777776 55666666666666665555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=322.89  Aligned_cols=482  Identities=27%  Similarity=0.381  Sum_probs=337.6

Q ss_pred             EEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccC
Q 038149          204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR  283 (844)
Q Consensus       204 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  283 (844)
                      ++|++...+. .+|..+-.-..++.|+++.|.+. ..|.+.+.+.-+|+.|++++|.+. .+|. .+..+..|+.|.++.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSR   77 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccch
Confidence            3566777666 56666655555888888888877 666566666667888999888875 4553 466777888888888


Q ss_pred             ccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCccccccc
Q 038149          284 LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ  363 (844)
Q Consensus       284 ~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~  363 (844)
                      |.+...+.......+|+++.|..|.+. ..|..+..+.+|++||++.|++. .+|..+. .++.++.+..++|       
T Consensus        78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N-------  147 (1081)
T KOG0618|consen   78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNN-------  147 (1081)
T ss_pred             hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcc-------
Confidence            888777777777777888888877765 57777888888888888888775 5555444 4444444444444       


Q ss_pred             CCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCC
Q 038149          364 LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV  443 (844)
Q Consensus       364 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  443 (844)
                                      ..+..++.      ..++.+++..|.+.+.++..+..++.  .|+|++|.+. .+.   ...++
T Consensus       148 ----------------~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~  199 (1081)
T KOG0618|consen  148 ----------------EKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLA  199 (1081)
T ss_pred             ----------------hhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhcc
Confidence                            11111111      12566666666666666666665555  5777777764 222   35667


Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      +|+.+....|++....    ..-++|+.|+.++|.++...+.  ....+|+++++++|+++ .+|.|++.+.+|+.+...
T Consensus       200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN  272 (1081)
T ss_pred             chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence            7777777777765432    2345777777777777733222  22467888888888887 456888888888888888


Q ss_pred             CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccc-cCCC-CCCEEECCCCcCCcc
Q 038149          524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL-LQSS-QLTTLDLRDNEFSGN  601 (844)
Q Consensus       524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~~~  601 (844)
                      +|+++ .+|..+....+|+.|.+..|.+.-..+.....+.|+.|+|..|++. .+|+.+ .-.. +|+.|+.+.|++...
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc
Confidence            88884 6777777778888888888888765555556788888888888887 444433 2232 367777777777643


Q ss_pred             cchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCch-hhccccccccCcccccccccCCCcccc
Q 038149          602 IAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC-FTNISLWMEKGNYYNSTLSLALPAEDN  680 (844)
Q Consensus       602 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~  680 (844)
                      ....=..++.|+.|++.+|.++...-..+.+...|++|+|++|++. .+|+. +.+                        
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------  405 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------  405 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc------------------------
Confidence            3222234567888899999888776667888888999999999886 55553 333                        


Q ss_pred             cccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149          681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD  760 (844)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  760 (844)
                                              +..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|
T Consensus       406 ------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  406 ------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             ------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence                                    456788899999998 88888889999999999889888 777 788899999999


Q ss_pred             CCCCcccccC-CccccCCCCCCEEEccCCc
Q 038149          761 LSYNKLNGQI-PPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       761 Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~  789 (844)
                      +|.|+|+-.. |.... -+.|++||+++|.
T Consensus       459 lS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            9999888543 33322 2788999999887

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.3e-34  Score=298.27  Aligned_cols=368  Identities=23%  Similarity=0.322  Sum_probs=310.2

Q ss_pred             CCCCEEEccCCccc-ccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcE
Q 038149          369 RNLPHLVISNNSFI-GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEF  447 (844)
Q Consensus       369 ~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  447 (844)
                      +-.+-.++++|.++ +.+|..... +++++.|.|...++. .+|+.++.+.+|+.|.+++|++. .+-.. ++.++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence            34556788888887 467877765 889999999999987 78999999999999999999986 34443 367899999


Q ss_pred             EeCcCcccCCc-CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149          448 MNLSHNYFDGQ-IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS  526 (844)
Q Consensus       448 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  526 (844)
                      +.+.+|++... +|..+..+..|+.|+|++|++. ..|..+...+++-+|+||+|+|..+.-..|-+++.|-.|++++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            99999988643 6788889999999999999998 678888889999999999999985444556788999999999999


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccc-cccCccccCCCCCCEEECCCCcCCcccch
Q 038149          527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLS-GTIPNALLQSSQLTTLDLRDNEFSGNIAH  604 (844)
Q Consensus       527 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  604 (844)
                      +. .+|+.+..+..|++|++++|++...--... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            87 677788999999999999998854222222 6778888999887643 358899999999999999999998 7899


Q ss_pred             hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccc
Q 038149          605 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESS  684 (844)
Q Consensus       605 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (844)
                      ++-.+.+|+.|+|++|+|+ .+........+|+.|++|+|+++ .+|+++..                            
T Consensus       240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK----------------------------  289 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK----------------------------  289 (1255)
T ss_pred             HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence            9999999999999999998 66667777889999999999998 88888876                            


Q ss_pred             cceeeeeeeccccccccccccccceEEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCC
Q 038149          685 QRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSY  763 (844)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  763 (844)
                                          ++.|+.|++.+|+++ .-||..||.|.+|+++..++|.+. ..|+.+..+..|+.|.|++
T Consensus       290 --------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  290 --------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             --------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence                                456788888889876 368999999999999999999998 8999999999999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCC
Q 038149          764 NKLNGQIPPELGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       764 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      |++. .+|+.+.-|+.|+.||+..|+=---+|
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            9998 789999999999999999997443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6e-34  Score=297.18  Aligned_cols=369  Identities=26%  Similarity=0.345  Sum_probs=322.0

Q ss_pred             CCCccEEEccCCcCC-CCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCE
Q 038149          393 LPELVYLDMSQNSFE-GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVF  471 (844)
Q Consensus       393 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  471 (844)
                      +|-.+-+|+++|.++ +..|.....|++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence            566788999999998 578999999999999999999995 899886 789999999999999974 4577889999999


Q ss_pred             ecCCCCcCcc-cccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCc
Q 038149          472 LFLNDNQFTG-RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK  550 (844)
Q Consensus       472 L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~  550 (844)
                      +.+.+|++.. -+|..+..+..|+.||||+|++. ..|..+..-+++-+|++++|++..+....+.+++.|-.||+|+|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9999999864 37888889999999999999999 789999999999999999999986666678899999999999999


Q ss_pred             CcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcc
Q 038149          551 LYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEP  629 (844)
Q Consensus       551 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~  629 (844)
                      +....|....+..|+.|.|++|.+.-.--..+-.+++|++|++++.+=+ ..+|..+..+.+|..++++.|.+. .+|+.
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            9877777668999999999999986544445556788999999987644 568889999999999999999998 88999


Q ss_pred             cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149          630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT  709 (844)
Q Consensus       630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  709 (844)
                      +.++++|+.|+||+|+|+. +..+.+.                                                -.+|+
T Consensus       241 ly~l~~LrrLNLS~N~ite-L~~~~~~------------------------------------------------W~~lE  271 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITE-LNMTEGE------------------------------------------------WENLE  271 (1255)
T ss_pred             HhhhhhhheeccCcCceee-eeccHHH------------------------------------------------Hhhhh
Confidence            9999999999999999972 2111111                                                23678


Q ss_pred             EEEeecCcccCCCCchhhhccccCeEeccCccccc-ccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149          710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG-SIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN  788 (844)
Q Consensus       710 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  788 (844)
                      +|+||+|+++ .+|..++.|+.|+.|++.+|+++- -||+.++.|.+|+.+..++|.+. .+|+++..+..|+.|+|++|
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence            9999999999 999999999999999999999974 49999999999999999999998 89999999999999999999


Q ss_pred             cccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149          789 NLSGTVPNK-GQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       789 ~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      ++.. +|+. ..+..++.+.+..||.|--||
T Consensus       350 rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence            9984 6665 566678888899999988665

>PLN03210 Resistant to P

Probab=99.91  E-value=7.8e-23  Score=252.28  Aligned_cols=57  Identities=21%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCC
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN  764 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  764 (844)
                      +++.|+|++|.++ .+|.++..+++|++|+|++|+--..+|..+..+++|+.+++++|
T Consensus       847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            4555666666665 55666666666666666653222245555566666666666655

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.6e-22  Score=249.60  Aligned_cols=335  Identities=18%  Similarity=0.215  Sum_probs=191.0

Q ss_pred             CCCCccEEEccCCcC------CCCCCccccccc-cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCcccc
Q 038149          392 ILPELVYLDMSQNSF------EGSIPPSMGYME-RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM  464 (844)
Q Consensus       392 ~l~~L~~L~Ls~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  464 (844)
                      .+++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|..+  .+.+|+.|++.+|++.. ++..+.
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~  631 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVH  631 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cccccc
Confidence            355555555544321      123444444432 4666666666553 555543  34566666666666542 344455


Q ss_pred             CCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149          465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARIL  544 (844)
Q Consensus       465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L  544 (844)
                      .+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L  709 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL  709 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence            566666666665544334443 5556666666666665545566666666666666666655444555443 55666666


Q ss_pred             ecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcC-------CcccchhhhCCCCCCEEEc
Q 038149          545 DISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF-------SGNIAHLINEDSNLRALLL  617 (844)
Q Consensus       545 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~~~~~~~l~~l~~L~~L~L  617 (844)
                      ++++|...+.+|..  ..+|+.|++++|.+. .+|..+ .+++|+.|++.++..       ....+......++|+.|+|
T Consensus       710 ~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        710 NLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             eCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            66666544444332  345666666666655 455443 355666666655321       1111222233456777777


Q ss_pred             cCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccc
Q 038149          618 RGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY  697 (844)
Q Consensus       618 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (844)
                      ++|...+.+|.+++++++|+.|++++|...+.+|..+ +                                         
T Consensus       786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-----------------------------------------  823 (1153)
T PLN03210        786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-----------------------------------------  823 (1153)
T ss_pred             CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------------
Confidence            7776666677777777777777777765444444432 1                                         


Q ss_pred             ccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCC
Q 038149          698 ESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL  777 (844)
Q Consensus       698 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  777 (844)
                             +++|+.|+|++|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+--..+|..+..+
T Consensus       824 -------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        824 -------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             -------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence                   345667777776554455543   246677777777776 567777777777777777633223466666777


Q ss_pred             CCCCEEEccCCc
Q 038149          778 SFLAIFNVSYNN  789 (844)
Q Consensus       778 ~~L~~L~ls~N~  789 (844)
                      ++|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            777777777664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=6.4e-26  Score=226.36  Aligned_cols=276  Identities=20%  Similarity=0.163  Sum_probs=170.8

Q ss_pred             CCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccC-CcCCCCCChhhhhcCCCCcEE
Q 038149          370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSS-NNFSRDLPKHFLTSCVSLEFM  448 (844)
Q Consensus       370 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L  448 (844)
                      .-..++|..|+++ .+|...+..+++|+.|||++|.|+.+-|.+|.++.+|..|-+.+ |+|+ .+|...|.++.+++.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3445555556555 55555555566666666666666655566666666655555444 5554 5666666666666666


Q ss_pred             eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccC------------cCCChhhhcCCC
Q 038149          449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS------------GQLPRWIGKFSN  516 (844)
Q Consensus       449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~------------~~~p~~l~~l~~  516 (844)
                      .+.-|++.-.....|..+++|..|.+.+|.+..+-...|..+.+++.+.+..|.+.            ...|..++....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            66666665555555556666666666666555333334555555555555555421            111222222222


Q ss_pred             CCEEeCCCCcccccCCccccC-CCCCCEEecCCCcCcccCCCC-C-CCCCCcEEECCCCccccccCccccCCCCCCEEEC
Q 038149          517 LDVLLMSRNSFEGDVSVQLSN-LEVARILDISENKLYGPLEFS-S-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL  593 (844)
Q Consensus       517 L~~L~ls~n~l~~~~~~~l~~-l~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  593 (844)
                      ..-..+.+.++..+-+..|.. +..+..--.+.+...+..|.. + .+++|+.|++++|+++++-+.+|.....+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            222233333332222222211 111111112223233333332 2 7889999999999999999999999999999999


Q ss_pred             CCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149          594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       594 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      ..|++...-..+|.++..|+.|+|.+|+|+..-|.+|..+.+|..|+|-.|++.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999998777788999999999999999999889999999999999999998875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8e-25  Score=218.58  Aligned_cols=394  Identities=20%  Similarity=0.213  Sum_probs=267.7

Q ss_pred             cCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcC-cccCCcCCcc
Q 038149          384 KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH-NYFDGQIFPK  462 (844)
Q Consensus       384 ~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~  462 (844)
                      ++|..+   .+.-+.++|..|+|+...+.+|..+++|+.|||++|.|+ .|.++.|.+++++..|-+.+ |+|+......
T Consensus        60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            667665   457889999999999777789999999999999999997 56666678899888877766 8999888888


Q ss_pred             ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccc------------c
Q 038149          463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG------------D  530 (844)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~------------~  530 (844)
                      |.++..|+.|.+.-|++.......|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+..            .
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            9999999999999999998888999999999999999999985444588999999999999988432            2


Q ss_pred             CCccccCCCCCCEEecCCCcCcccCCCCCCC--CCCcEEECCCCccccccC-ccccCCCCCCEEECCCCcCCcccchhhh
Q 038149          531 VSVQLSNLEVARILDISENKLYGPLEFSSNH--SSLRYLFPHNNSLSGTIP-NALLQSSQLTTLDLRDNEFSGNIAHLIN  607 (844)
Q Consensus       531 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~  607 (844)
                      .|..++......-..+.+.++....+..+.+  ..+..=..+.+...+..| ..|..+++|++|+|++|+++++-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence            2333444444444444444443333332211  123222233443444444 4688999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccc---ccCcccccccccCCCcccccc--
Q 038149          608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM---EKGNYYNSTLSLALPAEDNRE--  682 (844)
Q Consensus       608 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--  682 (844)
                      ++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..+.   ...+.++....+.+-..+.+.  
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence            999999999999999877777899999999999999999999999887665432   222332222111111110000  


Q ss_pred             --------cccceeeeeeecccccccccc---------------ccccce-EEEeecCcccCCCCchhhhccccCeEecc
Q 038149          683 --------SSQRVEVKFMAKNRYESYKGD---------------VLKYMT-GLDLSSNELTGDIPSEIGYLGEIHALNLS  738 (844)
Q Consensus       683 --------~~~~~~~~~~~~~~~~~~~~~---------------~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  738 (844)
                              ++..+...-++...+..+..+               ..+-+. ...-|+..+. .+|..+.  ..-..|++.
T Consensus       376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~  452 (498)
T KOG4237|consen  376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLD  452 (498)
T ss_pred             CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcc
Confidence                    000111111111111111100               011111 1223333333 4443332  234567888


Q ss_pred             CcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149          739 NNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN  788 (844)
Q Consensus       739 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  788 (844)
                      +|.++ .+|.+  .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       453 gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  453 GNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            88887 67776  66777 7888888887666677788888888888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=6e-22  Score=226.04  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149          395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL  474 (844)
Q Consensus       395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (844)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++.. |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            4556777777777 5666554  36777777777775 4553    245666666666666532 21   1234455555


Q ss_pred             CCCcCc
Q 038149          475 NDNQFT  480 (844)
Q Consensus       475 ~~n~l~  480 (844)
                      ++|.+.
T Consensus       270 s~N~L~  275 (788)
T PRK15387        270 FSNPLT  275 (788)
T ss_pred             cCCchh
Confidence            555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.2e-21  Score=221.40  Aligned_cols=265  Identities=27%  Similarity=0.334  Sum_probs=137.3

Q ss_pred             CCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeC
Q 038149          371 LPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL  450 (844)
Q Consensus       371 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  450 (844)
                      -..|+++.+.++ .+|..+.   ++|+.|++.+|+++ .+|..   +++|++|++++|+++ .+|.    ..++|+.|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceeec
Confidence            445666666665 5665542   35666777777666 34432   356677777777665 4553    2356666777


Q ss_pred             cCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc
Q 038149          451 SHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD  530 (844)
Q Consensus       451 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  530 (844)
                      ++|.+... |..   .++|+.|++++|+++. +|..   +++|+.|++++|++++ +|..   ..+|+.|+++       
T Consensus       270 s~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls-------  330 (788)
T PRK15387        270 FSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAY-------  330 (788)
T ss_pred             cCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccc-------
Confidence            76666532 211   2345555555555542 2221   2345555555554442 2221   1123333333       


Q ss_pred             CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCC
Q 038149          531 VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDS  610 (844)
Q Consensus       531 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  610 (844)
                                                              +|+++ .+|..   ..+|+.|+|++|++++ +|..   ..
T Consensus       331 ----------------------------------------~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~  362 (788)
T PRK15387        331 ----------------------------------------NNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PS  362 (788)
T ss_pred             ----------------------------------------cCccc-ccccc---ccccceEecCCCccCC-CCCC---Cc
Confidence                                                    33333 12221   1234555555555542 2321   23


Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeee
Q 038149          611 NLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVK  690 (844)
Q Consensus       611 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (844)
                      +|+.|++++|+++ .+|...   .+|+.|++++|+|++ +|..                                     
T Consensus       363 ~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~-LP~l-------------------------------------  400 (788)
T PRK15387        363 ELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS-LPVL-------------------------------------  400 (788)
T ss_pred             ccceehhhccccc-cCcccc---cccceEEecCCcccC-CCCc-------------------------------------
Confidence            4555555555555 244322   345666666666652 3321                                     


Q ss_pred             eeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccC
Q 038149          691 FMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI  770 (844)
Q Consensus       691 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  770 (844)
                                    ...|+.|++++|+++ .+|...   ..|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+
T Consensus       401 --------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        401 --------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             --------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence                          123556666666666 355432   34566777777776 56766777777777777777777666


Q ss_pred             CccccC
Q 038149          771 PPELGE  776 (844)
Q Consensus       771 p~~l~~  776 (844)
                      |..+..
T Consensus       462 ~~~L~~  467 (788)
T PRK15387        462 LQALRE  467 (788)
T ss_pred             HHHHHH
Confidence            665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=8.6e-20  Score=210.14  Aligned_cols=119  Identities=24%  Similarity=0.275  Sum_probs=67.2

Q ss_pred             CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149          394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF  473 (844)
Q Consensus       394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (844)
                      .+...|++++++++ .+|..+.  +.|+.|++++|+++ .+|..++   ++|+.|++++|+++. +|..+  .+.|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence            45678888888887 4665543  46888888888886 5776543   467777777777663 33322  13455555


Q ss_pred             CCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149          474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  528 (844)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5555555 3343331  34555555555554 2343321  24444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.4e-19  Score=208.28  Aligned_cols=182  Identities=23%  Similarity=0.333  Sum_probs=106.7

Q ss_pred             CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeC
Q 038149          443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLM  522 (844)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  522 (844)
                      .+.+.|++++++++. +|..+  .+.|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  .+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            346677888777764 34333  246777888888777 3454442  57778888887777 4565443  36777777


Q ss_pred             CCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149          523 SRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI  602 (844)
Q Consensus       523 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  602 (844)
                      ++|.+. .+|..+.  .+|+.|++++|++.. +|... ..+|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL-PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc-CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence            777776 4555443  356777777776653 33322 235666666666665 3443332  345666666666653 3


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      |..+  .++|++|++++|.+++ +|..+.  ++|+.|++++|+|+
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            3322  2456666666666653 444442  45666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=4.1e-19  Score=190.97  Aligned_cols=67  Identities=28%  Similarity=0.464  Sum_probs=33.6

Q ss_pred             cccCCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccc
Q 038149          581 ALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       581 ~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|+++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            444455566666666665531    222333444555555555555422    2233444555555666555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.8e-19  Score=192.32  Aligned_cols=280  Identities=24%  Similarity=0.224  Sum_probs=162.8

Q ss_pred             EEeCcCcccCC-cCCccccCCCCcCEecCCCCcCccc----ccccccCCCCCcEEEccCcccCc------CCChhhhcCC
Q 038149          447 FMNLSHNYFDG-QIFPKYMNLAKLVFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLSG------QLPRWIGKFS  515 (844)
Q Consensus       447 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~------~~p~~l~~l~  515 (844)
                      .|+|..+.+++ .....+..+..|+.++++++.++..    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666653 2333445556677777777776432    33344455566666666665542      1223344455


Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc----ccCccccCC-CCCCE
Q 038149          516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG----TIPNALLQS-SQLTT  590 (844)
Q Consensus       516 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~l~~l-~~L~~  590 (844)
                      +|+.|++++|.+.+..+..+..+..                   . ++|+.|++++|++++    .+...+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence            5555555555554333333322222                   1 224444444444441    233345555 77888


Q ss_pred             EECCCCcCCcc----cchhhhCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149          591 LDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME  662 (844)
Q Consensus       591 L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~  662 (844)
                      |++++|.+++.    ++..+..++.|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+...-    
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~----  217 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL----  217 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence            88888888732    344566677888888888888742    334455667888888888887643332222100    


Q ss_pred             cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhh-----ccccCeEec
Q 038149          663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY-----LGEIHALNL  737 (844)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~L  737 (844)
                                                              ..+++|++|++++|.+++.....+..     .+.|+.|++
T Consensus       218 ----------------------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         218 ----------------------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             ----------------------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence                                                    11456788888888877533333332     267888888


Q ss_pred             cCcccc----cccCcccccccCCCEEeCCCCccccc----CCccccCC-CCCCEEEccCCcc
Q 038149          738 SNNFLS----GSIPRSFSNLKMTESMDLSYNKLNGQ----IPPELGEL-SFLAIFNVSYNNL  790 (844)
Q Consensus       738 s~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l  790 (844)
                      ++|.++    ..++..+..+++|+.+|+++|.++..    +...+... +.|+.+++.+|++
T Consensus       258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            888776    23444556667788888888888744    44444444 6677777777753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=7.1e-20  Score=162.40  Aligned_cols=187  Identities=25%  Similarity=0.449  Sum_probs=154.8

Q ss_pred             CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149          555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR  634 (844)
Q Consensus       555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  634 (844)
                      ++..+.+.....|.+++|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            344446667777888888888 77888999999999999999998 67888999999999999999998 8899999999


Q ss_pred             CCCEEEcCCCcccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEe
Q 038149          635 KLAIVDISYNTLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDL  713 (844)
Q Consensus       635 ~L~~L~Ls~N~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  713 (844)
                      .|++|||++|++.. .+|..|.-                                                ++.|+.|+|
T Consensus       103 ~levldltynnl~e~~lpgnff~------------------------------------------------m~tlralyl  134 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFY------------------------------------------------MTTLRALYL  134 (264)
T ss_pred             hhhhhhccccccccccCCcchhH------------------------------------------------HHHHHHHHh
Confidence            99999999999874 45655543                                                346677899


Q ss_pred             ecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCC---CEEEccCCcc
Q 038149          714 SSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL---AIFNVSYNNL  790 (844)
Q Consensus       714 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L---~~L~ls~N~l  790 (844)
                      +.|.|. .+|.++++++.|+.|.+..|.+- .+|..++.+++|+.|.+.+|+++ .+|.+++.+.-.   +.+.+.+|+.
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence            999998 88999999999999999999988 78999999999999999999998 788888776533   4566777777


Q ss_pred             cccCC
Q 038149          791 SGTVP  795 (844)
Q Consensus       791 ~g~ip  795 (844)
                      ..+|-
T Consensus       212 v~pIa  216 (264)
T KOG0617|consen  212 VNPIA  216 (264)
T ss_pred             CChHH
Confidence            65554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=6.7e-19  Score=156.26  Aligned_cols=181  Identities=27%  Similarity=0.444  Sum_probs=160.5

Q ss_pred             ccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccc
Q 038149          582 LLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM  661 (844)
Q Consensus       582 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~  661 (844)
                      +.++...+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.     
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-----  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-----  100 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence            456778889999999999 66778999999999999999999 88999999999999999999997 78888876     


Q ss_pred             ccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCc
Q 038149          662 EKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNN  740 (844)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N  740 (844)
                                                                 ++.|+.|||.+|++.. .+|..|-.++.|+.|+|+.|
T Consensus       101 -------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen  101 -------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             -------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence                                                       5678899999999975 67999999999999999999


Q ss_pred             ccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCc---cccCCCCCCc
Q 038149          741 FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDE---SNYRGNPYLC  815 (844)
Q Consensus       741 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~---~~~~gn~~lc  815 (844)
                      .+. .+|..++++++|+.|.+..|.+- .+|.+++.++.|+.|.+.+|+++-..|+.+++.-...   ...+.||+.-
T Consensus       138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            998 89999999999999999999998 7999999999999999999999988887766654322   3356788764

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=7.4e-14  Score=161.06  Aligned_cols=119  Identities=39%  Similarity=0.685  Sum_probs=108.5

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      .++.|+|++|.++|.+|.+++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCC--CcCCCcCccccCCCCCCcCccCCCCCCC
Q 038149          787 YNNLSGTVPNK--GQFANFDESNYRGNPYLCGPAVRKNCSS  825 (844)
Q Consensus       787 ~N~l~g~ip~~--~~~~~~~~~~~~gn~~lc~~~~~~~c~~  825 (844)
                      +|+++|.+|..  ..+..+....+.||+++|+.|....|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~  539 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP  539 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence            99999999975  2334455678999999999876667853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=6.9e-15  Score=154.60  Aligned_cols=188  Identities=27%  Similarity=0.437  Sum_probs=152.8

Q ss_pred             CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149          564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY  643 (844)
Q Consensus       564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  643 (844)
                      -...+++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ ..|..++.|+ |+.|-+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            345566677766 78888888888888899998888 78888889999999999999998 7888888887 88999999


Q ss_pred             CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149          644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP  723 (844)
Q Consensus       644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  723 (844)
                      |+++ .+|..++.                                                ...|..||.|.|.+. .+|
T Consensus       153 Nkl~-~lp~~ig~------------------------------------------------~~tl~~ld~s~nei~-slp  182 (722)
T KOG0532|consen  153 NKLT-SLPEEIGL------------------------------------------------LPTLAHLDVSKNEIQ-SLP  182 (722)
T ss_pred             Cccc-cCCccccc------------------------------------------------chhHHHhhhhhhhhh-hch
Confidence            9987 67776652                                                456788999999998 889


Q ss_pred             chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC---CCcC
Q 038149          724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN---KGQF  800 (844)
Q Consensus       724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~---~~~~  800 (844)
                      ..++++.+|+.|++..|++. .+|.++..|+ |..||+|+|+++ .||-.|.+|..|++|-|.+|+|..+.-+   .|..
T Consensus       183 sql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV  259 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV  259 (722)
T ss_pred             HHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence            99999999999999999998 7788888665 889999999998 8999999999999999999999753322   2555


Q ss_pred             CCcCcccc
Q 038149          801 ANFDESNY  808 (844)
Q Consensus       801 ~~~~~~~~  808 (844)
                      .-|+-++.
T Consensus       260 HIFKyL~~  267 (722)
T KOG0532|consen  260 HIFKYLST  267 (722)
T ss_pred             eeeeeecc
Confidence            55554443

>PLN03150 hypothetical protein; Provisional

Probab=99.40  E-value=1.6e-12  Score=150.07  Aligned_cols=152  Identities=28%  Similarity=0.429  Sum_probs=92.9

Q ss_pred             CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCC----CCCceEecCC--CC--ceEEEeeCcCcccCCCC
Q 038149            9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC----TWERIKCNAT--TG--RVMELSLDSAIQVDSDD   80 (844)
Q Consensus         9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C----~w~gv~c~~~--~~--~V~~l~L~~~~~~~~~~   80 (844)
                      ..+.++|.+||++||+.+..    +.    ..+|..   ..||    .|.||.|...  .+  +|+.|+|+++       
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~----~~----~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------  428 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGL----PL----RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------  428 (623)
T ss_pred             cccCchHHHHHHHHHHhcCC----cc----cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCC-------
Confidence            45677899999999998853    22    248953   3443    7999999631  11  3555555554       


Q ss_pred             CCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCC
Q 038149           81 VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNS  160 (844)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  160 (844)
                                                 .+.+..+    ..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++|.
T Consensus       429 ---------------------------~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~  477 (623)
T PLN03150        429 ---------------------------GLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS  477 (623)
T ss_pred             ---------------------------CccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC
Confidence                                       4444444    345556666666666666666666666666666666666666


Q ss_pred             CCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCC-CCCCcEEEccCCcC
Q 038149          161 FSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEF  212 (844)
Q Consensus       161 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~-l~~L~~L~L~~n~l  212 (844)
                      + .+.+| ..++++++|++|+|++|.++|.+|.. +.. ..++..+++.+|..
T Consensus       478 l-sg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        478 F-NGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             C-CCCCc-hHHhcCCCCCEEECcCCcccccCChH-HhhccccCceEEecCCcc
Confidence            6 44454 45666666666666666666666543 333 34556666666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=4.3e-12  Score=140.36  Aligned_cols=122  Identities=27%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             EEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC-CCcEEECCCCccccccCccccCCCCCCEEECCCCc
Q 038149          519 VLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS-SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE  597 (844)
Q Consensus       519 ~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  597 (844)
                      .+....|.+...+. .+..++.++.|++.+|.+....+...... +|+.|++++|++. .+|..+..++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            45555555432221 22333445555555555543333222331 4444444444444 333344444444444444444


Q ss_pred             CCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       598 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      +. .+|...+..+.|+.|++++|+++ .+|........|+.+++++|
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            44 22332223444444444444444 33333333333444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.3e-13  Score=145.05  Aligned_cols=155  Identities=30%  Similarity=0.451  Sum_probs=86.8

Q ss_pred             cEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCc
Q 038149          494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNS  573 (844)
Q Consensus       494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  573 (844)
                      ...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|++++++.|+++... .....--|+.|.+++|+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lpLkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLP-DGLCDLPLKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCC-hhhhcCcceeEEEecCc
Confidence            34555555555 45555555555555556555554 44555555555555555555554221 11112234555555555


Q ss_pred             cccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCch
Q 038149          574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC  653 (844)
Q Consensus       574 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  653 (844)
                      ++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..++.|+ |..||+|.|+++ .+|.+
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchh
Confidence            55 56666666666666666666666 45555666666666666666665 4555555443 555666666655 55555


Q ss_pred             hhc
Q 038149          654 FTN  656 (844)
Q Consensus       654 ~~~  656 (844)
                      |.+
T Consensus       230 fr~  232 (722)
T KOG0532|consen  230 FRK  232 (722)
T ss_pred             hhh
Confidence            544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2.3e-11  Score=134.54  Aligned_cols=101  Identities=29%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             EecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCC-CCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcc
Q 038149          544 LDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSS-QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNL  622 (844)
Q Consensus       544 L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  622 (844)
                      ++++.|.+...+......+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            44444444322222223344555555555554 3343344332 4555555555544 2333444455555555555555


Q ss_pred             cccCCcccCCCCCCCEEEcCCCccc
Q 038149          623 QGNIPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       623 ~~~~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      + .+|...+.++.|+.|++++|+++
T Consensus       176 ~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         176 S-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             h-hhhhhhhhhhhhhheeccCCccc
Confidence            4 33333334445555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.2e-11  Score=120.29  Aligned_cols=88  Identities=28%  Similarity=0.334  Sum_probs=53.3

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc-CCccccCCCCCCEE
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ-IPPELGELSFLAIF  783 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L  783 (844)
                      +++|+.||||+|.++ .+-.+-..+.+.+.|.|+.|.|..  -+.++.|-+|+.||+++|+|... --..+++|+-|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            345666666666665 444444455566666666666641  23456666667777777766532 12456777777777


Q ss_pred             EccCCcccccCC
Q 038149          784 NVSYNNLSGTVP  795 (844)
Q Consensus       784 ~ls~N~l~g~ip  795 (844)
                      -|.+|++++.+-
T Consensus       405 ~L~~NPl~~~vd  416 (490)
T KOG1259|consen  405 RLTGNPLAGSVD  416 (490)
T ss_pred             hhcCCCccccch
Confidence            777887776443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.3e-10  Score=109.58  Aligned_cols=126  Identities=37%  Similarity=0.438  Sum_probs=39.5

Q ss_pred             CCCCEEECCCCCCCCCCcCccccc-CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccc-cCCCCC
Q 038149          149 TSLTSLFLQGNSFSEGFKHNKGLV-NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL-SNLTYL  226 (844)
Q Consensus       149 ~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L  226 (844)
                      .++++|+|.+|.|+.  +.  .+. .+.+|+.|+|++|.|+ .+  +.+..+++|++|++++|+|+.. ...+ ..+++|
T Consensus        19 ~~~~~L~L~~n~I~~--Ie--~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L   90 (175)
T PF14580_consen   19 VKLRELNLRGNQIST--IE--NLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             ccccccccccccccc--cc--chhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence            344555555555532  21  233 3556666666666665 23  2456666666666666666643 2233 346667


Q ss_pred             CEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCcc--ChhhhcCCCCCCEEEcc
Q 038149          227 RVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF--PLSVLANHSRLEVFQLS  282 (844)
Q Consensus       227 ~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~  282 (844)
                      ++|++++|++...-....+..+++|++|++.+|.+...-  -...+..+++|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777777776653222244566677777777777665321  12245666777766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.5e-10  Score=109.13  Aligned_cols=127  Identities=36%  Similarity=0.383  Sum_probs=40.3

Q ss_pred             CCCCCEEeCCCCCCCCCchhhhc-CCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149          124 LKQLKILNIGYNSFNESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL  202 (844)
Q Consensus       124 l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  202 (844)
                      ..+++.|+|++|.|+.+  +.++ .+.+|+.|+|++|.|+.  +.  .+..+++|++|++++|+|+ .+.......+++|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--cc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            33445555555544332  1233 34555555555555533  22  4556666667777777666 3332111346677


Q ss_pred             cEEEccCCcCCcC-CcccccCCCCCCEEECcCCCCCCCCC---hhhhcCCCCCCeEecCC
Q 038149          203 VELNINENEFDGL-LPQCLSNLTYLRVLDLSSNKLSGNLP---LSVIANLTSLEYLSLFD  258 (844)
Q Consensus       203 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p---~~~l~~l~~L~~L~L~~  258 (844)
                      ++|++++|+|... .-..+..+++|++|++.+|.++ ..+   ...+..+|+|+.||-..
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence            7777777766543 1244566777777777777766 222   13456778888887543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6e-11  Score=121.78  Aligned_cols=234  Identities=21%  Similarity=0.177  Sum_probs=146.2

Q ss_pred             EEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCch-hhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCE
Q 038149          101 VLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLV-PLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEV  179 (844)
Q Consensus       101 ~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  179 (844)
                      .+.+++-.+..+.-++....=+++++|+.+.|.++.+..... .....|++++.|||++|-+..-..-......+++|+.
T Consensus        97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~  176 (505)
T KOG3207|consen   97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN  176 (505)
T ss_pred             HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence            334444444443332222333567778888887776643222 4566788888888888876431111233456788888


Q ss_pred             EEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-ccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCC
Q 038149          180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD  258 (844)
Q Consensus       180 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~  258 (844)
                      |+|+.|++........-..+++|+.|.|+.|.++...- .....+|+|+.|+|..|... .+-.....-+..|++|||++
T Consensus       177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccC
Confidence            88888877643333333456788888888888774322 22346788888888888532 11113345567788888888


Q ss_pred             CcccCccChhhhcCCCCCCEEEccCccccCCCCCC-------CCCCcccEEEccCCCCCcC-cChhhhcCCCCCEEEccC
Q 038149          259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW-------LPKFQLKVLNLRHCNISGT-IPRFLQYQYDFRYIDLSD  330 (844)
Q Consensus       259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-------~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~  330 (844)
                      |++...-.....+.++.|+.|.++.+.+......-       ...++|+.|++..|++..- .-..+..+.+|+.|.+..
T Consensus       256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence            87765443345777888888888888777654432       2356899999999988431 223456677888888888


Q ss_pred             Ccccc
Q 038149          331 NNLVD  335 (844)
Q Consensus       331 n~l~~  335 (844)
                      |.+..
T Consensus       336 n~ln~  340 (505)
T KOG3207|consen  336 NYLNK  340 (505)
T ss_pred             ccccc
Confidence            88764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=2.3e-11  Score=121.55  Aligned_cols=92  Identities=22%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             CceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCcccc-------ccccCCCCCCCEEeCCCC
Q 038149           63 GRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKA-------YNTSRSLKQLKILNIGYN  135 (844)
Q Consensus        63 ~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~n  135 (844)
                      ..+++|+|+|+.+.. ...     ..-...+.+.+.|+..++|+- ++|....+.       ..++..+++|++||||.|
T Consensus        30 ~s~~~l~lsgnt~G~-EAa-----~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGT-EAA-----RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             CceEEEeccCCchhH-HHH-----HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            456667776665410 000     011223455566666666543 333332221       134445556666666666


Q ss_pred             CCCCCchh----hhcCCCCCCEEECCCCCC
Q 038149          136 SFNESLVP----LLTSLTSLTSLFLQGNSF  161 (844)
Q Consensus       136 ~l~~~~~~----~l~~l~~L~~L~Ls~n~l  161 (844)
                      .+....+.    .+..++.|++|.|.+|.+
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            65433332    234556666666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=4.5e-11  Score=119.49  Aligned_cols=187  Identities=20%  Similarity=0.251  Sum_probs=100.9

Q ss_pred             cCCCCcEEeCcCcccCCcCCcc----ccCCCCcCEecCCCCcCcccc-------------cccccCCCCCcEEEccCccc
Q 038149          441 SCVSLEFMNLSHNYFDGQIFPK----YMNLAKLVFLFLNDNQFTGRL-------------EVGLLNASSLYVLDVSNNML  503 (844)
Q Consensus       441 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~ls~n~l  503 (844)
                      .+++|++++||+|-+.-..++.    +..+..|++|.|.+|.+...-             .......+.|+++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            3445555555555544332222    234555666666666554111             11123356788888888877


Q ss_pred             CcC----CChhhhcCCCCCEEeCCCCccccc----CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccc
Q 038149          504 SGQ----LPRWIGKFSNLDVLLMSRNSFEGD----VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS  575 (844)
Q Consensus       504 ~~~----~p~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~  575 (844)
                      ...    +...|...+.|+.+.++.|.+...    +...+..++.|++|||.+|-++.....                  
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------------------  231 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------------------  231 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH------------------
Confidence            632    223456677888888888876422    223466777777777777766532211                  


Q ss_pred             cccCccccCCCCCCEEECCCCcCCcccchhh-----hCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCcc
Q 038149          576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLI-----NEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTL  646 (844)
Q Consensus       576 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  646 (844)
                       .+...+..+++|++|++++|.+...-...+     ...++|++|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       232 -~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  232 -ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             -HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             122334444555555555555543222222     2345666666666666521    223344466677777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.6e-10  Score=118.77  Aligned_cols=211  Identities=21%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             ccEEEccCCCCCcCcC-hhhhcCCCCCEEEccCCcccccCch-hHhhcCCCCcEEEcCCCcccccccCC--CCCCCCCEE
Q 038149          299 LKVLNLRHCNISGTIP-RFLQYQYDFRYIDLSDNNLVDTFPT-WLLQNNTKLEIMFLFNNFLTGNLQLP--NSKRNLPHL  374 (844)
Q Consensus       299 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~L~~L  374 (844)
                      |+++.|+++.+..... .....+++++.|||+.|-+....+. .+...+++|+.|+++.|.+.......  ..++.|+.|
T Consensus       123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L  202 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL  202 (505)
T ss_pred             hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence            4444555554432211 3455677777777777766543221 34456666776666666665332111  145666677


Q ss_pred             EccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCCh-hhhhcCCCCcEEeCcCc
Q 038149          375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPK-HFLTSCVSLEFMNLSHN  453 (844)
Q Consensus       375 ~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n  453 (844)
                      .++.|.++..--..+...+|+|+.|++..|.....-......+..|+.|||++|++.. .+. .....++.|+.|+++.+
T Consensus       203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcccc
Confidence            7777766543333333446777777777764222222233444556666666666542 221 11234455555555555


Q ss_pred             ccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcC-CChhhhcCCCCCEEeCCCCccc
Q 038149          454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ-LPRWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       454 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~  528 (844)
                      .+...-.+..                  ..-.-...+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus       282 gi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  282 GIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             CcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            4443211110                  0000023346666666666666421 1123444556666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=9.2e-11  Score=114.20  Aligned_cols=203  Identities=25%  Similarity=0.231  Sum_probs=109.0

Q ss_pred             ccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCccccc
Q 038149           93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLV  172 (844)
Q Consensus        93 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~  172 (844)
                      +..|++|..+.+|.+.-..+..     ....-+.|+++...+..+...  +.+--.+.+....-+.-....|... ..+-
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~-----~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~-~~~d  281 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVD-----IELLKPTLQTICVHNTTIQDV--PSLLPETILADPSGSEPSTSNGSAL-VSAD  281 (490)
T ss_pred             hHHhhhhheeeeeccchhheec-----eeecCchhheeeeeccccccc--ccccchhhhcCccCCCCCccCCceE-Eecc
Confidence            4456677777777765333221     112235677777766544321  1111111111111111111122111 1222


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC
Q 038149          173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE  252 (844)
Q Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~  252 (844)
                      .-+.|+.+|||+|.|+ .+. +.+.-.+.++.|++++|.+..+  ..+..+++|+.|||++|.++ .+. ++-.++-+.+
T Consensus       282 TWq~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIK  355 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIK  355 (490)
T ss_pred             hHhhhhhccccccchh-hhh-hhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhh-hhHhhhcCEe
Confidence            3345666777777665 343 3355566777777777776643  23666677777777777666 444 5555666677


Q ss_pred             eEecCCCcccCccChhhhcCCCCCCEEEccCccccCCC--CCCCCCCcccEEEccCCCCCcC
Q 038149          253 YLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETEN--FPWLPKFQLKVLNLRHCNISGT  312 (844)
Q Consensus       253 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~L~~n~l~~~  312 (844)
                      .|.|+.|.+..   .+.++++-+|..|++++|+|....  .....++-|+.+.|.+|.+.+.
T Consensus       356 tL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  356 TLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            77777776542   123556666777777777766432  2334455677888888887754

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.96  E-value=6.6e-10  Score=78.39  Aligned_cols=43  Identities=28%  Similarity=0.639  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEec
Q 038149           12 LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCN   59 (844)
Q Consensus        12 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~   59 (844)
                      +++|++||++||+++..   ++.  +.+.+|+.....+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~---~~~--~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNN---DPS--GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT----SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhccc---ccC--cccccCCCcCCCCCeeeccEEeC
Confidence            36899999999999975   243  78999986423699999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=6.3e-10  Score=123.18  Aligned_cols=85  Identities=21%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc---CCcc-ccCCCCCCEE
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ---IPPE-LGELSFLAIF  783 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L  783 (844)
                      |+.+++++|++. .++..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ......+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566677777766 4445566667777777777777632  1244555666666666665521   1221 4556667777


Q ss_pred             EccCCcccccCC
Q 038149          784 NVSYNNLSGTVP  795 (844)
Q Consensus       784 ~ls~N~l~g~ip  795 (844)
                      .+.+|......+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            777777766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=4.3e-09  Score=124.17  Aligned_cols=130  Identities=30%  Similarity=0.328  Sum_probs=74.0

Q ss_pred             CCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCC--CCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccC
Q 038149           96 FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNS--FNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVN  173 (844)
Q Consensus        96 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  173 (844)
                      ....|...+-+|.+..+..      -..+++|++|-+..|.  +.......|..++.|++|||++|.- -+.+| ..++.
T Consensus       522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP-~~I~~  593 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLP-SSIGE  593 (889)
T ss_pred             hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCC-hHHhh
Confidence            3455566665555544332      1233456666666664  4444555566666666666666542 23344 55666


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCC
Q 038149          174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK  235 (844)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  235 (844)
                      |-+||+|++++..+. .+| ..+.+++.|.+|++..+.-...+|..+..+++|++|.+....
T Consensus       594 Li~LryL~L~~t~I~-~LP-~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLP-SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCcc-ccc-hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            666666666666665 444 346666666666666665444445555556666666665443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.9e-09  Score=80.64  Aligned_cols=59  Identities=41%  Similarity=0.541  Sum_probs=30.7

Q ss_pred             ccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149          731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       731 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554333445555555555555555554444555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=7.3e-09  Score=80.13  Aligned_cols=61  Identities=41%  Similarity=0.524  Sum_probs=56.1

Q ss_pred             ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149          706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL  766 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  766 (844)
                      ++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999966567889999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=1.6e-09  Score=120.06  Aligned_cols=245  Identities=28%  Similarity=0.305  Sum_probs=112.7

Q ss_pred             CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149           95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL  174 (844)
Q Consensus        95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  174 (844)
                      .+..++.+++..|.+..+.     ..+..+++|+.|++..|.+..+.. .+..+++|++|++++|.|+.  +  ..+..+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i--~~l~~l  139 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--L--EGLSTL  139 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhhccc-chhhhhcchheecccccccc--c--cchhhc
Confidence            3444445555555444311     234455555555555555533211 14445555555555555532  1  234444


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-ccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCe
Q 038149          175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEY  253 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~  253 (844)
                      +.|+.|++++|.++ .+  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+. .+.  .+..+..+..
T Consensus       140 ~~L~~L~l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~--~~~~~~~l~~  212 (414)
T KOG0531|consen  140 TLLKELNLSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE--GLDLLKKLVL  212 (414)
T ss_pred             cchhhheeccCcch-hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc--chHHHHHHHH
Confidence            44555555555554 11  223344555555555555443322 1 234444445555554443 221  2222333333


Q ss_pred             EecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCC-CCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCc
Q 038149          254 LSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW-LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN  332 (844)
Q Consensus       254 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  332 (844)
                      +++..|.++                         ...... ....+|+.+++++|++.. .+..+..+..+..+++.+|+
T Consensus       213 ~~l~~n~i~-------------------------~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  213 LSLLDNKIS-------------------------KLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             hhcccccce-------------------------eccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcc
Confidence            344444333                         221111 111136666777776653 22455566677777777776


Q ss_pred             ccccCchhHhhcCCCCcEEEcCCCccccccc-----CCCCCCCCCEEEccCCcccccC
Q 038149          333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-----LPNSKRNLPHLVISNNSFIGKL  385 (844)
Q Consensus       333 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~  385 (844)
                      +...-..   ...+.+..+....+.+.....     .....+.++...+..+......
T Consensus       267 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  267 ISNLEGL---ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             ccccccc---cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            6533221   133444445555555442211     1235567777777777665433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=7.4e-08  Score=113.90  Aligned_cols=273  Identities=23%  Similarity=0.191  Sum_probs=151.6

Q ss_pred             CCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcc-cccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEe
Q 038149          346 TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF-IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLD  424 (844)
Q Consensus       346 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  424 (844)
                      ...+.+.+-+|.+.... ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            44555555555554332 122445677777777752 3466666666788888888888766667888888888888888


Q ss_pred             ccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcC--cccccccccCCCCCcEEEccCcc
Q 038149          425 LSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF--TGRLEVGLLNASSLYVLDVSNNM  502 (844)
Q Consensus       425 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~ls~n~  502 (844)
                      +++..+. .+|..+ ..+..|.+|++..+.-...++.....+++|++|.+..-..  +...-..+..+..|+.+......
T Consensus       602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            8888885 677775 6778888888887765555556666688888887765432  22222334455556555554333


Q ss_pred             cCcCCChhhhcCCCCC----EEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC------C-CCCCcEEECCC
Q 038149          503 LSGQLPRWIGKFSNLD----VLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS------N-HSSLRYLFPHN  571 (844)
Q Consensus       503 l~~~~p~~l~~l~~L~----~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~------~-~~~L~~L~l~~  571 (844)
                      .  .+-..+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+........      . .+++..+...+
T Consensus       680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~  756 (889)
T KOG4658|consen  680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN  756 (889)
T ss_pred             h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence            2  1111122222222    2222222222 334456667777777777776643221110      0 11222222222


Q ss_pred             CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149          572 NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN  625 (844)
Q Consensus       572 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  625 (844)
                      +..- ..+.+....++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus       757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             cccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            2211 1222233446677777776666555555555555555555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=4.4e-09  Score=114.35  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=17.8

Q ss_pred             CCCccCCCCCcEEeCCCCCCCC
Q 038149           90 MSLFVPFQELHVLDLSDNRFEG  111 (844)
Q Consensus        90 ~~~~~~l~~L~~L~Ls~n~i~~  111 (844)
                      +-.+..|+.||+|.|.++.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             CceeccccceeeEEecCcchhh
Confidence            3457889999999999988764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.38  E-value=1.6e-08  Score=87.54  Aligned_cols=64  Identities=30%  Similarity=0.435  Sum_probs=33.5

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE  773 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  773 (844)
                      .++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.+|-.||.-.|.+- +||..
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            3445555555555 55555555555555555555555 44444555555555555555544 34433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.3e-08  Score=99.67  Aligned_cols=88  Identities=20%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149           98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL  177 (844)
Q Consensus        98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  177 (844)
                      .|++||||+..|+...-   ...++.|.+|+.|.|.++++.+.+...++.-.+|+.|+|+.+.=-+..-....+.+|+.|
T Consensus       186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            46666666655543211   123455666666666666666666666666666666666655311100001223455555


Q ss_pred             CEEEccCCcCC
Q 038149          178 EVLDLSGNRIT  188 (844)
Q Consensus       178 ~~L~Ls~n~l~  188 (844)
                      ..|+|+.|.++
T Consensus       263 ~~LNlsWc~l~  273 (419)
T KOG2120|consen  263 DELNLSWCFLF  273 (419)
T ss_pred             hhcCchHhhcc
Confidence            55555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=4.2e-08  Score=96.10  Aligned_cols=131  Identities=20%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             ccEEEccCCCCCcCcChhhhcCCCCCEEEccCC-cccccCchhHhhcCCCCcEEEcCCCccccccc---CCCCCCCCCEE
Q 038149          299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN-NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ---LPNSKRNLPHL  374 (844)
Q Consensus       299 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~L~~L  374 (844)
                      |+.|.+.++++...+...+..-..|+.|+++.+ .++......++.+++.|..|+++.|.+.....   +..--++|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            333444444444444444555555555555543 23333334444555556666655555543210   11133555666


Q ss_pred             EccCCccc--ccCChhhhcCCCCccEEEccCCc-CCCCCCccccccccCcEEeccCCc
Q 038149          375 VISNNSFI--GKLPENFGLILPELVYLDMSQNS-FEGSIPPSMGYMERLLFLDLSSNN  429 (844)
Q Consensus       375 ~l~~n~l~--~~~p~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  429 (844)
                      +++++.-.  ..--..+...+|+|.+|||++|. ++......|..++.|++|.++.|.
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            66655211  00011122335666666666653 332223344455556666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=1.7e-08  Score=109.86  Aligned_cols=128  Identities=28%  Similarity=0.297  Sum_probs=98.5

Q ss_pred             CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149          394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF  473 (844)
Q Consensus       394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (844)
                      ..|...+.++|.+. .+..++.-++.|+.|+|++|+++. +.  .+..|+.|++|||++|.+....-.....+. |+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence            46778888899887 667788888899999999999874 33  467899999999999998765433444454 99999


Q ss_pred             CCCCcCcccccccccCCCCCcEEEccCcccCcCCC-hhhhcCCCCCEEeCCCCccc
Q 038149          474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~  528 (844)
                      +++|.++.  -.++.++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|.+-
T Consensus       239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99998873  3457788999999999998775211 23567788899999999874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.3e-07  Score=90.94  Aligned_cols=112  Identities=25%  Similarity=0.221  Sum_probs=64.9

Q ss_pred             CCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCE
Q 038149          150 SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLI-MQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV  228 (844)
Q Consensus       150 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  228 (844)
                      .++.|.+.++.|.+...-...-..++.++.+||.+|.|+..-. ...+.+++.|++|+|+.|.+...+...=....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4445555555553311111112356777788888887763211 122457788888888888776543221134567788


Q ss_pred             EECcCCCCCCCCChhhhcCCCCCCeEecCCCcc
Q 038149          229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF  261 (844)
Q Consensus       229 L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l  261 (844)
                      |-|.+..+...-....+..++.+++|+++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            877777665333334556677777777777744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=2.4e-07  Score=80.42  Aligned_cols=89  Identities=25%  Similarity=0.382  Sum_probs=52.5

Q ss_pred             CcEEECCCCccccccCcccc---CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 038149          564 LRYLFPHNNSLSGTIPNALL---QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVD  640 (844)
Q Consensus       564 L~~L~l~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  640 (844)
                      +..++|++|++- .+++...   ....|+..+|++|.+....+..-...+.++.|++++|+++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            344555555543 3333332   3345556677777777443333344556777777777777 6666677777777777


Q ss_pred             cCCCccccCCCchhh
Q 038149          641 ISYNTLNGPIPSCFT  655 (844)
Q Consensus       641 Ls~N~l~~~~p~~~~  655 (844)
                      ++.|++. ..|+.+.
T Consensus       107 l~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIA  120 (177)
T ss_pred             cccCccc-cchHHHH
Confidence            7777765 4444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=6.3e-07  Score=86.83  Aligned_cols=92  Identities=22%  Similarity=0.280  Sum_probs=42.9

Q ss_pred             CCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCC---CCCch-------hhhcCCCCCCEEECCCCCCCCCC
Q 038149           96 FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSF---NESLV-------PLLTSLTSLTSLFLQGNSFSEGF  165 (844)
Q Consensus        96 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~-------~~l~~l~~L~~L~Ls~n~l~~~~  165 (844)
                      +..+..+|||+|.|...........+.+-++|+..+++.-..   .+.++       +++-.|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455566666666655443333344555556666666654211   11222       23344555555555555553222


Q ss_pred             cC--cccccCCCCCCEEEccCCcC
Q 038149          166 KH--NKGLVNLRNLEVLDLSGNRI  187 (844)
Q Consensus       166 ~~--~~~l~~l~~L~~L~Ls~n~l  187 (844)
                      ++  ...++.-+.|++|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            21  12233444455555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.8e-06  Score=83.53  Aligned_cols=196  Identities=20%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             cCCCCcEEeCcCcccCCc--CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCc-CCChhhhcCCCC
Q 038149          441 SCVSLEFMNLSHNYFDGQ--IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG-QLPRWIGKFSNL  517 (844)
Q Consensus       441 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L  517 (844)
                      .++.++.+||.+|.|++.  +...+.++|.|++|+++.|.+...+...-....+|++|-+.+..+.- ..-..+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            344445555555554432  22223445555555555555543222111223455555555544431 122234455566


Q ss_pred             CEEeCCCCcccccC--CccccCC-CCCCEEecCC---------CcCcccCCCCCCCCCCcEEECCCCccccc-cCccccC
Q 038149          518 DVLLMSRNSFEGDV--SVQLSNL-EVARILDISE---------NKLYGPLEFSSNHSSLRYLFPHNNSLSGT-IPNALLQ  584 (844)
Q Consensus       518 ~~L~ls~n~l~~~~--~~~l~~l-~~L~~L~ls~---------n~l~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~l~~  584 (844)
                      +.|.++.|.+....  ....... +.+++|..-.         |++..      ..+++..+.+..|.+... -.+.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~s~ek~se~  222 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTESSEKGSEP  222 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh------hcccchheeeecCcccchhhcccCCC
Confidence            66666666322100  0000000 1122222222         22211      234455555555554322 1233445


Q ss_pred             CCCCCEEECCCCcCCccc-chhhhCCCCCCEEEccCCcccccCCc------ccCCCCCCCEEEcC
Q 038149          585 SSQLTTLDLRDNEFSGNI-AHLINEDSNLRALLLRGNNLQGNIPE------PLCHLRKLAIVDIS  642 (844)
Q Consensus       585 l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~Ls  642 (844)
                      ++.+..|+|+.|+|..-- -+.+..++.|..|.+++|.+...+..      -++.+++++.|+=+
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            556667777777776322 24566777777777777776533221      24566666666533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.91  E-value=5.3e-07  Score=92.80  Aligned_cols=135  Identities=18%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             cCCCCCEEEccCCcccc-cCchhHhhcCCCCcEEEcCCCcccccc---cCCCCCCCCCEEEccCCcccccC-ChhhhcCC
Q 038149          319 YQYDFRYIDLSDNNLVD-TFPTWLLQNNTKLEIMFLFNNFLTGNL---QLPNSKRNLPHLVISNNSFIGKL-PENFGLIL  393 (844)
Q Consensus       319 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~l  393 (844)
                      .+..|+.++.+++...+ ..-..+.++..+|+.+.+..++.-...   .+...++.|+.+++.++...... -......+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            35567777777654322 222334456666666666666532211   11224555555555555432111 11122235


Q ss_pred             CCccEEEccCCcC-CCC----CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCc
Q 038149          394 PELVYLDMSQNSF-EGS----IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN  453 (844)
Q Consensus       394 ~~L~~L~Ls~n~l-~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  453 (844)
                      +.|+.+.+++|.. ++.    ....-..+..|..+.++++..+.+-.......+++|+.+++-++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            5566666665532 111    01111234445555555555433322233344444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=4.4e-05  Score=81.20  Aligned_cols=73  Identities=14%  Similarity=0.259  Sum_probs=40.8

Q ss_pred             CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC-cccccCCcccCCCCCCCE
Q 038149          560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN-NLQGNIPEPLCHLRKLAI  638 (844)
Q Consensus       560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~  638 (844)
                      .+..++.|++++|.++ .+|.   -..+|++|+++++.--..+|+.+.  ++|++|++++| .+. .+|.      .|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence            3566777777777666 4452   123577777776443335555442  46777777776 333 3443      3555


Q ss_pred             EEcCCCc
Q 038149          639 VDISYNT  645 (844)
Q Consensus       639 L~Ls~N~  645 (844)
                      |+++.+.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            5555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.3e-05  Score=56.60  Aligned_cols=35  Identities=37%  Similarity=0.618  Sum_probs=13.3

Q ss_pred             cCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149          732 IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN  767 (844)
Q Consensus       732 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  767 (844)
                      |++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 23333444444444444444433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=2.1e-05  Score=55.50  Aligned_cols=36  Identities=47%  Similarity=0.721  Sum_probs=32.3

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS  743 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  743 (844)
                      +|++|++++|+++ .+|.++++|++|++|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            6899999999999 78888999999999999999998

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.2e-05  Score=92.97  Aligned_cols=149  Identities=30%  Similarity=0.365  Sum_probs=75.3

Q ss_pred             CCCCEEeCCCCCC-CCCchhhhc-CCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149          125 KQLKILNIGYNSF-NESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL  202 (844)
Q Consensus       125 ~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  202 (844)
                      .+|++||+++... ...-|..++ -+|+|+.|.+++-.+....+. ....++++|+.||+|+..++ .+  .+++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNIS-NL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCcc-Cc--HHHhccccH
Confidence            3566666666532 222333333 356666666666555332211 23455666666666666665 22  456666666


Q ss_pred             cEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCC---h---hhhcCCCCCCeEecCCCcccCccChhhhcCCCC
Q 038149          203 VELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLP---L---SVIANLTSLEYLSLFDNHFQESFPLSVLANHSR  275 (844)
Q Consensus       203 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p---~---~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  275 (844)
                      ++|.+.+=.+.. ..-..+.++++|++||+|..... ..+   .   +.-..+|+|+.||.++..+.+.+-...+...++
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            666665544432 11223455666666666665443 111   0   111236666666666665554433333444444


Q ss_pred             CCE
Q 038149          276 LEV  278 (844)
Q Consensus       276 L~~  278 (844)
                      |+.
T Consensus       277 L~~  279 (699)
T KOG3665|consen  277 LQQ  279 (699)
T ss_pred             Hhh
Confidence            443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=8.6e-06  Score=94.17  Aligned_cols=37  Identities=16%  Similarity=0.296  Sum_probs=25.3

Q ss_pred             hcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcC
Q 038149          318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLF  354 (844)
Q Consensus       318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  354 (844)
                      ..+++|+.||.|++.+.+.+-+.+...-++|+.+.+-
T Consensus       247 ~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  247 MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            3467888888888887777666666666666654443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.58  E-value=4.4e-05  Score=74.40  Aligned_cols=217  Identities=20%  Similarity=0.164  Sum_probs=142.9

Q ss_pred             CCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCcccc-------ccccCCCCCCCEEeCCC
Q 038149           62 TGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKA-------YNTSRSLKQLKILNIGY  134 (844)
Q Consensus        62 ~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~  134 (844)
                      ...+++++|+|+.+.  ....    .--...+++-++|++.++++- ++|...++.       ..++.+|++|+..+||.
T Consensus        29 ~d~~~evdLSGNtig--tEA~----e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          29 MDELVEVDLSGNTIG--TEAM----EELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             hcceeEEeccCCccc--HHHH----HHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            346889999998761  1100    000124566788888888864 445444432       25677899999999999


Q ss_pred             CCCCCCchh----hhcCCCCCCEEECCCCCCCCCCcCcc-------------cccCCCCCCEEEccCCcCCCCCc----c
Q 038149          135 NSFNESLVP----LLTSLTSLTSLFLQGNSFSEGFKHNK-------------GLVNLRNLEVLDLSGNRITGSLI----M  193 (844)
Q Consensus       135 n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~~----~  193 (844)
                      |.|....|+    .++.-+.|++|.+++|.+.  .+...             ...+-+.|++.....|++.. -+    .
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a  178 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSA  178 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHH
Confidence            988655554    4677899999999999863  22211             22455789999999999862 22    1


Q ss_pred             cccCCCCCCcEEEccCCcCCcCC-----cccccCCCCCCEEECcCCCCCCCCC----hhhhcCCCCCCeEecCCCcccCc
Q 038149          194 QGICDLKNLVELNINENEFDGLL-----PQCLSNLTYLRVLDLSSNKLSGNLP----LSVIANLTSLEYLSLFDNHFQES  264 (844)
Q Consensus       194 ~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~p----~~~l~~l~~L~~L~L~~n~l~~~  264 (844)
                      ..+..-.+|+++.+..|.|.-..     -..+..+.+|+.||+..|.++- ..    ...+...+.|+.|.+.+|-++..
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~-~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh-hhHHHHHHHhcccchhhhccccchhhccc
Confidence            22334468999999999775321     1123467899999999998872 21    13455677799999999987753


Q ss_pred             cChhhhc-----CCCCCCEEEccCccccCC
Q 038149          265 FPLSVLA-----NHSRLEVFQLSRLQVETE  289 (844)
Q Consensus       265 ~~~~~l~-----~l~~L~~L~l~~~~i~~~  289 (844)
                      -....+.     ..++|..|...+|.+...
T Consensus       258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             cHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            3333222     346777888887765543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.57  E-value=5.6e-06  Score=85.46  Aligned_cols=38  Identities=21%  Similarity=0.090  Sum_probs=21.1

Q ss_pred             cCCCCcEEEcCCCccccccc--CCCCCCCCCEEEccCCcc
Q 038149          344 NNTKLEIMFLFNNFLTGNLQ--LPNSKRNLPHLVISNNSF  381 (844)
Q Consensus       344 ~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l  381 (844)
                      .+..|+.+.++++..+....  ....+++|+.+++.+++-
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            34556666666665543221  223566777777766653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00035  Score=74.45  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCC-cCCcccchhhhCCCCCC
Q 038149          535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSGNIAHLINEDSNLR  613 (844)
Q Consensus       535 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~  613 (844)
                      +..+.+++.|++++|.+... |.  -+.+|+.|.+++|.-...+|+.+  ..+|+.|++++| .+. .+|      .+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence            44567888888888876543 32  34568888888765444666655  257888888888 443 444      3577


Q ss_pred             EEEccCCcc
Q 038149          614 ALLLRGNNL  622 (844)
Q Consensus       614 ~L~L~~N~l  622 (844)
                      .|+++++..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            777776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.0002  Score=67.07  Aligned_cols=105  Identities=26%  Similarity=0.371  Sum_probs=55.2

Q ss_pred             CCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEe
Q 038149          176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS  255 (844)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~  255 (844)
                      +...+||++|.+. .+  +.|..++.|.+|.|.+|+|+.+.|.--.-+++|+.|.|.+|++..--....+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4455666666654 22  24556666666666666666554443334556666666666655211122355566666666


Q ss_pred             cCCCcccCcc--ChhhhcCCCCCCEEEccC
Q 038149          256 LFDNHFQESF--PLSVLANHSRLEVFQLSR  283 (844)
Q Consensus       256 L~~n~l~~~~--~~~~l~~l~~L~~L~l~~  283 (844)
                      +-+|.....-  -...+..+++|+.||..+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666554211  111244455555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00024  Score=64.59  Aligned_cols=103  Identities=19%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             chhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccc
Q 038149          141 LVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL  220 (844)
Q Consensus       141 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  220 (844)
                      ....|.++++|+.+.+..+ +..  ++...|.++..|+.+.+.. .+. .++...|..+++|+.+++..+ +.......|
T Consensus        27 ~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f  100 (129)
T PF13306_consen   27 GENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF  100 (129)
T ss_dssp             -TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred             Chhhccccccccccccccc-ccc--cceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhh
Confidence            3334444444444444443 212  3334455555556665544 222 233344555666666666544 443444555


Q ss_pred             cCCCCCCEEECcCCCCCCCCChhhhcCCCCCC
Q 038149          221 SNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE  252 (844)
Q Consensus       221 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~  252 (844)
                      .++ +|+.+.+.. .+. .++...|.++++|+
T Consensus       101 ~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  101 SNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--T--EEE-TT-B-S-S----GGG------
T ss_pred             cCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            555 666666654 333 44445666665553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00029  Score=63.99  Aligned_cols=86  Identities=20%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             cCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhh
Q 038149          166 KHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVI  245 (844)
Q Consensus       166 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l  245 (844)
                      +....|.++++|+.+++..+ +. .+....|.++++|+.+.+.. .+.......|..+++|+.+++..+ +. .++...|
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f  100 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSF  100 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTT
T ss_pred             eChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhh
Confidence            33344455555555555443 32 33334444554455555543 222233334444555555555433 32 3333444


Q ss_pred             cCCCCCCeEecC
Q 038149          246 ANLTSLEYLSLF  257 (844)
Q Consensus       246 ~~l~~L~~L~L~  257 (844)
                      .++ +|+.+.+.
T Consensus       101 ~~~-~l~~i~~~  111 (129)
T PF13306_consen  101 SNC-NLKEINIP  111 (129)
T ss_dssp             TT--T--EEE-T
T ss_pred             cCC-CceEEEEC
Confidence            444 45555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00029  Score=66.06  Aligned_cols=106  Identities=25%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149           98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL  177 (844)
Q Consensus        98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  177 (844)
                      ....+||++|.+...      ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|+|..              
T Consensus        43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~--------------  102 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE--------------  102 (233)
T ss_pred             ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh--------------
Confidence            344566666665544      235556666666666666655555444444555555555555422              


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC---cccccCCCCCCEEECcCCC
Q 038149          178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL---PQCLSNLTYLRVLDLSSNK  235 (844)
Q Consensus       178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~n~  235 (844)
                                  --..+.+..|++|++|.+-+|.++..-   --.+.++++|++||+..-.
T Consensus       103 ------------l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  103 ------------LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ------------hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence                        111122444555555555555443221   1234566777777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.00048  Score=67.54  Aligned_cols=87  Identities=28%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCC--CCCCCchhhhcCCCCCCEEECCCCCCCCCCcCccccc
Q 038149           95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYN--SFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLV  172 (844)
Q Consensus        95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~  172 (844)
                      .+..|+.|++.+..++..      ..+-.+++|++|.+|.|  ++.+..+.....+++|++|++++|++.. .-....+.
T Consensus        41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~  113 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLK  113 (260)
T ss_pred             cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhh
Confidence            344555666665555543      33556777777777777  4544444444555777777777776631 01112344


Q ss_pred             CCCCCCEEEccCCcCC
Q 038149          173 NLRNLEVLDLSGNRIT  188 (844)
Q Consensus       173 ~l~~L~~L~Ls~n~l~  188 (844)
                      .+.+|..|++.+|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            5555555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00058  Score=67.01  Aligned_cols=68  Identities=26%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             chhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCC--cCCCCCcccccCCCCCCcEEEccCCcCC
Q 038149          141 LVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGN--RITGSLIMQGICDLKNLVELNINENEFD  213 (844)
Q Consensus       141 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~L~~n~l~  213 (844)
                      +......+..|+.|++.+..+++    ...+-.+++|++|.+|.|  ++.+.+..- ...+++|++|+++.|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceee----cccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence            33334444555555555554432    123444555555555555  333322221 223355555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.21  E-value=0.00059  Score=77.90  Aligned_cols=63  Identities=21%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             CCCccEEEccCCc-CCCCCCccccc-cccCcEEeccCCc-CCCCCChhhhhcCCCCcEEeCcCccc
Q 038149          393 LPELVYLDMSQNS-FEGSIPPSMGY-MERLLFLDLSSNN-FSRDLPKHFLTSCVSLEFMNLSHNYF  455 (844)
Q Consensus       393 l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l  455 (844)
                      +++|+.|+++++. +++..-..+.. +++|+.|.+.++. ++...-..+...++.|++|+++.+..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4566666666665 44332222222 5566666655555 44333334445566666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.00038  Score=68.33  Aligned_cols=82  Identities=26%  Similarity=0.189  Sum_probs=35.8

Q ss_pred             CCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccCh----hhhcC
Q 038149          197 CDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL----SVLAN  272 (844)
Q Consensus       197 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~----~~l~~  272 (844)
                      .+|+.|++|.|+-|.|+..  ..+..|++|+.|+|..|.|...-...-+.++++|+.|.|..|.-.|..+.    ..+.-
T Consensus        38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            3444444444444444432  22444445555555554444211112334555555555555544433221    23444


Q ss_pred             CCCCCEEE
Q 038149          273 HSRLEVFQ  280 (844)
Q Consensus       273 l~~L~~L~  280 (844)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            55555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.00084  Score=65.99  Aligned_cols=85  Identities=21%  Similarity=0.129  Sum_probs=51.2

Q ss_pred             CCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEe
Q 038149          370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN  449 (844)
Q Consensus       370 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  449 (844)
                      +.+.|+..+|.+.+   -.+...++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|...-.-..+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            44455555555442   12334577777888888877633  34677777888888777775322223455667777777


Q ss_pred             CcCcccCCcC
Q 038149          450 LSHNYFDGQI  459 (844)
Q Consensus       450 Ls~n~l~~~~  459 (844)
                      |..|.-.+..
T Consensus        95 L~ENPCc~~a  104 (388)
T KOG2123|consen   95 LDENPCCGEA  104 (388)
T ss_pred             hccCCccccc
Confidence            7766555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.78  E-value=0.0044  Score=36.24  Aligned_cols=18  Identities=56%  Similarity=0.792  Sum_probs=7.5

Q ss_pred             cCeEeccCcccccccCccc
Q 038149          732 IHALNLSNNFLSGSIPRSF  750 (844)
Q Consensus       732 L~~L~Ls~N~l~~~ip~~l  750 (844)
                      |++|||++|+|+ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.75  E-value=0.0028  Score=72.33  Aligned_cols=135  Identities=24%  Similarity=0.112  Sum_probs=84.6

Q ss_pred             cCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEECCCCC-CCCCCcC
Q 038149           94 VPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYN-SFNES----LVPLLTSLTSLTSLFLQGNS-FSEGFKH  167 (844)
Q Consensus        94 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~~~  167 (844)
                      ..++.|+.|.+.++.-...  .........+++|+.|+++++ .....    .......+++|+.|+++++. ++...+ 
T Consensus       185 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-  261 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-  261 (482)
T ss_pred             hhCchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence            3478899998887743221  111245678899999999873 22111    12345667999999999988 433111 


Q ss_pred             cccc-cCCCCCCEEEccCCc-CCCCCcccccCCCCCCcEEEccCCcCCcC--CcccccCCCCCCEEECc
Q 038149          168 NKGL-VNLRNLEVLDLSGNR-ITGSLIMQGICDLKNLVELNINENEFDGL--LPQCLSNLTYLRVLDLS  232 (844)
Q Consensus       168 ~~~l-~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls  232 (844)
                       ..+ ..+++|++|.+.++. ++..-.......++.|++|+++++.....  +.....++++|+.|.+.
T Consensus       262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence             222 238899999988887 56433344456788999999998865311  22223456666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.56  E-value=0.0046  Score=36.16  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=14.2

Q ss_pred             CCCEEeCCCCcccccCCccccC
Q 038149          755 MTESMDLSYNKLNGQIPPELGE  776 (844)
Q Consensus       755 ~L~~L~Ls~N~l~~~ip~~l~~  776 (844)
                      +|++|||++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 66666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.67  E-value=0.0047  Score=59.28  Aligned_cols=84  Identities=23%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN  784 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  784 (844)
                      +...+.||++.|++- ..-..+..++.|..||++.|.+. -.|..++++..+..+++..|.++ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            446788999999987 55667888899999999999998 78999999999999999999998 7899999999999999


Q ss_pred             ccCCccc
Q 038149          785 VSYNNLS  791 (844)
Q Consensus       785 ls~N~l~  791 (844)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999864

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.42  E-value=0.0024  Score=70.99  Aligned_cols=190  Identities=26%  Similarity=0.251  Sum_probs=100.0

Q ss_pred             CcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhh----cCC-CCCCEEECCCCCCCCCCc--Ccccc
Q 038149           99 LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL----TSL-TSLTSLFLQGNSFSEGFK--HNKGL  171 (844)
Q Consensus        99 L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~~~--~~~~l  171 (844)
                      +..|.|.+|.+...........+.....|..|++++|.+.+.....+    ... ..|++|++..|.++....  ....+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66666666666655554444556666667777777776653222222    222 455666666666532110  02334


Q ss_pred             cCCCCCCEEEccCCcCCC--C-Ccccc----cCCCCCCcEEEccCCcCCcC----CcccccCCCC-CCEEECcCCCCCCC
Q 038149          172 VNLRNLEVLDLSGNRITG--S-LIMQG----ICDLKNLVELNINENEFDGL----LPQCLSNLTY-LRVLDLSSNKLSGN  239 (844)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~--~-~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~l~~~  239 (844)
                      .....++.+|++.|.+..  . .....    +....++++|.+.+|.++..    ....+...+. ++.|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456666677777666531  0 00111    23456677777777766532    1122333444 55677777766522


Q ss_pred             CC---hhhhcCC-CCCCeEecCCCcccCccC---hhhhcCCCCCCEEEccCccccC
Q 038149          240 LP---LSVIANL-TSLEYLSLFDNHFQESFP---LSVLANHSRLEVFQLSRLQVET  288 (844)
Q Consensus       240 ~p---~~~l~~l-~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~~~i~~  288 (844)
                      .-   ...+..+ ..+++++++.|.+...-.   ...+..+..++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            10   0123334 456777777777664322   1234555677777777776543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.07  E-value=0.0019  Score=71.76  Aligned_cols=113  Identities=26%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             CCCCEEeCCCCCCCCCch----hhhcCCCCCCEEECCCCCCCCCCcC--cccccCC-CCCCEEEccCCcCCCCCc---cc
Q 038149          125 KQLKILNIGYNSFNESLV----PLLTSLTSLTSLFLQGNSFSEGFKH--NKGLVNL-RNLEVLDLSGNRITGSLI---MQ  194 (844)
Q Consensus       125 ~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l-~~L~~L~Ls~n~l~~~~~---~~  194 (844)
                      ..+..|.|.+|.+.....    ..+..+..|+.|++++|.+......  ...+... ..|++|++..|.+++.-.   .+
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            348899999999976444    4567889999999999998531111  1122332 567889999998874221   23


Q ss_pred             ccCCCCCCcEEEccCCcCCcC----Cccccc----CCCCCCEEECcCCCCC
Q 038149          195 GICDLKNLVELNINENEFDGL----LPQCLS----NLTYLRVLDLSSNKLS  237 (844)
Q Consensus       195 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~Ls~n~l~  237 (844)
                      .+.....++.++++.|.+...    ++..+.    ...++++|.+++|.++
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            455678888888888876421    222222    3456666666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.01  E-value=0.25  Score=26.69  Aligned_cols=11  Identities=73%  Similarity=1.059  Sum_probs=3.5

Q ss_pred             CCEEECcCCCC
Q 038149          226 LRVLDLSSNKL  236 (844)
Q Consensus       226 L~~L~Ls~n~l  236 (844)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.84  E-value=0.55  Score=28.56  Aligned_cols=21  Identities=52%  Similarity=0.706  Sum_probs=12.3

Q ss_pred             CCCCEEECcCCCCCCCCChhhh
Q 038149          224 TYLRVLDLSSNKLSGNLPLSVI  245 (844)
Q Consensus       224 ~~L~~L~Ls~n~l~~~~p~~~l  245 (844)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.84  E-value=0.55  Score=28.56  Aligned_cols=21  Identities=52%  Similarity=0.706  Sum_probs=12.3

Q ss_pred             CCCCEEECcCCCCCCCCChhhh
Q 038149          224 TYLRVLDLSSNKLSGNLPLSVI  245 (844)
Q Consensus       224 ~~L~~L~Ls~n~l~~~~p~~~l  245 (844)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5554433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.40  E-value=0.044  Score=52.84  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN  767 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  767 (844)
                      ++.+..||++.|++. -.|.+++++..++.+++.+|+.+ ..|.+++.++.++++++-.|.+.
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            567788999999998 88999999999999999999998 89999999999999999999876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.94  E-value=0.58  Score=28.46  Aligned_cols=14  Identities=50%  Similarity=0.722  Sum_probs=6.6

Q ss_pred             CCCCEEEccCCcCC
Q 038149          175 RNLEVLDLSGNRIT  188 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~  188 (844)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.94  E-value=0.58  Score=28.46  Aligned_cols=14  Identities=50%  Similarity=0.722  Sum_probs=6.6

Q ss_pred             CCCCEEEccCCcCC
Q 038149          175 RNLEVLDLSGNRIT  188 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~  188 (844)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.12  E-value=0.24  Score=29.57  Aligned_cols=12  Identities=42%  Similarity=0.686  Sum_probs=4.1

Q ss_pred             CCEEeCCCCccc
Q 038149          756 TESMDLSYNKLN  767 (844)
Q Consensus       756 L~~L~Ls~N~l~  767 (844)
                      |++|+|++|+|+
T Consensus         4 L~~L~l~~n~i~   15 (24)
T PF13516_consen    4 LETLDLSNNQIT   15 (24)
T ss_dssp             -SEEE-TSSBEH
T ss_pred             CCEEEccCCcCC
Confidence            344444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.99  E-value=0.21  Score=29.75  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=11.3

Q ss_pred             cccCeEeccCcccccccCcc
Q 038149          730 GEIHALNLSNNFLSGSIPRS  749 (844)
Q Consensus       730 ~~L~~L~Ls~N~l~~~ip~~  749 (844)
                      ++|++|+|++|.|++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            56677777777776554443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	844
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-38
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-38
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		5e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 211/841 (25%), Positives = 334/841 (39%), Gaps = 156/841 (18%)
Query: 21  EIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDD 80
           EI   I S  D+     +L  W  N+    CT++ + C       ++LS        S  
Sbjct: 13  EIHQLI-SFKDVLPDKNLLPDWSSNKNP--CTFDGVTCRDDKVTSIDLS--------SKP 61
Query: 81  VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNES 140
           +N GF  ++ SL        +  LS++   G      +  S SL  L   ++  NS +  
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLF-LSNSHING--SVSGFKCSASLTSL---DLSRNSLSGP 115
Query: 141 LVPXXXXXXXXXXXFLQGNSFSEGFKHN-KGLVNLRNLEVLDLSGNRITGS-----LIMQ 194
           +             FL  +S +  F     G + L +LEVLDLS N I+G+     ++  
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
           G  +LK+L    I+ N+  G +   +S    L  LD+SSN  S  +P   + + ++L++L
Sbjct: 176 GCGELKHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 228
Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
            +  N     F  ++ +  + L++  +S  Q      P LP   L+ L+L     +G IP
Sbjct: 229 DISGNKLSGDFSRAI-STCTELKLLNISSNQF-VGPIPPLPLKSLQYLSLAENKFTGEIP 286
Query: 315 RFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN--SKRNL 371
            FL    D    +DLS N+     P +    +    +    NNF +G L +      R L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGL 345
Query: 372 PHLVISNNSFIGKLPENF------------------GLILPELVY--------LDMSQNS 405
             L +S N F G+LPE+                   G ILP L          L +  N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 406 FEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN 465
           F G IPP++                   +P   L S   L  + L  N  +G+I  + M 
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
           +  L  L L+ N  TG +  GL N ++L  + +SNN L+G++P+WIG+  NL +L +S N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 526 SFEGDVSVQLSNLEVARILDISENKLYGPL---------EFSSNH-SSLRYLFPHNNSLS 575
           SF G++  +L +      LD++ N   G +         + ++N  +  RY++  N+ + 
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 576 GTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRK 635
                A               EF G  +  +N  S                     +   
Sbjct: 585 KECHGAGNLL-----------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 636 LAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
           +  +D+SYN L+G IP                                    E+  M   
Sbjct: 634 MMFLDMSYNMLSGYIPK-----------------------------------EIGSMP-- 656
Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
                      Y+  L+L  N+++G IP E+G L  ++ L+LS+N L G IP++ S L M
Sbjct: 657 -----------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
              +DL                        S NNLSG +P  GQF  F  + +  NP LC
Sbjct: 706 LTEIDL------------------------SNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 816 G 816
           G
Sbjct: 742 G 742

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 211/841 (25%), Positives = 334/841 (39%), Gaps = 156/841 (18%)
Query: 21  EIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDD 80
           EI   I S  D+     +L  W  N+    CT++ + C       ++LS        S  
Sbjct: 10  EIHQLI-SFKDVLPDKNLLPDWSSNKNP--CTFDGVTCRDDKVTSIDLS--------SKP 58
Query: 81  VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNES 140
           +N GF  ++ SL        +  LS++   G      +  S SL  L   ++  NS +  
Sbjct: 59  LNVGFSAVSSSLLSLTGLESLF-LSNSHING--SVSGFKCSASLTSL---DLSRNSLSGP 112
Query: 141 LVPXXXXXXXXXXXFLQGNSFSEGFKHN-KGLVNLRNLEVLDLSGNRITGS-----LIMQ 194
           +             FL  +S +  F     G + L +LEVLDLS N I+G+     ++  
Sbjct: 113 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 172
Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
           G  +LK+L    I+ N+  G +   +S    L  LD+SSN  S  +P   + + ++L++L
Sbjct: 173 GCGELKHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 225
Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
            +  N     F  ++ +  + L++  +S  Q      P LP   L+ L+L     +G IP
Sbjct: 226 DISGNKLSGDFSRAI-STCTELKLLNISSNQF-VGPIPPLPLKSLQYLSLAENKFTGEIP 283
Query: 315 RFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN--SKRNL 371
            FL    D    +DLS N+     P +    +    +    NNF +G L +      R L
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGL 342
Query: 372 PHLVISNNSFIGKLPENF------------------GLILPELVY--------LDMSQNS 405
             L +S N F G+LPE+                   G ILP L          L +  N 
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 406 FEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN 465
           F G IPP++                   +P   L S   L  + L  N  +G+I  + M 
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
           +  L  L L+ N  TG +  GL N ++L  + +SNN L+G++P+WIG+  NL +L +S N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 526 SFEGDVSVQLSNLEVARILDISENKLYGPL---------EFSSNH-SSLRYLFPHNNSLS 575
           SF G++  +L +      LD++ N   G +         + ++N  +  RY++  N+ + 
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 576 GTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRK 635
                A               EF G  +  +N  S                     +   
Sbjct: 582 KECHGAGNLL-----------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 636 LAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
           +  +D+SYN L+G IP                                    E+  M   
Sbjct: 631 MMFLDMSYNMLSGYIPK-----------------------------------EIGSMP-- 653
Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
                      Y+  L+L  N+++G IP E+G L  ++ L+LS+N L G IP++ S L M
Sbjct: 654 -----------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
              +DL                        S NNLSG +P  GQF  F  + +  NP LC
Sbjct: 703 LTEIDL------------------------SNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Query: 816 G 816
           G
Sbjct: 739 G 739

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 89/217 (41%), Gaps = 53/217 (24%)
Query: 626 IPEPLCHLRKLAIVDISYNTLNGPIP---SCFTNISLWMEKGNYYNSTLSLALPAEDNRE 682
           IP+ L  ++ L  +D SYN L+G +P   S   N+      GN     +S A+P      
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN----RISGAIP------ 166
Query: 683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFL 742
                          +SY G   K  T + +S N LTG IP     L  +  ++LS N L
Sbjct: 167 ---------------DSY-GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 743 SGSIPRSFSNLKMTE-----------------------SMDLSYNKLNGQIPPELGELSF 779
            G     F + K T+                        +DL  N++ G +P  L +L F
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 780 LAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG 816
           L   NVS+NNL G +P  G    FD S Y  N  LCG
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
           Y+ G+    N L G IP  I  L ++H L +++  +SG+IP   S +K   ++D SYN L
Sbjct: 82  YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 767 NGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFA 801
           +G +PP +  L  L       N +SG +P+  G F+
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 73/317 (23%)
Query: 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-------------------- 216
           ++ LDL+   + G  +  GI  + +L +L +N N FD L                     
Sbjct: 279 VQELDLTAAHLNG--LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 217 -----PQCLSNLTYLRVLDLSSNKLSGNLPLSV-IANLTSLEYLSLF--------DNHFQ 262
                 +CL  L  L+ LDLS + +  +   ++ + NL  L+YL+L         D  F+
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK 396
Query: 263 ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYD 322
           E   L +L           + L V+  + P+     L+VLNL HC +  +    L    D
Sbjct: 397 ECPQLELLD-------VAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 323 FRYIDLSDNNLVD--TFPTWLLQNNTKLEIMFLFN-NFLTGNLQLPNSKRNLPHLVISNN 379
            R+++L  N+  D     T LLQ    LEI+ L + N L+ + Q  +  RN+ HL +S+N
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN 509
Query: 380 SFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFL 439
           S  G   +    +  + +YL+M+ N+                          R +P H L
Sbjct: 510 SLTGDSMDALSHL--KGLYLNMASNNI-------------------------RIIPPHLL 542
Query: 440 TSCVSLEFMNLSHNYFD 456
            +      +NLSHN  D
Sbjct: 543 PALSQQSIINLSHNPLD 559

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           LQ  SF       K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   +
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 214
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
            P  L  LT L  L L+ N+L     +  +A+LT+L  L L +N      PLS L   + 
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
           L++   Q+S +       P      L  L L    +    P  +    +  Y+ L  NN+
Sbjct: 270 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
            D  P   L   TKL+ +F +NN
Sbjct: 322 SDISPVSSL---TKLQRLFFYNN 341

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           LQ  SF       K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   +
Sbjct: 157 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 213
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
            P  L  LT L  L L+ N+L     +  +A+LT+L  L L +N      PLS L   + 
Sbjct: 214 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 268
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
           L++   Q+S +       P      L  L L    +    P  +    +  Y+ L  NN+
Sbjct: 269 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 320
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
            D  P   L   TKL+ +F  NN
Sbjct: 321 SDISPVSSL---TKLQRLFFANN 340

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           LQ  +F       K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   +
Sbjct: 153 LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 209
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
            P  L  LT L  L L+ N+L     +  +A+LT+L  L L +N      PLS L   + 
Sbjct: 210 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
           L++   Q+S +       P      L  L L    +    P  +    +  Y+ L  NN+
Sbjct: 265 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
            D  P   L   TKL+ +F +NN
Sbjct: 317 SDISPVSSL---TKLQRLFFYNN 336

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           +V  L  +R+ G   + G+  L NL ++N + N+   + P  L NLT L  + +++N+++
Sbjct: 42  QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
              PL   ANLT+L  L+LF+N   +  PL  L N +RLE+
Sbjct: 99  DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
           K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   + P  L  LT L  
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDE 221
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF--QLSRLQV 286
           L L+ N+L     +  +A+LT+L  L L +N      PLS L   + L++   Q+S +  
Sbjct: 222 LSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 277
Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
                P      L  L L    +    P  +    +  Y+ L  NN+ D  P   L   T
Sbjct: 278 -----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL---T 327
Query: 347 KLEIMFLFNN 356
           KL+ +F +NN
Sbjct: 328 KLQRLFFYNN 337

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 170 GLVN-LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
           G+ N L +LEVL ++GN    + +     +L+NL  L++++ + + L P   ++L+ L+V
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           L+++SN+L  ++P  +   LTSL+ + L  N +  S P
Sbjct: 499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           +V  L  +R+ G   + G+  L NL ++N + N+   + P  L NLT L  + +++N+++
Sbjct: 42  QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
              PL   ANLT+L  L+LF+N   +  PL  L N +RLE+
Sbjct: 99  DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
           K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   + P  L  LT L  
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDE 221
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF--QLSRLQV 286
           L L+ N+L     +  +A+LT+L  L L +N      PLS L   + L++   Q+S +  
Sbjct: 222 LSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 277
Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
                P      L  L L    +    P  +    +  Y+ L  NN+ D  P   L   T
Sbjct: 278 -----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL---T 327
Query: 347 KLEIMFLFNN 356
           KL+ +F +NN
Sbjct: 328 KLQRLFFYNN 337

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           +V  L  +R+ G   + G+  L NL ++N + N+   + P  L NLT L  + +++N+++
Sbjct: 42  QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
              PL   ANLT+L  L+LF+N   +  PL  L N +RLE+
Sbjct: 99  DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           LQ  +F       K L NL  LE LD+S N+++   ++  + +L++L+  N   N+   +
Sbjct: 153 LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 209
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
            P  L  LT L  L L+ N+L     +  +A+LT+L  L L +N      PLS L   + 
Sbjct: 210 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
           L++   Q+S +       P      L  L L    +    P  +    +  Y+ L  NN+
Sbjct: 265 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
            D  P   L   TKL+ +F  NN
Sbjct: 317 SDISPVSSL---TKLQRLFFSNN 336

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 111/261 (42%), Gaps = 44/261 (16%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD-GLLPQCLSNLTYLRV 228
           GLV L  L+ L LS N+   +L      +  +L  L+I  N     L   CL NL  LR 
Sbjct: 296 GLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 229 LDLSSNKLSG----NLPLSVIANLTSL-----EYLSLFDNHFQESFPLSVLANHSRLEVF 279
           LDLS + +      NL L  +++L SL     E LSL    F+E   L +L         
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD-------L 407
Query: 280 QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPT 339
             +RL+V+    P+     LKVLNL H                   +D+S   L D  P 
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSH-----------------SLLDISSEQLFDGLPA 450
Query: 340 WLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF--IGKLPENFGLILPELV 397
             LQ+     +    N+F  GN+Q  NS + L  L I   SF  +  + ++    L  + 
Sbjct: 451 --LQH-----LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503
Query: 398 YLDMSQNSFEGSIPPSMGYME 418
           ++D+S N    S   ++ +++
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK 524

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 123/322 (38%), Gaps = 64/322 (19%)
Query: 85  FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPX 144
           F  I+ + F  F +L  LDL+    +G          + L  LK L +  N F++     
Sbjct: 263 FSDISSTTFQCFTQLQELDLTATHLKGLPSGM-----KGLNLLKKLVLSVNHFDQLCQIS 317
Query: 145 XXXXXXXXXXFLQGNSFSEGFKHNKG-LVNLRNLEVLDLSGNRITGS-LIMQGICDLKNL 202
                     +++GN   +      G L  L NL+ LDLS N I  S      + +L +L
Sbjct: 318 AANFPSLTHLYIRGNV--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS------------------- 243
             LN++ NE  GL  Q       L +LDL+  +L  N P S                   
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
Query: 244 -----VIANLTSLEYLSLFDNHFQES--FPLSVLANHSRLEVFQLSR---LQVETENFPW 293
                ++A L  L +L+L  NHFQ+      ++L     LEV  LS    L ++ + F  
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS 495
Query: 294 LPKF-------------------QLK--VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
           L K                     LK   LNL   +I+   PR L        I+LS N 
Sbjct: 496 LGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNP 555
Query: 333 LVDT-----FPTWLLQNNTKLE 349
           L  T     F TW  +N  KLE
Sbjct: 556 LDCTCSNIHFLTWYKENLHKLE 577

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 188 TGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIAN 247
           TG   ++G+  L NL+ L + +N+   L P  L NLT +  L+LS N L     +S IA 
Sbjct: 51  TGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---VSAIAG 105
Query: 248 LTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHC 307
           L S++ L L      +  PL+ L+N   L+V  L   Q+ T   P      L+ L++ + 
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQI-TNISPLAGLTNLQYLSIGNA 161
Query: 308 NISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQN 344
            +S   P  L        +   DN + D  P   L N
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISPLASLPN 196

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
            +LDL  NRI  +L         +L EL +NEN    + P   +NL  LR L L SN+L 
Sbjct: 35  RLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 238 GNLPLSVIANLTSLEYLS--------LFDNHFQESFPLS---------VLANHSRLEVF- 279
             +PL V   L++L  L         L D  FQ+ + L          V  +H       
Sbjct: 94  L-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 280 QLSRLQVETENFPWLPKFQLK------VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
            L +L +E  N   +P   L       VL LRH NI+       +  Y  + +++S    
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 334 VDTF 337
           +DT 
Sbjct: 213 LDTM 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	844
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-174
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  521 bits (1345), Expect = e-174
 Identities = 225/856 (26%), Positives = 339/856 (39%), Gaps = 132/856 (15%)

Query: 6   HAPKSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRV 65
            +P   L  E   L+  K  +           +L  W  +   + CT++ + C     +V
Sbjct: 4   ASPSQSLYREIHQLISFKDVLPD-------KNLLPDW--SSNKNPCTFDGVTCR--DDKV 52

Query: 66  MELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTS---- 121
             + L S        +N GF  ++ SL      L  L LS++   G       + S    
Sbjct: 53  TSIDLSSK------PLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVSGFKCSASLTSL 105

Query: 122 -----------------RSLKQLKILNIGYNSFNESL-VPLLTSLTSLTSLFLQGNSFS- 162
                             S   LK LN+  N+ +    V     L SL  L L  NS S 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 163 EGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSN 222
                         L+ L +SGN+I+G +    +    NL  L+++ N F   +P  L +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGD 221

Query: 223 LTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS 282
            + L+ LD+S NKLSG+   + I+  T L+ L++  N F    P   L     L+   L+
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLA 277

Query: 283 RLQVETENFPWLPKF--QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTW 340
             +   E   +L      L  L+L   +  G +P F         + LS NN     P  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 341 LLQNNTKLEIMFLFNNFLTGNL--QLPNSKRNLPHLVISNNSFIGKLPENFG-LILPELV 397
            L     L+++ L  N  +G L   L N   +L  L +S+N+F G +  N        L 
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 398 YLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457
            L +  N F G IPP++     L+ L LS N  S  +P   L S   L  + L  N  +G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEG 456

Query: 458 QIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNL 517
           +I  + M +  L  L L+ N  TG +  GL N ++L  + +SNN L+G++P+WIG+  NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 518 DVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT 577
            +L +S NSF G++  +L +      LD++                        N  +GT
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLN-----------------------TNLFNGT 553

Query: 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN--NLQGNIPEPLCHLRK 635
           IP A+ + S      +  N  +G     I  D   +     GN    QG   E L  L  
Sbjct: 554 IPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 636 LAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
               +I+     G     F N                                       
Sbjct: 610 RNPCNITSRVYGGHTSPTFDN--------------------------------------- 630

Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
                       M  LD+S N L+G IP EIG +  +  LNL +N +SGSIP    +L+ 
Sbjct: 631 ---------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
              +DLS NKL+G+IP  +  L+ L   ++S NNLSG +P  GQF  F  + +  NP LC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

Query: 816 GPAVRKNCSSELPPTP 831
           G  + +   S      
Sbjct: 742 GYPLPRCDPSNADGYA 757

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  283 bits (725), Expect = 2e-84
 Identities = 143/739 (19%), Positives = 235/739 (31%), Gaps = 116/739 (15%)

Query: 98  ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQ 157
              V D S  +     ++           + +LN+ +N          T  + LTSL + 
Sbjct: 5   SHEVADCSHLKLTQVPDD-------LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 158 GNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP 217
            N+ S+     +    L  L+VL+L  N ++  L  +      NL EL++  N    +  
Sbjct: 58  FNTISK--LEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 218 QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLE 277
                   L  LDLS N LS    L     L +L+ L L +N  Q               
Sbjct: 115 NPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQA-------------- 159

Query: 278 VFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337
                   +++E         LK L L    I    P           + L++  L  + 
Sbjct: 160 --------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 338 PTWLLQ--NNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
              L     NT +  + L N+ L+                 SN +F        GL    
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLST---------------TSNTTF-------LGLKWTN 249

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
           L  LD+S N+       S  ++ +L +  L  NN    L  H L    ++ ++NL  ++ 
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFT 308

Query: 456 DGQIFPKYM---------NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ 506
              I    +          L  L  L + DN   G          +L  L +SN+  S +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 507 LPR----WIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS--SN 560
                       S L +L +++N      S   S L    +LD+  N++   L       
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLR 618
             ++  ++   N       N+      L  L LR        +         NL  L L 
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 619 GNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAE 678
            NN+     + L  L KL I+D+ +N L            ++  KG              
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG-------------- 534

Query: 679 DNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS 738
                                     L ++  L+L SN            L E+  ++L 
Sbjct: 535 --------------------------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 739 NNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE-LSFLAIFNVSYNNLSGTVPNK 797
            N L+      F+N    +S++L  N +        G     L   ++ +N    T  + 
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 798 GQFANFDESNYRGNPYLCG 816
             F N+    +   P L  
Sbjct: 629 AWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  262 bits (672), Expect = 5e-77
 Identities = 124/592 (20%), Positives = 208/592 (35%), Gaps = 46/592 (7%)

Query: 85  FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPL 144
              +  + F  + +L  LD+  N     E        + L  LK+LN+ +N  ++     
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKT 92

Query: 145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
               T+LT L L  NS  +    N   V  +NL  LDLS N ++ S  +     L+NL E
Sbjct: 93  FAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQE 149

Query: 205 LNINENEFDGLLPQCLS--NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
           L ++ N+   L  + L     + L+ L+LSSN++           +  L  L L +    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLG 208

Query: 263 ESFP--LSVLANHSRLEVFQLSRLQVETEN---FPWLPKFQLKVLNLRHCNISGTIPRFL 317
            S    L +   ++ +    LS  Q+ T +   F  L    L +L+L + N++       
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
            +     Y  L  NN+   F    L     +  + L  +F   ++              S
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSI--------------S 313

Query: 378 NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFS-RDLPK 436
             S       +F   L  L +L+M  N   G        +  L +L LS++  S R L  
Sbjct: 314 LASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 437 HFLTSCV--SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSL 493
               S     L  +NL+ N         +  L  L  L L  N+    L         ++
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG--DVSVQLSNLEVARILDISENKL 551
           + + +S N              +L  L++ R + +           L    ILD+S N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 552 YG-PLEFSSNHSSLRYLFPHNNSLS--------GTIPNALLQSSQLTTLDLRDNEFSGNI 602
                +       L  L   +N+L+        G     L   S L  L+L  N F    
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCF 654
             +  +   L+ + L  NNL         +   L  +++  N +       F
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (534), Expect = 7e-58
 Identities = 113/606 (18%), Positives = 204/606 (33%), Gaps = 64/606 (10%)

Query: 224 TYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR 283
               V D S  KL+  +P  +    T++  L+L  N  +   P +    +S+L    +  
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGF 58

Query: 284 ---LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTW 340
               ++E E    LP   LKVLNL+H  +S    +   +  +   + L  N++       
Sbjct: 59  NTISKLEPELCQKLP--MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNN 115

Query: 341 LLQNNTKLEIMFLFNNFLTG-NLQLPNSKRNLPHLVISNNSFIGKLPENFG-LILPELVY 398
                  L  + L +N L+   L       NL  L++SNN       E         L  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 399 LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT--SCVSLEFMNLSHNYFD 456
           L++S N  +   P     + RL  L L++      L +      +  S+  ++LS++   
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 457 GQIFP--KYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKF 514
                    +    L  L L+ N               L    +  N +       +   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 515 SNLDVLLMSRNSFEGDVSVQ---------LSNLEVARILDISENKLYGPLEFS-SNHSSL 564
            N+  L + R+  +  +S+             L+    L++ +N + G      +   +L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 565 RYLFPHNNSLSGTIPNAL----LQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620
           +YL   N+  S           L  S L  L+L  N+ S   +   +   +L  L L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 621 NLQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNI-SLWMEKGNYYNSTLSLALPAE 678
            +   +  +    L  +  + +SYN       + F  + SL           L L     
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL---------QRLMLR---- 462

Query: 679 DNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS 738
                +                    L+ +T LDLS+N +       +  L ++  L+L 
Sbjct: 463 RVALKNVDSSPSPFQP----------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 739 NNFLS--------GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNL 790
           +N L+        G        L     ++L  N  +        +L  L I ++  NNL
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 791 SGTVPN 796
           +    +
Sbjct: 573 NTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (525), Expect = 1e-56
 Identities = 94/533 (17%), Positives = 168/533 (31%), Gaps = 72/533 (13%)

Query: 98  ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT---SLTSLTSL 154
            L  L+LS N+ + +          ++ +L  L +       SL   L    + TS+ +L
Sbjct: 172 SLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG 214
            L  +  S         +   NL +LDLS N +   +       L  L    +  N    
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNL--------PLSVIANLTSLEYLSLFDNHFQESFP 266
           L    L  L  +R L+L  +    ++               L  LE+L++ DN       
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIK 345

Query: 267 LSVLANHSRLEVFQLSR-----LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
            ++      L+   LS        +  E F  L    L +LNL    IS        +  
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
               +DL  N +         +    +  ++L  N                   ++ NSF
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ---------------LTRNSF 450

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEG--SIPPSMGYMERLLFLDLSSNNFSRDLPKHFL 439
                      +P L  L + + + +   S P     +  L  LDLS+NN + ++    L
Sbjct: 451 AL---------VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDML 500

Query: 440 TSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVS 499
                LE ++L HN                    L  +   G     L   S L++L++ 
Sbjct: 501 EGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 500 NNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLEF 557
           +N               L ++ +  N+     +   +N    + L++ +N +       F
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 558 SSNHSSLRYLFPHNNSLSGTIPN-----ALLQSSQLTTLDLRDNEFSGNIAHL 605
                +L  L    N    T  +       +  +     +L  +       H 
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY 657

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  167 bits (425), Expect = 2e-43
 Identities = 74/410 (18%), Positives = 135/410 (32%), Gaps = 44/410 (10%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP---- 143
           +    F    +L    L  N  +    +    +   L  ++ LN+  +   +S+      
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSH----SLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 144 -----LLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD 198
                    L  L  L ++ N        +     L NL+ L LS +  +   +      
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGI--KSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 199 ---LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255
                 L  LN+ +N+   +     S L +L VLDL  N++   L       L ++  + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 256 LFDNHFQESFPLSVLANHSRLEVFQLS--RLQVETENFPWLPKF-QLKVLNLRHCNISGT 312
           L  N + +    +  A    L+   L    L+    +         L +L+L + NI+  
Sbjct: 437 LSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 313 IPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLP 372
               L+       +DL  NNL       L ++      ++                 +L 
Sbjct: 496 NDDMLEGLEKLEILDLQHNNL-----ARLWKHANPGGPIYFLKGL-----------SHLH 539

Query: 373 HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR 432
            L + +N F     E F   L EL  +D+  N+              L  L+L  N  + 
Sbjct: 540 ILNLESNGFDEIPVEVFK-DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 433 DLPKHFLTSCVSLEFMNLSHNYFDGQI-----FPKYMNLAKLVFLFLNDN 477
              K F  +  +L  +++  N FD        F  ++N        L+ +
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (362), Expect = 1e-35
 Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 24/315 (7%)

Query: 85  FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPL 144
            P I+   F   + L  L++ DN   G + N        L  LK L++  +  +   +  
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 145 LT----SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLK 200
            T    + + L  L L  N  S+    +     L +LEVLDL  N I   L  Q    L+
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFDN 259
           N+ E+ ++ N++  L     + +  L+ L L    L   +   S    L +L  L L +N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 260 HFQESFPLSVLANHSRLEVF-----QLSRLQVETENFPWLPKF----QLKVLNLRHCNIS 310
           +   +    +L    +LE+       L+RL         +        L +LNL      
Sbjct: 491 NI-ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 311 GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG--NLQLPNSK 368
                  +  ++ + IDL  NNL +T P  +  N   L+ + L  N +T         + 
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 369 RNLPHLVISNNSFIG 383
           RNL  L +  N F  
Sbjct: 609 RNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 1e-17
 Identities = 43/238 (18%), Positives = 74/238 (31%), Gaps = 53/238 (22%)

Query: 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620
             S       +  L+  +P+ L   + +T L+L  N+     A      S L +L +  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN 680
            +    PE    L  L ++++ +N L+      F                          
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF------------------------ 95

Query: 681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNN 740
                                      +T L L SN +     +       +  L+LS+N
Sbjct: 96  ------------------------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 741 FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELG--ELSFLAIFNVSYNNLSGTVPN 796
            LS +   +   L+  + + LS NK+      EL     S L    +S N +    P 
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  229 bits (587), Expect = 1e-65
 Identities = 112/653 (17%), Positives = 199/653 (30%), Gaps = 99/653 (15%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
            K L++ +N           S   L  L L           +    +L +L  L L+GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNP 87

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA 246
           I   L +     L +L +L   E     L    + +L  L+ L+++ N +         +
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRH 306
           NLT+LE+L L  N  Q  +  + L    ++ +  LS                   L+L  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS-------------------LDLSL 186

Query: 307 CNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQL-- 364
             ++   P   +       + L +N          +Q    LE+  L          L  
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 365 --PNSKRNLPHLVISNNS------FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY 416
              ++   L +L I          ++  + + F   L  +    +   + E     S  Y
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFS--Y 302

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
                 L+L +  F +  P   L S   L F +              ++L  L FL L+ 
Sbjct: 303 NFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSR 356

Query: 477 NQ--FTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ 534
           N   F G         +SL  LD+S N +   +         L+ L    ++ +      
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 535 -LSNLEVARILDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTL 591
              +L     LDIS            +  SSL  L    NS        +      LT L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 592 DLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP 651
           DL   +         N  S+L+ L +  NN       P   L  L ++D S N +     
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 652 SCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGL 711
               +                                                   +  L
Sbjct: 536 QELQHF-----------------------------------------------PSSLAFL 548

Query: 712 DLSSNELTGDIPSE--IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS 762
           +L+ N+       +  + ++ +   L +    +  + P     + +  S++++
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (579), Expect = 1e-64
 Identities = 115/565 (20%), Positives = 206/565 (36%), Gaps = 40/565 (7%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +    F  F EL VLDLS    +  E+       +SL  L  L +  N      +   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           L+SL  L     + +     N  + +L+ L+ L+++ N I    + +   +L NL  L++
Sbjct: 99  LSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 208 NENEFDGLLPQCLSNLTYLRV----LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           + N+   +    L  L  + +    LDLS N ++  +       +  L  L+L +N    
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETEN---------FPWLPKFQLKVLNLRHCNIS-GTI 313
           +   + +   + LEV +L   +   E             L    ++   L + +     I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 314 PRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPH 373
                   +     L    +           N   + + L N             ++L  
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP--TLKLKSLKR 329

Query: 374 LVISNNSFIGKLPENFGLILPELVYLDMSQN--SFEGSIPPSMGYMERLLFLDLSSNNFS 431
           L  ++N       E     LP L +LD+S+N  SF+G    S      L +LDLS N   
Sbjct: 330 LTFTSNKGGNAFSEVD---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 432 RDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY-MNLAKLVFLFLNDNQFTGRLEVGLLNA 490
             +  +FL     LE ++  H+           ++L  L++L ++               
Sbjct: 387 -TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 491 SSLYVLDVSNNMLSGQL-PRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN 549
           SSL VL ++ N       P    +  NL  L +S+   E       ++L   ++L++S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 550 KLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFSGNIAH--L 605
             +    F     +SL+ L    N +  +    L    S L  L+L  N+F+    H   
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

Query: 606 INEDSNLRALLLRGNNLQGNIPEPL 630
           +    + R LL+    ++   P   
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (563), Expect = 2e-62
 Identities = 110/638 (17%), Positives = 186/638 (29%), Gaps = 118/638 (18%)

Query: 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
            + + LDLS N +   L          L  L+++  E   +      +L++L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWL 294
            +   L L   + L+SL+ L   + +                                 L
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFP----------------------IGHL 123

Query: 295 PKFQLKVLNLRHCNI-SGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL 353
               LK LN+ H  I S  +P +     +  ++DLS N +   + T L            
Sbjct: 124 KT--LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV---------- 171

Query: 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS 413
                     L         L +S N      P  F  I   L  L +  N    ++  +
Sbjct: 172 ----------LHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKT 219

Query: 414 MGY-MERLLFLDLSSNNFS-----RDLPKHFLTSCVSLEFMNLSHNYFD---GQIFPKYM 464
               +  L    L    F          K  L    +L        Y D     I   + 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
            L  +    L         +           L++ N          +     L       
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYG---PLEFSSNHSSLRYLFPHNNSLSGTIPNA 581
            +   +V   L +LE    LD+S N L       +     +SL+YL    N +  T+ + 
Sbjct: 338 GNAFSEVD--LPSLEF---LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 582 LLQSSQLTTLDLRDNEFSGNIAHLINED-SNLRALLLRGNNLQGNIPEPLCHLRKLAIVD 640
            L   QL  LD + +         +     NL  L +   + +         L  L ++ 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 641 ISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESY 700
           ++ N+                                                       
Sbjct: 452 MAGNSFQENFLPDIFT-------------------------------------------- 467

Query: 701 KGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD 760
               L+ +T LDLS  +L    P+    L  +  LN+S+N         +  L   + +D
Sbjct: 468 ---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 761 LSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNK 797
            S N +      EL    S LA  N++ N+ + T  ++
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (477), Expect = 1e-50
 Identities = 88/517 (17%), Positives = 164/517 (31%), Gaps = 49/517 (9%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
                 + L  L+++ N  + ++  + ++   +L  L+ L++  N         L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 151 LT----SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           +     SL L  N  +       G      L  L L  N  + +++   I  L  L    
Sbjct: 175 MPLLNLSLDLSLNPMN---FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 207 INENEFDG------LLPQCLSNLTYLRV--LDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
           +   EF             L  L  L +    L+      +  + +   LT++   SL  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQ 318
              +     S    +   +  +L   +        L   +     L   +  G       
Sbjct: 292 VTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLK----RLTFTSNKGGNAFSEV 344

Query: 319 YQYDFRYIDLSDNNLVDT-FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
                 ++DLS N L      +      T L+ + L  N +            L HL   
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 378 NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
           +++       +  L L  L+YLD+S      +       +  L  L ++ N+F  +    
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 438 FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497
             T   +L F++LS    +      + +L+ L  L ++ N F           +SL VLD
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 498 VSNNMLSGQLPRWIGK-FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLE 556
            S N +     + +    S+L  L +++N F      Q                      
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ---------------------S 563

Query: 557 FSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593
           F       R L      +    P+   Q   + +L++
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPSD-KQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (392), Expect = 1e-39
 Identities = 74/423 (17%), Positives = 135/423 (31%), Gaps = 27/423 (6%)

Query: 392 ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLS 451
           +      LD+S N        S      L  LDLS       +      S   L  + L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 452 HNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML-SGQLPRW 510
            N         +  L+ L  L   +          + +  +L  L+V++N++ S +LP +
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLE----VARILDISENKLYGPLEFSSNHSSLRY 566
               +NL+ L +S N  +      L  L     +   LD+S N +      +     L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 567 LFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFSGNIAHLINEDSNLRAL---------L 616
           L   NN  S  +    +Q  + L    L   EF         + S L  L         L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 617 LRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALP 676
              +    +I +    L  ++   +   T+       + N          +   ++    
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGW------QHLELVNCKFG 317

Query: 677 AEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT--GDIPSEIGYLGEIHA 734
                +      + F +     ++    L  +  LDLS N L+  G           +  
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 735 LNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGT 793
           L+LS N +   +  +F  L+  E +D  ++ L           L  L   ++S+ +    
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 794 VPN 796
              
Sbjct: 437 FNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  142 bits (359), Expect = 2e-35
 Identities = 68/353 (19%), Positives = 125/353 (35%), Gaps = 27/353 (7%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESL 141
            D +    + LF     +    L     E   ++ +YN        + L +    F +  
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFG-----WQHLELVNCKFGQFP 320

Query: 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGS-LIMQGICDLK 200
              L SL  LT    +G +           V+L +LE LDLS N ++      Q      
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +L  L+++ N     +      L  L  LD   + L      SV  +L +L YL +   H
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 261 FQESFPLSVLANHSRLEVFQLSR----LQVETENFPWLPKFQLKVLNLRHCNISGTIPRF 316
            + +F   +    S LEV +++          + F  L    L  L+L  C +    P  
Sbjct: 433 TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--NLTFLDLSQCQLEQLSPTA 489

Query: 317 LQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG--NLQLPNSKRNLPHL 374
                  + +++S NN          +    L+++    N +      +L +   +L  L
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 375 VISNNSFIGKLP-ENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLS 426
            ++ N F      ++F   + +   L +     E + P        +L L+++
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ-GMPVLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (551), Expect = 1e-60
 Identities = 88/622 (14%), Positives = 180/622 (28%), Gaps = 104/622 (16%)

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV---IANLTSLEYL 254
               +  L++      G +P  +  LT L VL L S+    N  L     I+   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
                H+Q++F                       +  P      L    +       +I 
Sbjct: 139 QKMRMHYQKTFV----------------------DYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 315 RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHL 374
           +  +       I    NN+       ++   TKL   ++ N+         N      + 
Sbjct: 177 KSSRITLKDTQIGQLSNNI-TFVSKAVM-RLTKLRQFYMGNSPFVA----ENICEAWENE 230

Query: 375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFS--R 432
                         +   L +L  +++        +P  +  +  +  ++++ N      
Sbjct: 231 NSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 433 DLPKHF-----LTSCVSLEFMNLSHNYF-DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVG 486
            L   +           ++ + + +N      +      + KL  L    NQ  G+L   
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348

Query: 487 LLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILD 545
             +   L  L+++ N ++     + G    ++ L  + N  +         ++ V   +D
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 546 ISENKLYGPL--------EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
            S N++                   ++  +   NN +S          S L++++L  N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 598 FSG---NIAHLINED----SNLRALLLRGNNLQGNIPE-PLCHLRKLAIVDISYNTLNGP 649
            +    N     NE+      L ++ LR N L     +     L  L  +D+SYN+ +  
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527

Query: 650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT 709
            P+   N S           TL                                      
Sbjct: 528 FPTQPLNSS-----------TLK-------------------------------GFGIRN 545

Query: 710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ 769
             D   N    + P  I     +  L + +N +     +   N+     +D+  N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISI 602

Query: 770 IPPELGELSFLAIFNVSYNNLS 791
               +       ++ + Y+   
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (539), Expect = 8e-59
 Identities = 87/563 (15%), Positives = 187/563 (33%), Gaps = 61/563 (10%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHN--KGLVNLRNLEVL 180
           S  ++  L++     +  +   +  LT L  L L  +      +    KG+    + E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 181 DLSGNRITGSLIMQ-GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN 239
                    + +      D  +L++  IN +     + +          +   SN ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 240 LPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQL 299
           +  + +  LT L    + ++ F          N +     Q     ++ +N        L
Sbjct: 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-----DL 251

Query: 300 KVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT 359
             + + +C     +P FL+   + + I+++ N                 E +      L 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG------------ISGEQLKDDWQALA 299

Query: 360 GNLQLPNSKRNLPHLVISNNSFI-GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
                      +  + I  N+     +  +    + +L  L+   N  EG   P+ G   
Sbjct: 300 DAPVG----EKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEG-KLPAFGSEI 353

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM---NLAKLVFLFLN 475
           +L  L+L+ N  + ++P +F      +E ++ +HN    +  P      +++ +  +  +
Sbjct: 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL--KYIPNIFDAKSVSVMSAIDFS 410

Query: 476 DNQFTG-------RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528
            N+           L+       ++  +++SNN +S          S L  + +  N   
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 529 G-------DVSVQLSNLEVARILDISENKLYG-PLEFS-SNHSSLRYLFPHNNSLSGTIP 579
                   D +    N  +   +D+  NKL     +F  +    L  +    NS S   P
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP 529

Query: 580 NALLQSSQLTTLDLRD------NEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
              L SS L    +R+      N         I    +L  L +  N+++  + E +   
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--T 586

Query: 634 RKLAIVDISYNTLNGPIPSCFTN 656
             ++++DI  N       S    
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (516), Expect = 9e-56
 Identities = 77/555 (13%), Positives = 163/555 (29%), Gaps = 63/555 (11%)

Query: 97  QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFL 156
            EL VL L  +  +  E         +    +        + ++ V           +  
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 157 QGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL 216
             NS  +     K          +    N IT   + + +  L  L +  +  + F    
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 217 PQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRL 276
                        +    +      L    NL  L  + +++       P   L     +
Sbjct: 223 ICEAWEN-----ENSEYAQQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEM 275

Query: 277 EVFQLSR-----LQVETENFPWLPKF----QLKVLNLRHCNI-SGTIPRFLQYQYDFRYI 326
           ++  ++       +   +++  L       +++++ + + N+ +  +   LQ       +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG-NLQLPNSKRNLPHLVISNNSFIGKL 385
           +   N L    P     +  KL  + L  N +T            + +L  ++N  +  +
Sbjct: 336 ECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYI 392

Query: 386 PENFGLI-LPELVYLDMSQNSFEG-------SIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
           P  F    +  +  +D S N            + P+      +  ++LS+N  S+  PK 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKE 451

Query: 438 FLTSCVSLEFMNLSHNYFDG-------QIFPKYMNLAKLVFLFLNDNQFTG-RLEVGLLN 489
             ++   L  +NL  N                + N   L  + L  N+ T    +     
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 490 ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN 549
              L  +D+S N  S   P      S L    +                      D   N
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGN 552

Query: 550 KLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE 608
           +         +   SL  L   +N +   +   +  +  ++ LD++DN         +  
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPN--ISVLDIKDNPNISIDLSYVCP 609

Query: 609 DSNLRALLLRGNNLQ 623
                  +L  +  Q
Sbjct: 610 YIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 5e-42
 Identities = 66/491 (13%), Positives = 145/491 (29%), Gaps = 94/491 (19%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN--LQLPNSKRNLPHLVISNNSF 381
             + L         P   +   T+LE++ L ++    N  L  P                
Sbjct: 84  TGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 382 IG----KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
           +      +  +      +L+   ++ +  + SI  S     +   +   SNN +  + K 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK- 200

Query: 438 FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497
            +     L    + ++ F  +   +               Q     ++   N   L  ++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557
           V N     +LP ++     + ++ ++ N       ++                    L  
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA---------------LAD 300

Query: 558 SSNHSSLRYLFPHNNSL-SGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALL 616
           +     ++ ++   N+L +  +  +L +  +L  L+   N+  G +    +E   L +L 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE-IKLASLN 359

Query: 617 LRGNNLQGNIPEPLC-HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLAL 675
           L  N +   IP   C    ++  +  ++N L          I    +  +          
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKL--------KYIPNIFDAKS---------- 400

Query: 676 PAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-------DIPSEIGY 728
                                        +  M+ +D S NE+          +      
Sbjct: 401 -----------------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 729 LGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG-------QIPPELGELSFLA 781
              + ++NLSNN +S      FS      S++L  N L                    L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 782 IFNVSYNNLSG 792
             ++ +N L+ 
Sbjct: 492 SIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  143 bits (362), Expect = 1e-35
 Identities = 50/410 (12%), Positives = 119/410 (29%), Gaps = 81/410 (19%)

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHF---LTSCVSLEFMNLSH 452
           +  L +      G +P ++G +  L  L L S+    +        +++ +S E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 453 NYFDGQIFPK--YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW 510
            ++           + + L+   +N +     ++           +   +N ++  + + 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS-SNHSSLRYLFP 569
           + + + L    M  + F  +   +          +    + Y   +    N   L  +  
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 570 HNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP 629
           +N      +P  L    ++  +++  N                                 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGIS----------------GEQLKDDWQALAD 300

Query: 630 LCHLRKLAIVDISYNTL-NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE 688
                K+ I+ I YN L   P+ +                                    
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQK-------------------------------- 328

Query: 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR 748
                           +K +  L+   N+L G      G   ++ +LNL+ N ++     
Sbjct: 329 ----------------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 749 SFSNLKMTESMDLSYNKLNGQIPP--ELGELSFLAIFNVSYNNLSGTVPN 796
                +  E++  ++NKL   IP   +   +S ++  + SYN +      
Sbjct: 372 FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (322), Expect = 1e-30
 Identities = 65/356 (18%), Positives = 122/356 (34%), Gaps = 45/356 (12%)

Query: 89  NMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSL 148
            ++     +++ ++ +  N  + +    +    + +K+L +L   YN   E  +P   S 
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLGMLECLYNQL-EGKLPAFGSE 352

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
             L SL L  N  +E   +  G      +E L  + N++     +     +  +  ++ +
Sbjct: 353 IKLASLNLAYNQITEIPANFCG--FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 209 ENEFDGL-------LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
            NE   +       L         +  ++LS+N++S   P  + +  + L  ++L  N  
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNML 469

Query: 262 QESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ- 320
            E     +  N  + E                     L  ++LR   ++     F     
Sbjct: 470 TE-----IPKNSLKDENENFKNTY------------LLTSIDLRFNKLTKLSDDFRATTL 512

Query: 321 YDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF-LTGNLQ---LPNSKRNLPHLV- 375
                IDLS N+    FPT  L N++ L+   + N     GN      P      P L  
Sbjct: 513 PYLVGIDLSYNSF-SKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 376 --ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNN 429
             I +N  I K+ E    I P +  LD+  N         +          L  + 
Sbjct: 571 LQIGSND-IRKVNEK---ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 2e-29
 Identities = 41/348 (11%), Positives = 102/348 (29%), Gaps = 71/348 (20%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVL 520
           +  ++  L L     +GR+   +   + L VL + ++          P+ I    + +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 521 LMSRNSFEGDVSVQLSNLEVARI--LDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGT 577
              R  ++          + + +    I+ +     ++ S         +   +N+++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA 637
           +  A+++ ++L    + ++ F        N                        +L+ L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVA-----ENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 638 IVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY 697
            V++        +P+                                             
Sbjct: 253 DVEVYNCPNLTKLPTFLKA----------------------------------------- 271

Query: 698 ESYKGDVLKYMTGLDLSSNELT--------GDIPSEIGYLGEIHALNLS-NNFLSGSIPR 748
                  L  M  ++++ N               ++     +I  + +  NN  +  +  
Sbjct: 272 -------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 749 SFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796
           S   +K    ++  YN+L G   P  G    LA  N++YN ++    N
Sbjct: 325 SLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (300), Expect = 6e-28
 Identities = 45/330 (13%), Positives = 97/330 (29%), Gaps = 60/330 (18%)

Query: 477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS 536
           + +  +  V L +   +  L +     SG++P  IG+ + L+VL +  +  + +      
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER---- 122

Query: 537 NLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLR 594
                         L+GP   S+N  S             T  +       S L    + 
Sbjct: 123 --------------LFGPKGISAN-MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 595 DNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCF 654
            +    +I            +    NN+   + + +  L KL    +  +          
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 655 TNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLS 714
                     N   +        + +                        LK +T +++ 
Sbjct: 227 WENE------NSEYAQQYKTEDLKWDN-----------------------LKDLTDVEVY 257

Query: 715 SNELTGDIPSEIGYLGEIHALNLSNNFL--------SGSIPRSFSNLKMTESMDLSYNKL 766
           +      +P+ +  L E+  +N++ N                     +  + + + YN L
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 767 -NGQIPPELGELSFLAIFNVSYNNLSGTVP 795
               +   L ++  L +    YN L G +P
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.6 bits (246), Expect = 2e-21
 Identities = 32/253 (12%), Positives = 69/253 (27%), Gaps = 36/253 (14%)

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRA 614
           +++  +  L       SG +P+A+ Q ++L  L L  +    N        I+ + +   
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 615 LLLRGNNLQGNIPE--PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLS 672
                 + Q    +  P      L    I+ +     I           + G   N+   
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 673 LALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEI 732
           +       R                       L  +    + ++    +   E       
Sbjct: 198 V--SKAVMR-----------------------LTKLRQFYMGNSPFVAENICEAWEN--- 229

Query: 733 HALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792
              N        +    + NLK    +++       ++P  L  L  + + NV+ N    
Sbjct: 230 --ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 793 TVPNKGQFANFDE 805
               K  +    +
Sbjct: 288 GEQLKDDWQALAD 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (527), Expect = 2e-60
 Identities = 89/326 (27%), Positives = 125/326 (38%), Gaps = 55/326 (16%)

Query: 496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV--QLSNLEVARILDIS-ENKLY 552
            D  N    G L     +   ++ L +S  +      +   L+NL     L I   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 553 GPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSN 611
           GP+  + +  + L YL+  + ++SG IP+ L Q   L TLD   N  SG +   I+   N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 612 LRALLLRGNNLQGNIPEPLCHLRKLAIV-DISYNTLNGPIPSCFTNISLWMEKGNYYNST 670
           L  +   GN + G IP+      KL     IS N L G IP  F N++L           
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL----------- 199

Query: 671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG 730
                                                   +DLS N L GD     G   
Sbjct: 200 --------------------------------------AFVDLSRNMLEGDASVLFGSDK 221

Query: 731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNL 790
               ++L+ N L+  +       K    +DL  N++ G +P  L +L FL   NVS+NNL
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 791 SGTVPNKGQFANFDESNYRGNPYLCG 816
            G +P  G    FD S Y  N  LCG
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (425), Expect = 2e-46
 Identities = 71/313 (22%), Positives = 119/313 (38%), Gaps = 38/313 (12%)

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI----SNNSF 381
            D  +   +            ++  + L    L     +P+S  NLP+L        N+ 
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
           +G +P      L +L YL ++  +  G+IP  +  ++ L+ LD S N  S  LP   ++S
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISS 147

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLV-FLFLNDNQFTGRL--EVGLLNASSLYVLDV 498
             +L  +    N   G I   Y + +KL   + ++ N+ TG++      LN   L  +D+
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDL 204

Query: 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
           S NML G      G   N   + +++NS   D+  ++   +    LD+            
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR----------- 252

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLR 618
                       NN + GT+P  L Q   L +L++  N   G I    N           
Sbjct: 253 ------------NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVSAYA 299

Query: 619 GNNLQGNIPEPLC 631
            N      P P C
Sbjct: 300 NNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 2e-45
 Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 4/257 (1%)

Query: 399 LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLP-KHFLTSCVSLEFMNLSH-NYFD 456
            D    ++ G +  +     R+  LDLS  N  +  P    L +   L F+ +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 457 GQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSN 516
           G I P    L +L +L++     +G +   L    +L  LD S N LSG LP  I    N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 517 LDVLLMSRNSFEGDVSVQLSNL-EVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS 575
           L  +    N   G +     +  ++   + IS N+L G +  +  + +L ++    N L 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 635
           G              + L  N  + ++  +     NL  L LR N + G +P+ L  L+ 
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 636 LAIVDISYNTLNGPIPS 652
           L  +++S+N L G IP 
Sbjct: 270 LHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (350), Expect = 3e-36
 Identities = 81/423 (19%), Positives = 137/423 (32%), Gaps = 127/423 (30%)

Query: 11  CLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC--TWERIKCNATTGRVMEL 68
           C   ++  LL+IK  + +          L SW    T+DCC  TW  + C+  T      
Sbjct: 3   CNPQDKQALLQIKKDLGN-------PTTLSSW--LPTTDCCNRTWLGVLCDTDTQT---- 49

Query: 69  SLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLK 128
                                         ++ LDLS                       
Sbjct: 50  ----------------------------YRVNNLDLSGLNLPK----------------- 64

Query: 129 ILNIGYNSFNESLVPLLTSLTSLTSLFLQG-NSFSEGFKHNKGLVNLRNLEVLDLSGNRI 187
                       +   L +L  L  L++ G N+          +  L  L  L ++   +
Sbjct: 65  ---------PYPIPSSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNV 113

Query: 188 TGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIAN 247
           +G+ I   +  +K LV L+ + N   G LP  +S+L  L  +    N++SG +P S   +
Sbjct: 114 SGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGS 171

Query: 248 LTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHC 307
            + L                                                  + +   
Sbjct: 172 FSKL-----------------------------------------------FTSMTISRN 184

Query: 308 NISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNL-QLPN 366
            ++G IP       +  ++DLS N L          ++   + + L  N L  +L ++  
Sbjct: 185 RLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLS 426
           SK NL  L + NN   G LP+     L  L  L++S N+  G IP   G ++R      +
Sbjct: 243 SK-NLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299

Query: 427 SNN 429
           +N 
Sbjct: 300 NNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (299), Expect = 1e-29
 Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 54/221 (24%)

Query: 579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG--NIPEPLCHLRKL 636
           P  L  SS L T D  +  + G +     +   +  L L G NL     IP  L +L  L
Sbjct: 21  PTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 637 AIVDIS-YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
             + I   N L GPIP                                            
Sbjct: 79  NFLYIGGINNLVGPIPPAIAK--------------------------------------- 99

Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
                    L  +  L ++   ++G IP  +  +  +  L+ S N LSG++P S S+L  
Sbjct: 100 ---------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIF-NVSYNNLSGTVP 795
              +    N+++G IP   G  S L     +S N L+G +P
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 4e-60
 Identities = 97/526 (18%), Positives = 183/526 (34%), Gaps = 25/526 (4%)

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
             S   L    N        N     L NL  LDL+  +I   +          L  L +
Sbjct: 32  PNSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL 88

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N    +    LS    L+ L      +S  +    + N  +LE L L  NH   S  L
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS-SIKL 146

Query: 268 SVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
                  +L+V          +  E+   L +     LNL   +I+  I         F+
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQ 205

Query: 325 YIDLSDNNLVDTFPTWL----LQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNS 380
            ++      +      L    +Q+        + +  ++  +     + ++  + +  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 381 FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440
           F       F      L  LD++       +P  +  +  L  L LS+N F   L +   +
Sbjct: 266 FFNISSNTFHC-FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISAS 322

Query: 441 SCVSLEFMNLSHNYFDGQIFPKYM-NLAKLVFLFLNDNQFT--GRLEVGLLNASSLYVLD 497
           +  SL  +++  N    ++    + NL  L  L L+ +         + L N S L  L+
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILDISENKLYG-PL 555
           +S N           +   L++L ++    +  D      NL + ++L++S + L     
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 556 EFSSNHSSLRYLFPHNNSLSGTI---PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNL 612
           +      +L++L    N          N+L    +L  L L   + S    H       +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 613 RALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658
             + L  N L  +  E L HL+ +  ++++ N ++  +PS    +S
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  207 bits (530), Expect = 6e-58
 Identities = 113/576 (19%), Positives = 198/576 (34%), Gaps = 35/576 (6%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I  + F     L  LDL+  +     E+    T +S  +L  L +  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
             +L  LF      S        L N + LE L L  N I+ S+ +      + L  L+ 
Sbjct: 104 PKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDF 160

Query: 208 NENEFDGLLPQCLSNLTYLRV--LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF-QES 264
             N    L  + +S+L       L+L+ N ++G  P     +    + L+          
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLVI 218

Query: 265 FPLSVLANHSRLEVFQLSRLQVET---ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
           F     +    L +     +  E      F  L +  ++ +NL+                
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV---ISN 378
             + +DL+  +L +      L   + L+ + L  N          S  N P L    I  
Sbjct: 279 GLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENL--CQISASNFPSLTHLSIKG 334

Query: 379 NSFIGKLPENFGLILPELVYLDMSQNSFEGS--IPPSMGYMERLLFLDLSSNNFSRDLPK 436
           N+   +L       L  L  LD+S +  E S      +  +  L  L+LS N     L  
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKT 393

Query: 437 HFLTSCVSLEFMNLSHNYFDGQIFPK-YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYV 495
                C  LE ++L+      +     + NL  L  L L+ +      E       +L  
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 496 LDVSNNMLSGQLPRWIGKFSNLD---VLLMSRNSFEGDVSVQLSNLEVARILDISENKLY 552
           L++  N       +       L    +L++S            ++L++   +D+S N+L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNL 612
                + +H    YL   +N +S  +P+ L   SQ  T++LR N      +++       
Sbjct: 514 SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI-----YF 568

Query: 613 RALLLRGNNLQGNIPEPLC-HLRKLAIVDISYNTLN 647
                       +  + LC +   L  V +S  TL+
Sbjct: 569 LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  203 bits (519), Expect = 2e-56
 Identities = 108/626 (17%), Positives = 193/626 (30%), Gaps = 88/626 (14%)

Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           +  +     +    I   +    +   L  + N    +     S L  L  LDL+  ++ 
Sbjct: 15  KTYNCENLGLNE--IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF 297
             +      +   L+ L L  N                          +           
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLIF----------------------MAETALSGPKA- 106

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
            LK L      IS      L  Q     + L  N++  +          KL+++   NN 
Sbjct: 107 -LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNA 164

Query: 358 LTG-NLQLPNSKRNLPHLVIS-NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415
           +   + +  +S +   +L ++ N + I  +             L+         I   + 
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLK 223

Query: 416 Y--MERLLFLDLSSNNFSRDLPKHFLTSC-VSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
              ++ L        +     P  F   C +S+E +NL  +YF       +   + L  L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS 532
            L     +  L  GL+  S+L  L +S N            F +L  L +  N+   ++ 
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 533 VQ-LSNLEVARILDISENKLYG---PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQL 588
              L NLE  R LD+S + +           N S L+ L    N        A  +  QL
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 589 TTLDLRDNEFSGNIAHLINED-SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
             LDL         A    ++   L+ L L  + L  +  +    L  L  +++  N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 648 GPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707
                   ++                                               L  
Sbjct: 463 KGNIQKTNSLQT---------------------------------------------LGR 477

Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
           +  L LS  +L+         L  ++ ++LS+N L+ S   + S+LK    ++L+ N ++
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHIS 536

Query: 768 GQIPPELGELSFLAIFNVSYNNLSGT 793
             +P  L  LS     N+  N L  T
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (359), Expect = 2e-35
 Identities = 77/510 (15%), Positives = 153/510 (30%), Gaps = 94/510 (18%)

Query: 300 KVLNLRHCNIS---GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
           K  N  +  ++   GT+P   +       ++ S N L  T           L  + L   
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTEC------LEFSFNVLP-TIQNTTFSRLINLTFLDLTRC 67

Query: 357 FLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY 416
            +                 I  ++F              L  L ++ N        ++  
Sbjct: 68  QIYW---------------IHEDTFQS---------QHRLDTLVLTANPLIFMAETALSG 103

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
            + L  L       S  +    L +  +LE + L  N+      PK     KL  L   +
Sbjct: 104 PKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 477 NQFTG--RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN-----SFEG 529
           N      + ++  L  ++   L+++ N ++G +       +    L           F+G
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLT 589
             +  + +L +    D+ +  +   +       S+  +    +       N     S L 
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 590 TLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGP 649
            LDL     S  +   +   S L+ L+L  N  +        +   L  + I  NT    
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT 709
           + +                                                  + L+ + 
Sbjct: 341 LGTGCL-----------------------------------------------ENLENLR 353

Query: 710 GLDLSSNELT--GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
            LDLS +++        ++  L  + +LNLS N        +F      E +DL++ +L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 768 GQIPPE-LGELSFLAIFNVSYNNLSGTVPN 796
            +        L  L + N+S++ L  +   
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (329), Expect = 1e-31
 Identities = 68/389 (17%), Positives = 126/389 (32%), Gaps = 40/389 (10%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
            +  +   +  +P     S    E +  S N         +  L  L FL L   Q    
Sbjct: 17  YNCENLGLNE-IPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVAR 542
            E    +   L  L ++ N L       +     L  L   +        + L N +   
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 543 ILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLRDNEFS 599
            L +  N +    L        L+ L   NN++       +  LQ +   +L+L  N+ +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPL--CHLRKLAIVDISYNTLNGPIPSCFTNI 657
           G I     + +  ++L   G      I + L    ++ L +            P+ F   
Sbjct: 193 G-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF--- 248

Query: 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGL---DLS 714
                +G    S  S+ L                  K+ + +   +     +GL   DL+
Sbjct: 249 -----EGLCEMSVESINL-----------------QKHYFFNISSNTFHCFSGLQELDLT 286

Query: 715 SNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE- 773
           +  L+ ++PS +  L  +  L LS N        S SN      + +  N    ++    
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 774 LGELSFLAIFNVSYNNLSGTVPNKGQFAN 802
           L  L  L   ++S++++  +     Q  N
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 32/269 (11%), Positives = 76/269 (28%), Gaps = 52/269 (19%)

Query: 542 RILDISENKLYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG 600
             L+ S N L      + S   +L +L      +     +      +L TL L  N    
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 601 NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW 660
                ++    L+ L      +      PL + + L  + +  N ++             
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP---- 151

Query: 661 MEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG 720
                                                        + +  LD  +N +  
Sbjct: 152 --------------------------------------------TEKLKVLDFQNNAIHY 167

Query: 721 DIPSEIGYLGEIH--ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778
               ++  L +    +LNL+ N ++  I     +  + +S++    +    I   L   +
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 779 FLAIFNVSYNNLSGTVPNKGQFANFDESN 807
             +++  ++ ++     +   F    E +
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 4e-15
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 32/177 (18%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
               S F     L VL+LS +                   L I +            L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHS------------------LLDISSEQ----------LFD 446

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKG-LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
            L +L  L LQGN F +G       L  L  LE+L LS   ++ S+       LK +  +
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHV 505

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
           +++ N       + LS+L  +  L+L+SN +S  +  S++  L+    ++L  N   
Sbjct: 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-13
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 53/244 (21%)

Query: 570 HNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP 629
            N  L+  IP  L  S     L+   N          +   NL  L L    +     + 
Sbjct: 20  ENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEV 689
                +L  + ++ N L     +  +                                  
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSG--------------------------------- 103

Query: 690 KFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRS 749
                           K +  L      ++      +     + +L L +N +S      
Sbjct: 104 ---------------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 750 FSNLKMTESMDLSYNKLNGQIPPELGELSFLAI--FNVSYNNLSGTVPNKGQFANFDESN 807
               +  + +D   N ++     ++  L        N++ N+++G  P     A F   N
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 808 YRGN 811
           + G 
Sbjct: 209 FGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 14/155 (9%)

Query: 84  GFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP 143
              I   +       L +L LS       ++    +   SLK +  +++ +N    S + 
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 144 LLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLV 203
            L+ L  +  L L  N  S        L  L     ++L  N +  +      C     +
Sbjct: 519 ALSHLKGIY-LNLASNHISI--ILPSLLPILSQQRTINLRQNPLDCT------CSNIYFL 569

Query: 204 E-LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           E    N  + +        N   LR + LS   LS
Sbjct: 570 EWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (522), Expect = 8e-57
 Identities = 96/529 (18%), Positives = 163/529 (30%), Gaps = 34/529 (6%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
           +S  ++ L  N        +    N   L+ LDLS   I  ++  +    L +L  L + 
Sbjct: 32  SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILT 88

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
            N      P   S LT L  L     KL+  L    I  L +L+ L++  N        +
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 269 VLANHSRLEVFQLSR---LQVETENFPWLP--KFQLKVLNLRHCNISGTIPRFLQYQYDF 323
             +N + L    LS      +   +  +L         L++    I     +  Q     
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLP---------HL 374
             + L  N          LQN   L +  L          L   + ++            
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDL 434
            ++  +        F   L  +  + ++  S        +    +   L +         
Sbjct: 267 RLTYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QF 322

Query: 435 PKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFT--GRLEVGLLNASS 492
           P   L     L+ + L+ N     I  K + L  L +L L+ N  +  G      L  +S
Sbjct: 323 PTLDLP---FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 493 LYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ-LSNLEVARILDISENKL 551
           L  LD+S N     +         L  L    ++ +         +LE    LDIS    
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 552 YG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFSGNIAHLINED 609
                      +SL  L    NS      + +  + + LT LDL   +       + +  
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658
             L+ L +  NNL          L  L+ +D S+N +            
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  199 bits (508), Expect = 7e-55
 Identities = 112/556 (20%), Positives = 183/556 (32%), Gaps = 66/556 (11%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +    F  F EL  LDLS    E  E+         L  L  L +  N          + 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           LTSL +L       +     +  +  L  L+ L+++ N I    +     +L NLV +++
Sbjct: 103 LTSLENLVAVETKLAS--LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 208 NENEFDGLLPQCLSNLTYLR----VLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           + N    +    L  L         LD+S N +   +       +  L  L+L  N    
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSS 218

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETEN---------FPWLPKFQLKVLNLRHCNISGTIP 314
           +   + L N + L V +L   + + E             L    +    L + N      
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 315 RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHL 374
                  +   + L+  +                 I +L +       Q          L
Sbjct: 279 VKFHCLANVSAMSLAGVS-----------------IKYLEDVPKHFKWQ---------SL 312

Query: 375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDL 434
            I     + + P      LP L  L ++ N   GSI      +  L +LDLS N  S   
Sbjct: 313 SIIRCQ-LKQFPTLD---LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSG 366

Query: 435 PKHF-LTSCVSLEFMNLSHNYFDGQIFPKY-MNLAKLVFLFLNDNQFTGRLEVGLL-NAS 491
              +      SL  ++LS N     I     M L +L  L    +      E     +  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG----DVSVQLSNLEVARILDIS 547
            L  LD+S               ++L+ L M+ NSF+     +V    +NL     LD+S
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF---LDLS 481

Query: 548 ENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLI 606
           + +L             L+ L   +N+L     +   Q   L+TLD   N    +   L 
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 607 NEDSNLRALLLRGNNL 622
           +   +L    L  N++
Sbjct: 542 HFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (502), Expect = 4e-54
 Identities = 108/626 (17%), Positives = 193/626 (30%), Gaps = 95/626 (15%)

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
                  +++   +   I    +   ++++ N    L     SN + L+ LDLS  ++  
Sbjct: 15  TYQCMDQKLSK--VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQ 298
            +       L  L  L L  N  Q                           +F  L    
Sbjct: 71  -IEDKAWHGLHHLSNLILTGNPIQS----------------------FSPGSFSGLTS-- 105

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L+ L      ++      +      + ++++ N +          N T L  + L  N++
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
                            I+ N       +         + LDMS N  +  I        
Sbjct: 166 QT---------------ITVNDL-----QFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG---------QIFPKYMNLAKL 469
           +L  L L  N  S ++ K  L +   L    L    F            I     ++   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG 529
               L          V     +++  + ++   +   L     K      L + R   + 
Sbjct: 265 E-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVP-KHFKWQSLSIIRCQLKQ 321

Query: 530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQ 587
             ++ L  L+    L ++ NK     +      SL YL    N+LS +   +   L ++ 
Sbjct: 322 FPTLDLPFLKS---LTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLAIVDISYNTL 646
           L  LDL  N     ++        L+ L  + + L+          L KL  +DISY   
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 647 NGPIPSCFTN-ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVL 705
                  F    SL         +TL +A     N      +   F              
Sbjct: 437 KIDFDGIFLGLTSL---------NTLKMA----GNSFKDNTLSNVF-----------ANT 472

Query: 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK 765
             +T LDLS  +L          L  +  LN+S+N L       ++ L    ++D S+N+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 766 LNGQIPPELGELSFLAIFNVSYNNLS 791
           +             LA FN++ N+++
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (376), Expect = 1e-37
 Identities = 80/442 (18%), Positives = 142/442 (32%), Gaps = 28/442 (6%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
               + F     L  +DLS N  +    N       + +    L++  N   + +     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAF 201

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
               L  L L+GN  S        L NL  L V  L                        
Sbjct: 202 QGIKLHELTLRGNFNS-SNIMKTCLQNLAGLHVHRLILGEFKD----------------E 244

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
            N   F+  + + L ++T      L+      +        L ++  +SL     +    
Sbjct: 245 RNLEIFEPSIMEGLCDVTID-EFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKY--- 299

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYI 326
           L  +  H + +   + R Q++      LP   LK L L     S +            Y+
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLP--FLKSLTLTMNKGSISFK--KVALPSLSYL 355

Query: 327 DLSDNNLVDTFP-TWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           DLS N L  +   ++       L  + L  N              L HL   +++     
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL 445
             +  L L +L+YLD+S  + +         +  L  L ++ N+F  +   +   +  +L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG 505
            F++LS    +   +  +  L +L  L ++ N              SL  LD S N +  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 506 QLPRWIGKFSNLDVLLMSRNSF 527
                     +L    ++ NS 
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 2e-30
 Identities = 48/270 (17%), Positives = 88/270 (32%), Gaps = 20/270 (7%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNE--SLVPLL 145
           +     +    L  L L+ N+              +L  L  L++  N+ +         
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSI------SFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
               SL  L L  N        +   + L  L+ LD   + +           L+ L+ L
Sbjct: 373 LGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           +I+              LT L  L ++ N    N   +V AN T+L +L L      E  
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQI 488

Query: 266 PLSVLANHSRLEVFQLS--RLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF 323
              V     RL++  +S   L     +  +   + L  L+     I  +      +    
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

Query: 324 RYIDLSDNNLV-----DTFPTWLLQNNTKL 348
            + +L++N++        F  W+ +    L
Sbjct: 548 AFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 4e-17
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 8/152 (5%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LL 145
           +   S F+  ++L  LD+S    +   +         L  L  L +  NSF ++ +  + 
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
            + T+LT L L      +          L  L++L++S N +   L       L +L  L
Sbjct: 470 ANTTNLTFLDLSKCQLEQ--ISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTL 526

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
           + + N  +            L   +L++N ++
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
              +  LDLS  E+          L  +  L L+ N +    P SFS L   E++     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN 802
           KL       +G+L  L   NV++N +         F+N
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 29/82 (35%)

Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI 770
           +DLS N L            E+  L+LS   +     +++  L    ++ L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 771 PPELGELSFLAIFNVSYNNLSG 792
           P     L+ L         L+ 
Sbjct: 97  PGSFSGLTSLENLVAVETKLAS 118

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (492), Expect = 2e-51
 Identities = 90/555 (16%), Positives = 175/555 (31%), Gaps = 54/555 (9%)

Query: 145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
           L +   +T L L G       +    +  L  L+VL    +  T S  + G  +L   + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKG--RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLT--SLEYLSLFDNHFQ 262
                          L     L + DL  + ++ N  +  I   +  SL+   + +   +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 263 ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYD 322
            +F    +   ++L++   +      +N         +  N  +               D
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDN----IAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 323 FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLP---------- 372
              ++L +   +   P + L +  +L+ + +  N      QL      L           
Sbjct: 493 LTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 373 HLVISNNSFIGKLPENFGLI-LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFS 431
              +  N+     P +  L  + +L  LD   N        + G   +L  L L  N   
Sbjct: 552 IFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 432 RDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM---NLAKLVFLFLNDNQFTGRLE---- 484
            ++P+ F      +E +  SHN       P      ++  +  +  + N+          
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 485 -VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE-------GDVSVQLS 536
            +      +   + +S N +           S +  +++S N                  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 537 NLEVARILDISENKLYG-PLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR 594
           N  +   +D+  NKL     +F  +    L  +    N  S + P   L SSQL    +R
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784

Query: 595 ------DNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL-N 647
                  N         I    +L  L +  N+++  + E L    +L I+DI+ N   +
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNIS 841

Query: 648 GPIPSCFTNISLWME 662
             + S    I   M 
Sbjct: 842 IDVTSVCPYIEAGMY 856

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (472), Expect = 5e-49
 Identities = 81/620 (13%), Positives = 173/620 (27%), Gaps = 122/620 (19%)

Query: 196 ICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255
           + +   +  L++      G +P  +  LT L+VL   ++  + +  L     LT      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISG---- 311
                      +  L    RL +  L +  +   N    P  +   ++L+   I      
Sbjct: 379 RKHRIRMHYKKMF-LDYDQRLNLSDLLQDAI-NRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 312 --TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKR 369
              I + +Q     + I  +++       T+        +    +           ++ +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG---------SIPPSMGYMERL 420
           +L  + + N   + +LP+     LPEL  L+++ N              +        ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 421 LFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFT 480
               +  NN         L   V L  ++  HN    +    +    KL  L L+ NQ  
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 481 GRLEVGLL-NASSLYVLDVSNNMLSGQLPRW--IGKFSNLDVLLMSRNSFEGDVSVQLSN 537
             +          +  L  S+N L   +P          +  +  S N    +      +
Sbjct: 609 E-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
           ++                       +   +    N +           S ++T+ L +N 
Sbjct: 667 MD------------------DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657
            +      I E            N          +   L  +D+ +N L   +   F   
Sbjct: 709 MTS-----IPE------------NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750

Query: 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE 717
           +L                                               Y++ +D+S N 
Sbjct: 751 TL----------------------------------------------PYLSNMDVSYNC 764

Query: 718 LTGDIPSEIG------YLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
            +   P++          G  H  +   N +    P   +       + +  N +   + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

Query: 772 PELGELSFLAIFNVSYNNLS 791
            +L     L I +++ N   
Sbjct: 823 EKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (468), Expect = 2e-48
 Identities = 77/565 (13%), Positives = 167/565 (29%), Gaps = 61/565 (10%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +  ++  L++        +   +  LT L  L    +S +               ++ + 
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS--GRLFGDEELTPDMSEE 378

Query: 183 SGNRITGSLIMQGICDLKNLVELNINEN------EFDGLLPQCLSNLTYLRVLDLSSNKL 236
             +RI        +   + L   ++ ++      E   +      +L   + +   +N++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRI 437

Query: 237 SGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK 296
           +  +  + I  LT L+ +   ++ F          + +     Q    ++   N      
Sbjct: 438 TF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK---- 491

Query: 297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWL--------LQNNTKL 348
             L  + L +C     +P FL    + + ++++ N  +                    K+
Sbjct: 492 -DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 349 EIMFLFNNFLTGNLQLPNSK-----RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403
           +I ++  N L      P S        L  L   +N  +  L   FG    +L  L +  
Sbjct: 551 QIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNK-VRHLEA-FGT-NVKLTDLKLDY 604

Query: 404 NSFEGSIPPSMGY-MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ---- 458
           N  E  IP       +++  L  S N            S   +  ++ S+N    +    
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 459 -IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS-------GQLPRW 510
                         + L+ N+            S +  + +SNN+++             
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 511 IGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYL- 567
                 L  + +  N         + + L     +D+S N     P +   N S L+   
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFG 782

Query: 568 -----FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNL 622
                    N +    P  +     L  L +  N+       L      L  L +  N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPN 839

Query: 623 QGNIPEPLCHLRKLAIVDISYNTLN 647
                  +C   +  +  + Y+   
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (398), Expect = 1e-39
 Identities = 74/519 (14%), Positives = 145/519 (27%), Gaps = 83/519 (15%)

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
            N             L        + L+        P   +   T+L+++    +  T +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVS 362

Query: 362 LQLPNSKRNLPHLV-ISNNSFIGKLPENFGLILPELVYLDMSQNSFE-----GSIPPSMG 415
            +L   +   P +     +       + F      L   D+ Q++         I     
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLN 475
              +   +   +N  +  + K        L+ +  +++ F                   +
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDN-----IAVDWEDANSD 475

Query: 476 DNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV-- 533
             +     E+   N   L  +++ N     QLP ++     L  L ++ N       +  
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 534 -------QLSNLEVARILDISENKLYG-PLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQ 584
                          +I  +  N L   P   S      L  L   +N +      A   
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGT 593

Query: 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP--LCHLRKLAIVDIS 642
           + +LT L L  N+              +  L    N L+  IP       +  +  VD S
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFS 652

Query: 643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG 702
           YN +     +   ++  +                                          
Sbjct: 653 YNKIGSEGRNISCSMDDYK----------------------------------------- 671

Query: 703 DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS-------GSIPRSFSNLKM 755
                 + + LS NE+             I  + LSNN ++            ++ N  +
Sbjct: 672 --GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 756 TESMDLSYNKLNGQIPPEL--GELSFLAIFNVSYNNLSG 792
             ++DL +NKL   +  +     L +L+  +VSYN  S 
Sbjct: 730 LTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  147 bits (372), Expect = 2e-36
 Identities = 60/415 (14%), Positives = 127/415 (30%), Gaps = 66/415 (15%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFN---------ESLVP 143
           +   ++L  ++L +        +  Y+    L +L+ LNI  N              L  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYD----LPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 144 LLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLV 203
              +   +   ++  N+  E F  +  L  +  L +LD   N++     ++       L 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLT 598

Query: 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           +L ++ N+ + +     +    +  L  S NKL     +    ++  +  +    N    
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG- 657

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF 323
           S   ++  +   ++ ++                     + L +  I              
Sbjct: 658 SEGRNISCS---MDDYKGINAS---------------TVTLSYNEIQKFPTELFATGSPI 699

Query: 324 RYIDLSDNNL------VDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKR-----NLP 372
             I LS+N +               +N   L  + L  N LT    L +  R      L 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLS 756

Query: 373 HLVISNNSFIGKLPENFGLILPELVYLDMSQ------NSFEGSIPPSMGYMERLLFLDLS 426
           ++ +S N F    P        +L    +        N      P  +     L+ L + 
Sbjct: 757 NMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 427 SNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQ 478
           SN+    + +        L  ++++ N     D      Y+    +  L  +  Q
Sbjct: 815 SNDIR-KVDEKLTP---QLYILDIADNPNISIDVTSVCPYIEA-GMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.3 bits (224), Expect = 1e-18
 Identities = 38/275 (13%), Positives = 84/275 (30%), Gaps = 12/275 (4%)

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
             +   LD    + Y     ++ HS         +         L  + ++T L L    
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657
             G +   I + + L+ L    ++   +            + +   + +       F + 
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394

Query: 658 SLWMEK----GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV--LKYMTGL 711
              +       +  N    +    +D+R S +  ++  +  NR       +  L  +  +
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITFISKAIQRLTKLQII 453

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
             +++  T D  +           N        +   S+SNLK    ++L       Q+P
Sbjct: 454 YFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 772 PELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES 806
             L +L  L   N++ N        K  +    + 
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (447), Expect = 7e-46
 Identities = 105/607 (17%), Positives = 204/607 (33%), Gaps = 60/607 (9%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +  S F   ++L +L+L         + +A+   R+L  L+IL++G +            
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDKEAF---RNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           L  L  L L     S+    +    NL+ L  LDLS N+I    +      L +L  ++ 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 208 NENEFDGLLPQCLSNLT--YLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           + N+   +    L  L    L    L++N L   + +     +     + L       + 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 266 ----------------PLSVLANHSRLEVFQLSRLQVET---ENFPWLPKFQLKVLNLRH 306
                               L     +         ++      F  L +  ++ L+L H
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

Query: 307 CNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN 366
             +     R  +   D + ++L+ N + +            L+++ L  N L    +L +
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLG---ELYS 331

Query: 367 SK----RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLF 422
           S       + ++ +  N  I  + +     L +L  LD+  N+       ++ ++  +  
Sbjct: 332 SNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG-QIFPKYMNLAKLVFLFLNDNQFTG 481
           + LS N        +      +   ++LS N  +   I    + +  L  L LN N+F+ 
Sbjct: 386 IFLSGNKLVTLPKINL-----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 482 RLEVGLLNA-SSLYVLDVSNNMLSGQLPRWI-----GKFSNLDVLLMSRN---SFEGDVS 532
                  +   SL  L +  NML       +        S+L VL ++ N   S    V 
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 533 VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLD 592
             L+ L   R L ++ N+L   L  +   ++L  L    N L    P+       L+ LD
Sbjct: 501 SHLTAL---RGLSLNSNRLTV-LSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLD 553

Query: 593 LRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS 652
           +  N+F          +      +                   +++  +S    +     
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

Query: 653 CFTNISL 659
                SL
Sbjct: 614 KSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (441), Expect = 5e-45
 Identities = 100/539 (18%), Positives = 173/539 (32%), Gaps = 55/539 (10%)

Query: 122 RSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLD 181
           + L   + L + +N            L  L  L L            +   NL NL +LD
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILD 79

Query: 182 LSGNRITGSLIMQGICDLKNLVELNINENEF--DGLLPQCLSNLTYLRVLDLSSNKLSGN 239
           L  ++I   L       L +L EL +         L      NL  L  LDLS N++   
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 240 LPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQL 299
                   L SL+ +    N                          V       L    L
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFL----------------------VCEHELEPLQGKTL 176

Query: 300 KVLNLRHCNISGTIPR-FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
              +L   ++   +   + +    FR + L   +        +  N   ++I   F+N +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAI 228

Query: 359 TG-NLQLPNSKRNLPHLVISNNSFIGKLPENF-GLILPELVYLDMSQNSFEGSIPPSMGY 416
           +           ++       ++        F GL    + +LD+S              
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
           ++ L  L+L+ N  +  +         +L+ +NLS+N         +  L K+ ++ L  
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS 536
           N      +        L  LD+ +N L+      I    ++  + +S N       + L+
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 537 NLEVARILDISENKLYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDL 593
               A ++ +SEN+L     L F      L+ L  + N  S    +        L  L L
Sbjct: 403 ----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 594 RDNEFSGNIAHLINED-----SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
            +N         +  D     S+L+ L L  N L    P    HL  L  + ++ N L 
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (425), Expect = 4e-43
 Identities = 105/575 (18%), Positives = 208/575 (36%), Gaps = 50/575 (8%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLT 149
            +         L LS N           ++   L+QL++L +G      ++      +L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 150 SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGIC-DLKNLVELNIN 208
           +L  L L  +       H      L +L  L L    ++ +++  G   +LK L  L+++
Sbjct: 74  NLRILDLGSSKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 209 ENEFDGL-LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLT--SLEYLSLFDNHFQESF 265
           +N+   L L      L  L+ +D SSN++   +    +  L   +L + SL  N      
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 266 PLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
            +      +      L  L V + N      + + +       IS +    L   +    
Sbjct: 191 SVDWGKCMNPFRNMVLEILDV-SGN-----GWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 326 IDLSDNNLVDTFPTWLL-QNNTKLEIMFLFNNFLT--GNLQLPNSKRNLPHLVISNNSFI 382
                +N+ D           + +  + L + F+    +      K +L  L ++ N  I
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNK-I 302

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
            K+ +     L  L  L++S N        +   + ++ ++DL  N+ +  +        
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFL 361

Query: 443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNM 502
             L+ ++L  N            +  +  +FL+ N+    L    L   +  ++ +S N 
Sbjct: 362 EKLQTLDLRDNA-----LTTIHFIPSIPDIFLSGNKLV-TLPKINL---TANLIHLSENR 412

Query: 503 LSG-QLPRWIGKFSNLDVLLMSRNSFEGDVSVQL-SNLEVARILDISENKLYG------P 554
           L    +  ++ +  +L +L++++N F      Q  S       L + EN L         
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED--SNL 612
            +     S L+ L+ ++N L+   P      + L  L L  N     +  L + D  +NL
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN----RLTVLSHNDLPANL 528

Query: 613 RALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
             L +  N L    P        L+++DI++N   
Sbjct: 529 EILDISRNQLLAPNP---DVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (404), Expect = 2e-40
 Identities = 115/698 (16%), Positives = 214/698 (30%), Gaps = 156/698 (22%)

Query: 131 NIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGS 190
            I +  F  +L  +   L +   L L  N              L  L++L+L       +
Sbjct: 7   RIAFYRFC-NLTQVPQVLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLT 63

Query: 191 LIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS-GNLPLSVIANLT 249
           +  +   +L NL  L++  ++   L P     L +L  L L    LS   L      NL 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLNLRH 306
           +L  L L  N  +  +        + L+    S  Q   V       L    L   +L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 307 CNISGTIPR-FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG-NLQL 364
            ++   +   + +    FR + L   ++          N   ++I   F+N ++      
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDV--------SGNGWTVDITGNFSNAISKSQAFS 235

Query: 365 PNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLD 424
                ++       ++                   D  QN+F G    S      +  LD
Sbjct: 236 LILAHHIMGAGFGFHNI-----------------KDPDQNTFAGLARSS------VRHLD 272

Query: 425 LSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLE 484
           LS       L      +   L+ +NL++N  +                 + D  F G   
Sbjct: 273 LSHGFVF-SLNSRVFETLKDLKVLNLAYNKINK----------------IADEAFYG--- 312

Query: 485 VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARIL 544
                  +L VL++S N+L                  +  ++F G     L  +     +
Sbjct: 313 -----LDNLQVLNLSYNLLG----------------ELYSSNFYG-----LPKVAY---I 343

Query: 545 DISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603
           D+ +N +     +       L+ L   +N+L+      +     +  + L  N     + 
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN----KLV 394

Query: 604 HLINEDSNLRALLLRGNNLQG-NIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662
            L   +     + L  N L+  +I   L  +  L I+ ++ N  +        +      
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------ 448

Query: 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722
                                                        +  L L  N L    
Sbjct: 449 -----------------------------------------ENPSLEQLFLGENMLQLAW 467

Query: 723 PSEI-----GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL 777
            +E+       L  +  L L++N+L+   P  FS+L     + L+ N+L   +       
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-P 525

Query: 778 SFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
           + L I ++S N L    PN   F +    +   N ++C
Sbjct: 526 ANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 49/302 (16%)

Query: 85  FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPL 144
             II    F   ++L  LDL DN            T   +  +  + +  N        L
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL---------TTIHFIPSIPDIFLSGNKLVT----L 396

Query: 145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
                +   + L  N   E       L+ + +L++L L+ NR +     Q   +  +L +
Sbjct: 397 PKINLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 205 LNINENEFDGLLPQCL-----SNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           L + EN         L       L++L+VL L+ N L+ +LP  V ++LT+L  LSL  N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSN 514

Query: 260 HFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQY 319
                    + AN                          L++L++    +    P     
Sbjct: 515 RLTVLSHNDLPAN--------------------------LEILDISRNQLLAPNPDVFVS 548

Query: 320 QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
                 +D++ N  +         N      + +           P+S   +    +S  
Sbjct: 549 ---LSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

Query: 380 SF 381
             
Sbjct: 606 GC 607

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  167 bits (425), Expect = 4e-44
 Identities = 107/540 (19%), Positives = 173/540 (32%), Gaps = 57/540 (10%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
            K L++ +N           S   L  L L           +    +L +L  L L+GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNP 87

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA 246
           I  SL +     L +L +L   E     L    + +L  L+ L+++ N +         +
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ----LSRLQVETENFPWLPKFQLKVL 302
           NLT+LE+L L  N  Q S   + L    ++ +      LS   +         + +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 303 NLRHCNISGTIPR-------FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL-- 353
            LR+   S  + +        L+          ++ NL   F    L+    L I     
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRL 264

Query: 354 --FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP 411
              + +L   + L N   N+    + + +       ++      L  ++     F     
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 412 PSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY--MNLAKL 469
            S      L  L  +SN       +  L    SLEF++LS N    +            L
Sbjct: 325 KS------LKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG 529
            +L L+ N     +    L    L  LD  ++ L                        E 
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK--------------------QMSEF 414

Query: 530 DVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQ 587
            V + L NL     LDIS            +  SSL  L    NS        +      
Sbjct: 415 SVFLSLRNL---IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
           LT LDL   +         N  S+L+ L +  N L+         L  L  + +  N  +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  167 bits (424), Expect = 6e-44
 Identities = 109/530 (20%), Positives = 193/530 (36%), Gaps = 47/530 (8%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +    F  F EL VLDLS    +  E+       +SL  L  L +  N      +   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           L+SL  L     + +     N  + +L+ L+ L+++ N I    + +   +L NL  L++
Sbjct: 99  LSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 208 NENEFDGLLPQCLSNLTYLRV----LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           + N+   +    L  L  + +    LDLS N ++  +       +  L  L+L +N    
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETEN-FPWLPKFQLKVLNLRHCNISGTIPRFLQYQYD 322
           +   + +   + LEV +L   +   E       K  L+ L                    
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC----------------NLT 258

Query: 323 FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFI 382
                L+  +        L    T +    L +  +        +     HL + N  F 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFG 317

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR-DLPKHFLTS 441
              P    L L  L  L  + N   G+    +  +  L FLDLS N  S           
Sbjct: 318 Q-FPT---LKLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSN 500
             SL++++LS N     +   ++ L +L  L    +      E  +  +  +L  LD+S+
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 501 NMLSGQLPRWIGKFSNLDVLLMSRN----SFEGDVSVQLSNLEVARILDISENKLYG-PL 555
                         S+L+VL M+ N    +F  D+  +L NL     LD+S+ +L     
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT---FLDLSQCQLEQLSP 487

Query: 556 EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHL 605
              ++ SSL+ L   +N L         + + L  + L  N +  +   +
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (379), Expect = 3e-38
 Identities = 104/516 (20%), Positives = 175/516 (33%), Gaps = 59/516 (11%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
            S  +L L  N        +    +   L+VLDLS   I  ++       L +L  L + 
Sbjct: 28  FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
            N    L     S L+ L+ L      L+ +L    I +L +L+ L++  N  Q SF L 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNIS----GTIPRFLQYQYDFR 324
                               E F  L    L+ L+L    I       +    Q      
Sbjct: 143 --------------------EYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGK 384
            +DLS N + +       +   +L  + L NNF + N+ +    + L  L +        
Sbjct: 181 SLDLSLNPM-NFIQPGAFKE-IRLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHR------ 231

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVS 444
           L          L   D  +++ EG    +      +    L+  ++  D          +
Sbjct: 232 LVLGEFRNEGNLEKFD--KSALEGLCNLT------IEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           +   +L       +    +        L L + +F    +   L   SL  L  ++N   
Sbjct: 284 VSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGG 338

Query: 505 GQLPRWIGKFSNLDVLLMSRN--SFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS 562
                      +L+ L +SRN  SF+G  S         + LD+S N +           
Sbjct: 339 NAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 563 SLRYLFPHNNSLSGTIP-NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
            L +L   +++L      +  L    L  LD+           + N  S+L  L + GN+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 622 LQGNI-PEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656
            Q N  P+    LR L  +D+S   L    P+ F +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (371), Expect = 4e-37
 Identities = 97/617 (15%), Positives = 181/617 (29%), Gaps = 116/617 (18%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +   L+++ N    L      +   L+VLDLS  ++   +      +L+ L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 261 FQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ 320
            Q                       +    F  L    L+ L     N++      + + 
Sbjct: 88  IQ----------------------SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHL 123

Query: 321 YDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNS 380
              + ++++ N +          N T LE + L +N +                 I    
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---------------IYCTD 168

Query: 381 FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440
                      +    + LD+S N     I P      RL  L L +N  S ++ K  + 
Sbjct: 169 L-----RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 441 SCVSLEFMNLSHNYFDGQ---------IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNAS 491
               LE   L    F  +               NL    F     + +   +       +
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKL 551
           ++    + +  +                L +    F    +++L +L+    L  + NK 
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKG 337

Query: 552 YGPLEFSSNHSSLRYLFPHNNSLS--GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED 609
                   +  SL +L    N LS  G    +   ++ L  LDL  N     ++      
Sbjct: 338 GNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 610 SNLRALLLRGNNLQGNIPE-PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYN 668
             L  L  + +NL+          LR L  +DIS+          F              
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------ 443

Query: 669 STLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-G 727
                                               L  +  L ++ N    +   +I  
Sbjct: 444 ------------------------------------LSSLEVLKMAGNSFQENFLPDIFT 467

Query: 728 YLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVS 786
            L  +  L+LS   L    P +F++L   + ++++ N+L   +P      L+ L    + 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526

Query: 787 YNNLSGTVPNKGQFANF 803
            N    + P     + +
Sbjct: 527 TNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 9e-25
 Identities = 75/421 (17%), Positives = 139/421 (33%), Gaps = 33/421 (7%)

Query: 392 ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLS 451
           +      LD+S N        S      L  LDLS       +      S   L  + L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84

Query: 452 HNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML-SGQLPRW 510
            N         +  L+ L  L   +          + +  +L  L+V++N++ S +LP +
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 511 IGKFSNLDVLLMSRNSFEG---DVSVQLSNLEVARI-LDISENKLYGPLEFSSNHSSLRY 566
               +NL+ L +S N  +         L  + +  + LD+S N +      +     L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 567 LFPHNNSLSGTIPNAL---LQSSQLTTLDLRDNEFSGNIAHL-INEDSNLRALLLRGNNL 622
           L   NN  S  +       L   ++  L L +    GN+     +    L  L +    L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 623 QGN------IPEPLCHLRKLAIVDISYNTLNG-PIPSCFTNISLWMEKGNYYNSTLSLAL 675
                    I +    L  ++   +   T+      S              +    +L L
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 676 PAEDNRESSQRVEVKFMAKNR-YESYKGDVLKYMTGLDLSSNELT--GDIPSEIGYLGEI 732
            +      +          N+   ++    L  +  LDLS N L+  G           +
Sbjct: 325 KSLKRLTFTS---------NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 733 HALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE--LGELSFLAIFNVSYNNL 790
             L+LS N +  ++  +F  L+  E +D  ++ L  Q+        L  L   ++S+ + 
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 791 S 791
            
Sbjct: 434 R 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 4e-22
 Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
             N    V    L  LDLS N            +      LK L++ +N    ++     
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-ITMSSNFL 393

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L  L  L  Q ++  +        ++LRNL  LD+S               L +L  L 
Sbjct: 394 GLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 451

Query: 207 INENEF-DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           +  N F +  LP   + L  L  LDLS  +L   L  +   +L+SL+ L++  N  + S 
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLK-SV 509

Query: 266 PLSVLANHSRLEVFQLS 282
           P  +    + L+   L 
Sbjct: 510 PDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 20/200 (10%)

Query: 610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN----ISLWMEKGN 665
            + + L L  N L+           +L ++D+S   +       + +     +L +    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL---- 83

Query: 666 YYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGL---DLSSNELT-GD 721
             N   SLAL A         ++     +    S +   + ++  L   +++ N +    
Sbjct: 84  TGNPIQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLK----MTESMDLSYNKLNGQIPPELGEL 777
           +P     L  +  L+LS+N +          L     +  S+DLS N +N  I P   + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 778 SFLAIFNVSYNNLSGTVPNK 797
             L    +  N  S  V   
Sbjct: 200 IRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
                     IP  +        L+LS N L      SF +    + +DLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 772 PELGELSFLAIFNVSYNNLS 791
                LS L+   ++ N + 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ 89

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 6e-44
 Identities = 93/502 (18%), Positives = 170/502 (33%), Gaps = 42/502 (8%)

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
             ++ SL L  N  +     +  L    NL+VL L  +RI  ++       L +L  L++
Sbjct: 25  TAAMKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           ++N    L       L+ L+ L+L  N        S+  NLT+L+ L + +         
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 268 SVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
              A  + L   ++  L     ++++   +    +  L L     +  +  F       R
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRD--IHHLTLHLSESAFLLEIFADILSSVR 199

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT--------GNLQLPNSKRNLPHLVI 376
           Y++L D NL   F    L  +     M       +          L+L      L  +  
Sbjct: 200 YLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 377 SNNSF----------IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLS 426
            + +              + E   +    +  L + Q      +      +E++  + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 427 SNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM---NLAKLVFLFLNDNQFT--G 481
           ++     +P  F     SLEF++LS N    +             L  L L+ N      
Sbjct: 319 NSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 482 RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVA 541
           +    LL   +L  LD+S N     +P        +  L +S        +     LEV 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV- 435

Query: 542 RILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGN 601
             LD+S N L     FS     L+ L+   N L      +L     L  + +  N+    
Sbjct: 436 --LDVSNNNLD---SFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSV 488

Query: 602 IAHLINEDSNLRALLLRGNNLQ 623
              + +  ++L+ + L  N   
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (417), Expect = 3e-43
 Identities = 102/520 (19%), Positives = 175/520 (33%), Gaps = 60/520 (11%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I          L VL L  +R    E +       SL  L+ L++  N  +         
Sbjct: 41  IGHGDLRACANLQVLILKSSRINTIEGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           L+SL  L L GN +           NL NL+ L +        +       L +L EL I
Sbjct: 97  LSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF-- 265
                     Q L ++  +  L L  ++ +  L       L+S+ YL L D +       
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 266 PLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
           PL V    S ++        +  E+F  L K    +L L                     
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD--------------- 259

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
            D + N L               +     ++ ++   ++      +  L I        L
Sbjct: 260 -DCTLNGL--------------GDFNPSESDVVSELGKVETV--TIRRLHIPQFYLFYDL 302

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH--FLTSCV 443
              + L L ++  + +  +           +++ L FLDLS N    +  K+     +  
Sbjct: 303 STVYSL-LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 444 SLEFMNLSHNYF-----DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498
           SL+ + LS N+       G+I    + L  L  L ++ N F   +         +  L++
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEIL---LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
           S+  +   +         L+VL +S N+ +   S+ L  L+    L IS NKL   L  +
Sbjct: 418 SSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQE---LYISRNKLKT-LPDA 469

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF 598
           S    L  +    N L         + + L  + L  N +
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 1e-35
 Identities = 105/601 (17%), Positives = 182/601 (30%), Gaps = 111/601 (18%)

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
           V D      T   I  G+     +  L+++ N+   +    L     L+VL L S++++ 
Sbjct: 9   VCDGRSRSFTS--IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQ 298
            +      +L SLE+L L DNH                         + +  F  L    
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSS----------------------LSSSWFGPLSS-- 99

Query: 299 LKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
           LK LNL         +        + + + + +               T L  + +    
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 358 LTG-NLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY 416
           L     Q   S R++ HL +  +     L E F  IL  + YL++   +        +  
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM-NLSHNYFDGQIFPKYMNLAKLVFLFLN 475
            E    +   +   S    + F      L ++  LS   FD        +         N
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD--------DCTLNGLGDFN 270

Query: 476 DNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVS 532
            ++     E+G +   ++  L +    L   L         +  + +  +         S
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 533 VQLSNLEVARILDISENKLY----GPLEFSSNHSSLRYLFPHNNSLS--GTIPNALLQSS 586
             L +LE    LD+SEN +               SL+ L    N L         LL   
Sbjct: 331 QHLKSLEF---LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 587 QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL 646
            LT+LD+  N F   +         +R L L    ++  +    C  + L ++D+S N L
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNL 443

Query: 647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706
                                  + SL LP                              
Sbjct: 444 ----------------------DSFSLFLPR----------------------------- 452

Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
            +  L +S N+L   +P        +  + +S N L       F  L   + + L  N  
Sbjct: 453 -LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 767 N 767
           +
Sbjct: 510 D 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 3e-23
 Identities = 72/476 (15%), Positives = 148/476 (31%), Gaps = 74/476 (15%)

Query: 327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK----RNLPHLVISNNSFI 382
           D    +   + P+ L      ++ + L  N +T    + +       NL  L++ ++  I
Sbjct: 11  DGRSRSF-TSIPSGLTAA---MKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSR-I 62

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTS 441
             +  +    L  L +LD+S N    S+  S  G +  L +L+L  N +          +
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 442 CVSLEFMNLSHNYFDGQIFPKY-MNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN 500
             +L+ + + +     +I       L  L  L +            L +   ++ L +  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 501 NMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSN 560
           +  +  L  +    S++  L +   +        L   EV+  +     +     + S N
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620
              L  L  +   LS  +       + L   +  +++    +  +  E   +R L +   
Sbjct: 242 E--LLKLLRYILELS-EVEFDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQF 296

Query: 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN 680
            L  ++      L K+  + +  + +     S   +                        
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH------------------------ 332

Query: 681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI---PSEIGYLGEIHALNL 737
                                   LK +  LDLS N +  +     +  G    +  L L
Sbjct: 333 ------------------------LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 738 SNNFLS--GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           S N L            LK   S+D+S N  +  +P        +   N+S   + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 1e-22
 Identities = 64/364 (17%), Positives = 125/364 (34%), Gaps = 50/364 (13%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESL 141
                 +          +  L+L D                           ++      
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLA--------------------RFQFSPLPVDE 220

Query: 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT-----GSLIMQGI 196
           V       +     L   SF+E  K  + ++ L  +E  D + N +       S ++  +
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 197 CDLK--NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
             ++   +  L+I +      L    S L  ++ + + ++K+   +P S   +L SLE+L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339

Query: 255 SLFDNHFQESF--PLSVLANHSRLEVFQLSR-----LQVETENFPWLPKFQLKVLNLRHC 307
            L +N   E +    +       L+   LS+     +Q   E    L    L  L++   
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK--NLTSLDISRN 397

Query: 308 NISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNS 367
                +P   Q+    R+++LS   +              LE++ + NN L         
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNLD---SFSLF 449

Query: 368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS-MGYMERLLFLDLS 426
              L  L IS N  +  LP+    + P L+ + +S+N  + S+P      +  L  + L 
Sbjct: 450 LPRLQELYISRNK-LKTLPD--ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH 505

Query: 427 SNNF 430
           +N +
Sbjct: 506 TNPW 509

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (368), Expect = 2e-37
 Identities = 100/517 (19%), Positives = 180/517 (34%), Gaps = 69/517 (13%)

Query: 86  PIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL 145
           PI  +       E     L                                         
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTD------------------------------TVSQ 42

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
           T L  +T+L         G K   G+  L NL  ++ S N++T    +  + +L  LV++
Sbjct: 43  TDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDI 95

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
            +N N+   + P  L+NLT L  L L +N+++    +  + NLT+L  L L  N   +  
Sbjct: 96  LMNNNQIADITP--LANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISD-- 148

Query: 266 PLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
            +S L+  + L+         + +    L    L+ L++    +S      L    +   
Sbjct: 149 -ISALSGLTSLQQLSFGNQVTDLKPLANLTT--LERLDISSNKVSD--ISVLAKLTNLES 203

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           +  ++N + D  P   L   T L+ + L  N L     L +   NL  L ++NN      
Sbjct: 204 LIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA 259

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL 445
           P +    L +L  L +  N      P  +  +  L  L+L+ N      P   +++  +L
Sbjct: 260 PLSG---LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNL 311

Query: 446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG 505
            ++ L  N           +L KL  LF  +N+ +    +  L   ++  L   +N +S 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLT--NINWLSAGHNQISD 367

Query: 506 QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLR 565
             P  +   + +  L ++  ++        +N+ +   +      L  P   S    S  
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG-GSYT 424

Query: 566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602
                 N  S          SQ  T+      FSG +
Sbjct: 425 EPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (367), Expect = 3e-37
 Identities = 101/506 (19%), Positives = 176/506 (34%), Gaps = 90/506 (17%)

Query: 145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVE 204
            T+L       L   + +          +L  +  L      I     + G+  L NL +
Sbjct: 20  DTALAEKMKTVLGKTNVT----DTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQ 72

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
           +N + N+   + P  L NLT L  + +++N+++    ++ +ANLT+L  L+LF+N   + 
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDI 127

Query: 265 FPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
            PL  L N                          L  L L    IS      L      +
Sbjct: 128 DPLKNLTN--------------------------LNRLELSSNTISDISA--LSGLTSLQ 159

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGK 384
            +    N + D  P   L N T LE + + +N ++                         
Sbjct: 160 QLSFG-NQVTDLKP---LANLTTLERLDISSNKVSD------------------------ 191

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVS 444
                   L  L  L  + N      P  +G +  L  L L+ N    D+    L S  +
Sbjct: 192 -ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG--TLASLTN 244

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           L  ++L++N            L KL  L L  NQ +      L   ++L  L+++ N L 
Sbjct: 245 LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLE 300

Query: 505 GQLPRWIGKFSNLDVLLMSRNSFEGDVSV-QLSNLEVARILDISENKLYGPLEFSSNHSS 563
              P  I    NL  L +  N+      V  L+ L+    L    NK+      ++  ++
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR---LFFYNNKVSDVSSLANL-TN 354

Query: 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ 623
           + +L   +N +S   P  L   +++T L L D  ++    +     S      ++     
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN--TVKNVTGA 410

Query: 624 GNIPEPLCHLRKLAIVDISYNTLNGP 649
              P  +         DI++N  +  
Sbjct: 411 LIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 2e-33
 Identities = 93/526 (17%), Positives = 180/526 (34%), Gaps = 116/526 (22%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
              ++   Q    ++ F        L       L    +T ++      DL  +  L  +
Sbjct: 2   PLGSATITQDTPINQIF----TDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQAD 54

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
                 +    +  L  L  ++ S+N+L+    ++ + NLT L  + + +N   +  PL+
Sbjct: 55  RLGIKSIDG--VEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLA 109

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
            L N                          L  L L +  I+   P  L+   +   ++L
Sbjct: 110 NLTN--------------------------LTGLTLFNNQITDIDP--LKNLTNLNRLEL 141

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
           S N + D      L   T L+ +   N                    +++   +  L   
Sbjct: 142 SSNTISDISA---LSGLTSLQQLSFGNQ-------------------VTDLKPLANLTT- 178

Query: 389 FGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM 448
                  L  LD+S N    S    +  +  L  L  ++N  S D+    L    +L+ +
Sbjct: 179 -------LERLDISSNKV--SDISVLAKLTNLESLIATNNQIS-DIT--PLGILTNLDEL 226

Query: 449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP 508
           +L+ N           +L  L  L L +NQ +      L   + L  L +  N +S    
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQIS---- 278

Query: 509 RWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLF 568
                 S L                 L+ L     L+++EN+L      S+   +L YL 
Sbjct: 279 ----NISPLA---------------GLTALTN---LELNENQLEDISPISNL-KNLTYLT 315

Query: 569 PHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLRGNNLQGNI 626
            + N++S   P  +   ++L  L   +N+ S   ++A+L    +N+  L    N +    
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANL----TNINWLSAGHNQISD-- 367

Query: 627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLS 672
             PL +L ++  + ++         +   N+S+     N   + ++
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (277), Expect = 1e-25
 Identities = 92/517 (17%), Positives = 170/517 (32%), Gaps = 86/517 (16%)

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
           +     L   N++ T+            +      +        ++    L  +   NN 
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQ 79

Query: 358 LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM 417
           LT    L N    L  ++++NN             L  L  L +  N      P  +  +
Sbjct: 80  LTDITPLKNLT-KLVDILMNNNQIAD--ITPLAN-LTNLTGLTLFNNQITDIDP--LKNL 133

Query: 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN 477
             L  L+LSSN  S D+    L+   SL+ ++  +   D +      NL  L  L ++ N
Sbjct: 134 TNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFGNQVTDLKPLA---NLTTLERLDISSN 187

Query: 478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSN 537
           + +      L   ++L  L  +NN +S   P  +G  +NLD L ++ N  +   +  L++
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LAS 241

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
           L     LD++ N++      S   + L  L    N +S   P  L   + LT L+L +N+
Sbjct: 242 LTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657
                   I+   NL  L L  NN+      P+  L KL  +    N ++          
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLAN--- 351

Query: 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE 717
                                                          L  +  L    N+
Sbjct: 352 -----------------------------------------------LTNINWLSAGHNQ 364

Query: 718 LTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPP-ELGE 776
           ++    + +  L  I  L L++   + +     +N+ +    +   N     I P  + +
Sbjct: 365 ISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIP---NTVKNVTGALIAPATISD 419

Query: 777 LSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPY 813
                  ++++N  S T      F+           +
Sbjct: 420 GGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (263), Expect = 6e-24
 Identities = 81/434 (18%), Positives = 152/434 (35%), Gaps = 47/434 (10%)

Query: 369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSN 428
                 V+   +    + +     L ++  L   +          + Y+  L  ++ S+N
Sbjct: 24  AEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 78

Query: 429 NFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL 488
             + D+    L +   L  + +++N           NL  L  L L +NQ T    +  L
Sbjct: 79  QLT-DIT--PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNL 133

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548
             ++L  L++S+N +S      +   ++L  L       +      L+ LE    LDIS 
Sbjct: 134 --TNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLER---LDISS 186

Query: 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLI 606
           NK+      +   ++L  L   NN +S   P  +L  + L  L L  N+      +A L 
Sbjct: 187 NKVSDISVLAKL-TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASL- 242

Query: 607 NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP-SCFTNI-SLWMEKG 664
              +NL  L L  N +      PL  L KL  + +  N ++   P +  T + +L +   
Sbjct: 243 ---TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN-E 296

Query: 665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG-DVLKYMTGLDLSSNELTGDIP 723
           N       +         + + +    +  N          L  +  L   +N+++    
Sbjct: 297 NQLEDISPI--------SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--V 346

Query: 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF 783
           S +  L  I+ L+  +N +S   P   +NL     + L+              +S     
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP--- 401

Query: 784 NVSYNNLSGTVPNK 797
           N   N     +   
Sbjct: 402 NTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (255), Expect = 7e-23
 Identities = 58/304 (19%), Positives = 109/304 (35%), Gaps = 29/304 (9%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + ++S+      L  L  ++N+               L  L  L++  N   +  +  L 
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLG------ILTNLDELSLNGNQLKD--IGTLA 240

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           SLT+LT L L  N  S        L  L  L  L L  N+I+    +  +  L  L  L 
Sbjct: 241 SLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISN---ISPLAGLTALTNLE 293

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +NEN+ + + P  +SNL  L  L L  N +S    +S +++LT L+ L  ++N   +   
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSD--- 345

Query: 267 LSVLANHSRLEVFQLSRLQVET-ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
           +S LAN + +        Q+        L +  +  L L     +     +     +   
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKA---NVSI 400

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
            +   N          + +        +  N  +   ++  +      +     +F G +
Sbjct: 401 PNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 386 PENF 389
            +  
Sbjct: 461 TQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 78/381 (20%), Positives = 137/381 (35%), Gaps = 63/381 (16%)

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
           +   +   L   N +  +     T    +  +         +       L  L  +  ++
Sbjct: 23  LAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 77

Query: 477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQL 535
           NQ T    +  L  + L  + ++NN ++   P  +   +NL  L +  N     D    L
Sbjct: 78  NQLTDITPLKNL--TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNL 133

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
           +NL     L++S N +      S   +SL+ L   N  ++   P A L  + L  LD+  
Sbjct: 134 TNLNR---LELSSNTISDISALSGL-TSLQQLSFGNQ-VTDLKPLANL--TTLERLDISS 186

Query: 596 NEFSG--NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP-S 652
           N+ S    +A L    +NL +L+   N +      PL  L  L  + ++ N L      +
Sbjct: 187 NKVSDISVLAKL----TNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLA 240

Query: 653 CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG-DVLKYMTGL 711
             TN++            L LA                    N+  +      L  +T L
Sbjct: 241 SLTNLT-----------DLDLA-------------------NNQISNLAPLSGLTKLTEL 270

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
            L +N+++    S +  L  +  L L+ N L    P   SNLK    + L +N ++   P
Sbjct: 271 KLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

Query: 772 PELGELSFLAIFNVSYNNLSG 792
             +  L+ L       N +S 
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.2 bits (196), Expect = 1e-15
 Identities = 66/356 (18%), Positives = 122/356 (34%), Gaps = 57/356 (16%)

Query: 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML 503
            L    ++ +    QIF     LA+ +   L     T    V   +   +  L      +
Sbjct: 2   PLGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI 58

Query: 504 SGQLPRWIGKFSNLDVLLMSRNSFEGDVSV-QLSNLEVARILDISENKLYGPLEFSSNHS 562
                  +   +NL  +  S N       +  L+ L     + ++ N++      + N +
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD---ILMNNNQIADITPLA-NLT 112

Query: 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLRGN 620
           +L  L   NN ++   P   L  + L  L+L  N  S    ++ L    ++L+ L   GN
Sbjct: 113 NLTGLTLFNNQITDIDPLKNL--TNLNRLELSSNTISDISALSGL----TSLQQLSF-GN 165

Query: 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN 680
            +     +PL +L  L  +DIS N ++         ++                      
Sbjct: 166 QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLT---------------------- 199

Query: 681 RESSQRVEVKFMAKNRYESYKG-DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSN 739
                 +E      N+        +L  +  L L+ N+L       +  L  +  L+L+N
Sbjct: 200 -----NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 740 NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVP 795
           N +S   P   S L     + L  N+++      L  L+ L    ++ N L    P
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP 304

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 1e-31
 Identities = 73/333 (21%), Positives = 121/333 (36%), Gaps = 38/333 (11%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
            ++L++G N           S   L  L L  N  S          NL NL  L L  NR
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNR 91

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA 246
           +   + +     L NL +L+I+EN+   LL     +L  L+ L++  N L   +     +
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLN 303
            L SLE L+L   +   S P   L++   L V +L  L    +   +F  L   +LKVL 
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLE 206

Query: 304 LRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363
           + H     T+     Y  +   + ++  NL    P   +++   L  + L  N ++    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS---- 261

Query: 364 LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLF 422
                       I  +             L  L  + +        + P     +  L  
Sbjct: 262 -----------TIEGSMLHE---------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRV 300

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
           L++S N  +  L +    S  +LE + L  N  
Sbjct: 301 LNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 2e-29
 Identities = 71/339 (20%), Positives = 121/339 (35%), Gaps = 46/339 (13%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI-CDLKNLVELNI 207
           T    L L  N       +     +  +LE L+L+ N +  S +  G   +L NL  L +
Sbjct: 32  TETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGL 87

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N    +     + L+ L  LD+S NK+   L   +  +L +L+ L + DN        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 268 SVLANHSRLEVFQLSR---LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
              +  + LE   L +     + TE    L    L VL LRH NI+       +  Y  +
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG--LIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGK 384
            +++S    +DT     L     L  + + +  LT                +   +    
Sbjct: 204 VLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLT---------------AVPYLAVRH- 246

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSCV 443
                   L  L +L++S N    +I  SM   + RL  + L        +  +      
Sbjct: 247 --------LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLN 296

Query: 444 SLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQF 479
            L  +N+S N     +  +F    ++  L  L L+ N  
Sbjct: 297 YLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (283), Expect = 2e-26
 Identities = 69/335 (20%), Positives = 123/335 (36%), Gaps = 25/335 (7%)

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
            +     R     + +GI        L++ +N    L     ++  +L  L+L+ N +S 
Sbjct: 15  AVLCHRKRFVA--VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR---LQVETENFPWLP 295
            +      NL +L  L L  N  +   PL V    S L    +S    + +    F  L 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 296 KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFN 355
              LK L +   ++     R          + L   NL  + PT  L +   L ++ L +
Sbjct: 129 --NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRH 185

Query: 356 NFLTG-NLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414
             +             L  L IS+  ++  +  N  L    L  L ++  +   ++P   
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLT-AVPYLA 243

Query: 415 -GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLV 470
             ++  L FL+LS N  S  +    L   + L+ + L        +   F     L  L 
Sbjct: 244 VRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLR 299

Query: 471 FLFLNDNQFTGRLEVGLLNA-SSLYVLDVSNNMLS 504
            L ++ NQ T  LE  + ++  +L  L + +N L+
Sbjct: 300 VLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 15/274 (5%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +    F     L  L L  NR +             L  L  L+I  N     L  +   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
           L +L SL +  N        ++    L +LE L L    +T S+  + +  L  L+ L +
Sbjct: 127 LYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRL 183

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
                + +       L  L+VL++S       +  + +  L +L  LS+   +   + P 
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT-AVPY 241

Query: 268 SVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
             + +   L    LS      +E      L +  L+ + L    ++   P   +     R
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLR--LQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
            +++S N L  T    +  +   LE + L +N L
Sbjct: 300 VLNVSGNQL-TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I          L VL L         +     + + L +LK+L I +  + +++ P    
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDY----SFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI-CDLKNLVELN 206
             +LTSL +   + +        + +L  L  L+LS N I+   I   +  +L  L E+ 
Sbjct: 223 GLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEIQ 278

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
           +   +   + P     L YLRVL++S N+L+  L  SV  ++ +LE L L  N   
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 65/360 (18%), Positives = 111/360 (30%), Gaps = 70/360 (19%)

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLN 475
               LDL  N     L +    S   LE + L+ N     +   F    NL  L  L L 
Sbjct: 33  ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN---NLFNLRTLGLR 88

Query: 476 DNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDV 531
            N+    + +G+    S+L  LD+S N +   L        NL  L +  N         
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 532 SVQLSNLEVARILDISENKLY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLT 589
              L++L     L + +  L        S     L  L   + +++     +  +  +L 
Sbjct: 148 FSGLNSL---EQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 590 TLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDISYNTLNG 648
            L++    +   +        NL +L +   NL   +P     HL  L  +++SYN ++ 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
              S                                                    L  +
Sbjct: 263 IEGSMLHE------------------------------------------------LLRL 274

Query: 709 TGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
             + L   +L   +       L  +  LN+S N L+      F ++   E++ L  N L 
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 50/339 (14%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDIS 547
           +   +LD+  N +          F +L+ L ++ N   + E      L NL   R L + 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL---RTLGLR 88

Query: 548 ENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFS----GN 601
            N+L   PL   +  S+L  L    N +   + + + Q    L +L++ DN+        
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 602 IAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM 661
            + L    ++L  L L   NL     E L HL  L ++ + +  +N      F  +    
Sbjct: 148 FSGL----NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL- 202

Query: 662 EKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721
                    L ++                    N            +T L ++   LT  
Sbjct: 203 -------KVLEIS----HWPYLDTMTPNCLYGLN------------LTSLSITHCNLT-A 238

Query: 722 IPSE-IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSF 779
           +P   + +L  +  LNLS N +S         L   + + L   +L   + P     L++
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNY 297

Query: 780 LAIFNVSYNNLSGTVPNKGQFANFDESNY---RGNPYLC 815
           L + NVS N L+ T+  +  F +           NP  C
Sbjct: 298 LRVLNVSGNQLT-TLE-ESVFHSVGNLETLILDSNPLAC 334

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 2e-30
 Identities = 73/347 (21%), Positives = 149/347 (42%), Gaps = 34/347 (9%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + ++      + +  L ++  +    +  +       L  L+ LN+  N   +  +  L+
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGIE------YLTNLEYLNLNGNQITD--ISPLS 85

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           +L  LT+L++  N  ++       L NL NL  L L+ + I+    +  + +L  +  LN
Sbjct: 86  NLVKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLN 138

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +  N         LSN+T L  L ++ +K+     ++ IANLT L  LSL  N  ++  P
Sbjct: 139 LGANHNLSD-LSPLSNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDISP 194

Query: 267 LSVLANHSRLEVFQLSRLQVET-ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
           L+ L +   L  F     Q+        + +  L  L + +  I+   P  L       +
Sbjct: 195 LASLTS---LHYFTAYVNQITDITPVANMTR--LNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           +++  N + D      +++ TKL+++ + +N ++ ++ + N+   L  L ++NN    + 
Sbjct: 248 LEIGTNQISDINA---VKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNED 303

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR 432
            E  G  L  L  L +SQN      P  +  + ++   D ++    +
Sbjct: 304 MEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 3e-30
 Identities = 79/401 (19%), Positives = 139/401 (34%), Gaps = 57/401 (14%)

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN 210
             +L       ++ F       +L       L    +T    +    +L+++ +L +   
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGE 54

Query: 211 EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
           +   +    +  LT L  L+L+ N+++    +S ++NL  L  L +  N   +   L  L
Sbjct: 55  KVASIQG--IEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISALQNL 109

Query: 271 ANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330
            N                          L+ L L   NIS   P  L        ++L  
Sbjct: 110 TN--------------------------LRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFG 390
           N+ +       L N T L  + +  + +     + N   +L  L ++ N           
Sbjct: 142 NHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLT-DLYSLSLNYNQIED--ISPLA 196

Query: 391 LILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450
             L  L Y     N      P  +  M RL  L + +N  + DL    L +   L ++ +
Sbjct: 197 S-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS--PLANLSQLTWLEI 250

Query: 451 SHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW 510
             N           +L KL  L +  NQ +  +   L N S L  L ++NN L  +    
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKL 551
           IG  +NL  L +S+N         L++L      D +   +
Sbjct: 307 IGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 5e-26
 Identities = 76/446 (17%), Positives = 138/446 (30%), Gaps = 103/446 (23%)

Query: 202 LVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
              L       + + P   ++L       L    ++  +       L S+  L +     
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV 56

Query: 262 QESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
                +  L N                          L+ LNL    I+   P       
Sbjct: 57  ASIQGIEYLTN--------------------------LEYLNLNGNQITDISP------- 83

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
                               L N  KL  +++  N +T                      
Sbjct: 84  --------------------LSNLVKLTNLYIGTNKITD--------------------- 102

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
                      L  L  L +++++     P  +  + ++  L+L +N+   DL    L++
Sbjct: 103 ----ISALQN-LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSN 153

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN 501
              L ++ ++ +           NL  L  L LN NQ      +  L  +SL+      N
Sbjct: 154 MTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASL--TSLHYFTAYVN 209

Query: 502 MLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILDISENKLYGPLEFSSN 560
            ++   P  +   + L+ L +  N          LS L     L+I  N++         
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTW---LEIGTNQISDINAVKDL 264

Query: 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620
            + L+ L   +N +S    + L   SQL +L L +N+       +I   +NL  L L  N
Sbjct: 265 -TKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 621 NLQGNIPEPLCHLRKLAIVDISYNTL 646
           ++      PL  L K+   D +   +
Sbjct: 322 HITD--IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  105 bits (264), Expect = 1e-24
 Identities = 68/403 (16%), Positives = 145/403 (35%), Gaps = 81/403 (20%)

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
           L E +   + + S    +      +E +  L ++    +  +    +    +LE++NL+ 
Sbjct: 21  LAEGIRAVLQKASVTDVVTQEE--LESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNG 75

Query: 453 NYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIG 512
           N           NL KL  L++  N+ T    +  L  ++L  L ++ + +S   P  + 
Sbjct: 76  NQITD--ISPLSNLVKLTNLYIGTNKITDISALQNL--TNLRELYLNEDNISDISP--LA 129

Query: 513 KFSNLDVLLMSRNSFEGDVSV--QLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570
             + +  L +  N    D+S    ++ L     L ++E+K+      + N + L  L  +
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNY---LTVTESKVKDVTPIA-NLTDLYSLSLN 185

Query: 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLRGNNLQGNIPE 628
            N +    P A L  + L       N+ +    +A++    + L +L +  N +      
Sbjct: 186 YNQIEDISPLASL--TSLHYFTAYVNQITDITPVANM----TRLNSLKIGNNKITD--LS 237

Query: 629 PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE 688
           PL +L +L  ++I  N ++    +   +                                
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKD-------------------------------- 263

Query: 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR 748
                           L  +  L++ SN+++    S +  L ++++L L+NN L      
Sbjct: 264 ----------------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 749 SFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
               L    ++ LS N +    P  L  LS +   + +   + 
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (256), Expect = 1e-23
 Identities = 67/355 (18%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
              L      I+   P       +     L   ++ D       +    +  + +    +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
             ++Q      NL +L ++ N  I  +     L   +L  L +  N    +   ++  + 
Sbjct: 57  A-SIQGIEYLTNLEYLNLNGNQ-ITDISPLSNL--VKLTNLYIGTNKI--TDISALQNLT 110

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
            L  L L+ +N S D+    L +   +  +NL  N+    +     N+  L +L + +++
Sbjct: 111 NLRELYLNEDNIS-DIS--PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK 166

Query: 479 FTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL 538
                 +  L  + LY L ++ N +    P  +   ++L       N         ++N+
Sbjct: 167 VKDVTPIANL--TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220

Query: 539 EVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF 598
                L I  NK+   L   +N S L +L    N +S    NA+   ++L  L++  N+ 
Sbjct: 221 TRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 599 SG--NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP 651
           S    + +L    S L +L L  N L     E +  L  L  + +S N +    P
Sbjct: 278 SDISVLNNL----SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 63/334 (18%), Positives = 122/334 (36%), Gaps = 32/334 (9%)

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           +      +   FP     +  +     L    +T  +     + ++  LV++    +  +
Sbjct: 5   LATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEK-VASI 59

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL 445
                L    L YL+++ N      P  +  + +L  L + +N  + D+    L +  +L
Sbjct: 60  QGIEYL--TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNL 112

Query: 446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG 505
             + L+ +           NL K+  L L  N     L   L N + L  L V+ + +  
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD 169

Query: 506 QLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSL 564
             P  I   ++L  L ++ N  E       L++L          N++   +   +N + L
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHY---FTAYVNQITD-ITPVANMTRL 223

Query: 565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLRGNNL 622
             L   NN ++   P  L   SQLT L++  N+ S    +  L    + L+ L +  N +
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDL----TKLKMLNVGSNQI 277

Query: 623 QGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656
                  L +L +L  + ++ N L          
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 4e-20
 Identities = 61/374 (16%), Positives = 136/374 (36%), Gaps = 57/374 (15%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
           L       ++  P              L        +  +   L  +  L +   +    
Sbjct: 5   LATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVASI 59

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVA 541
             +  L  ++L  L+++ N ++   P  +     L  L +  N          L+NL   
Sbjct: 60  QGIEYL--TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRE- 114

Query: 542 RILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG- 600
             L ++E+ +   +   +N + +  L    N    +  + L   + L  L + +++    
Sbjct: 115 --LYLNEDNISD-ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 601 -NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIP-SCFTNIS 658
             IA+L    ++L +L L  N ++     PL  L  L       N +    P +  T ++
Sbjct: 171 TPIANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLN 224

Query: 659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNEL 718
                      +L +     +N+ +     +  +A           L  +T L++ +N++
Sbjct: 225 -----------SLKI----GNNKITD----LSPLAN----------LSQLTWLEIGTNQI 255

Query: 719 TGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778
           +    + +  L ++  LN+ +N +S       +NL    S+ L+ N+L  +    +G L+
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 779 FLAIFNVSYNNLSG 792
            L    +S N+++ 
Sbjct: 312 NLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 29/206 (14%), Positives = 66/206 (32%), Gaps = 39/206 (18%)

Query: 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
             TL       +  I    +  +     +L+  ++          L  +  + ++   + 
Sbjct: 2   AATLATLPAPIN-QIFPDAD-LAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 648 GPIP-SCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706
                   TN+             L+L      N+ +     +  ++           L 
Sbjct: 58  SIQGIEYLTNLE-----------YLNLN----GNQITD----ISPLSN----------LV 88

Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
            +T L + +N++T    S +  L  +  L L+ + +S   P   +NL    S++L  N  
Sbjct: 89  KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN 144

Query: 767 NGQIPPELGELSFLAIFNVSYNNLSG 792
                  L  ++ L    V+ + +  
Sbjct: 145 -LSDLSPLSNMTGLNYLTVTESKVKD 169

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (312), Expect = 4e-30
 Identities = 64/397 (16%), Positives = 127/397 (31%), Gaps = 38/397 (9%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
           SL      +  LDLS N                  +L++LN+  N   E     L SL++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN 210
           L +L L  N   E       L+   ++E L  + N I+   +       +    + +  N
Sbjct: 82  LRTLDLNNNYVQE-------LLVGPSIETLHAANNNISR--VSCSR--GQGKKNIYLANN 130

Query: 211 EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
           +   L        + ++ LDL  N++       + A+  +LE+L+L  N   +   +   
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQ 187

Query: 271 ANHSRLEVFQLS--RLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
              ++L+   LS  +L      F       +  ++LR+  +   I + L++  +  + DL
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
             N             N +++   +    +         +  +P L          LP  
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 389 FGLILPELVYLDMSQNSFE-------GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
           F      L+ L   +++           +        R   +D     + R +       
Sbjct: 303 F---ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY-RTVIDQVTLR 358

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
             +   +       D Q+       A+L         
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 1e-29
 Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 35/440 (7%)

Query: 121 SRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVL 180
            ++  + KI  +  +S  ++L  L  S  ++  L L GN  S+       L     LE+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELL 63

Query: 181 DLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
           +LS N +        +  L  L  L++N N       Q L     +  L  ++N +S  +
Sbjct: 64  NLSSNVLYE---TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 241 PLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF--Q 298
             S        + + L +N              SR++   L   +++T NF  L      
Sbjct: 115 SCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L+ LNL++  I   +   + +    + +DLS N L    P    Q+   +  + L NN L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKL 226

Query: 359 TGNLQLPNSKRNLPHLV---ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415
                +  + R   +L    +  N F      +F      +  +          +     
Sbjct: 227 V---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNE 280

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPK----YMNLAKLVF 471
               +  L         DLP  F    ++L+    +     G    +      N A+   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 472 LFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDV 531
           +     Q+   ++   L   +   L+     L  Q+       + LD  L      + ++
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIEL 399

Query: 532 SVQLSNLEVARILDISENKL 551
                     ++L     + 
Sbjct: 400 QHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 3e-29
 Identities = 66/428 (15%), Positives = 129/428 (30%), Gaps = 40/428 (9%)

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
           +        + ++     L     +   ++ LDLS N LS  +  + +A  T LE L+L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
            N   E+  L  L+    L    L+   V+       P   ++ L+  + NIS       
Sbjct: 67  SNVLYETLDLESLST---LRTLDLNNNYVQE--LLVGP--SIETLHAANNNISRVSCSRG 119

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG--NLQLPNSKRNLPHLV 375
           Q     + I L++N +            ++++ + L  N +      +L  S   L HL 
Sbjct: 120 Q---GKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 376 ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLP 435
           +  N  I  +     ++  +L  LD+S N     + P       + ++ L +N     + 
Sbjct: 176 LQYNF-IYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 436 KHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYV 495
           K       +LE  +L  N F       +          +                +   +
Sbjct: 231 KAL-RFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPL 555
                      LP        L  L    ++                +L    ++     
Sbjct: 289 GHYGAYCCE-DLP--APFADRLIALKRKEHA----------------LLSGQGSETERLE 329

Query: 556 EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRAL 615
               N +  R +          I    L+     TL+ +       +++     + L   
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 616 LLRGNNLQ 623
           L +     
Sbjct: 390 LQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 1e-26
 Identities = 64/510 (12%), Positives = 160/510 (31%), Gaps = 72/510 (14%)

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           + +   N    ++  ++ + L      S+  +  +++ L L  N              S+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL------------SQ 48

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
           +    L+               +L++LNL    +  T+                      
Sbjct: 49  ISAADLAPFT------------KLELLNLSSNVLYETLD--------------------- 75

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
                 L++ + L  + L NN++    +L     ++  L  +NN+ I ++  +       
Sbjct: 76  ------LESLSTLRTLDLNNNYVQ---ELLVGP-SIETLHAANNN-ISRVSCS---RGQG 121

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
              + ++ N          G   R+ +LDL  N            S  +LE +NL +N+ 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
                   +  AKL  L L+ N+    +     +A+ +  + + NN L   + + +    
Sbjct: 182 --YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS 575
           NL+   +  N F    +++    +  R+  +++  +      +    ++  L  +     
Sbjct: 238 NLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 576 GTIPNAL------LQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP 629
             +P         L+  +   L  + +E    +       +  R +       +  I + 
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQV 355

Query: 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEV 689
               +    ++     L+  + +     +            + L    E+         +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 690 KFMAKNRYESYKGDVLKYMTGLDLSSNELT 719
               +  Y   +      +   D+  ++ T
Sbjct: 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (282), Expect = 2e-26
 Identities = 67/465 (14%), Positives = 135/465 (29%), Gaps = 26/465 (5%)

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVS 444
           + E             ++ +S + ++         +  LDLS N  S  +    L     
Sbjct: 2   IHEIKQN-GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           LE +NLS N           +L+ L  L LN+N         LL   S+  L  +NN +S
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

Query: 505 GQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLEFSSNHS 562
            ++     +      + ++ N       +        + LD+  N++      E +++  
Sbjct: 113 -RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNL 622
           +L +L    N +       +     L TLDL  N+ +  +       + +  + LR N L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 623 QGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRE 682
              I + L   + L   D+  N  +      F + +  ++      +   L    E+   
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT-VAKQTVKKLTGQNEEECT 284

Query: 683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD----IPSEIGYLGEIHALNLS 738
                           +   D L  +   + +     G     +  E         ++  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 739 NNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP---PELGELSFLAIFNVSYNNLSGTVP 795
                  I +     +   +++     L+ Q+        EL       V    L     
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 796 NKGQFANFDESNYRGNPYLCGPAVRKNCSSELPPTPATSAEEDES 840
            +           R           +N +            +   
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 41/347 (11%), Positives = 91/347 (26%), Gaps = 25/347 (7%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           +           L  LDL++N  +                ++ L+   N+ +   V   +
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISR--VS-CS 117

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
                 +++L  N  +     +        ++ LDL  N I      +       L  LN
Sbjct: 118 RGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +  N    +          L+ LDLSSNKL+  +      +   + ++SL +N       
Sbjct: 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKL-VLIE 230

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYI 326
              L     LE F L                  +V  +    +     +  +        
Sbjct: 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 327 DLSDNNLVD----TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFI 382
                   D         +     +  ++    +          ++     +        
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ-Y 348

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNN 429
             + +   L     + L+  + + +  +         L      +  
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 2e-29
 Identities = 57/315 (18%), Positives = 109/315 (34%), Gaps = 27/315 (8%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
           SL      +  LDLS N                  +L++LN+  N   E     L SL++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN 210
           L +L L  N   E       L+   ++E L  + N I+   +       +    + +  N
Sbjct: 82  LRTLDLNNNYVQE-------LLVGPSIETLHAANNNISR--VSCSR--GQGKKNIYLANN 130

Query: 211 EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
           +   L        + ++ LDL  N++       + A+  +LE+L+L  N   +   +   
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQ 187

Query: 271 ANHSRLEVFQLS--RLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
              ++L+   LS  +L      F       +  ++LR+  +   I + L++  +  + DL
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
             N             N +++   +    +         +  +P L          LP  
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 389 FGLILPELVYLDMSQ 403
           F   L  L +     
Sbjct: 303 FADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 4e-26
 Identities = 66/337 (19%), Positives = 117/337 (34%), Gaps = 30/337 (8%)

Query: 121 SRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVL 180
            ++  + KI  +  +S  ++L  L  S  ++  L L GN  S+       L     LE+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELL 63

Query: 181 DLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
           +LS N +        +  L  L  L++N N       Q L     +  L  ++N +S  +
Sbjct: 64  NLSSNVLYE---TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 241 PLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF--Q 298
             S        + + L +N              SR++   L   +++T NF  L      
Sbjct: 115 SCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L+ LNL++  I   +   + +    + +DLS N L    P    Q+   +  + L NN L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKL 226

Query: 359 TGNLQLPNSKRNLP---HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415
                +  + R      H  +  N F      +F      +  +          +     
Sbjct: 227 V---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNE 280

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
               +  L         DLP  F    ++L   +  H
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 8e-25
 Identities = 55/384 (14%), Positives = 127/384 (33%), Gaps = 69/384 (17%)

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           + +   N    ++  ++ + L      S+  +  +++ L L  N        + LA    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL-SQISAADLAP--- 56

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
                 ++L+                                        ++LS N L +
Sbjct: 57  -----FTKLE---------------------------------------LLNLSSNVLYE 72

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
           T     L++ + L  + L NN++    +L     ++  L  +NN+ I ++  +       
Sbjct: 73  TLD---LESLSTLRTLDLNNNYVQ---ELLVGP-SIETLHAANNN-ISRVSCS---RGQG 121

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
              + ++ N          G   R+ +LDL  N            S  +LE +NL +N+ 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
                   +  AKL  L L+ N+    +     +A+ +  + + NN L   + + +    
Sbjct: 182 --YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS 575
           NL+   +  N F    +++    +  R+  +++  +      +    ++  L  +     
Sbjct: 238 NLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 576 GTIPNALLQSSQLTTLDLRDNEFS 599
             +P           + L  +   
Sbjct: 297 EDLPAPFADR----LIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 4e-24
 Identities = 53/284 (18%), Positives = 102/284 (35%), Gaps = 21/284 (7%)

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
           +        + ++     L     +   ++ LDLS N LS  +  + +A  T LE L+L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
            N   E+  L  L+    L    L+   V+       P   ++ L+  + NIS       
Sbjct: 67  SNVLYETLDLESLST---LRTLDLNNNYVQE--LLVGP--SIETLHAANNNISRVSCSRG 119

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG--NLQLPNSKRNLPHLV 375
           Q     + I L++N +            ++++ + L  N +      +L  S   L HL 
Sbjct: 120 Q---GKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 376 ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLP 435
           +  N  I  +     ++  +L  LD+S N     + P       + ++ L +N     + 
Sbjct: 176 LQYNF-IYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 436 KHFLTSCVSLEFMNLSHNYFDGQIFPK-YMNLAKLVFLFLNDNQ 478
           K       +LE  +L  N F        +    ++  +     +
Sbjct: 231 KAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 60/329 (18%), Positives = 107/329 (32%), Gaps = 47/329 (14%)

Query: 488 LNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARIL 544
            N +   +  V+++ L   L        N+  L +S N             + LE+   L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL---L 63

Query: 545 DISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAH 604
           ++S N LY  L+  S  S+LR L  +NN +       LL    + TL   +N    NI+ 
Sbjct: 64  NLSSNVLYETLDLESL-STLRTLDLNNNYVQ-----ELLVGPSIETLHAANN----NISR 113

Query: 605 LINED-SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663
           +        + + L  N +            ++  +D+  N ++                
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------- 157

Query: 664 GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV-LKYMTGLDLSSNELTGDI 722
                      +   +   SS  +E   +  N     KG V    +  LDLSSN+L   +
Sbjct: 158 ----------TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 723 PSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAI 782
             E      +  ++L NN L   I ++    +  E  DL  N  +              +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 783 FNVSYNNLSGTVPNKGQFANFDESNYRGN 811
             V+   +        +        + G 
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 43/257 (16%), Positives = 89/257 (34%), Gaps = 25/257 (9%)

Query: 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAK 468
           +I        R     ++ ++           S  +++ ++LS N              K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS--GQLPR--------------WIG 512
           L  L L+ N     L++  L  S+L  LD++NN +      P                  
Sbjct: 60  LELLNLSSNVLYETLDLESL--STLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 513 KFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG--PLEFSSNHSSLRYLFPH 570
           +      + ++ N       +        + LD+  N++      E +++  +L +L   
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPL 630
            N +   +    +  ++L TLDL  N+ +  +       + +  + LR N L   I + L
Sbjct: 178 YNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 631 CHLRKLAIVDISYNTLN 647
              + L   D+  N  +
Sbjct: 234 RFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 20/240 (8%)

Query: 556 EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRAL 615
           E   N +  +     ++SL   + +    +  +  LDL  N  S   A  +   + L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 616 LLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLAL 675
            L  N L       L  L  L  +D++ N +   +    +  +L        N+   ++ 
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-LLVGPSIETLHA----ANNNISRVSC 116

Query: 676 PAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTG---LDLSSNELTG-DIPSEIGYLGE 731
                    Q  +  ++A N+    +       +    LDL  NE+   +          
Sbjct: 117 ------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 732 IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           +  LNL  NF+   +          +++DLS NKL   + PE    + +   ++  N L 
Sbjct: 171 LEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 21/219 (9%)

Query: 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA 637
           I       ++     + D+     +A L     N++ L L GN L       L    KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 638 IVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR----ESSQRVEVKFMA 693
           ++++S N L        +  +L          TL L     +N          +E    A
Sbjct: 62  LLNLSSNVLYE-TLDLESLSTL---------RTLDLN----NNYVQELLVGPSIETLHAA 107

Query: 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG-SIPRSFSN 752
            N          +    + L++N++T     + G    +  L+L  N +   +     ++
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 753 LKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
               E ++L YN +   +  ++   + L   ++S N L+
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 40/175 (22%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           I ++   V F +L  LDLS N+                                + P   
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-----------------------------AFMGPEFQ 211

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           S   +T + L+ N         K L   +NLE  DL GN      +       + +  + 
Sbjct: 212 SAAGVTWISLRNNKLVL---IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
               +      +    +  L           G      +    +   ++L  +H 
Sbjct: 269 KQTVKKLTGQNEEECTVPTLG--------HYGAYCCEDLPAPFADRLIALGHHHH 315

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (304), Expect = 4e-29
 Identities = 81/388 (20%), Positives = 139/388 (35%), Gaps = 42/388 (10%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
             +  + L  NS +E   +      L++L+ L +        +       L +L+ L ++
Sbjct: 30  AHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKL-SGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
            N+F  L     + L  L VL L+   L    L  +    LTSLE L L DN+ ++  P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 268 SVLANHSRLEVFQLSR---LQVETENFPWLPKFQLKVLNL--------RHCNISGTIPRF 316
           S   N  R  V  L+      +  E+          +L L            +       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 317 LQYQYDFRYIDLSDNNLVDTFPTWL--LQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHL 374
                    +DLS N   ++           TK++ + L N++  G+     + ++    
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-- 265

Query: 375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRD 433
              N +F        GL    +   D+S++    ++  S+  +   L  L L+ N  ++ 
Sbjct: 266 ---NFTF-------KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINK- 313

Query: 434 LPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-N 489
           +  +       L  +NLS N     D ++F    NL KL  L L+ N     L       
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMF---ENLDKLEVLDLSYNHIR-ALGDQSFLG 369

Query: 490 ASSLYVLDVSNNMLSGQLPRWIGKFSNL 517
             +L  L +  N L   +P   G F  L
Sbjct: 370 LPNLKELALDTNQLKS-VPD--GIFDRL 394

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (263), Expect = 5e-24
 Identities = 75/384 (19%), Positives = 130/384 (33%), Gaps = 35/384 (9%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +N + F   Q+L  L +          N  +   R L  L IL + YN F +        
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTF---RGLSSLIILKLDYNQFLQLETGAFNG 101

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELN 206
           L +L  L L   +             L +LE+L L  N I   +        ++    L+
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLD 160

Query: 207 INENEFDGLLPQCLSNLT--YLRVLDLSSNKLS-------GNLPLSVIANLTSLEYLSLF 257
           +  N+   +  + L N    +  +L LSS  L        G          TS+  L L 
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
            N F+ES           +   ++  L +                +  +    G     +
Sbjct: 221 GNGFKESMAKRF---FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK----RNLPH 373
           +        DLS + +       +  + T LE + L  N +    ++ ++      +L  
Sbjct: 278 K------TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN---KIDDNAFWGLTHLLK 327

Query: 374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSR 432
           L +S N F+G +       L +L  LD+S N    ++       +  L  L L +N    
Sbjct: 328 LNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS 385

Query: 433 DLPKHFLTSCVSLEFMNLSHNYFD 456
            +P        SL+ + L  N +D
Sbjct: 386 -VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (251), Expect = 2e-22
 Identities = 78/436 (17%), Positives = 144/436 (33%), Gaps = 71/436 (16%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           ++  ++++ N    L     S L  L+ L +        +  +    L+SL  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 261 FQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNI-SGTIPR-FLQ 318
           F +            LE    + L              L+VL L  CN+    +   F +
Sbjct: 91  FLQ------------LETGAFNGLA------------NLEVLTLTQCNLDGAVLSGNFFK 126

Query: 319 YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISN 378
                  + L DNN+    P     N  +  ++ L  N +                 I  
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SICE 171

Query: 379 NSFIGKLPENF-GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
              +    ++F  L L  +   DM++         +      +  LDLS N F   + K 
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 438 FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497
           F  +    +  +L  +           +     F   ++  F G      L AS +   D
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMG----SSFGHTNFKDPDNFTFKG------LEASGVKTCD 281

Query: 498 VSNNMLSGQLPRWI-GKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDISENKLYG 553
           +S + +   L + +   F++L+ L +++N     + +    L++L     L++S+N L  
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK---LNLSQNFLGS 337

Query: 554 PLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFS----GNIAHLIN 607
                  N   L  L    N +   + +        L  L L  N+      G    L  
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-- 394

Query: 608 EDSNLRALLLRGNNLQ 623
             ++L+ + L  N   
Sbjct: 395 --TSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 54/296 (18%), Positives = 111/296 (37%), Gaps = 35/296 (11%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           +++ + F P   L +L L DN  +  +    +    ++++  +L++ +N         L 
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVKSICEEDLL 175

Query: 147 SLTS--LTSLFLQGNSFSEGFKHNKGLV------NLRNLEVLDLSGNRITGSLIMQGICD 198
           +      T L L   +  +  ++  G           ++  LDLSGN      + +   D
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFD 234

Query: 199 LKNLVEL-----NINENEFDGLLPQCLSNL----------TYLRVLDLSSNKLSGNLPLS 243
                ++     + + N           +           + ++  DLS +K+   L  S
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKS 293

Query: 244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLK 300
           V ++ T LE L+L  N        +     + L    LS+     +++  F  L K  L+
Sbjct: 294 VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK--LE 350

Query: 301 VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
           VL+L + +I     +      + + + L  N L  + P  +    T L+ ++L  N
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 90/432 (20%), Positives = 148/432 (34%), Gaps = 74/432 (17%)

Query: 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPK-YMNLA 467
            +P  + Y      +DLS N+ +  L +   +    L+F+ +        I    +  L+
Sbjct: 27  ELPAHVNY------VDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 468 KLVFLFLNDNQFTGRLEVGLLNA-SSLYVLDVSNNML-SGQLPRWIGKFSNLDVLLMSRN 525
            L+ L L+ NQF  +LE G  N  ++L VL ++   L    L                 N
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------N 123

Query: 526 SFEGDVSVQLSNLEVARILDISENKLY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNAL- 582
            F+      L++LE+   L + +N +    P  F  N      L    N +       L 
Sbjct: 124 FFKP-----LTSLEM---LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 583 -LQSSQLTTLDLRDN--------EFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
             Q    T L L                      +++++  L L GN  + ++ +     
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 634 RKLAIV-----DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE 688
                +       SYN  +    + F +   +  KG   +   +  L    ++  +    
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL--SKSKIFALLKS 293

Query: 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIP 747
           V F                +  L L+ NE+   I       L  +  LNLS NFL     
Sbjct: 294 V-F-----------SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 748 RSFSNLKMTESMDLSYNKLNGQIPPEL-GELSFLAIFNVSYNNLSGTVPNKGQFANFDES 806
           R F NL   E +DLSYN +   +  +    L  L    +  N L  +VP+ G F      
Sbjct: 341 RMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPD-GIFDRLTSL 397

Query: 807 NY---RGNPYLC 815
                  NP+ C
Sbjct: 398 QKIWLHTNPWDC 409

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 4e-29
 Identities = 70/412 (16%), Positives = 135/412 (32%), Gaps = 72/412 (17%)

Query: 119 NTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLE 178
           +  +       ++I   + +        +L +   +  + ++  +       L + R +E
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 72

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
           +L+L+  +I   +          + +L +  N    L P    N+  L VL L  N LS 
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQ 298
           +LP  +  N   L  LS+ +N                     L R++ +T  F       
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNN--------------------NLERIEDDT--FQATT--S 166

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           L+ L L    ++                 +  + +              L    +  N L
Sbjct: 167 LQNLQLSSNRLT----------------HVDLSLI------------PSLFHANVSYNLL 198

Query: 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
           +    L      +  L  S+NS I  +      +  EL  L +  N+   +    +    
Sbjct: 199 S---TLAIP-IAVEELDASHNS-INVVRGP---VNVELTILKLQHNNL--TDTAWLLNYP 248

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
            L+ +DLS N     +  H       LE + +S+N     +      +  L  L L+ N 
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 479 FTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD 530
               +E        L  L + +N +   L   +     L  L +S N ++ +
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 2e-28
 Identities = 71/364 (19%), Positives = 133/364 (36%), Gaps = 33/364 (9%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
            +      ++   ++               S +Q+++LN+      E          ++ 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
            L++  N+            N+  L VL L  N ++ SL      +   L  L+++ N  
Sbjct: 97  KLYMGFNAIRYL--PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153

Query: 213 DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
           + +        T L+ L LSSN+L+ ++ LS    + SL + ++  N       LS LA 
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNL------LSTLAI 203

Query: 273 HSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
              +E    S   +     P   +  L +L L+H N++      L Y      +DLS N 
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLT-DTAWLLNYP-GLVEVDLSYNE 259

Query: 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI---SNNSFIGKLPENF 389
           L +           +LE +++ NN L     L    + +P L +   S+N  +  +  N 
Sbjct: 260 L-EKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNH-LLHVERNQ 314

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449
                 L  L +  NS   ++  S      L  L LS N++  +  +    +       +
Sbjct: 315 PQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

Query: 450 LSHN 453
              +
Sbjct: 371 ADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 1e-22
 Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 99/444 (22%)

Query: 202 LVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
             +++I+    D         L   +++   ++ +   LP +++ +   +E L+L D   
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 81

Query: 262 QESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY 321
           +E                      ++T  F +     ++ L +    I    P   Q   
Sbjct: 82  EE----------------------IDTYAFAYAH--TIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
               + L  N+L  + P  +  N  KL  + + NN L                       
Sbjct: 118 LLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE---------------------- 154

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS 441
             ++ ++       L  L +S N     +  S+  +  L   ++S N  S       L  
Sbjct: 155 --RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST------LAI 203

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVG-LLNASSLYVLDVSN 500
            +++E ++ SHN     +    +   +L  L L  N  T   +   LLN   L  +D+S 
Sbjct: 204 PIAVEELDASHNSI--NVVRGPV-NVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSY 257

Query: 501 NMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSN 560
           N L   +     K   L+ L +S N        +L  L                L     
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNN--------RLVAL---------------NLYGQPI 294

Query: 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED--SNLRALLLR 618
             +L+ L   +N L   +     Q  +L  L L  N         +       L+ L L 
Sbjct: 295 -PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-----LKLSTHHTLKNLTLS 347

Query: 619 GNNLQGN-IPEPLCHLRKLAIVDI 641
            N+   N +     ++ + A+ D 
Sbjct: 348 HNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 67/419 (15%), Positives = 135/419 (32%), Gaps = 84/419 (20%)

Query: 356 NFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM- 414
             +  NLQ      ++   + + + + G       + L     +    ++    +P ++ 
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFG----FEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVF 471
               ++  L+L+      ++  +      +++ + +  N   Y    +F    N+  L  
Sbjct: 66  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTV 121

Query: 472 LFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD 530
           L L  N  +  L  G+  N   L  L +SNN L           ++L  L +S N     
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 178

Query: 531 VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTT 590
             V LS +      ++S N L       +   ++  L   +NS++  +   +     LT 
Sbjct: 179 -HVDLSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSIN-VVRGPVNVE--LTI 230

Query: 591 LDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648
           L L+ N  +    + +       L  + L  N L+  +  P   +++L  + IS N L  
Sbjct: 231 LKLQHNNLTDTAWLLNY----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
            +                                                      +  +
Sbjct: 287 -LNLYGQP------------------------------------------------IPTL 297

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
             LDLS N L   +         +  L L +N +      +   LK   ++ LS+N  +
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 72/358 (20%), Positives = 117/358 (32%), Gaps = 53/358 (14%)

Query: 369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSS 427
            N   +   N++ + KLP        ++  L+++    E  I      Y   +  L +  
Sbjct: 45  NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 428 NNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLE 484
           N     LP H   +   L  + L  N        IF    N  KL  L +++N    R+E
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIF---HNTPKLTTLSMSNNNLE-RIE 157

Query: 485 VGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARI 543
                  +SL  L +S+N L+  +   +    +L    +S N         L+       
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209

Query: 544 LDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603
           LD S N +   +    N   L  L   +N+L  T    LL    L  +DL  NE    + 
Sbjct: 210 LDASHNSI-NVVRGPVN-VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663
           H   +   L  L +  N L   +      +  L ++D+S+N L     +      L    
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL---- 320

Query: 664 GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721
                  L L                     N   + K      +  L LS N+   +
Sbjct: 321 -----ENLYLD-------------------HNSIVTLKLSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 50/263 (19%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I    F     L  L LS NR         +     +  L   N+ YN  +      L  
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-------HVDLSLIPSLFHANVSYNLLST-----LAI 203

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
             ++  L    NS +              L +L L  N +T       + +   LVE+++
Sbjct: 204 PIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTD---TAWLLNYPGLVEVDL 255

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           + NE + ++      +  L  L +S+N+L   L       + +L+ L L  N        
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN-LYGQPIPTLKVLDLSHN-------- 305

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                        L  ++     F      +L+ L L H +I  T+   L   +  + + 
Sbjct: 306 ------------HLLHVERNQPQFD-----RLENLYLDHNSIV-TLK--LSTHHTLKNLT 345

Query: 328 LSDNNLVDTFPTWLLQNNTKLEI 350
           LS N+        L +N  +  +
Sbjct: 346 LSHNDWDCNSLRALFRNVARPAV 368

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 8e-17
 Identities = 68/423 (16%), Positives = 125/423 (29%), Gaps = 101/423 (23%)

Query: 399 LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YF 455
           + +   + +         +     +   ++   + LP   L S   +E +NL+       
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEI 84

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKF 514
           D   F        +  L++  N     L   +  N   L VL +  N LS  LPR     
Sbjct: 85  DTYAFA---YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPR----- 134

Query: 515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNS 573
                       F          L     L +S N L     +     +SL+ L   +N 
Sbjct: 135 ----------GIFHN-----TPKLTT---LSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
           L+  +  +L+ S  L   ++  N  S      +     +  L    N++   +  P+   
Sbjct: 177 LT-HVDLSLIPS--LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--N 225

Query: 634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693
            +L I+ + +N L                                 N             
Sbjct: 226 VELTILKLQHNNLT--------------------------DTAWLLN------------- 246

Query: 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIPRSFSN 752
                         +  +DLS NEL   I       +  +  L +SNN L  ++      
Sbjct: 247 -----------YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

Query: 753 LKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNP 812
           +   + +DLS+N L   +     +   L    + +N++  T+                N 
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHND 350

Query: 813 YLC 815
           + C
Sbjct: 351 WDC 353

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (302), Expect = 5e-29
 Identities = 92/546 (16%), Positives = 179/546 (32%), Gaps = 101/546 (18%)

Query: 222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
           + T+L+     S+ L+  +P+    N+ S        + ++ + P               
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQ--------- 57

Query: 282 SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWL 341
              ++           Q   L L +  +S ++P           +  S N+L    P  L
Sbjct: 58  --REMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPE-L 109

Query: 342 LQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDM 401
            Q+   L +       L+           L +L +SNN  + KLPE        L  +D+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQ-LEKLPELQNS--SFLKIIDV 160

Query: 402 SQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFP 461
             NS +  +P        L F+   +N    +LP+  L +   L  +   +N    +  P
Sbjct: 161 DNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSL--KKLP 211

Query: 462 KYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLL 521
                  L  +   +N      E+  L    L  +   NN+L   LP       +L+ L 
Sbjct: 212 D--LPLSLESIVAGNNILEELPELQNL--PFLTTIYADNNLLK-TLPDLPP---SLEALN 263

Query: 522 MSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNA 581
           +  N    D+     +L     LD+SEN        S    +L YL   +N +  ++ + 
Sbjct: 264 VRDNYLT-DLPELPQSL---TFLDVSENIF---SGLSELPPNLYYLNASSNEIR-SLCDL 315

Query: 582 LLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI 641
                 L  L++ +N     +  L      L  L+   N+L   +PE   +L++L    +
Sbjct: 316 P---PSLEELNVSNN----KLIELPALPPRLERLIASFNHLA-EVPELPQNLKQL---HV 364

Query: 642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYK 701
            YN L    P    ++       +   ++    +P                         
Sbjct: 365 EYNPLRE-FPDIPESVE------DLRMNSHLAEVPEL----------------------- 394

Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
               + +  L + +N L  + P     + +   L +++  +      +       E    
Sbjct: 395 ---PQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 762 SYNKLN 767
            ++  +
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 1e-27
 Identities = 102/517 (19%), Positives = 178/517 (34%), Gaps = 88/517 (17%)

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQ------------ 194
           S T L       ++ +E         N+++      + +    +                
Sbjct: 9   SNTFLQEPLRHSSNLTEM---PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
             C  +   EL +N       LP+   +L     L  S N L+  LP  +  +L SL   
Sbjct: 66  RDCLDRQAHELELNNLGLSS-LPELPPHLES---LVASCNSLT-ELP-ELPQSLKSLLVD 119

Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF----QLKVLNLRHCNIS 310
           +       +  PL        LE   +S  Q+E      LP+      LK++++ + ++ 
Sbjct: 120 NNNLKALSDLPPL--------LEYLGVSNNQLEK-----LPELQNSSFLKIIDVDNNSLK 166

Query: 311 GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRN 370
             +P          +I   +N L +  P   LQN   L  ++  NN L    +LP+   +
Sbjct: 167 -KLPDLPP---SLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSLK---KLPDLPLS 216

Query: 371 LPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNF 430
           L  +V  NN  + +LPE     LP L  +    N  + ++P     +E L   D    + 
Sbjct: 217 LESIVAGNNI-LEELPELQN--LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

Query: 431 SRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA 490
                        SL F+++S N F G    +      L +L  + N+     +      
Sbjct: 273 PELPQ--------SLTFLDVSENIFSG--LSEL--PPNLYYLNASSNEIRSLCD----LP 316

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550
            SL  L+VSNN L  +LP        L+ L+ S N    +V     NL   + L +  N 
Sbjct: 317 PSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNL---KQLHVEYNP 368

Query: 551 LYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDS 610
           L    EF     S+  L  +++     +P        L  L +  N     +    +   
Sbjct: 369 LR---EFPDIPESVEDLRMNSHLAE--VPELP---QNLKQLHVETN----PLREFPDIPE 416

Query: 611 NLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
           ++  L +    +            KL      ++  +
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 5e-25
 Identities = 87/482 (18%), Positives = 157/482 (32%), Gaps = 98/482 (20%)

Query: 95  PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSL 154
             ++ H L+L++            +       L+ L    NS    L  L  SL SL   
Sbjct: 69  LDRQAHELELNNLGLS--------SLPELPPHLESLVASCNSL-TELPELPQSLKSLLVD 119

Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG 214
                + S+             LE L +S N++     +  + +   L  ++++ N    
Sbjct: 120 NNNLKALSD---------LPPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLKK 167

Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274
            LP    +L +   +   +N+L     L  + NL  L  +   +N  ++   L       
Sbjct: 168 -LPDLPPSLEF---IAAGNNQLEE---LPELQNLPFLTAIYADNNSLKKLPDLP------ 214

Query: 275 RLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
                                   L+ +   +  +       LQ       I   +N L 
Sbjct: 215 ----------------------LSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILP 394
            T P         LE + + +N+LT    LP   ++L  L +S N     L E    + P
Sbjct: 251 -TLPDLP----PSLEALNVRDNYLT---DLPELPQSLTFLDVSENI-FSGLSE----LPP 297

Query: 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY 454
            L YL+ S N    S+         L  L++S+N    +LP         LE +  S N+
Sbjct: 298 NLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPA----LPPRLERLIASFNH 348

Query: 455 FDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKF 514
                 P+      L  L +  N              S+  L +++++    +P      
Sbjct: 349 L--AEVPE--LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMNSHLAE--VPELPQ-- 396

Query: 515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH-SSLRYLFPHNNS 573
            NL  L +  N    +      ++E    L ++  ++  P EF+      L      ++ 
Sbjct: 397 -NLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 574 LS 575
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 8e-24
 Identities = 87/482 (18%), Positives = 155/482 (32%), Gaps = 111/482 (23%)

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNL 362
            LRH +    +P   +          + +      P        ++ +  L +       
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLD---- 70

Query: 363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLF 422
                 R    L ++N   +  LPE      P L  L  S NS    +P     ++ LL 
Sbjct: 71  ------RQAHELELNNLG-LSSLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
            + +    S   P         LE++ +S+N    +  P+  N + L  + +++N    +
Sbjct: 119 DNNNLKALSDLPP--------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-K 167

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVAR 542
           L        SL  +   NN L  +LP  +     L  +    NS +  +     +LE   
Sbjct: 168 LPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLES-- 219

Query: 543 ILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602
            +    N L    E   N   L  ++  NN L  T+P+       L  L++RDN     +
Sbjct: 220 -IVAGNNILEELPELQ-NLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDN----YL 269

Query: 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662
             L     +L  L +  N     + E   +L  L   + S N +   +     +      
Sbjct: 270 TDLPELPQSLTFLDVSENIFS-GLSELPPNLYYL---NASSNEIRS-LCDLPPS------ 318

Query: 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722
                                                        +  L++S+N+L  ++
Sbjct: 319 ---------------------------------------------LEELNVSNNKLI-EL 332

Query: 723 PSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAI 782
           P+    L     L  S N L+  +P    NLK    + + YN L  + P     +  L +
Sbjct: 333 PALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 384

Query: 783 FN 784
            +
Sbjct: 385 NS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 59/361 (16%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
                 L ++D+ +N  +                L+ +  G N   E  +P L +L  LT
Sbjct: 149 LQNSSFLKIIDVDNNSLK--------KLPDLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
           +++   NS  +            +LE +    N +     +  + +L  L  +  + N  
Sbjct: 199 AIYADNNSLKKLPDL------PLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLL 249

Query: 213 DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
              LP    +L  L V D     L       +  +LT L+      +   E  P      
Sbjct: 250 KT-LPDLPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLSELPP------ 297

Query: 273 HSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
              L     S  ++ +     LP   L+ LN+ +  +   +P           +  S N+
Sbjct: 298 --NLYYLNASSNEIRS--LCDLPP-SLEELNVSNNKLI-ELPALPP---RLERLIASFNH 348

Query: 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLI 392
           L    P         L+ + +  N L    + P+   ++  L ++++  + ++PE    +
Sbjct: 349 LA-EVPELP----QNLKQLHVEYNPLR---EFPDIPESVEDLRMNSH--LAEVPE----L 394

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
              L  L +  N      P        +  L ++S     D  +    +   LE     H
Sbjct: 395 PQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVV-DPYEFAHETTDKLEDDVFEH 449

Query: 453 N 453
           +
Sbjct: 450 H 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 57/339 (16%), Positives = 110/339 (32%), Gaps = 44/339 (12%)

Query: 459 IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLD 518
           I P+ ++   L     + +  T  + V   N  S      + +      P   G+   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 519 VLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI 578
           V  +                  A  L+++   L            L  L    NSL+  +
Sbjct: 62  VSRLRDCLDRQ-----------AHELELNNLGLS---SLPELPPHLESLVASCNSLT-EL 106

Query: 579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAI 638
           P        L   +      S            L  L +  N L+  +PE L +   L I
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLPE-LQNSSFLKI 157

Query: 639 VDISYNTLNGPIPSCFTNI-SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY 697
           +D+  N+L   +P    ++  +        N    L        ++   +   +   N  
Sbjct: 158 IDVDNNSLKK-LPDLPPSLEFIAA----GNNQLEEL-----PELQNLPFLTAIYADNNSL 207

Query: 698 ESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTE 757
           +    D+   +  +   +N L      E+  L  +  +   NN L  ++P    +L+   
Sbjct: 208 KKLP-DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE--- 260

Query: 758 SMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796
           ++++  N L   +P     L+FL +    ++ LS   PN
Sbjct: 261 ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 54/279 (19%), Positives = 88/279 (31%), Gaps = 50/279 (17%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
            L      L  +   +N  E   E +      +L  L  +    N   ++L  L  SL +
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQ------NLPFLTTIYADNNLL-KTLPDLPPSLEA 261

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRN-----------LEVLDLSGNRITGSLIMQGICDL 199
           L           E  +    L    N           L  L+ S N I  SL        
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDL----P 316

Query: 200 KNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
            +L ELN++ N+    LP     L     L  S N L+      V     +L+ L +  N
Sbjct: 317 PSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLA-----EVPELPQNLKQLHVEYN 367

Query: 260 HFQESFPLSVLANHSRLEVFQLSRLQV--ETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
                FP              +  L++       P LP+  LK L++    +    P   
Sbjct: 368 PL-REFP---------DIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNPLR-EFPDIP 415

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
           +       + ++   +VD    +  +   KLE     ++
Sbjct: 416 E---SVEDLRMNSERVVD-PYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 30/160 (18%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
           SL      L  L++S+N+                 +L+ L   +N   E    +     +
Sbjct: 311 SLCDLPPSLEELNVSNNKLI--------ELPALPPRLERLIASFNHLAE----VPELPQN 358

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLR-------------NLEVLDLSGNRITGSLIMQGIC 197
           L  L ++ N   E     + + +LR             NL+ L +  N +          
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDI--- 414

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
             +++ +L +N                 L       +   
Sbjct: 415 -PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 2e-28
 Identities = 70/403 (17%), Positives = 134/403 (33%), Gaps = 47/403 (11%)

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
                   +  +  ++        + L N +++    + +   L    +   + +  LN+
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 82

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           N+ + + +     +    ++ L +  N +   LP  V  N+  L  L L  N        
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-------- 133

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                        LS L      F   PK  L  L++ + N+        Q     + + 
Sbjct: 134 ------------DLSSLPRGI--FHNTPK--LTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPE 387
           LS N L       L+ +   L    +  N L+    L      +  L  S+NS I  +  
Sbjct: 178 LSSNRL-THVDLSLIPS---LFHANVSYNLLS---TLAIP-IAVEELDASHNS-INVVRG 228

Query: 388 NFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEF 447
               +  EL  L +  N+   +    +     L+ +DLS N     +  H       LE 
Sbjct: 229 P---VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLER 282

Query: 448 MNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQL 507
           + +S+N     +      +  L  L L+ N     +E        L  L + +N +   L
Sbjct: 283 LYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TL 339

Query: 508 PRWIGKFSNLDVLLMSRNSFEGDVSVQL-SNLEVARILDISEN 549
              +     L  L +S N ++ +    L  N+    + D  ++
Sbjct: 340 K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 8e-27
 Identities = 83/519 (15%), Positives = 169/519 (32%), Gaps = 45/519 (8%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
            +      ++   ++               S +Q+++LN+      E          ++ 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
            L++  N+            N+  L VL L  N ++ SL      +   L  L+++ N  
Sbjct: 103 KLYMGFNAIRYL--PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 159

Query: 213 DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
           + +        T L+ L LSSN+L+ ++ LS    + SL + ++  N       LS LA 
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNL------LSTLAI 209

Query: 273 HSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
              +E    S   +     P   +  L +L L+H N++      L Y      +DLS N 
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLT-DTAWLLNYP-GLVEVDLSYNE 265

Query: 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI---SNNSFIGKLPENF 389
           L +           +LE +++ NN L     L    + +P L +   S+N  +  +  N 
Sbjct: 266 L-EKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNH-LLHVERNQ 320

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449
                 L  L +  NS   ++         L  L LS N++  +  +    +       +
Sbjct: 321 PQ-FDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376

Query: 450 LSHNYFDGQIFPK-------YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNM 502
              +                       +  ++       +++      S+   ++   ++
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSL 436

Query: 503 LSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS 562
                 +        + L    N    +V  QL+N ++ +   +         E  +N  
Sbjct: 437 SHYITQQGGVPLQGNEQLEAEVNELRAEVQ-QLTNEQIQQEQLLQGL----HAEIDTNLR 491

Query: 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGN 601
             R         S  +        +     LR+ +    
Sbjct: 492 RYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRT 530

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 8e-27
 Identities = 84/505 (16%), Positives = 166/505 (32%), Gaps = 43/505 (8%)

Query: 130 LNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG 189
           ++I   + +        +L +   +  + ++  +       L + R +E+L+L+  +I  
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIE- 88

Query: 190 SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLT 249
            +          + +L +  N    L P    N+  L VL L  N LS +LP  +  N  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147

Query: 250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNI 309
            L  LS+ +N+  E          + L+  QLS  ++   +   +P   L   N+ +  +
Sbjct: 148 KLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLFHANVSYNLL 204

Query: 310 SGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKR 369
           S      L        +D S N++ +     +      L I+ L +N LT +     +  
Sbjct: 205 S-----TLAIPIAVEELDASHNSI-NVVRGPVNVE---LTILKLQHNNLT-DTAWLLNYP 254

Query: 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNN 429
            L  + +S N  + K+  +  + +  L  L +S N    ++      +  L  LDLS N+
Sbjct: 255 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 430 FSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG-RLEVGLL 488
               + ++       LE + L HN               L  L L+ N +    L     
Sbjct: 313 L-LHVERNQP-QFDRLENLYLDHNSI--VTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 367

Query: 489 NASSLYVLDVSNNMLSGQ---------------LPRWIGKFSNLDVLLMSRNSFEGDVSV 533
           N +   V D   +                    L R +   +   V+   + +     + 
Sbjct: 368 NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSAT 427

Query: 534 QLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593
              N   +    I++             + +  L      L+      + Q   L  L  
Sbjct: 428 DTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLT---NEQIQQEQLLQGLHA 484

Query: 594 RDNEFSGNIAHLINEDSNLRALLLR 618
             +          +  +     L +
Sbjct: 485 EIDTNLRRYRLPKDGLARSSDNLNK 509

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 58/377 (15%), Positives = 116/377 (30%), Gaps = 60/377 (15%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I    F     L  L LS NR    + +        +  L   N+ YN  +      L  
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVDLS-------LIPSLFHANVSYNLLST-----LAI 209

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
             ++  L    NS +              L +L L  N +T       + +   LVE+++
Sbjct: 210 PIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTD---TAWLLNYPGLVEVDL 261

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           + NE + ++      +  L  L +S+N+L   L       + +L+ L L  N        
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN-LYGQPIPTLKVLDLSHN-------- 311

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                        L  ++     F      +L+ L L H +I  T+   L   +  + + 
Sbjct: 312 ------------HLLHVERNQPQFD-----RLENLYLDHNSIV-TLK--LSTHHTLKNLT 351

Query: 328 LSDNNLVDTFPTWLLQNNTKLEI----------MFLFNNFLTGNLQLPNSKRNLPHLVIS 377
           LS N+        L +N  +  +            L +         P   R L ++ ++
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411

Query: 378 NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
           +     +  +        +  +    +         +   E+L           + L   
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 438 FLTSCVSLEFMNLSHNY 454
            +     L+ ++   + 
Sbjct: 472 QIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 63/422 (14%), Positives = 118/422 (27%), Gaps = 99/422 (23%)

Query: 399 LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YF 455
           + +   + +         +     +   ++   + LP   L S   +E +NL+       
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEI 90

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKF 514
           D   F        +  L++  N     L   +  N   L VL +  N LS          
Sbjct: 91  DTYAFA---YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS---------- 136

Query: 515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNS 573
                      S    +      L     L +S N L     +     +SL+ L   +N 
Sbjct: 137 -----------SLPRGIFHNTPKLTT---LSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
           L+  +  +L+ S  L   ++  N  S      +     +  L    N++          L
Sbjct: 183 LT-HVDLSLIPS--LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL 234

Query: 634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693
             L    + +N L                                 N             
Sbjct: 235 TIL---KLQHNNLT--------------------------DTAWLLN------------- 252

Query: 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNL 753
                         +  +DLS NEL   +      +  +  L +SNN L  ++      +
Sbjct: 253 -----------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 754 KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPY 813
              + +DLS+N L   +     +   L    + +N++  T+                N +
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHNDW 357

Query: 814 LC 815
            C
Sbjct: 358 DC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 52/324 (16%), Positives = 114/324 (35%), Gaps = 20/324 (6%)

Query: 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKF-----SNLDVLLMSRNSFE 528
              N    + E   ++++  Y     +  +  Q       F     +N  ++    ++  
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 529 GDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQ 587
              +  L +     +L++++ ++        +   +++ L+   N++    P+       
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
           LT L L  N+ S     + +    L  L +  NNL+    +       L  + +S N L 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 648 GPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707
               S   ++              +++            VE    + N     +G V   
Sbjct: 185 HVDLSLIPSLF-----------HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233

Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
           +T L L  N LT D    +     +  ++LS N L   +   F  ++  E + +S N+L 
Sbjct: 234 LTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 768 GQIPPELGELSFLAIFNVSYNNLS 791
             +      +  L + ++S+N+L 
Sbjct: 292 -ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 37/263 (14%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + + +  + +  L  +DLS N  E                     I Y+ F         
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELE--------------------KIMYHPF--------V 275

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            +  L  L++  N        N     +  L+VLDLS N +    + +       L  L 
Sbjct: 276 KMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLY 330

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           ++ N    L          L+ L LS N    N   ++  N+         D H +  + 
Sbjct: 331 LDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDA-DQHCKIDYQ 386

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYI 326
           L         +   L RL         + K Q         +   ++     Y      +
Sbjct: 387 LEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGV 446

Query: 327 DLSDNNLVDTFPTWLLQNNTKLE 349
            L  N  ++     L     +L 
Sbjct: 447 PLQGNEQLEAEVNELRAEVQQLT 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (301), Expect = 2e-28
 Identities = 86/475 (18%), Positives = 167/475 (35%), Gaps = 40/475 (8%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
              T L +  N  SE       +++L  L +L +S NRI   L +      + L  L+++
Sbjct: 21  QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
            N+   +      NL +L   DLS N            N++ L++L L   H +    + 
Sbjct: 78  HNKLVKISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVL 133

Query: 269 VLANHSRLEVF----QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
            +A+ +  +V     +    + + E         L ++   +      +   ++   +  
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 325 YIDLSDN----------NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHL 374
             ++             +++    T    +N  L  +    N     LQL      + + 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYF 252

Query: 375 VISNNSFIGKLPENF----GLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNF 430
            ISN    G+L        G  L  L    +  + F             +   + + +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG- 311

Query: 431 SRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFT--GRLEVGLL 488
           +R +     +       ++ S+N     +F    +L +L  L L  NQ     ++     
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFS---NLDVLLMSRNSFEGDVSVQL-SNLEVARIL 544
              SL  LD+S N +S    +  G  S   +L  L MS N     +   L   ++V   L
Sbjct: 372 QMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV---L 426

Query: 545 DISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEF 598
           D+  NK+    +      +L+ L   +N L  ++P+ +    + L  + L  N +
Sbjct: 427 DLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (274), Expect = 4e-25
 Identities = 82/454 (18%), Positives = 165/454 (36%), Gaps = 33/454 (7%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
            +   +L +L +S NR +  +     +  +  ++L+ L++ +N   +  +       +L 
Sbjct: 41  ILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKLVK--IS-CHPTVNLK 93

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL-VELNINENE 211
            L L  N+F       K   N+  L+ L LS   +     +  I  L    V L + E  
Sbjct: 94  HLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETY 151

Query: 212 FDGLLPQCLSNLTYLRV-LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
            +   P+ L +     + +   +NK    +    +  + +LE  ++            + 
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 271 ANHSRLEVFQLSRLQVETENFPWLPKFQLKVL----NLRHCNISGTIPRFLQYQYDFRYI 326
                    +LS L +      W    ++  L     + + +IS    +      DF Y 
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 327 DLS---------DNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN-LQLPNSKRNLPHLVI 376
             S          +++     +++ +  + + I     +      +  P+      HL  
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 377 SNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY---MERLLFLDLSSNNFSRD 433
           SNN     + EN G  L EL  L +  N  +  +         M+ L  LD+S N+ S D
Sbjct: 332 SNNLLTDTVFENCG-HLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 434 LPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL 493
             K   +   SL  +N+S N     IF       ++  L L+ N+    +   ++   +L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

Query: 494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSF 527
             L+V++N L         + ++L  + +  N +
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 95/597 (15%), Positives = 190/597 (31%), Gaps = 133/597 (22%)

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
           ++D S N +    + + +   +    LNI++N    L    + +L+ LR+L +S N++  
Sbjct: 4   LVDRSKNGLIH--VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN--HSRLEVFQLSRLQVETENFPWLPK 296
            L +SV      LEYL L  N            N  H  L       L    + F  +  
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFDALP-ICKEFGNMS- 115

Query: 297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
            QLK L L   ++  +    + +    + + +      +      LQ+     +      
Sbjct: 116 -QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL------ 168

Query: 357 FLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGY 416
                           H+V   N     + +     +  L   ++               
Sbjct: 169 ----------------HIVFPTNKEFHFILDVSVKTVANLELSNIKCV------------ 200

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
               L  +  S   S            +L   N+   +       + +    + +  +++
Sbjct: 201 ----LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 477 NQFTGRLEVGLLNAS-----SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDV 531
            +  G+L+    + S     +L +  V +++           FSN+++            
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK----------- 305

Query: 532 SVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL 591
                         +S  ++   +   S  S   +L   NN L+ T+       ++L TL
Sbjct: 306 -----------NFTVSGTRMV-HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 592 DLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDISYNTLNG 648
            L+ N+      IA +  +  +L+ L +  N++  +  +  C   + L  +++S N L  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
            I  C                                                      +
Sbjct: 414 TIFRCL--------------------------------------------------PPRI 423

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYN 764
             LDL SN++   IP ++  L  +  LN+++N L  S+P   F  L   + + L  N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 80/434 (18%), Positives = 147/434 (33%), Gaps = 77/434 (17%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNE-SLVPLLT 146
           +++S+F   QEL  LDLS N+           +      LK L++ +N+F+   +     
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVK-------ISCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 147 SLTSLTSLFLQGNSFSEG--------------------FKHNKGLVNLRNLEVLDLSGNR 186
           +++ L  L L      +                     +   +    L++     L    
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 187 ITG----SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLT------YLRVLDLSSNKL 236
            T      ++   +  + NL   NI     D      LS L        L  L L++ + 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 237 SGNLPLSVIANL--TSLEYLSLFDNHFQESFPLSVLA-NHSRLEVFQLSRLQVETENFPW 293
           + N  + ++  +  T++ Y S+ +   Q          + + L+   + ++  +   FP 
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 294 LPKF----QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLE 349
              +     + + N                   F ++D S+N L DT       + T+LE
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELE 351

Query: 350 IMFLFNNFLTGNLQLPNSKR------NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403
            + L  N L    +L           +L  L IS NS      +        L+ L+MS 
Sbjct: 352 TLILQMNQLK---ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 404 NSFEG---------------------SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
           N                         SIP  +  +E L  L+++SN   + +P       
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRL 467

Query: 443 VSLEFMNLSHNYFD 456
            SL+ + L  N +D
Sbjct: 468 TSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 4e-16
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESL 141
           +D F      ++  F  +++ + + +                +     L+   N   +++
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTV 340

Query: 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LK 200
                 LT L +L LQ N   E  K  +    +++L+ LD+S N ++     +G C   K
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE-KKGDCSWTK 399

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +L+ LN++ N     + +CL     ++VLDL SNK+  ++P  V+  L +L+ L++  N 
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQ 455

Query: 261 FQESFPLSVLANHSRLEVFQLS 282
            + S P  +    + L+   L 
Sbjct: 456 LK-SVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 72/430 (16%), Positives = 146/430 (33%), Gaps = 31/430 (7%)

Query: 373 HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR 432
            L IS N  I +L  +  L L +L  L +S N  +        + + L +LDLS N   +
Sbjct: 25  ILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 433 DLPKHFLTSCVSLEFMNLSHNYFD----GQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL 488
            +  H   +   L+ ++LS N FD     + F    N+++L FL L+         + + 
Sbjct: 84  -ISCHPTVN---LKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548
           + +   VL V                 + +   +            + ++ V  + ++  
Sbjct: 137 HLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG---NIAHL 605
           + +   LE +     L       + L+    N  L +  L  ++   N F      + H 
Sbjct: 195 SNIKCVLEDNKCSYFL-------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 606 INEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGN 665
                ++  + L+G     +       L+ L+I  +  +    P    +   S    K  
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 666 YYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE 725
             + T  + +           ++                L  +  L L  N+L  ++   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366

Query: 726 IGY---LGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYNKLNGQIPPELGELSFLA 781
                 +  +  L++S N +S    +   S  K   S+++S N L   I   L     + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 782 IFNVSYNNLS 791
           + ++  N + 
Sbjct: 425 VLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 60/390 (15%), Positives = 132/390 (33%), Gaps = 41/390 (10%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
           L++S N  S         S   L  + +SHN         +    +L +L L+ N+    
Sbjct: 26  LNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-- 82

Query: 483 LEVGLLNASSLYVLDVSNNML-SGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVA 541
            ++      +L  LD+S N   +  + +  G  S L  L +S    E    + +++L ++
Sbjct: 83  -KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 542 RILDISENKLYGPLEFSS----NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
           ++L +         +       N  SL  +FP N      +  ++   + L   +++   
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 598 FSGNIAHLINEDSNL------RALLLRGNNLQGNIPEPLCHLRK---LAIVDISYNTLNG 648
                ++ ++  + L        L L       N    +  L     +    IS   L G
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
            +     + S          S  +L++    +          +           ++   M
Sbjct: 262 QLDFRDFDYS--------GTSLKALSIHQVVSDVFGFPQSYIY-----------EIFSNM 302

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
              + + +            +     L+ SNN L+ ++  +  +L   E++ L  N+L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK- 361

Query: 769 QIPPELG---ELSFLAIFNVSYNNLSGTVP 795
           ++        ++  L   ++S N++S    
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
           T L++S N ++    S+I  L ++  L +S+N +       F   +  E +DLS+NKL  
Sbjct: 24  TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 769 QIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN 802
                   L  L   ++S+N     +P   +F N
Sbjct: 84  ISCHPTVNLKHL---DLSFNAFD-ALPICKEFGN 113

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 4e-27
 Identities = 59/366 (16%), Positives = 112/366 (30%), Gaps = 59/366 (16%)

Query: 122 RSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLD 181
                 + L    ++   +L P    L+     +    +            N  N ++  
Sbjct: 9   HHSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWR---QANSNNPQIET 62

Query: 182 LSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLP 241
            +G  +  +  +         V L +         P     L++L+ + + +  L   LP
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 242 LSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKV 301
            + +     LE L+L  N    + P S            ++ L             +L+ 
Sbjct: 121 DT-MQQFAGLETLTLARNPL-RALPAS------------IASLN------------RLRE 154

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
           L++R C     +P  L              +   +     L N   L+ + L    +   
Sbjct: 155 LSIRACPELTELPEPL-------------ASTDASGEHQGLVN---LQSLRLEWTGIR-- 196

Query: 362 LQLPNSKRNLPHLV---ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYME 418
             LP S  NL +L    I N+  +  L       LP+L  LD+   +   + PP  G   
Sbjct: 197 -SLPASIANLQNLKSLKIRNSP-LSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ 478
            L  L L   +    LP   +     LE ++L       ++      L     + +  + 
Sbjct: 254 PLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 479 FTGRLE 484
                +
Sbjct: 313 QAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 45/340 (13%), Positives = 91/340 (26%), Gaps = 56/340 (16%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
             +    +  +  +   L    ++ +  +  +     +     +  N      +  + + 
Sbjct: 15  ENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA-LK 69

Query: 384 KLPENFG-LILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
              +       P  V L++         P     +  L  + + +      LP   +   
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT-MQQF 126

Query: 443 VSLEFMNLSHNYFDGQIFPKYM-NLAKLVFLFLND-NQFT--------GRLEVGLLNASS 492
             LE + L+ N    +  P  + +L +L  L +    + T                   +
Sbjct: 127 AGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 493 LYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY 552
           L  L +    +   LP  I    NL                        + L I  + L 
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNL------------------------KSLKIRNSPLS 219

Query: 553 G-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN----EFSGNIAHLIN 607
                   +   L  L     +     P      + L  L L+D         +I  L  
Sbjct: 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-- 276

Query: 608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
             + L  L LRG      +P  +  L    I+ +  +   
Sbjct: 277 --TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 6e-19
 Identities = 46/323 (14%), Positives = 94/323 (29%), Gaps = 32/323 (9%)

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
            + L  +           L     ++    +D N   +   W   N+   +I       L
Sbjct: 14  RENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSA--WRQANSNNPQIETRTGRAL 68

Query: 359 TGNLQLPNS-----KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS 413
                  +      +     L + +   + + P+     L  L ++ +        +P +
Sbjct: 69  K---ATADLLEDATQPGRVALELRSVP-LPQFPDQAFR-LSHLQHMTIDAAGLM-ELPDT 122

Query: 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---------YFDGQIFPKYM 464
           M     L  L L+ N     LP   + S   L  +++                    ++ 
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
            L  L  L L        L   + N  +L  L + N+ LS  L   I     L+ L +  
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 525 NSFEGDVSVQLSNLEVARILDISE-NKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNAL 582
            +   +           + L + + + L   PL+     + L  L          +P+ +
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLI 297

Query: 583 LQSSQLTTLDLRDNEFSGNIAHL 605
            Q      + +  +  +    H 
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 42/320 (13%), Positives = 94/320 (29%), Gaps = 46/320 (14%)

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548
           ++S    L    +         + ++        +R       + + +N    +I   + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 549 NKLYGPLEF--SSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS---GNIA 603
             L    +    +       L   +  L    P+   + S L  + +           + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663
                 + L  L L  N L+  +P  +  L +L  + I        +P    +     E 
Sbjct: 125 QF----AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 664 GNYYN-STLSL------ALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN 716
               N  +L L      +LPA                           L+ +  L + ++
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIAN-----------------------LQNLKSLKIRNS 216

Query: 717 ELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE 776
            L+  +   I +L ++  L+L       + P  F      + + L        +P ++  
Sbjct: 217 PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 777 LSFLAIFNVSYNNLSGTVPN 796
           L+ L   ++        +P+
Sbjct: 276 LTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 51/388 (13%), Positives = 102/388 (26%), Gaps = 79/388 (20%)

Query: 408 GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLA 467
           GS      +      L    +   R      L+        + +  +   +      N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV-LSQWQRHYNADRNRWHSAWRQ----ANSN 56

Query: 468 KLVFLFLNDNQFTGRLE-VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526
                           + +          L++ +  L  Q P    + S+L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 527 FEG--DVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALL 583
                D   Q + LE    L ++ N L   P   + + + LR L          +P  L 
Sbjct: 116 LMELPDTMQQFAGLET---LTLARNPLRALPASIA-SLNRLRELSIRACPELTELPEPLA 171

Query: 584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643
            +                         NL++L L    ++ ++P  + +L+ L  + I  
Sbjct: 172 STDASGE---------------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGD 703
           + L+  +     +                                               
Sbjct: 216 SPLSA-LGPAIHH----------------------------------------------- 227

Query: 704 VLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSY 763
            L  +  LDL       + P   G    +  L L +     ++P     L   E +DL  
Sbjct: 228 -LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 764 NKLNGQIPPELGELSFLAIFNVSYNNLS 791
                ++P  + +L    I  V  +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 46/284 (16%), Positives = 81/284 (28%), Gaps = 58/284 (20%)

Query: 99  LHVLDLSDNRFEG-WEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQ 157
              L+L         ++         L  L+ + I        L   +     L +L L 
Sbjct: 83  RVALELRSVPLPQFPDQA------FRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLA 135

Query: 158 GNSFSE-----GFKHNKGLVNLRNLEVLDLSGNR--------ITGSLIMQGICDLKNLVE 204
            N                  +L  L  L +            +  +        L NL  
Sbjct: 136 RNPLRALPASIA--------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
           L +        LP  ++NL  L+ L + ++ LS  L  + I +L  LE L L       +
Sbjct: 188 LRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPA-IHHLPKLEELDLRGCTALRN 244

Query: 265 FPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
           +P               +                LK L L+ C+   T+P  +       
Sbjct: 245 YP---------PIFGGRA---------------PLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-LPNS 367
            +DL     +   P+  +       I+ +  +      Q  P +
Sbjct: 281 KLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 4e-15
 Identities = 41/188 (21%), Positives = 60/188 (31%), Gaps = 30/188 (15%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTS-----RSLKQLKILNIGYNSFNESL--------- 141
           F  L  L L+ N             +      SL +L+ L+I        L         
Sbjct: 126 FAGLETLTLARNPL----------RALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKN 201
                 L +L SL L+             + NL+NL+ L +  + ++   +   I  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPK 230

Query: 202 LVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
           L EL++         P        L+ L L        LPL  I  LT LE L L     
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVN 289

Query: 262 QESFPLSV 269
               P  +
Sbjct: 290 LSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG 158
           L  L L          + A     +L+ LK L I  +    +L P +  L  L  L L+G
Sbjct: 185 LQSLRLEWTGIRSLPASIA-----NLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRG 238

Query: 159 NSFSEGFKHNKGLVNLRNLEVLDLSG-NRITGSLIMQGICDLKNLVELNINENEFDGLLP 217
            +    +           L+ L L   + +    +   I  L  L +L++        LP
Sbjct: 239 CTALRNYP--PIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 218 QCLSNLTYLRVLDLSSN---KLSGNLPLSVIA 246
             ++ L    ++ +  +   +L  + P++  A
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 30/193 (15%)

Query: 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663
           H  +  S    L  +G+       + L   ++    D +             N +    +
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIE 61

Query: 664 GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP 723
                + L  A        +                           L+L S  L    P
Sbjct: 62  TRTGRA-LK-ATADLLEDATQPGRVA---------------------LELRSVPLP-QFP 97

Query: 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF 783
            +   L  +  + +    L   +P +       E++ L+ N L   +P  +  L+ L   
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155

Query: 784 NVSYNNLSGTVPN 796
           ++        +P 
Sbjct: 156 SIRACPELTELPE 168

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (284), Expect = 2e-26
 Identities = 102/470 (21%), Positives = 171/470 (36%), Gaps = 32/470 (6%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
               +L L  NS SE       +  L  L VL LS NRI    +   +    ++L  L++
Sbjct: 52  PRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDV 107

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           + N    +    +++L +L   DLS N            NLT L +L L    F++   L
Sbjct: 108 SHNRLQNISCCPMASLRHL---DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
            V   H    +  L    ++      L      VL+L     S    +         ++ 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK----------RNLPHLVIS 377
           LS+  L D     L+   ++L       N    +++               R + +L I 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 378 NNSFIGKLPENFG----LILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRD 433
           N +   ++           L  L+   +    F  S          +    LS ++ +  
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPF 343

Query: 434 LPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVG--LLNAS 491
           +      S  S  F+N + N F   +F     L +L  L L  N      +V     N S
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 492 SLYVLDVSNNML-SGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL-SNLEVARILDISEN 549
           SL  LDVS N L S    R      ++ VL +S N   G V   L   ++V   LD+  N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNN 460

Query: 550 KLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEF 598
           ++    +  ++  +L+ L   +N L  ++P+ +    + L  + L DN +
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 80/450 (17%), Positives = 152/450 (33%), Gaps = 58/450 (12%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           ++  +F+  Q+L  LD+S NR +         +   +  L+ L++ +N            
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQN-------ISCCPMASLRHLDLSFND--------FDV 135

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLK-NLVELN 206
           L            F           NL  L  L LS  +    L +  +  L  + + L+
Sbjct: 136 LP-------VCKEFG----------NLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLD 177

Query: 207 INENEFDGLLPQCLSNL-TYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           +      G   + L    T +  L    N L        +  L  L+  ++  N      
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 266 PLSVLAN---HSRLEVFQLSRLQVETENFPWLPKFQ----LKVLNLRHCNISG----TIP 314
            ++ L+       L    L  ++   +    L +F     ++ LN+ +  I+        
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 315 RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQL-PNSKRNLPH 373
            + +       I+   N +       L     ++ I  L  +       + P S  +   
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP---SMGYMERLLFLDLSSNNF 430
           L  + N F   + +     L  L  L + +N  + +          M  L  LD+S N+ 
Sbjct: 358 LNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSL 415

Query: 431 SRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA 490
           +            S+  +NLS N   G +F       K+  L L++N+    +   + + 
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHL 472

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVL 520
            +L  L+V++N L   +P   G F  L  L
Sbjct: 473 QALQELNVASNQLKS-VPD--GVFDRLTSL 499

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 89/564 (15%), Positives = 172/564 (30%), Gaps = 117/564 (20%)

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
           L++++N    L    +S L+ LRVL LS N++  +L   V      LEYL +  N  Q +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 265 FPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
                +A+                               LRH                  
Sbjct: 115 ISCCPMAS-------------------------------LRH------------------ 125

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGK 384
            +DLS N+           N TKL  + L               R L  L +++      
Sbjct: 126 -LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF----------RQLDLLPVAHLHLSCI 174

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVS 444
           L +     +       +   +              +L L    N+         + +   
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTT------------VLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           L+  N+  N  + Q    +++        LN            +    +      +  L 
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLN------------VTLQHIETTWKCSVKLF 270

Query: 505 GQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF-SSNHSS 563
                   ++ N+  L ++      + +   + L+   I  +         E   S  + 
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ 623
           +       +             S  T L+   N F+ ++    +    L+ L+L+ N L+
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 624 --GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681
               +     ++  L  +D+S N+LN          +  +   N  ++ L+         
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT--------- 441

Query: 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNF 741
                            S    +   +  LDL +N +   IP ++ +L  +  LN+++N 
Sbjct: 442 ----------------GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 742 LSGSIPR-SFSNLKMTESMDLSYN 764
           L  S+P   F  L   + + L  N
Sbjct: 485 LK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 9/201 (4%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESL 141
           N  F     +L+  F E+++  LS +               S      LN   N F +S+
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSV 369

Query: 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKN 201
               ++L  L +L LQ N     FK      N+ +LE LD+S N +      +     ++
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429

Query: 202 LVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
           ++ LN++ N   G + +CL     ++VLDL +N++  ++P  V  +L +L+ L++  N  
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQL 485

Query: 262 QESFPLSVLANHSRLEVFQLS 282
           + S P  V    + L+   L 
Sbjct: 486 K-SVPDGVFDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 74/418 (17%), Positives = 145/418 (34%), Gaps = 30/418 (7%)

Query: 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNN 429
            L  L +S+N  I  L  +  L   +L YLD+S N  + +I      M  L  LDLS N+
Sbjct: 77  ELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFND 132

Query: 430 FSRDLPKH-FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL 488
           F   LP      +   L F+ LS   F         +L     L    +      E   L
Sbjct: 133 FD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548
              +  VL +  +  S    +     + L  L +S      +   +L           + 
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 549 NKL-YGPLEFSSN----------HSSLRYLFPHNNSLSGTIPNALLQSSQLTT-----LD 592
             +    +E +               + YL  +N +++  I       S+          
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 593 LRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS 652
           +++  F  +   L +  + +   +L  ++                 ++ + N     +  
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 653 CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY----M 708
             + +          N   +    A    ++   +E   ++ N   S+  D        +
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVA-LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
             L+LSSN LTG +   +    ++  L+L NN +  SIP+  ++L+  + ++++ N+L
Sbjct: 431 LVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 79/433 (18%), Positives = 153/433 (35%), Gaps = 41/433 (9%)

Query: 374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSR 432
           L +S NS I +L       L EL  L +S N    S+   +  + + L +LD+S N    
Sbjct: 57  LSLSQNS-ISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ- 113

Query: 433 DLPKHFLTSCVSLEFMNLSHNYFD----GQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL 488
           ++    + S   L  ++LS N FD     + F    NL KL FL L+  +F    ++ LL
Sbjct: 114 NISCCPMAS---LRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFR---QLDLL 164

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548
             + L++  +  +++S  +    G+  +L +   +         V   N   +  +++S 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKG--GETESLQIPNTTVLHL-----VFHPNSLFSVQVNMSV 217

Query: 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN- 607
           N L G L+ S+   +          LS       L +  L  ++                
Sbjct: 218 NAL-GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 608 --EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGN 665
             E  N+  L +     +         L+ L I  +          + ++  +    K  
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 666 YYNSTLSLALPAEDNRESSQRVEVKFMAKNRY---ESYKGDVLKYMTGLDLSSNELTGDI 722
             + T  + +    +  S   +      +N +          LK +  L L  N L  + 
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLN---FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 723 PSEIGYLGEIHALNLSNNFL----SGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778
                    + +L   +  L    S +  R+ +  +    ++LS N L G +   L    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK- 451

Query: 779 FLAIFNVSYNNLS 791
            + + ++  N + 
Sbjct: 452 -VKVLDLHNNRIM 463

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (263), Expect = 6e-25
 Identities = 53/234 (22%), Positives = 86/234 (36%), Gaps = 9/234 (3%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
              L +  N        +   LT LT L L  N  S     ++      +L+ LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCL-SNLTYLRVLDLSSNKLSGNLPLSVI 245
           +    +      L+ L  L+   +    +    +  +L  L  LD+S           + 
Sbjct: 90  VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF 146

Query: 246 ANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR---LQVETENFPWLPKFQLKVL 302
             L+SLE L +  N FQE+F   +      L    LS+    Q+    F  L    L+VL
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--LQVL 204

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
           N+ H N         +     + +D S N+++ +    L    + L  + L  N
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 16/241 (6%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
           +S T L L+ N        +     L  L  L LS N ++             +L  L++
Sbjct: 28  SSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           + N     +      L  L  LD   + L      SV  +L +L YL +   H +     
Sbjct: 86  SFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 268 SVLANHSRLEVFQLSRLQ----VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF 323
            +    S LEV +++          + F  L    L  L+L  C +    P         
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--NLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ---LPNSKRNLPHLVISNNS 380
           + +++S NN   +  T+  +    L+++    N +    +   L +   +L  L ++ N 
Sbjct: 202 QVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQND 259

Query: 381 F 381
           F
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +   +F    +L  L LS N            +      LK L++ +N    ++      
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-ITMSSNFLG 99

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELN 206
           L  L  L  Q ++  +        ++LRNL  LD+S       +   GI + L +L  L 
Sbjct: 100 LEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLK 156

Query: 207 INENEF-DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
           +  N F +  LP   + L  L  LDLS  +L   L  +   +L+SL+ L++  N+F  S 
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SL 214

Query: 266 PLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLNLRH 306
                   + L+V   S       + +     P   L  LNL  
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 59/285 (20%), Positives = 93/285 (32%), Gaps = 35/285 (12%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
           +   +  +   +T   +  GI    +   L +  N+   L       LT L  L LSSN 
Sbjct: 8   SGTEIRCNSKGLTS--VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 236 LS-GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS--RLQVETENFP 292
           LS            TSL+YL L  N    +   S      +LE        L+  +E   
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 293 WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF 352
           +L    L  L++ H +                 + ++ N+  + F   +      L  + 
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 353 LFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
           L    L                 +S  +F           L  L  L+MS N+F  S+  
Sbjct: 182 LSQCQLE---------------QLSPTAFNS---------LSSLQVLNMSHNNFF-SLDT 216

Query: 413 SM-GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD 456
                +  L  LD S N+      +       SL F+NL+ N F 
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 14/241 (5%)

Query: 392 ILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFS-RDLPKHFLTSCVSLEFMN 449
           I      L++  N  + S+P  +   + +L  L LSSN  S +           SL++++
Sbjct: 26  IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 450 LSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLP 508
           LS N     +   ++ L +L  L    +      E  +  +  +L  LD+S+        
Sbjct: 85  LSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 509 RWIGKFSNLDVLLMSRN----SFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSS 563
                 S+L+VL M+ N    +F  D+  +L NL     LD+S+ +L        ++ SS
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF---LDLSQCQLEQLSPTAFNSLSS 200

Query: 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG-NIAHLINEDSNLRALLLRGNNL 622
           L+ L   +N+            + L  LD   N         L +  S+L  L L  N+ 
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 623 Q 623
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 32/177 (18%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           +   S+F+  + L  LD+S                      ++   G          +  
Sbjct: 116 MSEFSVFLSLRNLIYLDISHT------------------HTRVAFNG----------IFN 147

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L+SL  L + GNSF E F  +     LRNL  LDLS  ++   L       L +L  LN
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANL-TSLEYLSLFDNHFQ 262
           ++ N F  L       L  L+VLD S N +        + +  +SL +L+L  N F 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 50/239 (20%), Positives = 74/239 (30%), Gaps = 29/239 (12%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM--NLAKLVFLFLNDNQFT 480
           L+L SN     LP         L  ++LS N    +            L +L L+ N   
Sbjct: 33  LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 481 GRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV 540
             +    L    L  LD  ++ L                 +   + F       L NL  
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQ---------------MSEFSVFLS-----LRNL-- 128

Query: 541 ARILDISENKL-YGPLEFSSNHSSLRYLF-PHNNSLSGTIPNALLQSSQLTTLDLRDNEF 598
              LDIS            +  SSL  L    N+     +P+   +   LT LDL   + 
Sbjct: 129 -IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 599 SGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657
                   N  S+L+ L +  NN       P   L  L ++D S N +         + 
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 49/291 (16%), Positives = 86/291 (29%), Gaps = 69/291 (23%)

Query: 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY----GPLEFSSNHSSLRYLFP 569
            S+   L +  N  +         L     L +S N L              +SL+YL  
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDL 85

Query: 570 HNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED-----SNLRALLLRGNNLQG 624
             N +  T+ +  L   QL  LD + +    N+  +          NL  L +   + + 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 625 NIPEPLCHLRKLAIVDISYNTLNGPIPS-CFTNISLWMEKGNYYNSTLSLALPAEDNRES 683
                   L  L ++ ++ N+         FT                            
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------------------- 173

Query: 684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFL 742
                                L+ +T LDLS  +L   +       L  +  LN+S+N  
Sbjct: 174 ---------------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211

Query: 743 SGSIPRSFSNLKMTESMDLSYNKLNGQIPPEL--GELSFLAIFNVSYNNLS 791
                  +  L   + +D S N +      +      S LA  N++ N+ +
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 45/267 (16%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS-GNIAHLINED-SNLRALLLRG 619
           SS   L   +N L         + +QLT L L  N  S        +   ++L+ L L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 620 NNLQGNIPEPLCHLRKLAIVDISYNTLNG-PIPSCFTN----ISLWMEKGNYYNSTLSLA 674
           N +   +      L +L  +D  ++ L      S F +    I L +     +  T    
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI----SHTHTRVAF 142

Query: 675 LPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIH 733
               +                         L  +  L ++ N    +   +I   L  + 
Sbjct: 143 NGIFNG------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 734 ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSG 792
            L+LS   L    P +F++L   + +++S+N     +       L+ L + + S N++  
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 793 TVPNKGQFANFDES----NYRGNPYLC 815
           T   K +  +F  S    N   N + C
Sbjct: 237 TSK-KQELQHFPSSLAFLNLTQNDFAC 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 38/308 (12%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
             +L++  N   E       +L +L +L L  N  S+          L  LE L LS N+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQ 111

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL-SGNLPLSVI 245
           +    + + +   K L EL ++ENE   +     + L  + V++L +N L S  +     
Sbjct: 112 LK--ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 246 ANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVL 302
             +  L Y+ + D +   + P  +  +   L    L   +   V+  +   L    L  L
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNN--LAKL 221

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNL 362
            L   +IS      L      R + L++N L        L ++  +++++L NN ++   
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNIS--- 276

Query: 363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE-GSIPPSM-GYMERL 420
                        I +N F    P  +         + +  N  +   I PS    +   
Sbjct: 277 ------------AIGSNDF---CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 421 LFLDLSSN 428
             + L + 
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 62/318 (19%), Positives = 108/318 (33%), Gaps = 55/318 (17%)

Query: 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
            +  +LDL  N+IT  +      +LKNL  L +  N+   + P   + L  L  L LS N
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ-----VETE 289
           +L   LP  +     +L+ L + +N        SV    +++ V +L         +E  
Sbjct: 111 QLK-ELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 290 NFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF---RYIDLSDNNLVDTFPTWLLQNNT 346
            F  + K  L  + +   NI+ TIP+ L           + L  N +        L+   
Sbjct: 166 AFQGMKK--LSYIRIADTNIT-TIPQGL-----PPSLTELHLDGNKI-TKVDAASLKGLN 216

Query: 347 KLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSF 406
            L  + L  N ++                + N S             P L  L ++ N  
Sbjct: 217 NLAKLGLSFNSISA---------------VDNGSLAN---------TPHLRELHLNNNKL 252

Query: 407 EGSIPPSMGYMERLLFLDLSSNNFSR-----DLPKHFLTSCVSLEFMNLSHNYFDGQIFP 461
              +P  +   + +  + L +NN S        P  + T   S   ++L  N        
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 462 KYM--NLAKLVFLFLNDN 477
                 +     + L + 
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 53/279 (18%), Positives = 90/279 (32%), Gaps = 26/279 (9%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I    F   + LH L L +N+               L +L+ L +  N   E  +P    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISP----GAFAPLVKLERLYLSKNQLKE--LPEKM- 119

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI-CDLKNLVELN 206
             +L  L +  N  ++  K       L  + V++L  N +  S I  G    +K L  + 
Sbjct: 120 PKTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           I +     +      +LT    L L  NK++  +  + +  L +L  L L  N    +  
Sbjct: 178 IADTNITTIPQGLPPSLTE---LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVD 232

Query: 267 LSVLANHSRLEVFQLS--RLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF- 323
              LAN   L    L+  +L              ++V+ L + NIS              
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHK--YIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 324 -----RYIDLSDNNLVDTF-PTWLLQNNTKLEIMFLFNN 356
                  + L  N +          +       + L N 
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 66/336 (19%), Positives = 113/336 (33%), Gaps = 51/336 (15%)

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV---ISN 378
             R +  SD  L +  P  L  +   L    L NN +T  ++     +NL +L    + N
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLPPDTALL---DLQNNKIT-EIK-DGDFKNLKNLHTLILIN 85

Query: 379 NSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHF 438
           N  I K+       L +L  L +S+N  +  +P  M   + L  L +  N  ++ + K  
Sbjct: 86  NK-ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK-VRKSV 140

Query: 439 LTSCVSLEFMNLSHNYFDGQIFPKYM--NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL 496
                 +  + L  N              + KL ++ + D   T  +  GL    SL  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197

Query: 497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLE 556
            +  N ++      +   +NL  L +S N                 I  +    L     
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFN----------------SISAVDNGSL----- 236

Query: 557 FSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG------NIAHLINEDS 610
             +N   LR L  +NN L   +P  L     +  + L +N  S              + +
Sbjct: 237 --ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 611 NLRALLLRGNNLQGNI--PEPLCHLRKLAIVDISYN 644
           +   + L  N +Q     P     +   A V +   
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 61/357 (17%), Positives = 114/357 (31%), Gaps = 97/357 (27%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQF 479
           LDL +N  +  +      +  +L  + L +N         F     L KL  L+L+ NQ 
Sbjct: 57  LDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYLSKNQL 112

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLE 539
              L   +    +L  L V  N ++                 + ++ F G     L+ + 
Sbjct: 113 K-ELPEKMP--KTLQELRVHENEIT----------------KVRKSVFNG-----LNQMI 148

Query: 540 VARILDISENKLY-GPLEFS--SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN 596
           V   +++  N L    +E         L Y+   + +++ TIP  L  S  LT L L  N
Sbjct: 149 V---VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGN 202

Query: 597 EFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656
           + +   A  +   +NL  L L  N++       L +   L  + ++ N L   +P    +
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD 261

Query: 657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN 716
                                                            KY+  + L +N
Sbjct: 262 ------------------------------------------------HKYIQVVYLHNN 273

Query: 717 ELTG------DIPSEIGYLGEIHALNLSNNFLSGSI--PRSFSNLKMTESMDLSYNK 765
            ++         P           ++L +N +      P +F  + +  ++ L   K
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
              L  L L  N+    +      + + L  L  L + +NS +      L +   L  L 
Sbjct: 191 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT----GSLIMQGICD-LKNLVELNINEN 210
           L  N   +      GL + + ++V+ L  N I+          G      +   +++  N
Sbjct: 247 LNNNKLVK---VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 211 --EFDGLLPQCLSNLTYLRVLDLSSNK 235
             ++  + P     +     + L + K
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 15/235 (6%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
                L   NN ++            L TL L +N+ S            L  L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN----ISLWMEKGNYYNSTLSLALPA 677
           L+  +PE +   + L  + +  N +     S F      I + +      +S +      
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE----- 163

Query: 678 EDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALN 736
               +  +++    +A     +    +   +T L L  N++T  + +     L  +  L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           LS N +S     S +N      + L+ NKL  ++P  L +  ++ +  +  NN+S
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 5e-22
 Identities = 70/316 (22%), Positives = 108/316 (34%), Gaps = 46/316 (14%)

Query: 345 NTKLEIMFLFNNFLTGNLQLPNS-KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403
           N    ++ +  + LT    LP+    ++  LVI +N+ +  LP        EL  L++S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNN-LTSLPALPP----ELRTLEVSG 90

Query: 404 NSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY 463
           N    S+P     +  L        +               L  + +  N       P  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV- 138

Query: 464 MNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523
                L  L ++DNQ    L       S L  L   NN L+  LP        L  L +S
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPS---GLQELSVS 189

Query: 524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALL 583
            N     +    S L     L    N+L       +  S L+ L    N L+ ++P    
Sbjct: 190 DNQLA-SLPTLPSEL---YKLWAYNNRLT---SLPALPSGLKELIVSGNRLT-SLPVLP- 240

Query: 584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643
             S+L  L +  N     +  L    S L +L +  N L   +PE L HL     V++  
Sbjct: 241 --SELKELMVSGN----RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 644 NTLNGPIPSCFTNISL 659
           N L+         I+ 
Sbjct: 294 NPLSERTLQALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 65/382 (17%), Positives = 116/382 (30%), Gaps = 77/382 (20%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
              +  L + DN                  +L+ L +  N    SL  L   L  L+   
Sbjct: 60  PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQL-TSLPVLPPGLLELSIFS 110

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
                                L  L + GN++T SL +        L EL++++N+    
Sbjct: 111 NPLTHLPA---------LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS- 155

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           LP   S L     L   +N+L+ +LP       + L+ LS+ DN    S P         
Sbjct: 156 LPALPSELCK---LWAYNNQLT-SLP----MLPSGLQELSVSDNQLA-SLPTL------- 199

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
                 S L             +L   N R  ++              + + +S N L  
Sbjct: 200 -----PSELY------------KLWAYNNRLTSLPALPSG-------LKELIVSGNRLT- 234

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
           + P       ++L+ + +  N LT    LP     L  L +  N  + +LPE+    L  
Sbjct: 235 SLPVLP----SELKELMVSGNRLT---SLPMLPSGLLSLSVYRNQ-LTRLPESLIH-LSS 285

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
              +++  N        ++  +  +      S    R           +      + ++ 
Sbjct: 286 ETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 456 DGQIFPKYMNLAKLVFLFLNDN 477
                 +     +       DN
Sbjct: 343 VPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 7e-21
 Identities = 73/357 (20%), Positives = 117/357 (32%), Gaps = 51/357 (14%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
             +++ ++ L  T P  L  + T L    + +N LT    LP     L  L +S N  + 
Sbjct: 43  AVLNVGESGL-TTLPDCLPAHITTL---VIPDNNLT---SLPALPPELRTLEVSGNQ-LT 94

Query: 384 KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV 443
            LP      L EL                       L  L +  N  +  LP        
Sbjct: 95  SLPVLPPG-LLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPP---- 141

Query: 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML 503
            L+ +++S N       P     ++L  L+  +NQ T  L +     S L  L VS+N L
Sbjct: 142 GLQELSVSDNQL--ASLPA--LPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQL 193

Query: 504 SGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSS 563
           +  LP    +   L       N     +    S L+    L +S N+L          S 
Sbjct: 194 A-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKE---LIVSGNRL---TSLPVLPSE 242

Query: 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG---NIAHLINEDSNLRALLLRGN 620
           L+ L    N L+ ++P      S L +L +  N+ +    ++ HL    S+   + L GN
Sbjct: 243 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHL----SSETTVNLEGN 294

Query: 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPA 677
            L     + L  +             +    S              +        PA
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 84/455 (18%), Positives = 145/455 (31%), Gaps = 62/455 (13%)

Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
             ++  L +  N +T SL          L  L ++ N+   L P     L  L +     
Sbjct: 60  PAHITTLVIPDNNLT-SLP----ALPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL 113

Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293
             L         A  + L  L +F N    S P         +    L  L V       
Sbjct: 114 THLP--------ALPSGLCKLWIFGNQL-TSLP---------VLPPGLQELSVSDNQLAS 155

Query: 294 LPK--FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIM 351
           LP    +L  L   +  ++ ++P         + + +SDN L  + PT      ++L  +
Sbjct: 156 LPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLP----SELYKL 206

Query: 352 FLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP 411
           + +NN LT    LP     L  L++S N  +  LP        EL  L +S N    S+P
Sbjct: 207 WAYNNRLT---SLPALPSGLKELIVSGNR-LTSLPVL----PSELKELMVSGNRLT-SLP 257

Query: 412 PSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVF 471
                   LL L +  N  +R LP+  L    S   +NL  N    +       +     
Sbjct: 258 MLPS---GLLSLSVYRNQLTR-LPES-LIHLSSETTVNLEGNPLSERTLQALREITSAP- 311

Query: 472 LFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ--LPRWIGKFSNLDVLLMSRNSFEG 529
            +                 +    L  ++ ++  +   P    ++        +      
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSL- 370

Query: 530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLR-YLFPHNNSLSGTIP-NALLQSSQ 587
               +LS  E        + ++   L   +   +LR   F      + +          Q
Sbjct: 371 -FLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQ 429

Query: 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNL 622
           +  + L  N   G        D++L AL+  G  +
Sbjct: 430 MKNVQLVHNAEKGQY------DNDLAALVATGREM 458

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 74/350 (21%), Positives = 109/350 (31%), Gaps = 91/350 (26%)

Query: 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN 501
                 +N+  +       P  +  A +  L + DN  T  L         L  L+VS N
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCL-PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 502 MLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH 561
            L+  LP        L +                S L     L I  N+L          
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCK---LWIFGNQLT---SLPVLP 140

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
             L+ L   +N L+ ++P      S+L  L   +N     +  L    S L+ L +  N 
Sbjct: 141 PGLQELSVSDNQLA-SLPALP---SELCKLWAYNN----QLTSLPMLPSGLQELSVSDNQ 192

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681
           L  ++P     L KL       N L                           +LPA    
Sbjct: 193 LA-SLPTLPSELYKL---WAYNNRLT--------------------------SLPAL--- 219

Query: 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNF 741
                                     +  L +S N LT  +P     L E   L +S N 
Sbjct: 220 -----------------------PSGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNR 252

Query: 742 LSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           L+ S+P   S L    S+ +  N+L  ++P  L  LS     N+  N LS
Sbjct: 253 LT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 80/339 (23%), Positives = 117/339 (34%), Gaps = 45/339 (13%)

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
              VLN+    ++ T+P  L        + + DNNL     T L     +L  + +  N 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNL-----TSLPALPPELRTLEVSGNQ 92

Query: 358 LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM 417
           LT    LP     L  L I +N     LP     +   L  L +  N    S+P      
Sbjct: 93  LT---SLPVLPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVLPP-- 141

Query: 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN 477
             L  L +S N  +  LP         L  +   +N       P     + L  L ++DN
Sbjct: 142 -GLQELSVSDNQLAS-LPALP----SELCKLWAYNNQL--TSLPM--LPSGLQELSVSDN 191

Query: 478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSN 537
           Q    L       S LY L   NN L+  LP        L  L++S N     + V  S 
Sbjct: 192 QLA-SLPTLP---SELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSE 242

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
           L   + L +S N+L          S L  L  + N L+  +P +L+  S  TT++L  N 
Sbjct: 243 L---KELMVSGNRL---TSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKL 636
            S      + E ++                      R L
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 70/400 (17%), Positives = 121/400 (30%), Gaps = 120/400 (30%)

Query: 368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSS 427
                 L +  +  +  LP+    +   +  L +  N+   S+P        L  L++S 
Sbjct: 39  NNGNAVLNVGESG-LTTLPDC---LPAHITTLVIPDNNLT-SLPALPP---ELRTLEVSG 90

Query: 428 NNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGL 487
           N  +  LP       + L   +    +            + L  L++  NQ T  L V  
Sbjct: 91  NQLT-SLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLP 140

Query: 488 LNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDIS 547
                L  L VS+N L+  LP        L  L    N     + +  S L+    L +S
Sbjct: 141 PG---LQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQE---LSVS 189

Query: 548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN 607
           +N+L                         ++P      S+L  L   +N     +  L  
Sbjct: 190 DNQL------------------------ASLPTLP---SELYKLWAYNN----RLTSLPA 218

Query: 608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667
             S L+ L++ GN L  ++P     L++L    +S N L                     
Sbjct: 219 LPSGLKELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT-------------------- 254

Query: 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIG 727
                 +LP                               +  L +  N+LT  +P  + 
Sbjct: 255 ------SLPML--------------------------PSGLLSLSVYRNQLT-RLPESLI 281

Query: 728 YLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
           +L     +NL  N LS    ++   +    S       + 
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 9e-10
 Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 43/184 (23%)

Query: 91  SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTS 150
           SL     EL  L   +N+          +       L+ L++  N    SL  L + L  
Sbjct: 155 SLPALPSELCKLWAYNNQLT--------SLPMLPSGLQELSVSDNQL-ASLPTLPSELYK 205

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN 210
           L +   +  S                L+ L +SGNR+T SL          L EL ++ N
Sbjct: 206 LWAYNNRLTSLPA---------LPSGLKELIVSGNRLT-SLP----VLPSELKELMVSGN 251

Query: 211 EFDGL-------------------LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL 251
               L                   LP+ L +L+    ++L  N LS    L  +  +TS 
Sbjct: 252 RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSA 310

Query: 252 EYLS 255
              S
Sbjct: 311 PGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI 770
           L++  + LT  +P  +     I  L + +N L+ S+P     L+   ++++S N+L   +
Sbjct: 45  LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SL 96

Query: 771 PPELGELSFLAIFNVSYNNLSGTVPN 796
           P     L  L+IF+    +L      
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPSG 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 8e-22
 Identities = 54/234 (23%), Positives = 83/234 (35%), Gaps = 12/234 (5%)

Query: 126 QLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGN 185
             ++LN+  N      V     L  L  L L  N              L NL  L+L  N
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFDN 122

Query: 186 RITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVI 245
           R+T ++       L  L EL +  N  + +     + +  LR LDL   K    +     
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 246 ANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVL 302
             L++L YL+L   + +E   +  L    +L+   LS      +   +F  L    L+ L
Sbjct: 182 EGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--LQKL 236

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
            +    I                I+L+ NNL    P  L      LE + L +N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 61/284 (21%), Positives = 99/284 (34%), Gaps = 58/284 (20%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI-CDLKNLVELNI 207
           T+   L L  N             +LR+LE+L LS N I    I  G    L NL  L +
Sbjct: 64  TNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLEL 119

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
            +N    +       L+ L+ L L +N +  ++P      + SL  L L +         
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL-------- 170

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                       +LS +      F  L    L+ LNL  CN+   IP           +D
Sbjct: 171 ----K-------RLSYISEGA--FEGLSN--LRYLNLAMCNLR-EIPNLTPLIK-LDELD 213

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPE 387
           LS N+L         Q    L+ +++  + +                VI  N+F      
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ---------------VIERNAFDN---- 253

Query: 388 NFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNF 430
                L  LV ++++ N+    +P  +   +  L  + L  N +
Sbjct: 254 -----LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 18/199 (9%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I +  F     L+ L+L DNR               L +LK L +  N            
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 148 LTSLTSLFLQGN----SFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLV 203
           + SL  L L         SEG         L NL  L+L+   +     +  +  L  L 
Sbjct: 159 IPSLRRLDLGELKRLSYISEG-----AFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLD 210

Query: 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           EL+++ N    + P     L +L+ L +  +++   +  +   NL SL  ++L  N+   
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT- 268

Query: 264 SFPLSVLANHSRLEVFQLS 282
             P  +      LE   L 
Sbjct: 269 LLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 59/363 (16%), Positives = 104/363 (28%), Gaps = 92/363 (25%)

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
             ++LNL    I        ++      + LS N++  T           L  + LF+N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123

Query: 358 LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GY 416
           LT                I N +F+          L +L  L +  N  E SIP      
Sbjct: 124 LT---------------TIPNGAFVY---------LSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
           +  L  LDL        + +       +L ++NL+      +  P    L KL  L L+ 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSG 216

Query: 477 NQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535
           N  +  +  G       L  L +  + +   + R    F NL                  
Sbjct: 217 NHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIER--NAFDNL------------------ 254

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
                                      SL  +   +N+L+    +       L  + L  
Sbjct: 255 --------------------------QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 596 NEFSGNIAHLINEDSNLRAL--LLRGNNLQGNIPEPLC----HLRKLAIVDISYNTLNGP 649
           N ++         + ++  L   ++            C    +L+   I ++  N     
Sbjct: 289 NPWNC--------NCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCY 340

Query: 650 IPS 652
            P 
Sbjct: 341 APV 343

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 66/283 (23%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDIS 547
           ++  +L++  N +            +L++L +SRN   + E      L+NL     L++ 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL---NTLELF 120

Query: 548 ENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFSGNIAHL 605
           +N+L   P       S L+ L+  NN +  +IP+        L  LDL +      ++++
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL---KRLSYI 176

Query: 606 INED----SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM 661
                   SNLR L L   NL+  IP  L  L KL  +D+S N L+   P  F       
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG----- 229

Query: 662 EKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721
                                                      L ++  L +  +++   
Sbjct: 230 -------------------------------------------LMHLQKLWMIQSQIQVI 246

Query: 722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
             +    L  +  +NL++N L+      F+ L   E + L +N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 54/307 (17%), Positives = 98/307 (31%), Gaps = 65/307 (21%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550
           +    +      L  ++P  I   +N  +L +  N  +        +L    IL +S N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 551 LYGPLEFS-SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS----GNIAHL 605
           +      + +  ++L  L   +N L+     A +  S+L  L LR+N            +
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 606 INEDSNLRALLLRGNNLQGNIPE-PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG 664
                +LR L L        I E     L  L  ++++   L   IP+  T         
Sbjct: 160 ----PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTP-------- 205

Query: 665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS 724
                                                   L  +  LDLS N L+   P 
Sbjct: 206 ----------------------------------------LIKLDELDLSGNHLSAIRPG 225

Query: 725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIF 783
               L  +  L +  + +      +F NL+    ++L++N L   +P +    L  L   
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284

Query: 784 NVSYNNL 790
           ++ +N  
Sbjct: 285 HLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 52/262 (19%), Positives = 86/262 (32%), Gaps = 40/262 (15%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
           ++ R L  H N +     N+      L  L L  N          N  +NL  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN----ISLWMEKGNYYNSTLSLALPA 677
           L         +L KL  + +  N +       F        L + +    +     A   
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-- 181

Query: 678 EDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL 737
                                    + L  +  L+L+   L  +IP+ +  L ++  L+L
Sbjct: 182 -------------------------EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDL 214

Query: 738 SNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPN 796
           S N LS   P SF  L   + + +  +++   I       L  L   N+++NNL+  +P 
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLP- 271

Query: 797 KGQFANFDESNY---RGNPYLC 815
              F             NP+ C
Sbjct: 272 HDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 36/141 (25%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           +  +    P  +L  LDLS N                     +  I   SF         
Sbjct: 197 LREIPNLTPLIKLDELDLSGNH--------------------LSAIRPGSF--------Q 228

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L  L  L++  +             NL++L  ++L+ N +T  L       L +L  ++
Sbjct: 229 GLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 207 INENEFDGLLPQCLSNLTYLR 227
           ++ N +      C  ++ +L 
Sbjct: 286 LHHNPW-----NCNCDILWLS 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 12/234 (5%)

Query: 126 QLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGN 185
             + LN+  N+           L  L  L L  NS  +          L +L  L+L  N
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDN 133

Query: 186 RITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVI 245
            +T  +       L  L EL +  N  + +     + +  L  LDL   K    +     
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 246 ANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVL 302
             L +L+YL+L   + ++   +  L     LE  ++S      +   +F  L    LK L
Sbjct: 193 EGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--LKKL 247

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
            + +  +S               ++L+ NNL  + P  L      L  + L +N
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 59/284 (20%), Positives = 101/284 (35%), Gaps = 58/284 (20%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI-CDLKNLVELNI 207
           ++   L L  N+            +L +LEVL L  N I    I  G    L +L  L +
Sbjct: 75  SNTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLEL 130

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
            +N    +       L+ LR L L +N +  ++P      + SL  L L +         
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL-------- 181

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                       +L  +      F  L    LK LNL  CNI   +P           ++
Sbjct: 182 ----K-------KLEYISEGA--FEGLFN--LKYLNLGMCNIK-DMPNLTPLVG-LEELE 224

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPE 387
           +S N+             + L+ +++ N+ ++               +I  N+F G    
Sbjct: 225 MSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVS---------------LIERNAFDG---- 264

Query: 388 NFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNF 430
                L  LV L+++ N+   S+P  +   +  L+ L L  N +
Sbjct: 265 -----LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 46/199 (23%), Positives = 71/199 (35%), Gaps = 18/199 (9%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I +  F     L+ L+L DN                L +L+ L +  N            
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 148 LTSLTSLFLQGN----SFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLV 203
           + SL  L L         SEG         L NL+ L+L    I     M  +  L  L 
Sbjct: 170 VPSLMRLDLGELKKLEYISEG-----AFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLE 221

Query: 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           EL ++ N F  + P     L+ L+ L + ++++S  +  +    L SL  L+L  N+   
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS- 279

Query: 264 SFPLSVLANHSRLEVFQLS 282
           S P  +      L    L 
Sbjct: 280 SLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 65/340 (19%), Positives = 111/340 (32%), Gaps = 74/340 (21%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV---ISNNS 380
           RY++L +NN+         ++   LE++ L  N +   ++   +   L  L    + +N 
Sbjct: 78  RYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIR-QIE-VGAFNGLASLNTLELFDNW 134

Query: 381 FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFL 439
            +  +P      L +L  L +  N  E SIP      +  L+ LDL        + +   
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 440 TSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDV 498
               +L+++NL       +  P    L  L  L ++ N F   +  G     SSL  L V
Sbjct: 193 EGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWV 249

Query: 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
            N+ +S  + R    F  L                                         
Sbjct: 250 MNSQVS-LIER--NAFDGL----------------------------------------- 265

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRAL--L 616
              +SL  L   +N+LS    +       L  L L  N +        N D ++  L   
Sbjct: 266 ---ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW--------NCDCDILWLAWW 314

Query: 617 LRGNNLQGNIPEPLC----HLRKLAIVDISYNTLNGPIPS 652
           LR      +     C    H+R   +V++   +     P 
Sbjct: 315 LREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPF 354

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 59/304 (19%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550
           +    +  +   LS ++P+ I   SN   L +  N+ +   +    +L    +L +  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 551 LYG--PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE 608
           +       F+   +SL  L   +N L+     A    S+L  L LR+N      ++  N 
Sbjct: 111 IRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 609 DSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667
             +L  L L        I E     L  L  +++    +   +P+  T            
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP----------- 216

Query: 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIG 727
                                                L  +  L++S N      P    
Sbjct: 217 -------------------------------------LVGLEELEMSGNHFPEIRPGSFH 239

Query: 728 YLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVS 786
            L  +  L + N+ +S     +F  L     ++L++N L+  +P +    L +L   ++ 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 787 YNNL 790
           +N  
Sbjct: 299 HNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 36/141 (25%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           I +M    P   L  L++S N                        I   SF         
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNH--------------------FPEIRPGSF--------H 239

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L+SL  L++  +  S           L +L  L+L+ N ++ SL       L+ LVEL+
Sbjct: 240 GLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

Query: 207 INENEFDGLLPQCLSNLTYLR 227
           ++ N +      C  ++ +L 
Sbjct: 297 LHHNPW-----NCDCDILWLA 312

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 25/261 (9%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +L     +  G ++  +        L  +T+L   G     G    +G+  L NL  L+L
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
             N+IT    +  + +L  + EL ++ N    +    ++ L  ++ LDL+S +++    +
Sbjct: 71  KDNQITD---LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD---V 122

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET-ENFPWLPKFQLKV 301
           + +A L++L+ L L  N       +S LA  + L+   +   QV        L K  L  
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDLTPLANLSK--LTT 177

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
           L      IS   P  L    +   + L +N + D  P   L N + L I+ L N  +T  
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQ 232

Query: 362 LQLPNSKRNLPHLVISNNSFI 382
               N+   +P++V   +   
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
               L N   +    + +T         DL  +  L+        +  + +  L  L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET- 288
           +L  N+++    L+ + NLT +  L L  N  +    ++ L +   ++   L+  Q+   
Sbjct: 69  ELKDNQITD---LAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLTSTQITDV 122

Query: 289 ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKL 348
                L    L+VL L    I+   P  L    + +Y+ + +  + D  P   L N +KL
Sbjct: 123 TPLAGLSN--LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLSKL 175

Query: 349 EIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG 408
             +   +N ++ ++    S  NL  + + NN  I  +          L  + ++  +   
Sbjct: 176 TTLKADDNKIS-DISPLASLPNLIEVHLKNNQ-ISDVSPLAN--TSNLFIVTLTNQTIT- 230

Query: 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453
           + P    Y   L+  ++        +    ++   +    NL+ N
Sbjct: 231 NQPVF--YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 25/228 (10%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           +  +        L  L+L DN+       K      +L ++  L +  N      V  + 
Sbjct: 53  VTTIEGVQYLNNLIGLELKDNQITDLAPLK------NLTKITELELSGNPLKN--VSAIA 104

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L S+ +L L     ++       L  L NL+VL L  N+IT    +  +  L NL  L+
Sbjct: 105 GLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLS 157

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           I   +   L P  L+NL+ L  L    NK+S    +S +A+L +L  + L +N   +   
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISD--- 209

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
           +S LAN S L +  L+   +   N P      L V N+        I 
Sbjct: 210 VSPLANTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 86  PIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL 145
           P+ N+S     Q +  LDL+  +               L  L++L +  N      +  L
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLA------GLSNLQVLYLDLNQITN--ISPL 147

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
             LT+L  L +     S        L NL  L  L    N+I+    +  +  L NL+E+
Sbjct: 148 AGLTNLQYLSIGNAQVS----DLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEV 200

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           ++  N+   + P  L+N + L ++ L++  ++ N P+    NL     +     
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 46/261 (17%), Positives = 85/261 (32%), Gaps = 23/261 (8%)

Query: 219 CLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
               L     +    + ++        A+L  +  LS F         +  +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIG 67

Query: 279 FQLSRLQVET-ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337
            +L   Q+        L K  +  L L    +       +      + +DL+   + D  
Sbjct: 68  LELKDNQITDLAPLKNLTK--ITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT 123

Query: 338 PTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELV 397
           P   L   + L++++L  N +T    L     NL +L I N   +  L       L +L 
Sbjct: 124 P---LAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQ-VSDLTPLAN--LSKLT 176

Query: 398 YLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457
            L    N     I P +  +  L+ + L +N  S D+    L +  +L  + L++     
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVS--PLANTSNLFIVTLTNQTITN 231

Query: 458 QIFPKYMNLAKLVFLFLNDNQ 478
           Q      NL     +      
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 46/269 (17%)

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
           L   + +   +++   ++  +   ++ +  L       +  +    +    +L  + L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKD 72

Query: 453 NYFDGQI--FPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW 510
           N    QI       NL K+  L L+ N     +   +    S+  LD+++  ++   P  
Sbjct: 73  N----QITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570
           +   SNL VL +  N    ++S  L+ L   + L I   ++   L   +N S L  L   
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKAD 181

Query: 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPL 630
           +N +S  I   L     L  + L++N+ S                             PL
Sbjct: 182 DNKIS-DISP-LASLPNLIEVHLKNNQISD--------------------------VSPL 213

Query: 631 CHLRKLAIVDISYNTLNGPIPSCFTNISL 659
            +   L IV ++  T+         N+ +
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 57/323 (17%), Positives = 116/323 (35%), Gaps = 57/323 (17%)

Query: 242 LSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKV 301
           +     L +   ++   ++  ++   + L                            +  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDG--------------------------ITT 45

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
           L+     ++ TI   +QY  +   ++L DN + D  P   L+N TK+  + L  N L  N
Sbjct: 46  LSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLK-N 99

Query: 362 LQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLL 421
           +      +++  L +++   I  +    G  L  L  L +  N    +I P +  +  L 
Sbjct: 100 VSAIAGLQSIKTLDLTSTQ-ITDVTPLAG--LSNLQVLYLDLNQIT-NISP-LAGLTNLQ 154

Query: 422 FLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG 481
           +L + +   S DL    L +   L  +    N           +L  L+ + L +NQ + 
Sbjct: 155 YLSIGNAQVS-DLT--PLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD 209

Query: 482 RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVA 541
                L N S+L+++ ++N  ++ Q        +NL V  + +      ++         
Sbjct: 210 --VSPLANTSNLFIVTLTNQTITNQPV---FYNNNLVVPNVVKGPSGAPIA--------- 255

Query: 542 RILDISENKLYGPLEFSSNHSSL 564
               IS+N  Y     + N +S 
Sbjct: 256 -PATISDNGTYASPNLTWNLTSF 277

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 38/260 (14%), Positives = 92/260 (35%), Gaps = 47/260 (18%)

Query: 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR 594
              L  A  +   ++ +   +  + +   +  L      ++ TI   +   + L  L+L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 595 DNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS 652
           DN+ +    + +L    + +  L L GN L       +  L+ +  +D++   +   +  
Sbjct: 72  DNQITDLAPLKNL----TKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD-VTP 124

Query: 653 CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG-DVLKYMTGL 711
                +L           L L                     N+  +      L  +  L
Sbjct: 125 LAGLSNL---------QVLYLD-------------------LNQITNISPLAGLTNLQYL 156

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
            + + +++ D+ + +  L ++  L   +N +S  I    ++L     + L  N+++   P
Sbjct: 157 SIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP 212

Query: 772 PELGELSFLAIFNVSYNNLS 791
             L   S L I  ++   ++
Sbjct: 213 --LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 51/333 (15%), Positives = 107/333 (32%), Gaps = 75/333 (22%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
            LA  + +    +  T    V   +   +  L      ++            +       
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT--------TIEGVQ------ 60

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQ 584
                     L+NL     L++ +N++   L    N + +  L    N L     +A+  
Sbjct: 61  ---------YLNNLIG---LELKDNQITD-LAPLKNLTKITELELSGNPL--KNVSAIAG 105

Query: 585 SSQLTTLDLRDNEFSG--NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642
              + TLDL   + +    +A L    SNL+ L L  N +  NI  PL  L  L  + I 
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGL----SNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIG 159

Query: 643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG 702
              +        ++++                        +  ++       N+      
Sbjct: 160 NAQV--------SDLT---------------------PLANLSKLTTLKADDNKISDISP 190

Query: 703 -DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
              L  +  + L +N+++ D+ S +     +  + L+N  ++       +NL +    ++
Sbjct: 191 LASLPNLIEVHLKNNQIS-DV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP---NV 245

Query: 762 SYNKLNGQIPP-ELGELSFLAIFNVSYNNLSGT 793
                   I P  + +    A  N+++N  S  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 60/337 (17%), Positives = 110/337 (32%), Gaps = 66/337 (19%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
              T L LQ N  SE          L++L  L L  N+I+  +  +    L+ L +L I+
Sbjct: 54  PDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
           +N    + P   S+L     L +  N++   +P  V + L ++  + +  N         
Sbjct: 111 KNHLVEIPPNLPSSLVE---LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN--------- 157

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
                       L     E   F  L   +L  L +    ++  IP+ L        + L
Sbjct: 158 -----------PLENSGFEPGAFDGL---KLNYLRISEAKLT-GIPKDL--PETLNELHL 200

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
             N +        L   +KL  + L +N +                +I N S        
Sbjct: 201 DHNKI-QAIELEDLLRYSKLYRLGLGHNQIR---------------MIENGSLSF----- 239

Query: 389 FGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR-----DLPKHFLTSCV 443
               LP L  L +  N     +P  +  ++ L  + L +NN ++       P  F     
Sbjct: 240 ----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 444 SLEFMNLSHNYFDGQIFPKYM--NLAKLVFLFLNDNQ 478
               ++L +N              +   + +   + +
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 64/300 (21%), Positives = 106/300 (35%), Gaps = 46/300 (15%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           +    F   Q L+ L L +N+     E         L++L+ L I  N     + P L  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHL-VEIPPNL-- 121

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207
            +SL  L +  N   +  K       LRN+  +++ GN +  S    G  D   L  L I
Sbjct: 122 PSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           +E +  G+       L     L L  NK+   + L  +   + L  L L  N        
Sbjct: 180 SEAKLTGIPKDLPETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-------- 227

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
                       Q+  ++  +    +LP   L+ L+L +  +S  +P  L      + + 
Sbjct: 228 ------------QIRMIENGS--LSFLP--TLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 328 LSDNNL----VDTF-PTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV---ISNN 379
           L  NN+    V+ F P            + LFNN +      P + R +   +     N 
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 53/287 (18%), Positives = 100/287 (34%), Gaps = 36/287 (12%)

Query: 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSN 428
           +   L + NN  I +L ++    L  L  L +  N     I       + +L  L +S N
Sbjct: 55  DTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 429 NFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM--NLAKLVFLFLNDNQFT-GRLEV 485
           +   ++P +  +S V L    +  N    +  PK +   L  +  + +  N       E 
Sbjct: 113 HLV-EIPPNLPSSLVEL---RIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 486 GLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVAR 542
           G  +   L  L +S   L+  +P+       L+ L +  N   + E +  ++ S L    
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYR-- 221

Query: 543 ILDISENKLY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS- 599
            L +  N++         S   +LR L   NN LS  +P  L     L  + L  N  + 
Sbjct: 222 -LGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278

Query: 600 ---GNIAHL--INEDSNLRALLLRGNNLQ-GNIPE----PLCHLRKL 636
               +   +    + +    + L  N +    +       +     +
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 20/257 (7%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQF 479
           LDL +N+ S  L K        L  + L +N       + F     L KL  L+++ N  
Sbjct: 59  LDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAF---SPLRKLQKLYISKNHL 114

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ---LS 536
              +   L   SSL  L + +N +            N++ + M  N  E +   +     
Sbjct: 115 V-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFD 170

Query: 537 NLEVARILDISENKLYGPLEFSSNH-SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
            L++   L ISE KL        +   +L  L   +N +       LL+ S+L  L L  
Sbjct: 171 GLKL-NYLRISEAKL---TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 596 NEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT 655
           N+        ++    LR L L  N L   +P  L  L+ L +V +  N +     + F 
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 656 NISLWMEKGNYYNSTLS 672
            +   +++  Y   +L 
Sbjct: 286 PVGFGVKRAYYNGISLF 302

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
                L   NN +S    +       L  L L +N+ S       +    L+ L +  N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN----ISLWMEKGNYYNSTLSLALPA 677
           L   IP  L     L  + I  N +       F+       + M      NS        
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF------ 164

Query: 678 EDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALN 736
           E       ++    +++ +      D+ + +  L L  N++   I  E      +++ L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
           L +N +      S S L     + L  NKL+ ++P  L +L  L +  +  NN++
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 68/315 (21%)

Query: 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528
              L L +N  +   +        LY L + NN +S    +       L  L +S+N   
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 529 GDVSVQLSNLEVARILDISENKLY--GPLEFSSNHSSLRYLFPHNNSL-SGTIPNALLQS 585
                  S+L     L I +N++       FS    ++  +    N L +          
Sbjct: 116 EIPPNLPSSLVE---LRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 586 SQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYN 644
            +L  L + + + +G    L      L  L L  N +Q  I    L    KL  + + +N
Sbjct: 172 LKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV 704
            +        +                                                 
Sbjct: 228 QIRMIENGSLSF------------------------------------------------ 239

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMT------ES 758
           L  +  L L +N+L+  +P+ +  L  +  + L  N ++      F  +           
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 759 MDLSYNKL-NGQIPP 772
           + L  N +   ++ P
Sbjct: 299 ISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
            + L+ L L  N+ +  E            +L  L +G+N         L+ L +L  L 
Sbjct: 192 PETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT--GSLIMQGICDLKNLVELNI-----N 208
           L  N  S       GL +L+ L+V+ L  N IT  G      +         N      N
Sbjct: 248 LDNNKLSR---VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNK 235
              +  + P     +T    +   + K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 53/305 (17%), Positives = 100/305 (32%), Gaps = 45/305 (14%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
            ++ SL L  N  +     N  L    NL+ L L+ N I  ++       L +L  L+++
Sbjct: 52  EAVKSLDLSNNRITY--ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
            N    L       L+ L  L+L  N        S+ ++LT L+ L + +          
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-------- 160

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
                        +++Q +   F  L    L+ L +   ++    P+ L+   +  ++ L
Sbjct: 161 -----------TFTKIQRKD--FAGLT--FLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
                        +   + +E + L +  L            L       NS I      
Sbjct: 206 HMKQH-ILLLEIFVDVTSSVECLELRDTDLDT-----FHFSELSTGE--TNSLIK----- 252

Query: 389 FGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM 448
                     + ++  S    +   +  +  LL L+ S N     +P        SL+ +
Sbjct: 253 ----KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI 306

Query: 449 NLSHN 453
            L  N
Sbjct: 307 WLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 57/277 (20%), Positives = 98/277 (35%), Gaps = 23/277 (8%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP--LL 145
           I+ S       L  L L+ N     EE+    +  SL  L+ L++ YN    S +     
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYL--SNLSSSWF 120

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
             L+SLT L L GN +           +L  L++L +        +  +    L  L EL
Sbjct: 121 KPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
            I+ ++     P+ L ++  +  L L   +    L    +   +S+E L L D       
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 266 P--LSVLANHSRLEVFQLSRLQVETENFPWLPKF-----QLKVLNLRHCNISGTIPRFLQ 318
              LS    +S ++ F    +++  E+   + K       L  L      +         
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298

Query: 319 YQYDFRYIDLSDNNL------VDTFPTWLLQNNTKLE 349
                + I L  N        +D    WL +N+ K +
Sbjct: 299 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 335

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 47/303 (15%), Positives = 109/303 (35%), Gaps = 50/303 (16%)

Query: 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358
           +K L+L +  I+      LQ   + + + L+ N + +T       +   LE + L  N+L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM--GY 416
           +                +S++ F           L  L +L++  N ++ ++  +    +
Sbjct: 113 S---------------NLSSSWFKP---------LSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM--NLAKLVFLFL 474
           + +L  L + + +    + +        LE + +  +    Q +      ++  +  L L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLIL 205

Query: 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ 534
           +  Q    LE+ +   SS+  L++ +  L                     +      +  
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNS 249

Query: 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDL 593
           L      R + I++  L+  ++  +  S L  L    N L  ++P+ +    + L  + L
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 594 RDN 596
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 48/251 (19%), Positives = 80/251 (31%), Gaps = 39/251 (15%)

Query: 420 LLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLND 476
           +  LDLS+N  +  +    L  CV+L+ + L+ N     +   F    +L  L  L L+ 
Sbjct: 54  VKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFS---SLGSLEHLDLSY 109

Query: 477 NQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535
           N  +  L        SSL  L++  N            FS+L  L +            L
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQI------------L 154

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
               +     I      G        + L  L    + L    P +L     ++ L L  
Sbjct: 155 RVGNMDTFTKIQRKDFAGL-------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 596 NEFSGNIAHLINEDSNLRALLLRGNNLQGN--------IPEPLCHLRKLAIVDISYNTLN 647
            +    +   ++  S++  L LR  +L               L        V I+  +L 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 648 GPIPSCFTNIS 658
             +      IS
Sbjct: 268 -QVMKLLNQIS 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 59/385 (15%), Positives = 110/385 (28%), Gaps = 82/385 (21%)

Query: 391 LILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450
            +    V   +   S E S   +    +R      SS + +  +P     +  SL   +L
Sbjct: 4   TLWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLTEAVKSL---DL 59

Query: 451 SHN---YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA-SSLYVLDVSNNMLSGQ 506
           S+N   Y              L  L L  N     +E    ++  SL  LD+S N LS  
Sbjct: 60  SNNRITYISNSDLQ---RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-- 113

Query: 507 LPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY--GPLEFSSNHSSL 564
                          +S + F+      LS+L     L++  N     G     S+ + L
Sbjct: 114 --------------NLSSSWFKP-----LSSL---TFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 565 RYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ 623
           + L   N      I        + L  L++  ++        +    N+  L+L      
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 624 GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRES 683
             +   +     +  +++    L+    S  +                            
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG-------------------------- 245

Query: 684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS 743
                         E+           + ++   L   +   +  +  +  L  S N L 
Sbjct: 246 --------------ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 744 GSIPRS-FSNLKMTESMDLSYNKLN 767
            S+P   F  L   + + L  N  +
Sbjct: 291 -SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 51/317 (16%), Positives = 100/317 (31%), Gaps = 72/317 (22%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDIS 547
            ++  LD+SNN ++      + +  NL  L+++ N   + E D    L +LE    LD+S
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH---LDLS 108

Query: 548 ENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLI 606
            N L      +    SSL +L    N        +L   S LT L +           + 
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQILRVGNMDTFTKIQ 166

Query: 607 NED----SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662
            +D    + L  L +  ++LQ   P+ L  ++ ++ + +        +            
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV-------- 218

Query: 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722
                                                   DV   +  L+L   +L    
Sbjct: 219 ----------------------------------------DVTSSVECLELRDTDLDTFH 238

Query: 723 PSEI--------GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE- 773
            SE+                + +++  L   + +  + +     ++ S N+L   +P   
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

Query: 774 LGELSFLAIFNVSYNNL 790
              L+ L    +  N  
Sbjct: 297 FDRLTSLQKIWLHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLT 146
           +  + F   + L +L L  N     +          L  L+ L++  N+   S+ P    
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDA----AAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L  L +L L      E          L  L+ L L  N +  +L      DL NL  L 
Sbjct: 103 GLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           ++ N    +  +    L  L  L L  N+++ ++      +L  L  L LF N+   + P
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 267 LSVLANHSRLEVFQLSR 283
              LA    L+  +L+ 
Sbjct: 218 TEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 51/211 (24%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR 186
            + + +  N  +        +  +LT L+L  N  +           L  LE LDLS N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGLALLEQLDLSDNA 91

Query: 187 ITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA 246
              S+       L  L  L+++      L P     L  L+ L L  N L   LP     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ---VETENFPWLPKFQLKVLN 303
           +L +L +L L  N    S P         L+   L + +   V    F  L +  L  L 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR--LMTLY 207

Query: 304 LRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
           L   N+S      L      +Y+ L+DN  V
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 8e-19
 Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 12/212 (5%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
            +   +FL GN  S            RNL +L L  N +   +       L  L +L+++
Sbjct: 32  AASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 209 ENE-FDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           +N     + P     L  L  L L    L   L   +   L +L+YL L DN  Q + P 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 268 SVLANHSRLEVFQLS--RLQ-VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR 324
               +   L    L   R+  V    F  L    L  L L    ++   P   +      
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
            + L  NNL    PT  L     L+ + L +N
Sbjct: 205 TLYLFANNL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 53/280 (18%), Positives = 86/280 (30%), Gaps = 77/280 (27%)

Query: 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
              + + L GNRI+  +        +NL  L ++ N    +     + L  L  LDLS N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWL 294
               ++  +    L  L  L L     Q      +    + L                  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAAL------------------ 131

Query: 295 PKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLF 354
                                        +Y+ L DN L    P    ++   L  +FL 
Sbjct: 132 -----------------------------QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 355 NNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414
            N ++                +   +F G         L  L  L + QN     + P  
Sbjct: 162 GNRIS---------------SVPERAFRG---------LHSLDRLLLHQNRVA-HVHPHA 196

Query: 415 -GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453
              + RL+ L L +NN S  LP   L    +L+++ L+ N
Sbjct: 197 FRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 58/268 (21%), Positives = 90/268 (33%), Gaps = 25/268 (9%)

Query: 392 ILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450
           I      + +  N     +P +       L  L L SN  +R +     T    LE ++L
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDL 87

Query: 451 SHNYFDGQIFPK-YMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLP 508
           S N     + P  +  L +L  L L+       L  GL    ++L  L + +N L     
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 509 RWIGKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSL 564
                  NL  L +  N   S        L +L+    L + +N++         +   L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR---LLLHQNRVAHVHPHAFRDLGRL 203

Query: 565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG 624
             L+   N+LS     AL     L  L L DN +          D   R L       +G
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--------VCDCRARPLWAWLQKFRG 255

Query: 625 NIPEPLCH----LRKLAIVDISYNTLNG 648
           +  E  C     L    +  ++ N L G
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 49/238 (20%), Positives = 77/238 (32%), Gaps = 20/238 (8%)

Query: 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF---DGQIFPKYMNLAKLVFL 472
           Y E  +            +P     +   +    L  N         F        L  L
Sbjct: 9   YNEPKVTTSCPQQGLQA-VPVGIPAASQRI---FLHGNRISHVPAASFR---ACRNLTIL 61

Query: 473 FLNDNQFTGRLEVGLLNA-SSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRN---SF 527
           +L+ N    R++       + L  LD+S+N     +          L  L + R      
Sbjct: 62  WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 528 EGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSS 586
              +   L+ L   + L + +N L   P +   +  +L +LF H N +S     A     
Sbjct: 121 GPGLFRGLAAL---QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 587 QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
            L  L L  N  +    H   +   L  L L  NNL     E L  LR L  + ++ N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 32/195 (16%)

Query: 467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526
           A    +FL+ N+ +           +L +L + +N+L+          + L+ L +S N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS- 585
                  QL +++              P  F      L  L      L   +   L +  
Sbjct: 92  -------QLRSVD--------------PATFHGL-GRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 586 SQLTTLDLRDNEFS----GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI 641
           + L  L L+DN            L     NL  L L GN +          L  L  + +
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDL----GNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 642 SYNTLNGPIPSCFTN 656
             N +    P  F +
Sbjct: 185 HQNRVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 49/260 (18%), Positives = 78/260 (30%), Gaps = 58/260 (22%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
           ++ + +F H N +S     +      LT L L  N  +   A      + L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 622 LQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN 680
              ++       L +L  + +    L    P  F                          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------------------ 127

Query: 681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSN 739
                                   L  +  L L  N L   +P +    LG +  L L  
Sbjct: 128 ------------------------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 740 NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPNKG 798
           N +S    R+F  L   + + L  N++   + P    +L  L    +  NNLS  +P   
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALP-TE 219

Query: 799 QFANFDESNY---RGNPYLC 815
             A      Y     NP++C
Sbjct: 220 ALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 47/258 (18%), Positives = 79/258 (30%), Gaps = 64/258 (24%)

Query: 542 RILDISENKLY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS 599
           + + +  N++       F     +L  L+ H+N L+     A    + L  LDL DN   
Sbjct: 35  QRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 600 GNI-AHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIPSCFTNI 657
            ++     +    L  L L    LQ  +       L  L  + +  N L           
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---------- 142

Query: 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGL---DLS 714
                           ALP                          D  + +  L    L 
Sbjct: 143 ----------------ALPD-------------------------DTFRDLGNLTHLFLH 161

Query: 715 SNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE 773
            N ++  +P      L  +  L L  N ++   P +F +L    ++ L  N L+  +P E
Sbjct: 162 GNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

Query: 774 -LGELSFLAIFNVSYNNL 790
            L  L  L    ++ N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 78/440 (17%), Positives = 138/440 (31%), Gaps = 68/440 (15%)

Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
            L  L  LD   + IT    M GI  L  L +L    N    L    LS  T L  L   
Sbjct: 40  QLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD 93

Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFP 292
           SNKL+ NL ++    LT L YL+   N       +S       L     +R  +   +  
Sbjct: 94  SNKLT-NLDVT---PLTKLTYLNCDTNKL-TKLDVSQNPL---LTYLNCARNTLTEIDVS 145

Query: 293 WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF 352
              +  L  L+         +   +  Q     +D S N + +      +  N  L  + 
Sbjct: 146 HNTQ--LTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLN 197

Query: 353 LFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
              N +T              L ++                 +L +LD S N     I  
Sbjct: 198 CDTNNIT-------------KLDLNQ--------------NIQLTFLDCSSNKLT-EID- 228

Query: 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
            +  + +L + D S N  + +L    L+   +L  +       D        +  +L++ 
Sbjct: 229 -VTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLT------HNTQLIYF 280

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS 532
                +    L+V     + LY+LD     ++ +L   + +   L  L ++         
Sbjct: 281 QAEGCRKIKELDVTHN--TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT---E 332

Query: 533 VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLD 592
           + +S+    + L      +           +L   F             L  +S    + 
Sbjct: 333 LDVSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 593 LRDNEFSGNIAHLINEDSNL 612
               +  GN  ++   D  +
Sbjct: 392 PDLLDQFGNPMNIEPGDGGV 411

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 77/468 (16%), Positives = 147/468 (31%), Gaps = 57/468 (12%)

Query: 114 ENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVN 173
           + +++N                    +       L +LTSL    +S ++      G+  
Sbjct: 7   QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM----TGIEK 62

Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
           L  L  L  + N IT +L    +    NL  L  + N+   L    ++ LT L  L+  +
Sbjct: 63  LTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT 115

Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293
           NKL+  L +S       L YL+   N       +S     + L+     ++     +   
Sbjct: 116 NKLT-KLDVS---QNPLLTYLNCARNTL-TEIDVSHNTQLTELDCHLNKKI--TKLDVTP 168

Query: 294 LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL 353
             +  L  L+     I+       +       ++   NN+        L  N +L  +  
Sbjct: 169 QTQ--LTTLDCSFNKITELDVSQNKL---LNRLNCDTNNI-TKLD---LNQNIQLTFLDC 219

Query: 354 FNNFLTGNLQLPNSK-RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
            +N LT   ++  +    L +   S N  + +L  +    L +L  L   Q      I  
Sbjct: 220 SSNKLT---EIDVTPLTQLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDLL-EIDL 271

Query: 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
           +  +  +L++         ++L    +T    L  ++                  KLV+L
Sbjct: 272 T--HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITELDLS---QNPKLVYL 323

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS 532
           +LN+ + T  L+V       L  L   N  +       +GK   L+    +         
Sbjct: 324 YLNNTELT-ELDVSHNT--KLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEG------- 371

Query: 533 VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPN 580
            Q   +    + + S      P       + +                
Sbjct: 372 -QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 76/474 (16%), Positives = 142/474 (29%), Gaps = 46/474 (9%)

Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
             + V         D +       L  L  LD  ++ ++    ++ I  LT L  L    
Sbjct: 20  FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTS 73

Query: 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQ 318
           N+   +  LS   N   L        ++   +   L K  L  LN     ++        
Sbjct: 74  NNI-TTLDLSQNTN---LTYLACDSNKLTNLDVTPLTK--LTYLNCDTNKLTKLDVSQNP 127

Query: 319 YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISN 378
                 Y++ + N L        + +NT+L  +    N     L +      L  L  S 
Sbjct: 128 ---LLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSF 179

Query: 379 NSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHF 438
           N  I +L  +       L  L+   N+    +   +    +L FLD SSN  + ++    
Sbjct: 180 NK-ITELDVSQ---NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--- 228

Query: 439 LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498
           +T    L + + S N            L+KL  L           E+ L + + L     
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQA 282

Query: 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
                  +L   +   + L +L             Q   L     L ++  +L   L+ S
Sbjct: 283 EGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVY---LYLNNTELTE-LDVS 336

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLR 618
            N + L+ L   N  +     + + +   L      + +        +  +S   A+   
Sbjct: 337 HN-TKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

Query: 619 GNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLS 672
             +  GN          +     +  T              +  +      T++
Sbjct: 394 LLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 67/340 (19%), Positives = 104/340 (30%), Gaps = 46/340 (13%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
             P  +L  L+   N+                  L  LN   N+  E     ++  T LT
Sbjct: 102 VTPLTKLTYLNCDTNKLTK-------LDVSQNPLLTYLNCARNTLTE---IDVSHNTQLT 151

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
            L    N           +     L  LD S N+IT       +   K L  LN + N  
Sbjct: 152 ELDCHLNKKIT----KLDVTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLNCDTNNI 203

Query: 213 DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
             L    L+    L  LD SSNKL+  + ++    LT L Y     N       +S L+ 
Sbjct: 204 TKLD---LNQNIQLTFLDCSSNKLT-EIDVT---PLTQLTYFDCSVNPL-TELDVSTLSK 255

Query: 273 HSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
              L      +  +   +       QL       C     +   + +      +D     
Sbjct: 256 ---LTTLHCIQTDLLEIDLTHNT--QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG 308

Query: 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK-RNLPHLVISNNSFIGKLPENFGL 391
           + +      L  N KL  ++L N  LT   +L  S    L  L   N   I         
Sbjct: 309 ITELD----LSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAH-IQDFSSVGK- 359

Query: 392 ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFS 431
            +P L     ++     ++P         L + +S +   
Sbjct: 360 -IPALNNNFEAEGQTI-TMPKETLT-NNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 64/378 (16%), Positives = 131/378 (34%), Gaps = 47/378 (12%)

Query: 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476
           +  L  LD  +++ + D+    +     L  +  + N               L +L  + 
Sbjct: 41  LATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLDLS---QNTNLTYLACDS 94

Query: 477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS 536
           N+ T    + +   + L  L+   N L+ +L   + +   L  L  +RN+      + +S
Sbjct: 95  NKLT---NLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVS 145

Query: 537 NLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN 596
           +      LD   NK    L+ +   + L  L    N ++  +   + Q+  L  L+   N
Sbjct: 146 HNTQLTELDCHLNKKITKLDVTPQ-TQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTN 201

Query: 597 EFSGNIAHL-INEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT 655
               NI  L +N++  L  L    N L       +  L +L   D S N L     S  +
Sbjct: 202 ----NITKLDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLS 254

Query: 656 NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV--LKYMTGLDL 713
            ++            L + L       +     + F A+   +  + DV     +  LD 
Sbjct: 255 KLT---TLHCIQTDLLEIDL-------THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304

Query: 714 SSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE 773
            +  +T ++   +    ++  L L+N  L+  +    S+    +S+      +       
Sbjct: 305 QAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SS 356

Query: 774 LGELSFLAIFNVSYNNLS 791
           +G++  L     +     
Sbjct: 357 VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 82/502 (16%), Positives = 148/502 (29%), Gaps = 117/502 (23%)

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
            L  L+  + +I+      ++       +  + NN+  T     L  NT L  +   +N 
Sbjct: 43  TLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI-TTLD---LSQNTNLTYLACDSNK 96

Query: 358 LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM 417
           LT NL +      L +L    N  + KL  +     P L YL+ ++N+    I  S    
Sbjct: 97  LT-NLDVTPLT-KLTYLNCDTNK-LTKLDVS---QNPLLTYLNCARNTLT-EIDVSH--N 147

Query: 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN 477
            +L  LD   N     L    +T    L  ++ S N               L  L  + N
Sbjct: 148 TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTN 201

Query: 478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSN 537
             T   ++ L     L  LD S+N L+ ++   +   + L     S N         LS 
Sbjct: 202 NIT---KLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
           L     L   +  L   ++ + N + L Y                    ++  LD+  N 
Sbjct: 256 LT---TLHCIQTDLLE-IDLTHN-TQLIYFQAEGCR-------------KIKELDVTHN- 296

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657
                       + L  L  +   +       L    KL  + ++   L           
Sbjct: 297 ------------TQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL----------- 330

Query: 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE 717
                      + L ++                                 +  L   +  
Sbjct: 331 -----------TELDVSH-----------------------------NTKLKSLSCVNAH 350

Query: 718 LTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG---QIPPEL 774
           +  D    +G +  ++    +          + +N  +T ++        G    I P  
Sbjct: 351 IQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 775 GELSFLAIFNVSYNNLSGTVPN 796
           G +   A   +++ NLS   P 
Sbjct: 409 GGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 45/293 (15%), Positives = 88/293 (30%), Gaps = 58/293 (19%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
            I      P  +L  LD S N+    + ++        K L  LN   N+        +T
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELDVSQ-------NKLLNRLNCDTNN--------IT 204

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L                      L     L  LD S N++T       +  L  L   +
Sbjct: 205 KLD---------------------LNQNIQLTFLDCSSNKLTEI----DVTPLTQLTYFD 239

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
            + N    L    +S L+ L  L      L   + L+   + T L Y         +   
Sbjct: 240 CSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EIDLT---HNTQLIYFQAEGCRKIKELD 292

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYI 326
           ++   ++++L +       +   +    PK  L  L L +  ++  +   + +    + +
Sbjct: 293 VT---HNTQLYLLDCQAAGITELDLSQNPK--LVYLYLNNTELT-ELD--VSHNTKLKSL 344

Query: 327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
              + ++ D      +     L   F          +   +  +L   V  + 
Sbjct: 345 SCVNAHIQDFSS---VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 29/278 (10%)

Query: 515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSL 574
            N    + +    +   ++    L     LD   + +   +      + L  L   +N++
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNI 76

Query: 575 SGTIPNALLQSSQLTTLDLRDNEFSG-NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
           + T+   L Q++ LT L    N+ +  ++  L    + L  L    N L       +   
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLT---KLDVSQN 126

Query: 634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693
             L  ++ + NTL     S  T ++      N   + L +            ++     +
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT--------PQTQLTTLDCS 178

Query: 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNL 753
            N+         K +  L+  +N +T  +   +    ++  L+ S+N L+  I    + L
Sbjct: 179 FNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 754 KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
                 D S N L       L +L+ L   +    +L 
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 30/276 (10%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +  +    N+   S  +        L S+  +    +      K  +G+  L N+  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
           +GN++T    ++ + +LKNL  L ++EN+   L    L +L  L+ L L  N +S    +
Sbjct: 76  NGNKLTD---IKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD---I 127

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET-ENFPWLPKFQLKV 301
           + + +L  LE L L +N   +   ++VL+  ++L+   L   Q+        L K  L+ 
Sbjct: 128 NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVPLAGLTK--LQN 182

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT-- 359
           L L   +IS      L    +   ++L     ++              +     + +T  
Sbjct: 183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 360 -----GNLQLPNSKRNLPHLVISNNSFIGKLPENFG 390
                G+ + PN K +LP    +  SFI   P   G
Sbjct: 241 IISDDGDYEKPNVKWHLPEF-TNEVSFIFYQPVTIG 275

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 21/238 (8%)

Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
                      +L    +T         +L ++ ++  N ++   +  Q +  L  +  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET- 288
            L+ NKL+    +  +ANL +L +L L +N  ++   LS L +  +L+   L    +   
Sbjct: 74  FLNGNKLTD---IKPLANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDI 127

Query: 289 ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKL 348
                LP+  L+ L L +  I  T    L        + L DN + D  P   L   TKL
Sbjct: 128 NGLVHLPQ--LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKL 180

Query: 349 EIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSF 406
           + ++L  N ++ +L+     +NL  L + +       P N    L     +  +  S 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           I ++        +  L L+ N+    +         +LK L  L +  N   +  +  L 
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLA------NLKNLGWLFLDENKVKD--LSSLK 109

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L  L SL L+ N  S+      GLV+L  LE L L  N+IT    +  +  L  L  L+
Sbjct: 110 DLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLS 162

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           + +N+   ++P  L+ LT L+ L LS N +S    L  +A L +L+ L LF  
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + ++      + L  L L +N+       K  ++ + LK+LK L++ +N  ++  +  L 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD--INGLV 131

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            L  L SL+L  N  ++       L  L  L+ L L  N+I+    +  +  L  L  L 
Sbjct: 132 HLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLY 184

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +++N    L    L+ L  L VL+L S +   N P++  +NL     +   D        
Sbjct: 185 LSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 267 LSVLANHSRLEV 278
           +S   ++ +  V
Sbjct: 242 ISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 17/197 (8%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
            L  +  +  N++     ++ G+    ++  L ++ N L+   P  +    NL  L +  
Sbjct: 44  ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQ 584
           N  + D+S  L +L+  + L +  N +   +    +   L  L+  NN +  T    L +
Sbjct: 100 NKVK-DLSS-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKI--TDITVLSR 154

Query: 585 SSQLTTLDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642
            ++L TL L DN+ S    +A L    + L+ L L  N++  ++   L  L+ L ++++ 
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGL----TKLQNLYLSKNHIS-DL-RALAGLKNLDVLELF 208

Query: 643 YNTLNGPIPSCFTNISL 659
                    +  +N+ +
Sbjct: 209 SQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 45/264 (17%), Positives = 81/264 (30%), Gaps = 46/264 (17%)

Query: 242 LSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKV 301
           +            +L      ++   + L +                          +  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELNS--------------------------IDQ 50

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
           +   + +I  ++   +QY  +   + L+ N L D  P   L N   L  +FL  N +  +
Sbjct: 51  IIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVK-D 104

Query: 362 LQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLL 421
           L      + L  L + +N  I  +       LP+L  L +  N     I   +  + +L 
Sbjct: 105 LSSLKDLKKLKSLSLEHNG-ISDI-NGLVH-LPQLESLYLGNNKIT-DITV-LSRLTKLD 159

Query: 422 FLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI--FPKYMNLAKLVFLFLNDNQF 479
            L L  N  S D+    L     L+ + LS N     I        L  L  L L   + 
Sbjct: 160 TLSLEDNQIS-DIV--PLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQEC 212

Query: 480 TGRLEVGLLNASSLYVLDVSNNML 503
             +      N      +  ++  L
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSL 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 26/261 (9%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + +         +  +  +++  +  +  +       L  +  L +  N   +  +  LT
Sbjct: 33  VTDAVTQNELNSIDQIIANNSDIKSVQGIQ------YLPNVTKLFLNGNKLTD--IKPLT 84

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           +L +L  LFL  N   +       L +L+ L+ L L  N I+    + G+  L  L  L 
Sbjct: 85  NLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLY 137

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +  N+   +    LS LT L  L L  N++S    +  +A LT L+ L L  NH  +   
Sbjct: 138 LGNNKITDITV--LSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHISD--- 189

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLN-LRHCNISGTIPRFLQYQYDFRY 325
           L  LA    L+V +L   +   +         L V N +++ + S   P  +    D+  
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSN--LVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 326 IDLSDNNLVDTFPTWLLQNNT 346
            ++  +    T     +    
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQP 268

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 5e-19
 Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 26/255 (10%)

Query: 151 LTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN 210
           +           + F               +L    +T         +L ++ ++  N +
Sbjct: 1   MGETITVSTPIKQIF----PDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNS 53

Query: 211 EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
           +   +  Q +  L  +  L L+ NKL+    +  + NL +L +L L +N  ++   LS L
Sbjct: 54  DIKSV--QGIQYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENKIKD---LSSL 105

Query: 271 ANHSRLEVFQLSRLQVET-ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLS 329
            +  +L+   L    +        LP+  L+ L L +  I+      L        + L 
Sbjct: 106 KDLKKLKSLSLEHNGISDINGLVHLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLE 161

Query: 330 DNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENF 389
           DN + D  P   L   TKL+ ++L  N ++ +L+     +NL  L + +   + K   + 
Sbjct: 162 DNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 390 G--LILPELVYLDMS 402
              ++   +   D S
Sbjct: 218 SNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 44/260 (16%), Positives = 79/260 (30%), Gaps = 15/260 (5%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           I ++S     ++L  L L  N                L QL+ L +G N   +  + +L+
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGLV------HLPQLESLYLGNNKITD--ITVLS 150

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            LT L +L L+ N  S        L  L  L+ L LS N I+    ++ +  LKNL  L 
Sbjct: 151 RLTKLDTLSLEDNQIS----DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLE 203

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           +   E         SNL     +  +   L     +S   +               E   
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 267 LSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYI 326
           +            +      +     +   + +    ++    +GT     +      Y+
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYV 323

Query: 327 DLSDNNLVDTFPTWLLQNNT 346
                   +    W    + 
Sbjct: 324 FKGWYTEKNGGHEWNFNTDY 343

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 3e-10
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 44/261 (16%)

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
             E +  ++ + S   ++  +   +  +  +  ++++    +    +    ++  + L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNG 74

Query: 453 NYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIG 512
           N     I P   NL  L +LFL++N+    L   L +   L  L + +N +S        
Sbjct: 75  NKLT-DIKPLT-NLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-------- 122

Query: 513 KFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNN 572
             + L                 L  LE    L +  NK+   +   S  + L  L   +N
Sbjct: 123 DINGLV---------------HLPQLES---LYLGNNKITD-ITVLSRLTKLDTLSLEDN 163

Query: 573 SLSGTIPNALLQSSQLTTLDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPL 630
            +S  I   L   ++L  L L  N  S    +A L     NL  L L             
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQ 217

Query: 631 CHLRKLAIVDISYNTLNGPIP 651
            +L     V  +  +L  P  
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 7e-10
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 15/279 (5%)

Query: 439 LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498
             +       NL        +      L  +  +  N++     ++ G+    ++  L +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 72

Query: 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS 558
           + N L+   P  +    NL  L +  N  + D+S  L +L+  + L +  N +   +   
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISD-INGL 127

Query: 559 SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLR 618
            +   L  L+  NN ++     + L  ++L TL L DN+ S +I  L    + L+ L L 
Sbjct: 128 VHLPQLESLYLGNNKITDITVLSRL--TKLDTLSLEDNQIS-DIVPLAG-LTKLQNLYLS 183

Query: 619 GNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAE 678
            N++  ++   L  L+ L ++++          +  +N+ +     N   S ++  + ++
Sbjct: 184 KNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 679 DNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE 717
           D       V+          S+       +       + 
Sbjct: 242 DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
              +L   ++ D            ++ +   N+ +  ++Q      N+  L ++ N    
Sbjct: 24  IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGN---- 75

Query: 384 KLPENFGLI-LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
           KL +   L  L  L +L + +N  +  +   +  +++L  L L  N  S D+    L   
Sbjct: 76  KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DIN--GLVHL 130

Query: 443 VSLEFMNLSHNYFDGQI--FPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN 500
             LE + L +N    +I        L KL  L L DNQ +  +   L   + L  L +S 
Sbjct: 131 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 184

Query: 501 NMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSN 560
           N +S      +    NLDVL +             SNL V   +  ++  L  P   S +
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 561 HS 562
             
Sbjct: 243 GD 244

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 51/327 (15%), Positives = 98/327 (29%), Gaps = 89/327 (27%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
             A+ +   L     T    V     +S+  +  +N+ +             +       
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--------SVQGIQ------ 62

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQ 584
                     L N+     L ++ NKL   ++  +N  +L +LF   N +   + + L  
Sbjct: 63  ---------YLPNVTK---LFLNGNKLTD-IKPLTNLKNLGWLFLDENKIK-DLSS-LKD 107

Query: 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
             +L +L L  N  S +I  L++    L +L L  N +       L  L KL  + +  N
Sbjct: 108 LKKLKSLSLEHNGIS-DINGLVHL-PQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV 704
            +        ++I                                               
Sbjct: 164 QI--------SDIVPLAG------------------------------------------ 173

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
           L  +  L LS N ++ D+   +  L  +  L L +           SNL +  ++  +  
Sbjct: 174 LTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLS 791
            L    P  + +       NV ++   
Sbjct: 232 SL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 45/259 (17%)

Query: 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR 594
                     ++ +  +       +  +S+  +  +N+ +  ++   +     +T L L 
Sbjct: 17  DDAFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLN 73

Query: 595 DNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS 652
            N+ +    + +L     NL  L L  N ++ ++   L  L+KL  + + +N +      
Sbjct: 74  GNKLTDIKPLTNL----KNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI------ 121

Query: 653 CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKG-DVLKYMTGL 711
             ++I+                           ++E  ++  N+         L  +  L
Sbjct: 122 --SDIN---------------------GLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158

Query: 712 DLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771
            L  N+++ DI   +  L ++  L LS N +S  +  + + LK  + ++L   +   +  
Sbjct: 159 SLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPI 214

Query: 772 PELGELSFLAIFNVSYNNL 790
                L        +  +L
Sbjct: 215 NHQSNLVVPNTVKNTDGSL 233

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 16/190 (8%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           + K      +G +S           + SLT + L             G+    N++ L +
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANI----NVTDLTGIEYAHNIKDLTI 73

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
           +    T       I  L NL  L I   +        LS LT L +LD+S +    +  L
Sbjct: 74  NNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSIL 129

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF-QLKV 301
           + I  L  +  + L  N       +  L     L+   +    V   ++  +  F +L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQ 185

Query: 302 LNLRHCNISG 311
           L      I G
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 120 TSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEV 179
           T   +  L  + +   +  +  +  +    ++  L +     +        +  L NLE 
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN----YNPISGLSNLER 92

Query: 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN 239
           L + G  +T   I   +  L +L  L+I+ +  D  +   ++ L  +  +DLS N    +
Sbjct: 93  LRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 240 LPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS 282
             +  +  L  L+ L++  +   +      + +  +L      
Sbjct: 152 --IMPLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
              +  L +++     +           L  L+ L I         +P L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATNYNPIS------GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           +  ++  +       +  L  +  +DLS N     +    +  L  L  LNI  +     
Sbjct: 119 ISHSAHDD--SILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY 174

Query: 216 LPQCLSNLTYLRVLDLSSNKLSG 238
               + +   L  L   S  + G
Sbjct: 175 RG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 28/182 (15%), Positives = 71/182 (39%), Gaps = 13/182 (7%)

Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
            K  +   + ++    +    +++LTY   + L++  ++    L+ I    +++ L++ +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTY---ITLANINVTD---LTGIEYAHNIKDLTINN 75

Query: 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF-QLKVLNLRHCNISGTIPRFL 317
            H       + ++  S LE  ++    V ++  P L     L +L++ H     +I   +
Sbjct: 76  IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
                   IDLS N  +       L+   +L+ + +  + +     + +    L  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAF 189

Query: 378 NN 379
           + 
Sbjct: 190 SQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 27/185 (14%), Positives = 65/185 (35%), Gaps = 11/185 (5%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
                +   L  +       +     +SL  + ++N  ++      I    N+  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALL 583
                + +  +S L     L I    +    +   S  +SL  L   +++   +I   + 
Sbjct: 76  IHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643
              ++ ++DL  N    +I  L      L++L ++ + +  +    +    KL  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKT-LPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFS 190

Query: 644 NTLNG 648
            T+ G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 9/158 (5%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
            YI L++ N+ D      ++    ++ + + N   T    +     NL  L I       
Sbjct: 47  TYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVTS 102

Query: 384 KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV 443
               N    L  L  LD+S ++ + SI   +  + ++  +DLS N    D+    L +  
Sbjct: 103 DKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP 159

Query: 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG 481
            L+ +N+  +      +    +  KL  L+       G
Sbjct: 160 ELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
           L  +  L +   ++T D    +  L  +  L++S++    SI    + L    S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLS 791
                I P L  L  L   N+ ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 33/241 (13%), Positives = 73/241 (30%), Gaps = 61/241 (25%)

Query: 530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLT 589
           +V++  S  +      + ++     +  +   +SL Y+   N +++            + 
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSST-ANITEA-QMNSLTYITLANINVTDLTGIEYA--HNIK 69

Query: 590 TLDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647
            L + +   +    I+ L    SNL  L + G ++  +    L  L  L ++DIS++  +
Sbjct: 70  DLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 648 GPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707
             I +                                                    L  
Sbjct: 126 DSILTKINT------------------------------------------------LPK 137

Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
           +  +DLS N    DI   +  L E+ +LN+  + +         +      +      + 
Sbjct: 138 VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

Query: 768 G 768
           G
Sbjct: 195 G 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
              +  L +++   T +  + I  L  +  L +    ++     + S L     +D+S++
Sbjct: 65  AHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 765 KLNGQIPPELGELSFLAIFNVSYNNL 790
             +  I  ++  L  +   ++SYN  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
           +  +T + L++  +T D+ + I Y   I  L ++N   +   P   S L   E + +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797
            +     P L  L+ L + ++S++    ++  K
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 55/305 (18%), Positives = 94/305 (30%), Gaps = 25/305 (8%)

Query: 219 CLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
           C  N +  +    S+    G   + +     SLEYL    +   +    + +     L+ 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 279 FQLSRLQVETENFPWLPKF----QLKVLNLRHCNISGTIPRFLQYQY--DFRYIDLSDNN 332
             +   ++ +       +      L+ L L +  ++GT P  L      D   ++L + +
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 333 LVD------TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLP 386
                        WL      L I     + L  + +       L  L +S+N  +G+  
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQ--AHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 387 ENFGLI---LPELVYLDMSQNSFE---GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440
               L     P L  L +     E   G          +L  LDLS N+           
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 441 SCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN 500
               L  +NLS      Q+       AKL  L L+ N+         L    +  L +  
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKG 305

Query: 501 NMLSG 505
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 52/304 (17%), Positives = 90/304 (29%), Gaps = 26/304 (8%)

Query: 72  SAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILN 131
           S  + D     +     ++ L+   + L  L    +      +      S SLK+L +  
Sbjct: 18  SDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRA 77

Query: 132 IGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG-- 189
               S        +  ++ L  L L+    +             +L +L+L         
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 190 -SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS---VI 245
             L          L  L+I +        + +     L  LDLS N   G   L      
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 246 ANLTSLEYLSLFDNHFQ--ESFPLSVLANHSRLEVFQLS----RLQVETENFPWLPKFQL 299
               +L+ L+L +   +       ++ A   +L+   LS    R      +  W  +  L
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--L 255

Query: 300 KVLNLRHCNIS---GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
             LNL    +      +P  L        +DLS N L        L     +  + L  N
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLS------VLDLSYNRLDRNPSPDELPQ---VGNLSLKGN 306

Query: 357 FLTG 360
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 4e-15
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 22/247 (8%)

Query: 324 RYIDLSDNNLVDTFPTWLLQ--NNTKLEIMFLFNNFLTGNLQLP---NSKRNLPHLVISN 378
           + + +    +        L+    + L+ + L N  +TG    P    +  +L  L + N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 379 NSFIG---KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLP 435
            S+      L E    + P L  L ++Q          +     L  LDLS N    +  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 436 ---KHFLTSCVSLEFMNLSHNYF---DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGL-L 488
                      +L+ + L +       G          +L  L L+ N            
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG-DVSVQLSNLEVARILDIS 547
             S L  L++S   L  Q+P+ +   + L VL +S N  +      +L  +     L + 
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQV---GNLSLK 304

Query: 548 ENKLYGP 554
            N     
Sbjct: 305 GNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 9e-15
 Identities = 35/171 (20%), Positives = 53/171 (30%), Gaps = 15/171 (8%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT----SLTSLTSL 154
           L VL ++      +         R    L  L++  N        +         +L  L
Sbjct: 151 LKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 155 FLQGNSFSEGFKHNKGLV-NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD 213
            L+             L      L+ LDLS N +  +           L  LN++     
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
            +     + L    VLDLS N+L           L  +  LSL  N F +S
Sbjct: 267 QVPKGLPAKL---SVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 58/303 (19%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 114 ENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFS-EGFKHNKGLV 172
           + + Y   RSL+ L  L       +      +    SL  L ++              ++
Sbjct: 35  DVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL 92

Query: 173 NLRNLEVLDLSGNRITGSLIMQ-GICDLKNLVELNINENEFDGLLPQCLS----NLTYLR 227
            +  L+ L L    +TG+           +L  LN+    +                 L+
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 228 VLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE 287
           VL ++      N     +    +L  L L DN       L      S L   +   LQV 
Sbjct: 153 VLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLI-----SALCPLKFPTLQV- 205

Query: 288 TENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTK 347
                      L + N      SG        +   + +DLS N+L D          ++
Sbjct: 206 -----------LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 348 LEIMFLFNNFLTGNLQLP-NSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSF 406
           L  + L    L    Q+P      L  L +S N  + + P      LP++  L +  N F
Sbjct: 255 LNSLNLSFTGLK---QVPKGLPAKLSVLDLSYNR-LDRNP--SPDELPQVGNLSLKGNPF 308

Query: 407 EGS 409
             S
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 58/286 (20%), Positives = 94/286 (32%), Gaps = 31/286 (10%)

Query: 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNS 573
              +D         +   S+ L  L V     I    L+G L      S L+ L   N  
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRA-ARIPSRILFGALRVL-GISGLQELTLENLE 106

Query: 574 LSGTIPNALLQ--SSQLTTLDLRDNEFSGNIAHLIN----EDSNLRALLLRGNNLQGNIP 627
           ++GT P  LL+     L  L+LR+  ++   A L          L+ L +   +      
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRV 687
           E +     L+ +D+S N   G          L               L   +    +   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKF--------PTLQVLALRNAGMETPSG 218

Query: 688 EVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSI 746
               +A              + GLDLS N L     +    +  ++++LNLS   L    
Sbjct: 219 VCSALAAA---------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 747 PRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792
               + L     +DLSYN+L+    P   EL  +   ++  N    
Sbjct: 270 KGLPAKL---SVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 47/298 (15%), Positives = 86/298 (28%), Gaps = 45/298 (15%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKF---SNLDVLL 521
             +    L   D +        ++ + SL  L V    +  ++     +    S L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 522 MSRNSFEGDVSVQLSNLEVA--RILDISENKLYGPLEFSSN-----HSSLRYLFPHNNSL 574
           +      G     L         IL++          + +         L+ L       
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 575 SGTIPNALLQSSQLTTLDLRDNEFSGNI----AHLINEDSNLRALLLRGNNLQ---GNIP 627
                  +     L+TLDL DN   G      A    +   L+ L LR   ++   G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRV 687
                  +L  +D+S+N+L                                 + +   ++
Sbjct: 222 ALAAARVQLQGLDLSHNSLRD--------------------------AAGAPSCDWPSQL 255

Query: 688 EVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS 745
               ++    +     +   ++ LDLS N L    PS    L ++  L+L  N    S
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 40/255 (15%)

Query: 554 PLEFSSNHSSLRYLFPHNNSLSGTIPNA-LLQSSQLTTLDLRDNEFSGNIAHLINED--- 609
            +E      SL YL    ++ +       +++S  L  L +R       I          
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 610 SNLRALLLRGNNLQGNIPEPLC-----HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG 664
           S L+ L L    + G  P PL       L  L + ++S+ T +  +      +   ++  
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS 724
           +   +        E  R                          ++ LDLS N   G+   
Sbjct: 155 SIAQAHSL-NFSCEQVRV----------------------FPALSTLDLSDNPELGERGL 191

Query: 725 EI----GYLGEIHALNLSNNF---LSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE- 776
                      +  L L N      SG      +     + +DLS+N L         + 
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 777 LSFLAIFNVSYNNLS 791
            S L   N+S+  L 
Sbjct: 252 PSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 86  PIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL 145
            +I+    + F  L VL L +   E      +   +    QL+ L++ +NS  ++     
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPS 248

Query: 146 TS-LTSLTSLFLQGNSFSEGFK------------HNK-----GLVNLRNLEVLDLSGNRI 187
               + L SL L      +  K            +N+         L  +  L L GN  
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

Query: 188 TGS 190
             S
Sbjct: 309 LDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.6 bits (210), Expect = 3e-17
 Identities = 81/417 (19%), Positives = 139/417 (33%), Gaps = 65/417 (15%)

Query: 97  QELHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSFN----ESLVPLLTSLTS 150
            ++  LD+         W E         L+Q +++ +          + +   L    +
Sbjct: 3   LDIQSLDIQCEELSDARWAE-----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 151 LTSLFLQGNSFS-EGFKH-NKGL-VNLRNLEVLDLSGNRITG---SLIMQGICDLKNLVE 204
           L  L L+ N     G     +GL      ++ L L    +TG    ++   +  L  L E
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 205 LNINENEFDG-----LLPQCLSNLTYLRVLDLSSNKLS--GNLPL-SVIANLTSLEYLSL 256
           L++++N         L    L     L  L L    LS     PL SV+      + L++
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 257 FDNHFQESFPLSVLA-----NHSRLEVFQLSRLQVETENFPWLPKF-----QLKVLNLRH 306
            +N   E+  + VL      +  +LE  +L    V ++N   L         L+ L L  
Sbjct: 178 SNNDINEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 307 CNISGT-----IPRFLQYQYDFRYIDLSDNNLVDTFPTWL---LQNNTKLEIMFLFNN-- 356
             +         P  L      R + + +  +       L   L+    L+ + L  N  
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 357 ------FLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLIL---PELVYLDMSQNSF- 406
                  L   L  P  +  L  L + + SF      +F  +L     L+ L +S N   
Sbjct: 297 GDEGARLLCETLLEPGCQ--LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 407 -EGSIPPSMGYME---RLLFLDLSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYFD 456
             G      G  +    L  L L+  + S          L +  SL  ++LS+N   
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 91/516 (17%), Positives = 163/516 (31%), Gaps = 121/516 (23%)

Query: 149 TSLTSLFLQGNSFS-EGFKHNKGLVNLRNLEVLDLSGNRITG---SLIMQGICDLKNLVE 204
             + SL +Q    S   +     L  L+  +V+ L    +T      I   +     L E
Sbjct: 3   LDIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 205 LNINENEFDG-----LLPQCLSNLTYLRVLDLSSNKLS--GNLPL-SVIANLTSLEYLSL 256
           LN+  NE        +L    +    ++ L L +  L+  G   L S +  L +L+ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 257 FDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGT---- 312
            DN   ++  L +L                        P+ +L+ L L +C++S      
Sbjct: 121 SDNLLGDAG-LQLLCEGLL------------------DPQCRLEKLQLEYCSLSAASCEP 161

Query: 313 IPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLP 372
           +   L+ + DF+ + +S+N++ +     L Q                    L +S   L 
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQ-------------------GLKDSPCQLE 202

Query: 373 HLVISNNSFIGKLPENFGLIL---PELVYLDMSQNSF--EGSIPPSMGYME---RLLFLD 424
            L + +         +   I+     L  L +  N     G      G +    RL  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 425 LSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYF--DGQIFPKYMNLAKLVFLFLNDNQF 479
           +     +          L +  SL+ ++L+ N    +G         A+L+   L +   
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG---------ARLLCETLLEPG- 312

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535
                        L  L V +   +          + +   L  L +S N    D  V+ 
Sbjct: 313 -----------CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRE 360

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS----GTIPNALLQSSQLTTL 591
                     + +             S LR L+  +  +S     ++   LL +  L  L
Sbjct: 361 ----------LCQ-------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 592 DLRDNEFSGNIAHLINE-----DSNLRALLLRGNNL 622
           DL +N         + E        L  L+L     
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 77/481 (16%), Positives = 145/481 (30%), Gaps = 139/481 (28%)

Query: 200 KNLVELNINENEF-DGLLPQCLSNLTYLRVLDLSSNKLS--GNLPL-SVIANLTSLEYLS 255
            ++  L+I   E  D    + L  L   +V+ L    L+      + S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGT--- 312
           L  N   +   +  +             LQ         P  +++ L+L++C ++G    
Sbjct: 63  LRSNELGDVG-VHCVLQG----------LQT--------PSCKIQKLSLQNCCLTGAGCG 103

Query: 313 -IPRFLQYQYDFRYIDLSDNNLVDT----FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNS 367
            +   L+     + + LSDN L D         LL    +LE + L    L+       S
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-----AAS 158

Query: 368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGS----IPPSMGYME-RLLF 422
              L  ++ +                     L +S N    +    +   +     +L  
Sbjct: 159 CEPLASVLRAKPD---------------FKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 423 LDLSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF 479
           L L S   + D  +     + S  SL  + L  N                    L D   
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-------------------LGDVGM 244

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535
                  L  +S L  L +    ++ +    L R +    +L  L ++ N   GD   +L
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARL 303

Query: 536 SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595
                                                 L  T+        QL +L ++ 
Sbjct: 304 --------------------------------------LCETLLE---PGCQLESLWVKS 322

Query: 596 NEFSG----NIAHLINEDSNLRALLLRGNNLQGN--------IPEPLCHLRKLAIVDISY 643
             F+     + + ++ ++  L  L +  N L+          + +P   LR L    ++ 
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL---WLAD 379

Query: 644 N 644
            
Sbjct: 380 C 380

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 47/202 (23%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSFNE 139
           + G   +   L  P   L  L + +     +G  +       R+ + LK L++  N   +
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD--LCRVLRAKESLKELSLAGNELGD 298

Query: 140 SLVPLLTSL-----TSLTSLFLQGNSFS-EGFKH-NKGLVNLRNLEVLDLSGNRITGSLI 192
               LL          L SL+++  SF+     H +  L   R L  L +S NR+     
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAG 357

Query: 193 MQGICDL-----KNLVELNINENEFD----GLLPQCLSNLTYLRVLDLSSNKLSG----N 239
           ++ +C         L  L + + +        L   L     LR LDLS+N L       
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417

Query: 240 LPLSVIANLTSLEYLSLFDNHF 261
           L  SV      LE L L+D ++
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYW 439

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 5e-17
 Identities = 60/305 (19%), Positives = 97/305 (31%), Gaps = 54/305 (17%)

Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
               E   L G     ++ +   C +    EL +N       LP  L     + VL+++ 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQ 89

Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293
           N L  +LP        SLEYL   DN                                P 
Sbjct: 90  NALI-SLP----ELPASLEYLDACDNRLST---------------------------LPE 117

Query: 294 LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL 353
           LP   LK L++ +  ++  +P          YI+  +N L    P       T LE++ +
Sbjct: 118 LPA-SLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELP----TSLEVLSV 167

Query: 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLI---LPELVYLDMSQNSFEGSI 410
            NN LT    LP    +L  L +S N  +  LP             ++    +N     I
Sbjct: 168 RNNQLT---FLPELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 411 PPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLV 470
           P ++  ++    + L  N  S    +  L+   +    +    YF      +      L 
Sbjct: 223 PENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 471 FLFLN 475
                
Sbjct: 282 DAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 56/317 (17%), Positives = 114/317 (35%), Gaps = 32/317 (10%)

Query: 341 LLQNNTKLEIMFLFNNFLTGNL-QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYL 399
           L  NN        F N ++G      ++        +   +    +      ++ +   L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 400 DMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI 459
            +++ +   S+P ++    ++  L+++ N     LP+       SLE+++   N      
Sbjct: 65  QLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDACDNRL--ST 114

Query: 460 FPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDV 519
            P+    A L  L +++NQ T  L       + L  ++  NN L+  LP       +L+V
Sbjct: 115 LPE--LPASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT---SLEV 164

Query: 520 LLMSRNSFEGDVSVQLSNLEVARILDISENKL----YGPLEFSSNHSSLRYLFPHNNSLS 575
           L +  N     +     +LE    LD+S N L      P+    +  +  +     N ++
Sbjct: 165 LSVRNNQLT-FLPELPESLEA---LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 635
             IP  +L      T+ L DN  S  I   +++ +        G  +  ++ +   +   
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLH 277

Query: 636 LAIVDISYNTLNGPIPS 652
             + D           S
Sbjct: 278 RPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 56/310 (18%), Positives = 96/310 (30%), Gaps = 39/310 (12%)

Query: 362 LQLPNSKR-NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP-PSMGYMER 419
           + LP +   +L      N   I     ++     +     +   +   ++       + +
Sbjct: 3   IMLPINNNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 420 LLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF 479
              L L+  N S  LP +       L    ++ N       P+    A L +L   DN+ 
Sbjct: 61  FSELQLNRLNLS-SLPDNLPPQITVL---EITQNAL--ISLPE--LPASLEYLDACDNRL 112

Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLE 539
           +  L       +SL  LDV NN L+  LP        L+ +    N     +    ++LE
Sbjct: 113 S-TLPELP---ASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLE 163

Query: 540 VARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTT----LDLRD 595
           V   L +  N+L           SL  L    N L  ++P   +++            R+
Sbjct: 164 V---LSVRNNQLT---FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRE 216

Query: 596 NEFSGNIAHL---INEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS 652
           N     I H+   I        ++L  N L   I E L                +     
Sbjct: 217 N----RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 653 CFTNISLWME 662
             T      +
Sbjct: 273 QNTLHRPLAD 282

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 50/305 (16%), Positives = 89/305 (29%), Gaps = 85/305 (27%)

Query: 496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV----QLSNLEVARILDISENKL 551
            +   N +SG    +   +   +   +   +    VS+     ++       L ++   L
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE---LQLNRLNL 71

Query: 552 YG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDS 610
              P         +  L    N+L  ++P      + L  LD  DN     ++ L    +
Sbjct: 72  SSLPDNLPPQ---ITVLEITQNALI-SLPELP---ASLEYLDACDN----RLSTLPELPA 120

Query: 611 NLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNST 670
           +L+ L +  N L   +PE    L  +   +   N L                        
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT----------------------- 153

Query: 671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG 730
               LP                               +  L + +N+LT  +P     L 
Sbjct: 154 ---MLPEL--------------------------PTSLEVLSVRNNQLT-FLPELPESL- 182

Query: 731 EIHALNLSNNFLSGSIPRSFSNLKMTESM----DLSYNKLNGQIPPELGELSFLAIFNVS 786
              AL++S N L  S+P        +E          N++   IP  +  L       + 
Sbjct: 183 --EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 787 YNNLS 791
            N LS
Sbjct: 239 DNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 60/309 (19%), Positives = 98/309 (31%), Gaps = 70/309 (22%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
              K      N N+    L+  L+N      L ++   LS  LP  +     + VL +++
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS-SLPDNLPP--QITVLEITQ 89

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQ 584
           N+    +    ++LE    LD  +N+L          +SL++L   NN L+  +P     
Sbjct: 90  NALI-SLPELPASLEY---LDACDNRLS---TLPELPASLKHLDVDNNQLT-MLPELP-- 139

Query: 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
            + L  ++  +N     +  L    ++L  L +R N L   +PE    L  L   D+S N
Sbjct: 140 -ALLEYINADNN----QLTMLPELPTSLEVLSVRNNQLTF-LPELPESLEAL---DVSTN 190

Query: 645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV 704
            L                           +LPA   R                       
Sbjct: 191 LLE--------------------------SLPAVPVRNHHSE------------------ 206

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
            +         N +T  IP  I  L     + L +N LS  I  S S             
Sbjct: 207 -ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 765 KLNGQIPPE 773
             +     +
Sbjct: 265 YFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 5e-12
 Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 39/229 (17%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
             ++ VL+++ N           +       L+ L+   N  +     L     SL  L 
Sbjct: 79  PPQITVLEITQNALI--------SLPELPASLEYLDACDNRLST----LPELPASLKHLD 126

Query: 156 LQGNSFSE-----------GFKHNKGLVNL----RNLEVLDLSGNRITGSLIMQGICDLK 200
           +  N  +               +N+ L  L     +LEVL +  N++T  L        +
Sbjct: 127 VDNNQLTMLPELPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLT-FLPEL----PE 180

Query: 201 NLVELNINENEFDGL---LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
           +L  L+++ N  + L     +   +           N+++ ++P + I +L     + L 
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILE 238

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRH 306
           DN    S     L+  +    +   R+     +       +     +  
Sbjct: 239 DNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 8e-12
 Identities = 50/285 (17%), Positives = 86/285 (30%), Gaps = 56/285 (19%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
             +   L L+        +N          Q+ +L I  N+       L     SL  L 
Sbjct: 58  INQFSELQLNRLNLSSLPDN-------LPPQITVLEITQNALIS----LPELPASLEYLD 106

Query: 156 LQGNSFSEGFKHNKGL-VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG 214
              N  S        L     +L+ LD+  N++T  ++ +       L  +N + N+   
Sbjct: 107 ACDNRLST-------LPELPASLKHLDVDNNQLT--MLPELPA---LLEYINADNNQL-T 153

Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274
           +LP+  ++   L VL + +N+L+  LP        SLE L +  N               
Sbjct: 154 MLPELPTS---LEVLSVRNNQLTF-LP----ELPESLEALDVSTN--------------- 190

Query: 275 RLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
                 L  L           +        R   I+  IP  +        I L DN L 
Sbjct: 191 -----LLESLPAVPVRNHHSEE-TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
            +     L   T          + + +    N+        ++  
Sbjct: 244 -SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 1e-08
 Identities = 47/265 (17%), Positives = 77/265 (29%), Gaps = 87/265 (32%)

Query: 538 LEVARILDISENKLYG-----PLEFSSNHSSLRYLFP---HNNSLSGTIPNALLQSSQLT 589
           L +     +S+N  Y        ++ S             + N     +   L+   Q +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFS 62

Query: 590 TLDLRDNEFS---GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL 646
            L L     S    N+         +  L +  N L  ++PE    L  L   D   N L
Sbjct: 63  ELQLNRLNLSSLPDNLP------PQITVLEITQNALI-SLPELPASLEYL---DACDNRL 112

Query: 647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706
           +                           LP                              
Sbjct: 113 S--------------------------TLPEL--------------------------PA 120

Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
            +  LD+ +N+LT  +P     L     +N  NN L+  +P   ++L   E + +  N+L
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNNQL 172

Query: 767 NGQIPPELGELSFLAIFNVSYNNLS 791
              +P     L  L   +VS N L 
Sbjct: 173 T-FLPELPESLEAL---DVSTNLLE 193

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 33/259 (12%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI- 207
            +   L                     +LE +++S N +   +      +L  L E+ I 
Sbjct: 30  RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N    + P+   NL  L+ L +S+  +  +LP     +      L + DN    +   
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 268 SVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYID 327
           +     S                          +L L    I   I            ++
Sbjct: 147 NSFVGLSFE----------------------SVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK-RNLPHLVISNNSFIGKLP 386
           LSDNN ++  P  +    +   I+ +    +     LP+    NL  L   +   + KLP
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLKKLP 240

Query: 387 ENFGLILPELVYLDMSQNS 405
                 L  L+   ++  S
Sbjct: 241 TLEK--LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 48/282 (17%), Positives = 94/282 (33%), Gaps = 37/282 (13%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
           +  V     +++T   I   +   +N +EL     +   +     S    L  +++S N 
Sbjct: 10  SNRVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 236 LSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET-ENFPWL 294
           +   +   V +NL  L  + +   +           N   L+   +S   ++   +   +
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 295 PKFQLKVLNLRHCNISGTIPR--FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF 352
              Q  +L+++      TI R  F+   ++   + L+ N +               E+  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNL 184

Query: 353 LFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
             NN L                 + N+ F G             V LD+S+     S+P 
Sbjct: 185 SDNNNLE---------------ELPNDVFHG---------ASGPVILDISRTRIH-SLPS 219

Query: 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY 454
               +E L  L   S    + LP   L   V+L   +L++  
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPT--LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 21/244 (8%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I    F  F +L  +++S N      E   ++    L +++I     N+          +
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAFQN 102

Query: 148 LTSLTSLFLQGN---SFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDL-KNLV 203
           L +L  L +         +  K     ++     +LD+  N    ++       L    V
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHK-----IHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
            L +N+N    +     +      +    +N L   LP  V    +    L +       
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH- 215

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF-QLKVLNL---RHCNISGTIPRFLQY 319
           S P   L N  +L       L+      P L K   L   +L    HC       R +  
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYPSHCCAFANWRRQISE 271

Query: 320 QYDF 323
            +  
Sbjct: 272 LHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 37/259 (14%), Positives = 79/259 (30%), Gaps = 36/259 (13%)

Query: 392 ILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450
           +    + L          I          L  +++S N+    +     ++   L  + +
Sbjct: 28  LPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 451 SHN----YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ 506
                  Y + + F    NL  L +L +++       +V  +++    +LD+ +N+    
Sbjct: 87  EKANNLLYINPEAF---QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 507 LPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLR 565
           + R    F  L                         IL +++N +        +      
Sbjct: 144 IER--NSFVGLSFES--------------------VILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN 625
                NN+L     +    +S    LD+         ++ +    NL+ L  R       
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKK 238

Query: 626 IPEPLCHLRKLAIVDISYN 644
           +P  L  L  L    ++Y 
Sbjct: 239 LP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 38/235 (16%), Positives = 71/235 (30%), Gaps = 40/235 (17%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE---------FSG--NIAHLINEDS 610
            +   L      L      A      L  +++  N+         FS    +  +  E +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 611 N---------------LRALLLRGNNLQGNIPEPL-CHLRKLAIVDISYNTLNGPIPS-C 653
           N               L+ LL+    ++ ++P+    H  +  ++DI  N     I    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 654 FTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV---LKYMTG 710
           F  +S          + +   +        +Q  E+     N  E    DV         
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 711 LDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
           LD+S   +   +PS     L ++ A +  N      +P +   L       L+Y 
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
           +    L L  N+ S   +       L NL  L LS N +   +  +    + NL  L+++
Sbjct: 39  SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
            N    L     S+L  L VL L +N +   +  +   ++  L+ L L  N     FP+ 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 269 VLANHSRLEVFQLSRLQ------VETENFPWLPKFQLKVLNL 304
           ++ + ++L    L  L       +   +   LP +    L L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 33/173 (19%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLTSL 151
                 LH L LS N                +  L+ L++  N    +L   L + L +L
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSE----AFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQAL 114

Query: 152 TSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENE 211
             L L  N             ++  L+ L LS N+I+                       
Sbjct: 115 EVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQIS-----------------RFPVEL 155

Query: 212 FDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL--EYLSLFDNHFQ 262
                    + L  L +LDLSSNKL   LPL+ +  L +     L L +N  +
Sbjct: 156 IKD-----GNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 32/184 (17%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
             +DLS NNL      W     T L  + L +N L                 IS+ +F+ 
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---------------FISSEAFVP 86

Query: 384 KLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSC 442
                    +P L YLD+S N    ++   +   ++ L  L L +N+    + ++     
Sbjct: 87  ---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDM 135

Query: 443 VSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQFTG--RLEVGLLNASSLYVLD 497
             L+ + LS N    F  ++      L KL+ L L+ N+       ++  L A     L 
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 498 VSNN 501
           + NN
Sbjct: 196 LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 36/177 (20%)

Query: 280 QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPR-FLQYQYDFRYIDLSDNNLVDTFP 338
            LSRL+ E      L    L  L L H +++  I         + RY+DLS N+L  T  
Sbjct: 50  NLSRLRAEWT-PTRLTN--LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLD 104

Query: 339 TWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVY 398
            +L  +   LE++ L+NN +                V+  N+F           + +L  
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV---------------VVDRNAFED---------MAQLQK 140

Query: 399 LDMSQNSFEGSIPP----SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLS 451
           L +SQN      P         + +L+ LDLSSN   + LP   L    +     L 
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 38/184 (20%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMNLAKLVFLFLNDNQF 479
           LDLS NN SR   +   T   +L  + LSHN   +   + F   + +  L +L L+ N  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF---VPVPNLRYLDLSSNHL 100

Query: 480 TGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL 538
              L+  L  +  +L VL + NN +   +                RN+FE      ++ L
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNNHIV-VVD---------------RNAFED-----MAQL 138

Query: 539 EVARILDISENKL----YGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLD 592
              + L +S+N++       ++  +    L  L   +N L       L  L +     L 
Sbjct: 139 ---QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 593 LRDN 596
           L +N
Sbjct: 196 LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 23/162 (14%)

Query: 495 VLDVSNNMLSGQLPRWI-GKFSNLDVLLMSRN---SFEGDVSVQLSNLEVARILDISENK 550
           +LD+S+N LS     W   + +NL  LL+S N       +  V + NL   R LD+S N 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL---RYLDLSSNH 99

Query: 551 LY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-SQLTTLDLRDNEFS-------G 600
           L+      FS    +L  L  +NN +   +     +  +QL  L L  N+ S        
Sbjct: 100 LHTLDEFLFSDL-QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 601 NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642
           +   L      L  L L  N L+      L  L       + 
Sbjct: 158 DGNKL----PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 705 LKYMTGLDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLS 762
           +  +  LDLSSN L   +   +   L  +  L L NN +   + R +F ++   + + LS
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 763 YNKLNGQIPPE----LGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYR-----GNPY 813
            N+++ + P E      +L  L + ++S N L   +P                    NP 
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLP-LTDLQKLPAWVKNGLYLHNNPL 201

Query: 814 LC 815
            C
Sbjct: 202 EC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 542 RILDISENKLY--GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS 599
            +LD+S N L         +  ++L  L   +N L+     A +    L  LDL  N   
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL 646
                L ++   L  LLL  N++          + +L  + +S N +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 26/209 (12%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
                  +L           K       L  ++  N   ++     +  +   T+L  L 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK------ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           L  N  S+       L +L  LE L ++ NR+     + GI     L  L ++ NE    
Sbjct: 70  LSHNQISDL----SPLKDLTKLEELSVNRNRLK---NLNGI-PSACLSRLFLDNNELRDT 121

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
               L +L  L +L + +NKL     + ++  L+ LE L L  N          L    +
Sbjct: 122 DS--LIHLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITN---TGGLTRLKK 173

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNL 304
           +    L+  +   E   + P+  L + N 
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPE--LYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 25/211 (11%)

Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
               L N    +L    +T    +    +L  +   N + +    L    +   T L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68

Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET- 288
            LS N++S    LS + +LT LE LS+  N  +    +        L    L   ++   
Sbjct: 69  HLSHNQISD---LSPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRDT 121

Query: 289 ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKL 348
           ++   L    L++L++R+  +  +I   L +      +DL  N + +T     L    K+
Sbjct: 122 DSLIHLKN--LEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG---LTRLKKV 174

Query: 349 EIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
             + L               +  P L I+N 
Sbjct: 175 NWIDLTGQKCV-----NEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 19/173 (10%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           I +++    F  L  L LS N+       K       L +L+ L++  N   ++L  +  
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDLSPLK------DLTKLEELSVNRNRL-KNLNGI-- 103

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
               L+ LFL  N   +       L++L+NLE+L +  N++     +  +  L  L  L+
Sbjct: 104 PSACLSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKLKS---IVMLGFLSKLEVLD 156

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           ++ NE        L+ L  +  +DL+  K   N P+     L     +   D 
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 37/238 (15%), Positives = 83/238 (34%), Gaps = 26/238 (10%)

Query: 220 LSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF 279
              L      +L    ++    L     L+ ++  +  +++ Q    L+ +   + L+  
Sbjct: 15  DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKEL 68

Query: 280 QLSRLQVET-ENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFP 338
            LS  Q+        L K  L+ L++    +                + L +N L DT  
Sbjct: 69  HLSHNQISDLSPLKDLTK--LEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTDS 123

Query: 339 TWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN--SFIGKLPENFGLILPEL 396
              L +   LEI+ + NN L  ++ +      L  L +  N  +  G L       L ++
Sbjct: 124 ---LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTR-----LKKV 174

Query: 397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY 454
            ++D++       +   + Y   L   +   +   R +  +++++  S     +    
Sbjct: 175 NWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524
            LA  V   L     T    V     S +   +  N+ +       +  F+NL  L +S 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQ 584
           N    D+S  L +L     L ++ N+L   L    + + L  LF  NN L  T    L+ 
Sbjct: 73  NQIS-DLS-PLKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDTDS--LIH 126

Query: 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644
              L  L +R+N+   +I  L    S L  L L GN +  N    L  L+K+  +D++  
Sbjct: 127 LKNLEILSIRNNKLK-SIVMLGFL-SKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQ 182

Query: 645 TLNGPIPSCFTNISL 659
                       + +
Sbjct: 183 KCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 41/212 (19%)

Query: 242 LSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKV 301
           +     L +    +L      +      L+                           ++ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQKELSG--------------------------VQN 45

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
            N  + NI       +Q+  + + + LS N + D  P   L++ TKLE + +  N L   
Sbjct: 46  FNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNL 100

Query: 362 LQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLL 421
             +P++   L  L + NN  +          L  L  L +  N  + SI   +G++ +L 
Sbjct: 101 NGIPSA--CLSRLFLDNNE-LRDTDSLIH--LKNLEILSIRNNKLK-SIVM-LGFLSKLE 153

Query: 422 FLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453
            LDL  N  +       LT    + +++L+  
Sbjct: 154 VLDLHGNEITN---TGGLTRLKKVNWIDLTGQ 182

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 134 YNSFN--ESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSL 191
           +      E +   L++L +   L L  N+  +       L  + NL +L L  N I    
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEK----ISSLSGMENLRILSLGRNLIK--- 83

Query: 192 IMQGICDL-KNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS 250
            ++ +  +   L EL I+ N+   L    +  L  LRVL +S+NK++    +  +A L  
Sbjct: 84  KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 251 LEYLSLFDNHFQESFPLSVLANHSRLEV-FQLSRLQV 286
           LE L L  N     +  +   +  R+EV  +L  L+ 
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 14/149 (9%)

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
             T    + L         K +  L  L+  + L LS N I     +  +  ++NL  L+
Sbjct: 21  VATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILS 76

Query: 207 INEN---EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
           +  N   + + L     +    L  L +S N+++    LS I  L +L  L + +N    
Sbjct: 77  LGRNLIKKIENLD----AVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITN 129

Query: 264 SFPLSVLANHSRLEVFQLSRLQVETENFP 292
              +  LA   +LE   L+   +  +   
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 96  FQELHVLDLSDNRF---EGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT 152
            +    L LS N                   ++ L+IL++G N   + +  L     +L 
Sbjct: 47  LKACKHLALSTNNIEKISSLS---------GMENLRILSLGRNLI-KKIENLDAVADTLE 96

Query: 153 SLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
            L++  N  +       G+  L NL VL +S N+IT    +  +  L  L +L +  N  
Sbjct: 97  ELWISYNQIA----SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 213 DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
                +  +   Y                  V+  L +L+ L
Sbjct: 153 YNDYKENNATSEYRI---------------EVVKRLPNLKKL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 20/180 (11%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG 158
             +L LS+N    +       T     +L  LN+       + + +  +L  L +L L  
Sbjct: 33  TTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSH 86

Query: 159 N---SFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDG 214
           N   S     +       L  L VLD+S NR+T   +  G    L  L EL +  NE   
Sbjct: 87  NQLQSLPLLGQ------TLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKT 138

Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274
           L P  L+    L  L L++N L+  LP  ++  L +L+ L L +N    + P     +H 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
            +++  +P+  L  L+L                  +L  L  L++ +N   +SL  L  +
Sbjct: 46  FSLATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQT 98

Query: 148 LTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNL 202
           L +LT L +  N   S   G  +       L  L+ L L GN +    +  G+      L
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRG------LGELQELYLKGNELKT--LPPGLLTPTPKL 150

Query: 203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
            +L++  N    L    L+ L  L  L L  N L   +P     +   L +  L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 45/179 (25%), Positives = 57/179 (31%), Gaps = 14/179 (7%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
           L LS N          L     L  +NL               L  L  L L+ NQ    
Sbjct: 36  LHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWI-GKFSNLDVLLMSRN---SFEGDVSVQLSNL 538
           L +      +L VLDVS N L+  LP         L  L +  N   +    +      L
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 539 EVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN 596
                L ++ N L   P    +   +L  L    NSL  TIP     S  L    L  N
Sbjct: 151 ---EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 37/204 (18%)

Query: 327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLP----NSKRNLPHLVISNNSFI 382
           +    NL    P  L ++ T L    L  N L                L  L +     +
Sbjct: 16  NCDKRNL-TALPPDLPKDTTIL---HLSENLLY---TFSLATLMPYTRLTQLNLDRAE-L 67

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
            KL  +  L  P L  LD+S N  + S+P     +  L  LD+S N  +  LP   L   
Sbjct: 68  TKLQVDGTL--PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGL 123

Query: 443 VSLEFMNLSHN--------YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA-SSL 493
             L+ + L  N                      KL  L L +N  T  L  GLLN   +L
Sbjct: 124 GELQELYLKGNELKTLPPGLLTP--------TPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 494 YVLDVSNNMLSGQLPRWIGKFSNL 517
             L +  N L   +P+  G F + 
Sbjct: 175 DTLLLQENSLYT-IPK--GFFGSH 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 15/192 (7%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
           + + LDLS N +   L          L  L+++  E   +      +L++L  L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 236 LSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET----ENF 291
           +  +L L   + L+SL+ L   + +   S     + +   L+   ++   +++    E F
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 292 PWLPKFQLKVLNLRHCNIS----GTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTK 347
             L    L+ L+L    I       +    Q       +DLS N + +       +   +
Sbjct: 146 SNLT--NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIR 201

Query: 348 LEIMFLFNNFLT 359
           L+ + L  N L 
Sbjct: 202 LKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 7e-13
 Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 25/200 (12%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLTSL 151
           F  F EL VLDLS    +  E+       +SL  L  L +  N   +SL     + L+SL
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSL 102

Query: 152 TSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELN 206
             L        S       H      L+ L+ L+++ N I  S  +      L NL  L+
Sbjct: 103 QKLVAVETNLASLENFPIGH------LKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLD 155

Query: 207 INENEFDGLLPQCLSNLTYLRV----LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
           ++ N+   +    L  L  + +    LDLS N ++  +       +  L+ L+L  N  +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLKELALDTNQLK 213

Query: 263 ESFPLSVLANHSRLEVFQLS 282
            S P  +    + L+   L 
Sbjct: 214 -SVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 88  INMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTS 147
           I    +     L  L L+ N  +    + A      L  L+ L     +        +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 148 LTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL----V 203
           L +L  L +  N     FK  +   NL NLE LDLS N+I  S+    +  L  +    +
Sbjct: 123 LKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
            L+++ N  + + P     +  L+ L L +N+L  ++P  +   LTSL+ + L  N + 
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 61/263 (23%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +   L+++ N    L      +   L+VLDLS  ++   +      +L+ L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 86

Query: 261 FQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ 320
                               +  L +    F  L    L+ L     N++          
Sbjct: 87  -------------------PIQSLALGA--FSGLSS--LQKLVAVETNLA---------- 113

Query: 321 YDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLP---HLVIS 377
                          +   + + +   L+ + + +N +  + +LP    NL    HL +S
Sbjct: 114 ---------------SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLS 157

Query: 378 NNSFIGKLPENFGLILPELVY----LDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRD 433
           +N  I  +      +L ++      LD+S N     I P      RL  L L +N     
Sbjct: 158 SNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS- 214

Query: 434 LPKHFLTSCVSLEFMNLSHNYFD 456
           +P        SL+ + L  N +D
Sbjct: 215 VPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 46/258 (17%), Positives = 79/258 (30%), Gaps = 58/258 (22%)

Query: 346 TKLEIMFLFNNFLTGNLQLPN----SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDM 401
              + + L  N L     L +    S   L  L +S    I  + +     L  L  L +
Sbjct: 28  FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLIL 83

Query: 402 SQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIF 460
           + N  + S+       +  L  L     N +  L    +    +L+ +N++HN       
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 461 PKY-MNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDV 519
           P+Y  NL  L  L L+ N+                            +         L  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-------------------------SIYC--TDLRVLHQ 174

Query: 520 LLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579
           +              L NL     LD+S N +      +     L+ L    N L  ++P
Sbjct: 175 M-------------PLLNLS----LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVP 216

Query: 580 NALLQS-SQLTTLDLRDN 596
           + +    + L  + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 53/220 (24%), Positives = 79/220 (35%), Gaps = 30/220 (13%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS----GNIAHLINEDSNLRALLL 617
            S + L    N L      +     +L  LDL   E      G    L    S+L  L+L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL----SHLSTLIL 83

Query: 618 RGNNLQ---GNIPEPLCHLRKLAIVDISYNTL-NGPIPSCFTNISLWMEKGNYYNSTLSL 673
            GN +Q         L  L+KL  V+ +  +L N PI    T   L +     +N   S 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV----AHNLIQSF 139

Query: 674 ALP-AEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT-------GLDLSSNELTGDIPSE 725
            LP    N  + + +    ++ N+ +S     L+ +         LDLS N +   I   
Sbjct: 140 KLPEYFSNLTNLEHL---DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 726 IGYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYN 764
                 +  L L  N L  S+P   F  L   + + L  N
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 36/226 (15%)

Query: 99  LHVLDLSDNRF---------EGWEENKAYNTSRSLKQLKILNIGYNSFNE----SLVPLL 145
           L  L L +N              +E      +++   L+ +  G N              
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 146 TSLTSLTSLFLQGNSF-SEGFKH--NKGLVNLRNLEVLDLSGNRIT---GSLIMQGICDL 199
            S   L ++ +  N    EG +H   +GL   + L+VLDL  N  T    S +   +   
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 200 KNLVELNINENEF--DGLLP-----QCLSNLTYLRVLDLSSNKLSGN----LPLSVIANL 248
            NL EL +N+      G          L N+  L+ L L  N++  +    L   +   +
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 249 TSLEYLSLFDNHFQESFPL-----SVLANHSRLEVFQLSRLQVETE 289
             L +L L  N F E   +      V +   R E+ +L  ++  T+
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 47/313 (15%), Positives = 86/313 (27%), Gaps = 54/313 (17%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTS-RSLKQLKILNIGYNSFN----ESLVPLLTSLTSLTS 153
           +    L  +     E+ K+          +K + +  N+        L   + S   L  
Sbjct: 6   IEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 154 LFLQGNSFS-------EGFKH-NKGLVNLRNLEVLDLSGNRIT---GSLIMQGICDLKNL 202
                           E  +   + L+    L  + LS N         ++  +     L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 203 VELNINENEF-------------DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA--- 246
             L ++ N               +  + +   N   LR +    N+L  N  +   A   
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTF 183

Query: 247 -NLTSLEYLSLFDNHFQ----ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKF---- 297
            +   L  + +  N  +    E   L  LA    L+V  L            L       
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 298 -QLKVLNLRHCNISGT----IPRFLQYQY--DFRYIDLSDNNL----VDTFPTWLLQNNT 346
             L+ L L  C +S      +            + + L  N +    V T  T + +   
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 347 KLEIMFLFNNFLT 359
            L  + L  N  +
Sbjct: 304 DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 49/335 (14%), Positives = 94/335 (28%), Gaps = 75/335 (22%)

Query: 175 RNLEVLDLSGNRITG---SLIMQGICDLKNLVELNINENEF--DG--LLPQCLSNLTYLR 227
            ++E   L  + IT      +   + +  ++ E+ ++ N    +    L + +++   L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 228 VLDLSSNKLSGNLP---------LSVIANLTSLEYLSLFDNHFQESFPL---SVLANHSR 275
           + + S                  L  +     L  + L DN F  +        L+ H+ 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 276 LEVFQLSR--------------LQVETENFPWLPKFQLKVLNLRHCNISG----TIPRFL 317
           LE   L                LQ    N        L+ +      +         +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 318 QYQYDFRYIDLSDNNL----VDTFPTWLLQNNTKLEIMFLFNNFLT--GNLQLPNSKRNL 371
           Q       + +  N +    ++      L    +L+++ L +N  T  G+  L       
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----- 238

Query: 372 PHLVISNNSFIGKLPENFGLILPELVYLDMSQNSF--EGSIP----PSMGYMERLLFLDL 425
               + +               P L  L ++       G+       S      L  L L
Sbjct: 239 ---ALKSW--------------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 426 SSNNFSRD----LPKHFLTSCVSLEFMNLSHNYFD 456
             N    D    L          L F+ L+ N F 
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 50/262 (19%), Positives = 83/262 (31%), Gaps = 48/262 (18%)

Query: 423 LDLSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYF--DGQIFPKYM--------NLAKL 469
           + LS N    +  +     + S   LE    S  +        P+ +           KL
Sbjct: 37  IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96

Query: 470 VFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
             + L+DN F       L   L   + L  L + NN L  Q    I +      L     
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-----ALQELAV 151

Query: 526 SFEGDVSVQLSNLEVARILDISENKLY--GPLEFSS---NHSSLRYLFPHNNSL-----S 575
           + +   +  L      R +    N+L      E++    +H  L  +    N +      
Sbjct: 152 NKKAKNAPPL------RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 576 GTIPNALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGN----IP 627
             +   L    +L  LDL+DN F+      +A  +    NLR L L    L       + 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 628 EPL--CHLRKLAIVDISYNTLN 647
           +         L  + + YN + 
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 60/336 (17%), Positives = 103/336 (30%), Gaps = 71/336 (21%)

Query: 220 LSNLTYLRVLDLSSNKLS--GNLPL-SVIANLTSLEYLSLFDNHF--QESFPLS-VLANH 273
           ++  + +    L  + ++      + +V+    S++ + L  N    + +  LS  +A+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 274 SRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
             LE+ + S +             +L +  L  C                  + LSDN  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-------------LHTVRLSDNAF 106

Query: 334 VDTFPTWL---LQNNTKLEIMFLFNN------------FLTGNLQLPNSKRN--LPHLVI 376
             T    L   L  +T LE ++L NN             L        +K    L  ++ 
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 377 SNNSF-------IGK-LPENFGLILPELVYLDMSQNSF-----EGSIPPSMGYMERLLFL 423
             N           K    +       L  + M QN       E  +   + Y + L  L
Sbjct: 167 GRNRLENGSMKEWAKTFQSH-----RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 424 DLSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYFD-------GQIFPKYMNLAKLVFLF 473
           DL  N F+          L S  +L  + L+               F K  N+  L  L 
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLR 280

Query: 474 LNDNQFTGRLEVGLLNA-----SSLYVLDVSNNMLS 504
           L  N+        L          L  L+++ N  S
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 60/362 (16%), Positives = 111/362 (30%), Gaps = 90/362 (24%)

Query: 299 LKVLNLRHCNISG----TIPRFLQYQYDFRYIDLSDNNLVDTFPTWL---LQNNTKLEIM 351
           ++  +L+   I+     ++   L      + I LS N +      WL   + +   LEI 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 352 FLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP 411
              + F                          ++PE   L+L  L      +        
Sbjct: 66  EFSDIFT--------------------GRVKDEIPEALRLLLQAL-----LKCP------ 94

Query: 412 PSMGYMERLLFLDLSSNNFSRDLPKHF---LTSCVSLEFMNLSHNYF--DGQIFPKYMNL 466
                  +L  + LS N F     +     L+    LE + L +N               
Sbjct: 95  -------KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA--------- 138

Query: 467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLM 522
              +   L +     + +    NA  L  +    N L         +       L  + M
Sbjct: 139 GAKIARALQELAVNKKAK----NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 523 SRNSFEGDVSVQ------LSNLEVARILDISENKL--YGPLEFSS---NHSSLRYLFPHN 571
            +N       ++      L+  +  ++LD+ +N     G    +    +  +LR L  ++
Sbjct: 195 VQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 572 NSLSGT----IPNAL--LQSSQLTTLDLRDNEFSGNIAHLINE-----DSNLRALLLRGN 620
             LS      + +A   L++  L TL L+ NE   +    +         +L  L L GN
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 621 NL 622
             
Sbjct: 314 RF 315

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 145 LTSLTSLTSLFLQGNSFS--EGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL 202
            T+      L L+G      E          L   + +D S N I     + G   L+ L
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGAT-----LDQFDAIDFSDNEIR---KLDGFPLLRRL 66

Query: 203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
             L +N N    +       L  L  L L++N L     L  +A+L SL YL +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 92  LFVPFQELHVLDLSDN---RFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSL 148
           L     +   +D SDN   + +G+           L++LK L +  N        L  +L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKLDGFP---------LLRRLKTLLVNNNRICRIGEGLDQAL 87

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT 188
             LT L L  NS  E       L +L++L  L +  N +T
Sbjct: 88  PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 32/139 (23%)

Query: 220 LSNLTYLRVLDLSSNKLS--GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLE 277
            +N    R LDL   K+    NL     A L   + +   DN                  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG----ATLDQFDAIDFSDN------------------ 52

Query: 278 VFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337
             ++ +L    + FP L +  LK L + +  I        Q   D   + L++N+LV+  
Sbjct: 53  --EIRKL----DGFPLLRR--LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 338 PTWLLQNNTKLEIMFLFNN 356
               L +   L  + +  N
Sbjct: 105 DLDPLASLKSLTYLCILRN 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
                L L  N F+   +       L  L  ++ S N+IT   I +G  +    + E+ +
Sbjct: 32  QYTAELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILL 88

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N  + +  +    L  L+ L L SN+++  +       L+S+  LSL+DN    +   
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

Query: 268 SVLANHSRLEVFQL 281
                   L    L
Sbjct: 147 GAFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 128 KILNIGYNSFNE-SLVPLLTSLTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDL 182
             L +  N F       +   L  L  +    N      EG F+          +  + L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG------ASGVNEILL 88

Query: 183 SGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLP 241
           + NR+    +   +   L++L  L +  N    +       L+ +R+L L  N+++  + 
Sbjct: 89  TSNRLEN--VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 242 LSVIANLTSLEYLSLFDNHFQ 262
                 L SL  L+L  N F 
Sbjct: 146 PGAFDTLHSLSTLNLLANPFN 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
            ++T + L+ N+              + L  +DLS N+I+   +       L++L  L +
Sbjct: 32  ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVL 87

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N+   L       L  L++L L++NK++  L +    +L +L  LSL+DN  Q +   
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 268 SVLANHSRLEVFQL 281
              +    ++   L
Sbjct: 146 GTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 33/181 (18%), Positives = 50/181 (27%), Gaps = 51/181 (28%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
            +  + L  N I   +        K L  ++++ N+   L P     L  L  L L  NK
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 236 LSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLP 295
           ++  LP S+   L SL+ L L  N       +    +        L  L           
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD--------LHNLN---------- 131

Query: 296 KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFN 355
                                         + L DN L  T           ++ M L  
Sbjct: 132 -----------------------------LLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQ 161

Query: 356 N 356
           N
Sbjct: 162 N 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 24/141 (17%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLTSL 151
           F P+++L  +DLS+N+      +      + L+ L  L +  N     L   L   L SL
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSL 106

Query: 152 TSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELN 206
             L L  N         F+      +L NL +L L  N++    I +G    L+ +  ++
Sbjct: 107 QLLLLNANKINCLRVDAFQ------DLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMH 158

Query: 207 INENEFDGLLPQCLSNLTYLR 227
           + +N F      C  +L +L 
Sbjct: 159 LAQNPFI-----CDCHLKWLA 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDL 182
            K L++  N  +         LT L  L+L  N   +   G FK       L+NLE L +
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE------LKNLETLWV 92

Query: 183 SGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLP 241
           + N++    +  G+ D L NL EL ++ N+   L P+   +LT L  L L  N+L  +LP
Sbjct: 93  TDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 242 LSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ 285
             V   LTSL+ L L++N  +   P       + L+  +L   Q
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 22/174 (12%)

Query: 93  FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP--LLTSLTS 150
           F    +L +L L+DN+ +           + LK L+ L +  N      +P  +   L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKLQA--LPIGVFDQLVN 110

Query: 151 LTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVEL 205
           L  L L  N   S     F       +L  L  L L  N +    + +G+ D L +L EL
Sbjct: 111 LAELRLDRNQLKSLPPRVFD------SLTKLTYLSLGYNELQS--LPKGVFDKLTSLKEL 162

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
            +  N+   +       LT L+ L L +N+L   +P     +L  L+ L L +N
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 13/171 (7%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
                L LQ N  S     +K    L  L +L L+ N++    +  GI   LKNL  L +
Sbjct: 37  ADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWV 92

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
            +N+   L       L  L  L L  N+L  +LP  V  +LT L YLSL  N  Q S P 
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 268 SVLANHSRLEVFQLS--RLQ-VETENFPWLPKFQLKVLNLRHCNISGTIPR 315
            V    + L+  +L   +L+ V    F  L   +LK L L +  +   +P 
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLT--ELKTLKLDNNQLK-RVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 28/172 (16%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +  +L++  N+   L  +    LT LR+L L+ NKL   LP  +   L +LE L + DN 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 261 FQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK--F----QLKVLNLRHCNISGTIP 314
            Q + P+ V      L   +L R Q+++     LP   F    +L  L+L +  +  ++P
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKS-----LPPRVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 315 R--F-----LQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLT 359
           +  F     L+       + L +N L    P       T+L+ + L NN L 
Sbjct: 150 KGVFDKLTSLK------ELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 46/188 (24%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY--------FDGQIFPKYMNLAKLVFLFL 474
           LDL SN  S    K F      L  + L+ N         F          L  L  L++
Sbjct: 42  LDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKLQTLPAGIFKE--------LKNLETLWV 92

Query: 475 NDNQFTGRLEVGLLNA-SSLYVLDVSNNMLSGQLPRWI-GKFSNLDVLLMSRN---SFEG 529
            DN+    L +G+ +   +L  L +  N L   LP  +    + L  L +  N   S   
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 530 DVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQL 588
            V  +L++L+    L +  N+L   P       + L+ L   NN L      A     +L
Sbjct: 151 GVFDKLTSLK---ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 589 TTLDLRDN 596
             L L++N
Sbjct: 208 KMLQLQEN 215

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           + + +  L L  +  +EG K          LE L      +T    +  +  L  L +L 
Sbjct: 15  TPSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLE 70

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           +++N   G L         L  L+LS NK+     +  +  L +L+ L LF+ 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
                L   F+EL  L   +            N  + L +LK L +  N  +  L  L  
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLTSIA-----NLPK-LNKLKKLELSDNRVSGGLEVLAE 85

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT 188
              +LT L L GN   +     + L  L NL+ LDL    +T
Sbjct: 86  KCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET-ENFPWLPKFQLKVLNLR 305
             + ++ L L ++   E     +      LE      + + +  N P L K  LK L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK--LKKLELS 72

Query: 306 HCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNN 356
              +SG +    +   +  +++LS N + D      L+    L+ + LFN 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 13/146 (8%)

Query: 123 SLKQLKILNIGYNSFNESLV-----PLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL 177
           +LK +  +   Y     S        L      +  L L     +        L  L  +
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL----CHLEQLLLV 465

Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
             LDLS NR+    +   +  L+ L  L  ++N  + +    ++NL  L+ L L +N+L 
Sbjct: 466 THLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521

Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQE 263
            +  +  + +   L  L+L  N   +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 17/138 (12%)

Query: 95  PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSL 154
            + ++ VL L+          +       L  +  L++ +N    +L P L +L  L  L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLE------QLLLVTHLDLSHNRL-RALPPALAALRCLEVL 491

Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN---- 210
               N+     ++  G+ NL  L+ L L  NR+  S  +Q +     LV LN+  N    
Sbjct: 492 QASDNAL----ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

Query: 211 --EFDGLLPQCLSNLTYL 226
                  L + L +++ +
Sbjct: 548 EEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 36/280 (12%)

Query: 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNS 573
             +L    ++    +    V  +  +  +   + +++       S+    L         
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633
            +  + + L    +L  L+        N   L+     +RAL     +      E L + 
Sbjct: 361 ST-VLQSELESCKELQELEPE------NKWCLLTIILLMRAL-----DPLLYEKETLQYF 408

Query: 634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693
             L  VD         + S F   +  ++        L LA                   
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA------------------- 449

Query: 694 KNRYESYKG-DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSN 752
                     + L  +T LDLS N L   +P  +  L  +  L  S+N L  ++    +N
Sbjct: 450 HKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 753 LKMTESMDLSYNKLNG-QIPPELGELSFLAIFNVSYNNLS 791
           L   + + L  N+L        L     L + N+  N+L 
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 50/312 (16%), Positives = 97/312 (31%), Gaps = 18/312 (5%)

Query: 172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
           V+     +       +T    M  +  + +   L++     DG        L  L    L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLE--VFQLSRLQVETE 289
           +         +    + +  E + L D         +      R E  V + + LQ E E
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE 369

Query: 290 NFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLE 349
           +   L +  L+  N         + R L      +      + L    P      +    
Sbjct: 370 SCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL-R 426

Query: 350 IMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGS 409
             FL  N +           +L H  ++    + +L          + +LD+S N    +
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--------VTHLDLSHNRLR-A 477

Query: 410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG-QIFPKYMNLAK 468
           +PP++  +  L  L  S N    ++    + +   L+ + L +N           ++  +
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 469 LVFLFLNDNQFT 480
           LV L L  N   
Sbjct: 535 LVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 52/356 (14%), Positives = 95/356 (26%), Gaps = 19/356 (5%)

Query: 217 PQCLSNLTYLR-VLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           P   S   Y R +L  +                      S           L ++ + + 
Sbjct: 223 PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAP 282

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
           L V   +       +  WL       LN +    +             +   L  +    
Sbjct: 283 LSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT--FRVIWTGSDSQKECVLLKDRPEC 340

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
                    + +L    L     T       S + L  L   N   +  +     L++  
Sbjct: 341 WCR--DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII----LLMRA 394

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
           L  L   + + +           R  +LD   + F  +           +  ++L+H   
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-KMEYADVRVLHLAHKDL 453

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
              +      L  +  L L+ N+    L   L     L VL  S+N L   +   +    
Sbjct: 454 --TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLP 508

Query: 516 NLDVLLMSRNSFEG-DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570
            L  LL+  N  +       L +     +L++  N L            L  + P 
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ---ERLAEMLPS 561

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 24/212 (11%), Positives = 73/212 (34%), Gaps = 11/212 (5%)

Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINEN-EFDGLLPQCLSNLTYLRVLDLS 232
             + + L L    +  ++      +L N+  + ++ +     L      NL+ +  +++ 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS---RLQVETE 289
           + +    +    +  L  L++L +F+   +    L+ + +     + +++    +     
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 290 N-FPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQN-NTK 347
           N F  L   +   L L +   + ++  +         + L+ N  +            + 
Sbjct: 149 NAFQGLCN-ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 348 LEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
             ++ +    +T  L       +L  L+  N 
Sbjct: 207 PSLLDVSQTSVT-ALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 55/257 (21%)

Query: 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNH 260
           +   L + E     +     SNL  +  + +S +     L      NL+ + ++ + +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 261 FQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP--RFLQ 318
                    L                       LP   LK L + +  +    P    + 
Sbjct: 92  NLTYIDPDALKE---------------------LPL--LKFLGIFNTGLK-MFPDLTKVY 127

Query: 319 YQYDFRYIDLSDNNLVDTFPTWLLQN-NTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
               F  ++++DN  + + P    Q    +   + L+NN  T                + 
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---------------SVQ 172

Query: 378 NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM--GYMERLLFLDLSSNNFSRDLP 435
             +F G           +L  + +++N +   I      G       LD+S  + +  LP
Sbjct: 173 GYAFNG----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP 221

Query: 436 KHFLTSCVSLEFMNLSH 452
              L     L   N   
Sbjct: 222 SKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 13/181 (7%)

Query: 82  NDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNE-S 140
           +     +    F    ++  +++ + R          +  + L  LK L I         
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRN---LTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 141 LVPLLTSLTSLTSLFLQGNSFSEGFKHN--KGLVNLRNLEVLDLSGNRITGSLIMQGICD 198
            +  + S      L +  N +      N  +GL N      L L  N  T   +     +
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFTS--VQGYAFN 177

Query: 199 LKNLVELNINENEFDGLLPQ-CLSNL-TYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSL 256
              L  + +N+N++  ++ +     + +   +LD+S   ++  LP   + +L  L   + 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

Query: 257 F 257
           +
Sbjct: 237 W 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 11/193 (5%)

Query: 88  INMSLFVPFQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LL 145
           I    F     +  + +S +   +  E     ++  +L ++  + I        + P  L
Sbjct: 46  IPSHAFSNLPNISRIYVSIDVTLQQLES----HSFYNLSKVTHIEIRNTRNLTYIDPDAL 101

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKN-LVE 204
             L  L  L +        F     + +     +L+++ N    S+ +     L N  + 
Sbjct: 102 KELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS-LEYLSLFDNHFQE 263
           L +  N F   +     N T L  + L+ NK    +       + S    L +       
Sbjct: 161 LKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 264 SFPLSVLANHSRL 276
           + P   L +   L
Sbjct: 219 ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 15/192 (7%)

Query: 98  ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLTSLTSLFL 156
               L L +        +       +L  +  + +  +   + L      +L+ +T + +
Sbjct: 32  STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 157 QGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL 216
           +             L  L  L+ L +    +     +  +        L I +N +   +
Sbjct: 88  RNTRNLTYI-DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 217 P----QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
           P    Q L N      L L +N  + ++      N T L+ + L  N +           
Sbjct: 147 PVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 273 -HSRLEVFQLSR 283
            +S   +  +S+
Sbjct: 203 VYSGPSLLDVSQ 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 30/242 (12%), Positives = 80/242 (33%), Gaps = 38/242 (15%)

Query: 363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-GYMERLL 421
           ++P+   +   L +     +  +P +    LP +  + +S +     +       + ++ 
Sbjct: 25  RIPSLPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 422 FLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI-----FPKYMNLAKLVFLFLND 476
            +++ +      +    L     L+F+ + +      +       K  +      L + D
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNT----GLKMFPDLTKVYSTDIFFILEITD 139

Query: 477 NQFTGRLEVGLLN--ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ 534
           N +   + V       +    L + NN  +  +  +    + LD + +++N         
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK-------Y 191

Query: 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR 594
           L+ ++                 F   +S    L     S++  +P+  L+   L  L  R
Sbjct: 192 LTVID--------------KDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH--LKELIAR 234

Query: 595 DN 596
           + 
Sbjct: 235 NT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 38/235 (16%)

Query: 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY-MNLA 467
           S+PPS         L L   +    +P H  ++  ++  + +S +    Q+      NL+
Sbjct: 28  SLPPS------TQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 468 KLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526
           K+  + + + +    ++   L     L  L + N  L    P                  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK-------------- 125

Query: 527 FEGDVSVQLSNLEVARILDISENKLYGPLE---FSSNHSSLRYLFPHNNSLSGTIPNALL 583
                   + + ++  IL+I++N     +    F    +    L  +NN  + ++     
Sbjct: 126 --------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176

Query: 584 QSSQLTTLDLRDNEFSGNIAH--LINEDSNLRALLLRGNNLQGNIPEPLCHLRKL 636
             ++L  + L  N++   I         S    L +   ++     + L HL++L
Sbjct: 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 34/216 (15%)

Query: 392 ILPELVYLDMSQNSFEGSIPP-SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450
           + P    L + +     +IP  +   +  +  + +S +   + L  H   +   +  + +
Sbjct: 29  LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 451 SHN----YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSG 505
            +     Y D         L  L FL + +       ++  + +    ++L++++N    
Sbjct: 88  RNTRNLTYIDPDAL---KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 506 QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLR 565
            +P     F  L                          L +  N       ++ N + L 
Sbjct: 145 SIPV--NAFQGLCNET--------------------LTLKLYNNGFTSVQGYAFNGTKLD 182

Query: 566 YLFPHNNSLSGTIPNALLQ--SSQLTTLDLRDNEFS 599
            ++ + N     I         S  + LD+     +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
           +  ++  L L     ++G           NLE L L    +     +  +  L  L +L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLE 77

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
           ++EN   G L      L  L  L+LS NKL     L  +  L  L+ L LF+ 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 10/144 (6%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           ++++L + N   N  +  +  L     +L  L L       G      L  L  L+ L+L
Sbjct: 25  AVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLEL 78

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSG--N 239
           S NRI G L M     L NL  LN++ N+   +   + L  L  L+ LDL + +++   +
Sbjct: 79  SENRIFGGLDMLAEK-LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 240 LPLSVIANLTSLEYLSLFDNHFQE 263
              SV   L  L YL  +D   QE
Sbjct: 138 YRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 92  LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSL 151
           L   F  L  L L +                 L +LK L +  N     L  L   L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLISVS------NLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 152 TSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT 188
           T L L GN   +     + L  L  L+ LDL    +T
Sbjct: 98  THLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 26/135 (19%)

Query: 222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
               +R L L + K +      + A   +LE+LSL +                      L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV--------------------GL 61

Query: 282 SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWL 341
             +     N P LPK  LK L L    I G +    +   +  +++LS N L D      
Sbjct: 62  ISV----SNLPKLPK--LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 342 LQNNTKLEIMFLFNN 356
           L+    L+ + LFN 
Sbjct: 116 LKKLECLKSLDLFNC 130

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.7 bits (165), Expect = 8e-12
 Identities = 64/388 (16%), Positives = 125/388 (32%), Gaps = 38/388 (9%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSF----NESLVPLLTSLTSLTSL 154
           +  L + ++ F   +    +  ++    L++LN     F     + L  +  +  SL S+
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG 214
            +      E     K   NL       L+ +       M  +   + L  L ++      
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM-NLVFPRKLCRLGLS-YMGPN 283

Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH- 273
            +P        +R LDL    L      ++I    +LE L   +        L VLA + 
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG--LEVLAQYC 341

Query: 274 SRLEVFQLSRLQVETENFPWLPKF-------------QLKVLNLRHCNIS----GTIPRF 316
            +L+  ++ R   E                       +L+ + +   +I+     +I  +
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 317 LQYQYDFRYIDLSDNNLVDTFPTW-----LLQNNTKLEIMFLFNN--FLT--GNLQLPNS 367
           L+   DFR + L     +   P       LL    KL     +     LT  G   +   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSF-EGSIPPSMGYMERLLFLDLS 426
             N+  +++       +    F    P L  L+M    F E +I  ++  +  L +L + 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 427 SNNFSRDLPKHFLTS--CVSLEFMNLSH 452
               S         +    ++E +    
Sbjct: 522 GYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 63/400 (15%), Positives = 119/400 (29%), Gaps = 67/400 (16%)

Query: 120 TSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT-SLFLQGNSFSEGFKHNKGLV------ 172
            S + + + +    Y +  + L     +L SL      +   F+   ++  G V      
Sbjct: 48  DSETREHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE 106

Query: 173 ---NLRNLEVLDLSGNRIT-GSLIMQGICDLKNLVELNIN--ENEFDGLLPQCLSNLTYL 226
              NLR L+ +      ++   L         +L  L ++         L   +++   +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 227 RVLDLSSNKLS--GNLPLSVIA-NLTSLEYLSLFDNHFQE--SFPLSVLANHSR-LEVFQ 280
           + L +  +  S      L  +A + TSLE L+ +   F +     L  +A + R L   +
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 281 LSRLQVETENFPWLPKFQLKVLNLRHCNIS--------------------------GTIP 314
           +   ++      +     L+       N                              +P
Sbjct: 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286

Query: 315 RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF-LTGNLQLPNSKRNLPH 373
               +    R +DL    L       L+Q    LE++   N     G   L    + L  
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346

Query: 374 LVISNNSFIGKLPENFGLI-----------LPELVYLDMSQNSF--EG--SIPPSMGYME 418
           L I   +    + +  GL+             EL Y+ +  +    E   SI   +  + 
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 419 RLLFLDLSSNNFSRDLP-----KHFLTSCVSLEFMNLSHN 453
               + L       DLP     +  L  C  L        
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 65/377 (17%), Positives = 116/377 (30%), Gaps = 61/377 (16%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFN---ESLVPLLTSLTSLTSLF 155
           L  LDL ++  +    +   +   +   L  LNI   +      +L  L+T   +L SL 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSG-----NRITGSLIMQGICDLKNLVELNINEN 210
           L      E       L     LE L   G          S +   +   K L  L+   +
Sbjct: 218 LNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 211 EFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
                LP   S  + L  L+LS   +     + ++     L+ L + D        L VL
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG--LEVL 333

Query: 271 ANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330
           A+  +                       L+ L +         P             L++
Sbjct: 334 ASTCK----------------------DLRELRVFPSEPFVMEPNVA----------LTE 361

Query: 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLT--GNLQLPNSKRNLPHLVIS-----NNSFIG 383
             LV      +     KLE +  F   +T    + +  ++ N+    +         ++ 
Sbjct: 362 QGLVS-----VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416

Query: 384 KLPENFGLI-----LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHF 438
             P + G         +L  L +S    +        Y +++  L ++    S     H 
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476

Query: 439 LTSCVSLEFMNLSHNYF 455
           L+ C SL  + +    F
Sbjct: 477 LSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 79/548 (14%), Positives = 149/548 (27%), Gaps = 97/548 (17%)

Query: 120 TSRSLKQLKILNIGYNSFNESLVPLLTSLTSLT----------SLFLQGNSFSEGFKHNK 169
                +++ I N  Y     +++     + S+           +L   G           
Sbjct: 41  ERWCRRKVFIGNC-YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF--DGLLPQCLSNLTYLR 227
              +   LE + L    +T   +       KN   L ++  E      L    +    L+
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159

Query: 228 VLDLSSNKLS--GNLPLSVIA-NLTSLEYLSLFDNHFQESFP-LSVLANHSRLEVFQLSR 283
            LDL  + +       LS      TSL  L++     + SF  L  L             
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP-------- 211

Query: 284 LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQ 343
                          LK L L        +                           LLQ
Sbjct: 212 --------------NLKSLKLNRAVPLEKLAT-------------------------LLQ 232

Query: 344 NNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403
              +LE                  +             +            EL  L    
Sbjct: 233 RAPQLE------------------ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 404 NSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY 463
           ++    +P       RL  L+LS            L  C  L+ + +     D  +    
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 464 MNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523
                L  L +  ++         L    L  + +    L   +  +  + +N  ++ ++
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALITIA 393

Query: 524 RNSFEGDVSVQLSNLEVARILDISENKL-YGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL 582
           RN        +L  +E      ++   L  G      +   LR L     SLSG + + +
Sbjct: 394 RN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-----SLSGLLTDKV 447

Query: 583 LQ-----SSQLTTLDLRDNEFSGN-IAHLINEDSNLRALLLRG-NNLQGNIPEPLCHLRK 635
            +     + ++  L +     S   + H+++   +LR L +R        +      L  
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507

Query: 636 LAIVDISY 643
           +  + +S 
Sbjct: 508 MRSLWMSS 515

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLS 183
           + L++               LT LT L L  N   + S G F        L  L  L L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD------LTELGTLGLA 91

Query: 184 GNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
            N++  SL   G+ D L  L +L +  N+   L       LT L+ L L++N+L  ++P 
Sbjct: 92  NNQLA-SL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
                LT+L+ LSL  N  Q S P        +L+   L
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
                L LQ    +     +     L  L  L+L  N++    +  G+ D L  L  L +
Sbjct: 35  ADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGL 90

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N+   L      +LT L  L L  N+L   LP  V   LT L+ L L  N  Q S P 
Sbjct: 91  ANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 268 SVLANHSRLEVFQLSRLQ 285
                 + L+   LS  Q
Sbjct: 149 GAFDKLTNLQTLSLSTNQ 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 49/145 (33%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSE----GFKHNKGLVNLRNLE 178
            L  ++ L +G N     +   L  LT+LT L L GN         F        L NL+
Sbjct: 61  YLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQLQSLPNGVFDK------LTNLK 112

Query: 179 VLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
            L L  N++  SL   G+ D L NL  LN+  N+   L       LT L  LDLS N+L 
Sbjct: 113 ELVLVENQLQ-SL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQ 262
            +LP  V   LT L+ L L+ N  +
Sbjct: 171 -SLPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLE 178
            L  L  L +  N        +   LT+L  L L  N   S  +G F        L NL 
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK------LTNLT 136

Query: 179 VLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
            L+L+ N++  SL  +G+ D L NL EL+++ N+   L       LT L+ L L  N+L 
Sbjct: 137 YLNLAHNQLQ-SL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 238 GNLPLSVIANLTSLEYLSLFDN 259
            ++P  V   LTSL+Y+ L DN
Sbjct: 195 -SVPDGVFDRLTSLQYIWLHDN 215

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 44/288 (15%)

Query: 99  LHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSF-NESLVPLLTSLTSLTSLF 155
           L  L+L+  R          A         L  +N+         L  LL        L 
Sbjct: 74  LRQLNLAGVRMTPVKCTV-VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 156 LQGNSF--------SEGFKHNKGLVNLRNLEVLDLSGNRITGS---LIMQGICDLKNLVE 204
           LQ NS          +   H++       +  L LS N +T +   ++M+G+    ++  
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQ-----CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 205 LNINENEFD----GLLPQCLSNLTYLRVLDLSSNKL--SGNLPLS-VIANLTSLEYLSLF 257
           L++           LL   L     L+ L+++ N    +  L L+       SLE L L+
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 258 DNHFQE------SFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISG 311
            N                    +R+ V       V       L + Q  + +     +  
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307

Query: 312 TIPRFLQYQYDFRYIDLSDNNLVDTFPTWL---LQNNTKLEIMFLFNN 356
            +        +    DL D+      P      L+   ++  +     
Sbjct: 308 HL--------ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 44/281 (15%), Positives = 85/281 (30%), Gaps = 61/281 (21%)

Query: 125 KQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFS--------EGFKHNKGLVNLRN 176
           + L  L   Y   N+        L+SL  L L G   +              +       
Sbjct: 50  ELLDHLFFHYEFQNQRFS--AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGR-----HA 102

Query: 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD----GLLPQCL-SNLTYLRVLDL 231
           L+ ++L+  ++  + +   +       +L +  N         L   L  +   +  L L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 232 SSNKL--SGNLPLS-VIANLTSLEYLSLFDNHFQES---FPLSVLANHSRLEVFQLSRLQ 285
           S+N L  +G   L   +A  TS+ +LSL      +       + L  +            
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR----------- 211

Query: 286 VETENFPWLPKFQLKVLNLRHCNISGT----IPRFLQYQYDFRYIDLSDNNLVDTFPTWL 341
                       QL+ LN+ +     T    + R  +       + L  N L       L
Sbjct: 212 ------------QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259

Query: 342 ------LQNNTKLEIMFLFNNFLT--GNLQLPNSKRNLPHL 374
                  +   ++ +       ++   ++ L   +RNL   
Sbjct: 260 RDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 88/521 (16%), Positives = 157/521 (30%), Gaps = 144/521 (27%)

Query: 268 SVLANHSRLEVFQLSRLQVETENFP----WLPKFQLKVLNLRHCNISGTIPRFLQ---YQ 320
           + +A    L+V    ++Q           WL        NL++CN   T+   LQ   YQ
Sbjct: 164 TWVA----LDVCLSYKVQ---CKMDFKIFWL--------NLKNCNSPETVLEMLQKLLYQ 208

Query: 321 YDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNS 380
            D  +   SD+    +    L  ++ + E+  L       +    N       L++  N 
Sbjct: 209 IDPNWTSRSDH----SSNIKLRIHSIQAELRRLLK-----SKPYENC------LLVLLNV 253

Query: 381 FIGKLPENFGL---ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
              K    F L   IL  L         F              + LD  S   + D  K 
Sbjct: 254 QNAKAWNAFNLSCKIL--LTTRFKQVTDFLS------AATTTHISLDHHSMTLTPDEVKS 305

Query: 438 FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497
            L   +     +L          P                       + ++         
Sbjct: 306 LLLKYLDCRPQDLPRE--VLTTNP---------------------RRLSIIAE------- 335

Query: 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557
                +   L  W              ++++      ++  ++  I++ S N L  P E+
Sbjct: 336 ----SIRDGLATW--------------DNWK-----HVNCDKLTTIIESSLNVLE-PAEY 371

Query: 558 SSNHSSLRYLFPHNNSLSGTIPNALLQS--SQLTTLDLRD--NEFSGNIAHLINEDSNLR 613
                 L  +FP +      IP  LL      +   D+    N+       L+ +     
Sbjct: 372 RKMFDRL-SVFPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKES 424

Query: 614 ALLLRGNNLQGNIPEPLCHLRKL--AIVDISYNTLNGPIPSCFTNISLWMEKG-NYYNST 670
            + +   ++   +   L +   L  +IVD  YN     IP  F +  L       Y+ S 
Sbjct: 425 TISI--PSIYLELKVKLENEYALHRSIVD-HYN-----IPKTFDSDDLIPPYLDQYFYSH 476

Query: 671 LSLALPAEDNRESSQRVEVKFM------AKNRYESY----KGDVLKYMTGLDLSSNELTG 720
           +   L   ++ E      + F+       K R++S      G +L  +  L      +  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 721 DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
           + P     +  I       +FL    P+   NL  ++  DL
Sbjct: 537 NDPKYERLVNAI------LDFL----PKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 69/443 (15%), Positives = 140/443 (31%), Gaps = 111/443 (25%)

Query: 367 SKRNLPHLVISNNSFIGKLPENFGLIL--PELVYLDMSQNSFEGSIPPSMGY-MERLLFL 423
           SK  + H+++S ++ +      F  +L   E +     Q   E  +  +  + M  +   
Sbjct: 47  SKEEIDHIIMSKDA-VSGTLRLFWTLLSKQEEMV----QKFVEEVLRINYKFLMSPI--- 98

Query: 424 DLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRL 483
              +      +              +  +N  D Q+F KY          ++  Q   +L
Sbjct: 99  --KTEQRQPSMMTRMYIEQR-----DRLYN--DNQVFAKY---------NVSRLQPYLKL 140

Query: 484 EVGLLNA-SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVAR 542
              LL    +  V  + + +L G      GK                  +  ++ L+V  
Sbjct: 141 RQALLELRPAKNV--LIDGVL-G-----SGK------------------TW-VA-LDVCL 172

Query: 543 ---ILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS 599
              +    + K++  L   + +S    L      L    PN   +S   + + LR +   
Sbjct: 173 SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 600 GNIAHLINEDSNLRALL-LRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658
             +  L+        LL L       N+     + +     ++S   L   + + F  ++
Sbjct: 232 AELRRLLKSKPYENCLLVLL------NV----QNAKAWNAFNLSCKIL---LTTRFKQVT 278

Query: 659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNEL 718
            ++      + +L          E         + K          L      DL    L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEV-----KSLLLK---------YLD-CRPQDLPREVL 323

Query: 719 TGDIPSEIGYLGE--IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE 776
           T + P  +  + E     L   +N+      +  +  K+T  ++ S N L    P E  +
Sbjct: 324 TTN-PRRLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLE---PAEYRK 373

Query: 777 LSF--LAIFNVSYNNLSGTVPNK 797
           + F  L++F  S +     +P  
Sbjct: 374 M-FDRLSVFPPSAH-----IPTI 390

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 165 FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLT 224
                 L    NL  L +   +    L ++ +  L  L  L I ++    + P       
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 225 YLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
            L  L+LS N L  +L    +  L SL+ L L  N   
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN---YFDGQIFPKYMN 465
                +   E L  L + +    + L    L     L  + +  +   +     F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HF 78

Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML 503
             +L  L L+ N     L    +   SL  L +S N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 10/122 (8%)

Query: 122 RSLKQLKILNIGYNSFNESLVP-LLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVL 180
              + L  L I      + L    L  L  L +L +  +     F           L  L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRL 85

Query: 181 DLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
           +LS N +    +        +L EL ++ N        C   L +L+  +          
Sbjct: 86  NLSFNALES--LSWKTVQGLSLQELVLSGNPLH-----CSCALRWLQRWEEEGLGGVPEQ 138

Query: 241 PL 242
            L
Sbjct: 139 KL 140

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 217 PQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRL 276
              L     L  L + + +   +L L  +  L  L  L++  +       L  +A  +  
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG------LRFVAPDAFH 77

Query: 277 EVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISG 311
              +LSRL +       L    ++ L+L+   +SG
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYNKLN 767
           +GL  + +    D    +     +  L + N      +       L    ++ +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 768 GQIPPE-LGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
             + P+       L+  N+S+N L        Q  +  E    GNP  C
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 27/127 (21%)

Query: 306 HCNISG--TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363
            C   G       L    +   + + +   +       L+   +L  + +  + L     
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---- 69

Query: 364 LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFL 423
                       ++ ++F            P L  L++S N+ E S+         L  L
Sbjct: 70  -----------FVAPDAFHF---------TPRLSRLNLSFNALE-SLSWKTVQGLSLQEL 108

Query: 424 DLSSNNF 430
            LS N  
Sbjct: 109 VLSGNPL 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 145 LTSL-----TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD- 198
           L  L       +T L+L GN F+      K L N ++L ++DLS NRI+   +       
Sbjct: 22  LKVLPKGIPRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRIST--LSNQSFSN 76

Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
           +  L+ L ++ N    + P+    L  LR+L L  N +S  +P     +L++L +L++  
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA 135

Query: 259 N 259
           N
Sbjct: 136 N 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 167 HNKGLVNL-----RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLS 221
            NKGL  L     R++  L L GN+ T  L+ + + + K+L  ++++ N    L  Q  S
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
           N+T L  L LS N+L   +P      L SL  LSL  N      P
Sbjct: 76  NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGN---SFSEG-FKHNKGLVNLRNLEVLDLS 183
           +IL +  N   +    +  SL +L  L+L  N   +   G F        L  L VLDL 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------LTQLTVLDLG 96

Query: 184 GNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
            N++T  L    + D L +L EL +  N+    LP+ +  LT+L  L L  N+L  ++P 
Sbjct: 97  TNQLT-VL-PSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPH 152

Query: 243 SVIANLTSLEYLSLFDN 259
                L+SL +  LF N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
           T+   L+L  N  ++         +L NL+ L L  N++  +L   G+ D L  L  L++
Sbjct: 40  TNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLG-AL-PVGVFDSLTQLTVLDL 95

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
             N+   L       L +L+ L +  NKL+  LP   I  LT L +L+L  N  + S P 
Sbjct: 96  GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQNQLK-SIPH 152

Query: 268 SVLANHSRLEVFQLSRLQVETENFPW 293
                 S L    L          PW
Sbjct: 153 GAFDRLSSLTHAYLF-------GNPW 171

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 59/355 (16%), Positives = 105/355 (29%), Gaps = 73/355 (20%)

Query: 99  LHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSL-----TSL 151
           +  LDLS N        E      + +   +  LN+  NS        L  +      ++
Sbjct: 24  VTSLDLSLNNLYSISTVE-LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 152 TSLFLQGNSF--------SEGFKHNKGLVNLRNLEVLDLSGNRIT---GSLIMQGICDL- 199
           TSL L GN           +             + VLDL  N  +    S   Q   +L 
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIP-----FTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 200 KNLVELNINENEFDG----LLPQCLSNL-TYLRVLDLSSNKLSGN----LPLSVIANLTS 250
            ++  LN+  N+        L Q L+ +   +  L+L  N L+      L   + +   S
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 251 LEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNIS 310
           +  L L  N        + LA      +F                   +  LNL    + 
Sbjct: 198 VTSLDLSANLLGLK-SYAELA-----YIFS-------------SIPNHVVSLNLCLNCLH 238

Query: 311 GT----IPRFLQYQYDFRYIDLSDNNLVDTFPTWL------LQNNTKLEIMFLFNNFLTG 360
           G     +          + + L  + + +              N  K+ ++      +  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 361 N--------LQLPNSKRNLPHLVISNNSFIGKLPENFGL--ILPELVYLDMSQNS 405
           +        ++  + K ++P L+     F  K   N     I  EL     +   
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 29/162 (17%)

Query: 99  LHVLDLSDNRF--EGWEENKAYNTSRSLKQ----LKILNIGYNSFNES----LVPLLTSL 148
           +  LDLS N    +          +         +  LN+  N  +      L  L  SL
Sbjct: 198 VTSLDLSANLLGLKS-----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 149 TSLTSLFLQGNSFS----EGFKH-NKGLVNLRNLEVLDLSGNRITGS-------LIMQGI 196
             L +++L  +       E  K       N++ + ++D +G  I  S       LI +  
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 197 CDLK--NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
                 +L+   +   +      + L+    LR    +   L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 59/302 (19%)

Query: 169 KGLVNLRNLEVLDLSGNRIT---GSLIMQGICDLK-NLVELNINENEFD----GLLPQCL 220
           +       +  LDLS N +       ++Q   +   ++  LN++ N         L Q L
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 221 -SNLTYLRVLDLSSNKLS--GNLPLS--VIANLTSLEYLSLFDNHFQES----FPLSVLA 271
            +    +  L+LS N LS   +  L   + A   ++  L L  N F       F  +   
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 272 NHSRLEVFQLSRLQVETENFPWL------PKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
             + +    L    +  ++   L          +  LNLR  N++               
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----------SKNC 184

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN------LQLPNSKRNLPHLVISNN 379
            +L+           L      +  + L  N L             +   ++  L +  N
Sbjct: 185 AELAKF---------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 380 SFIGKLPENFGLIL---PELVYLDMSQNSFEG-------SIPPSMGYMERLLFLDLSSNN 429
              G   EN  L+      L  + +  +  +        ++  +   +++++ +D +   
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 430 FS 431
             
Sbjct: 296 IH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 43/294 (14%), Positives = 85/294 (28%), Gaps = 47/294 (15%)

Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS--GNLPLS--VIANLTSLEYLSLFDNH 260
             +  +     + +  S    +  LDLS N L     + L         S+  L+L  N 
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 261 FQ----ESFPLSVLANHSRLEVFQLSRLQVETENFPWL------PKFQLKVLNLRHCNIS 310
                 +     + A  + +    LS   +  ++   L        F + VL+L   + S
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 311 GT-----IPRFLQYQYDFRYIDLSDNNL----VDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
                     F         ++L  N+L     D     L      +  + L  N L   
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 362 --------LQLPNSKRNLPHLVISNNSF----IGKLPENFGLILPELVYLDMSQNSFEGS 409
                   L    +  ++  L +S N        +L   F  I   +V L++  N   G 
Sbjct: 183 NCAELAKFLASIPA--SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 410 ----IPPSMGYMERLLFLDLSSNNFSRDLPK------HFLTSCVSLEFMNLSHN 453
               +      ++ L  + L  +       +          +   +  ++ +  
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
              T L L  N        +     L +L  L+L  N++TG  I     +   ++ EL +
Sbjct: 29  LHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQL 85

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
            EN+   +  +    L  L+ L+L  N++S  +      +L SL  L+L  N F
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 178 EVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
             L L+ N +   +   G+   L +LV+L +  N+  G+ P      ++++ L L  NK+
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 237 SGNLPLSVIANLTSLEYLSLFDNHFQ 262
              +   +   L  L+ L+L+DN   
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 101 VLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP-LLTSLTSLTSLFLQGN 159
            L L+DN       +  +     L  L  L +  N     + P      + +  L L  N
Sbjct: 33  ELLLNDNELGRISSDGLFG---RLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGEN 88

Query: 160 SFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQ 218
              E    NK  + L  L+ L+L  N+I+   +M G  + L +L  LN+  N F+     
Sbjct: 89  KIKE--ISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPFN----- 139

Query: 219 CLSNLTYLR 227
           C  +L +  
Sbjct: 140 CNCHLAWFA 148

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNI 207
              T L L+ NS       N     L +L  L L GN++  SL   G+ + L +L  LN+
Sbjct: 28  AQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQ-SL-PNGVFNKLTSLTYLNL 83

Query: 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL 267
           + N+   L       LT L+ L L++N+L  +LP  V   LT L+ L L+ N  + S P 
Sbjct: 84  STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

Query: 268 SVLANHSRLEVFQL 281
            V    + L+   L
Sbjct: 142 GVFDRLTSLQYIWL 155

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 14/267 (5%)

Query: 12  LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLD 71
           L +E+     ++   +   +M+          D         ++I  +     + ++++ 
Sbjct: 56  LIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIG 115

Query: 72  SAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILN 131
                  D  +    I+         E       D   +     +  + S  L  + +LN
Sbjct: 116 XWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175

Query: 132 IGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSG--NRITG 189
                   +L        +L SL +      +    +    +L NLE L L         
Sbjct: 176 NLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235

Query: 190 SLIMQGICDL------KNLVELNINENEFDGLLPQCLSN---LTYLRVLDLSSNKLS--- 237
              M     L       NL  L I + E   ++ +       L  L  +D+S+  L+   
Sbjct: 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295

Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQES 264
             L L  +  +  L+++++  N+  + 
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 178 EVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
             L+L  N++    +  G+ D L  L +L++++N+   L       LT L +L L  NKL
Sbjct: 31  TRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 237 SGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293
             +LP  V   LT L+ L+L  N  + S P  +    + L+   L          PW
Sbjct: 89  Q-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL-------HTNPW 136

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 176 NLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
           + + L L+ N+IT   +  G+ D L NL +L  N N+   +       LT L  LDL+ N
Sbjct: 34  DKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDN 259
            L  ++P     NL SL ++ L++N
Sbjct: 92  HLK-SIPRGAFDNLKSLTHIYLYNN 115

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 11/188 (5%)

Query: 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRI 187
           + L++   + +  +   L S   + +     +   +    +     ++++   DLS + I
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVI 105

Query: 188 TGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIA- 246
             S +   +     L  L++        +   L+  + L  L+LS         L  +  
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 247 NLTSLEYLSLFDNHFQESFPLSVLANHS--RLEVFQLSRL--QVETENFPWLPKF--QLK 300
           + + L+ L+L          + V   H    +    LS     ++  +   L +    L 
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 301 VLNLRHCN 308
            L+L    
Sbjct: 226 HLDLSDSV 233

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 176 NLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
             +VL L  N+IT   +  G+ D L  L  L+++ N+   L       LT L  L L+ N
Sbjct: 31  TTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDN 259
           +L  ++P     NL SL ++ L +N
Sbjct: 89  QLK-SIPRGAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	844
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.35

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.8e-94  Score=861.51  Aligned_cols=717  Identities=30%  Similarity=0.432  Sum_probs=524.9

Q ss_pred             CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCccc
Q 038149            9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPII   88 (844)
Q Consensus         9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~   88 (844)
                      ..+.++||+|||+||+++.+    |.   ++++|+.  ++|||+|+||+|+  +|||++|+|++..+  .|.+    ..+
T Consensus         7 ~~~~~~~~~all~~k~~~~~----~~---~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l--~g~~----~~l   69 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPD----KN---LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPL--NVGF----SAV   69 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSC----TT---SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCC--CEEH----HHH
T ss_pred             ccCCHHHHHHHHHHHhhCCC----cc---cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCc--CCcc----Ccc
Confidence            34578999999999999964    42   6899974  4799999999998  69999999999876  3331    002


Q ss_pred             CCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchh--hhcCCCCCCEEECCCCCCCCCCc
Q 038149           89 NMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP--LLTSLTSLTSLFLQGNSFSEGFK  166 (844)
Q Consensus        89 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~  166 (844)
                       ++.+.++++|+.++++.+.+....     ..++++++|++|+|++|.+.+.+|.  .++++++|++|+|++|.+ .+.+
T Consensus        70 -~~~l~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~  142 (768)
T 3rgz_A           70 -SSSLLSLTGLESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPG  142 (768)
T ss_dssp             -HHHTTTCTTCCEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCS
T ss_pred             -ChhHhccCcccccCCcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcC
Confidence             246788899999999988764322     4689999999999999999998888  999999999999999998 4556


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCcccc--cCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhh
Q 038149          167 HNKGLVNLRNLEVLDLSGNRITGSLIMQG--ICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV  244 (844)
Q Consensus       167 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  244 (844)
                      +...+.++++|++|++++|++++..+...  +.++++|++|++++|.+++..+  +.++++|++|++++|.+++.+| . 
T Consensus       143 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~-  218 (768)
T 3rgz_A          143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-F-  218 (768)
T ss_dssp             SCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCC-B-
T ss_pred             CHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCc-c-
Confidence            64455899999999999999986544321  7899999999999999997765  3889999999999999998787 4 


Q ss_pred             hcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcC-CCC
Q 038149          245 IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ-YDF  323 (844)
Q Consensus       245 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L  323 (844)
                      ++++++|++|++++|.+++.+| ..+.++++|++|++++|.+....... .+.+|++|++++|.+++.+|..+... ++|
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L  296 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTL  296 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence            9999999999999999998777 46888888888888777765433332 45566666666666666666655543 666


Q ss_pred             CEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccC
Q 038149          324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ  403 (844)
Q Consensus       324 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~  403 (844)
                      ++|++++|++++.+|..+.                        .+++|++|++++|.+.|.+|......+++|++|++++
T Consensus       297 ~~L~Ls~n~l~~~~p~~~~------------------------~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          297 TGLDLSGNHFYGAVPPFFG------------------------SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             SEEECCSSEEEECCCGGGG------------------------GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             CEEECcCCcCCCccchHHh------------------------cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            6666666666655555443                        3345555566666666666655333466677777777


Q ss_pred             CcCCCCCCccccccc-cCcEEeccCCcCCCCCChhhhhc-CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcc
Q 038149          404 NSFEGSIPPSMGYME-RLLFLDLSSNNFSRDLPKHFLTS-CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG  481 (844)
Q Consensus       404 n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  481 (844)
                      |.+++.+|..+..++ +|++|++++|.+++.+|..+... +++|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            766666666666665 66677777666666665544211 4566666666666666666666666666666666666666


Q ss_pred             cccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-C
Q 038149          482 RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-N  560 (844)
Q Consensus       482 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~  560 (844)
                      .+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+ .
T Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            666666666666666666666666666666666666666666666666666666666666666666666665555544 5


Q ss_pred             CCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC--------------------
Q 038149          561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN--------------------  620 (844)
Q Consensus       561 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N--------------------  620 (844)
                      +++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.....+..+.+..+                    
T Consensus       513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            555555555555555555555666666666666666665555555555444443333221                    


Q ss_pred             --cccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccc
Q 038149          621 --NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYE  698 (844)
Q Consensus       621 --~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (844)
                        .+.+..+..+..++.+..++++.|.++|.+|..+++                                          
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~------------------------------------------  630 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN------------------------------------------  630 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS------------------------------------------
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhc------------------------------------------
Confidence              122223333333344444444444444444444332                                          


Q ss_pred             cccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC
Q 038149          699 SYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS  778 (844)
Q Consensus       699 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  778 (844)
                            +++|++|||++|+++|.+|.+++.+++|++|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++.++
T Consensus       631 ------l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          631 ------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             ------SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             ------cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence                  56889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccCCCCCCCCCC
Q 038149          779 FLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELP  828 (844)
Q Consensus       779 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~~  828 (844)
                      +|++||+++|+++|.||..++|.+|...+|.|||++||+|+. +|.+..+
T Consensus       705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             CCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            999999999999999999999999999999999999999986 8976554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-73  Score=683.62  Aligned_cols=655  Identities=27%  Similarity=0.381  Sum_probs=498.1

Q ss_pred             CCCcEEeCCCCCCCCC---CccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCc-cccc
Q 038149           97 QELHVLDLSDNRFEGW---EENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHN-KGLV  172 (844)
Q Consensus        97 ~~L~~L~Ls~n~i~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~  172 (844)
                      .+++.|+|+++.+.|.   .+    ..+.++++|+.++++.+.+.. .|..|+++++|++|+|++|.+ .+.+|. ..++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~l~  123 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLG  123 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEE-EEEGGGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcC-CCcCCChHHHh
Confidence            4667777777766654   33    355666666666666665422 335566666666666666665 333331 1455


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCccc---ccCCCCCCEEECcCCCCCCCCChhhhcCCC
Q 038149          173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---LSNLTYLRVLDLSSNKLSGNLPLSVIANLT  249 (844)
Q Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~  249 (844)
                      ++++|++|+|++|.+++.++...+.++++|++|++++|.+++..|..   +.++++|++|++++|.+++.+|   +..++
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~  200 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV  200 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCT
T ss_pred             CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCC
Confidence            66666666666666555444433355566666666666655555544   4555556666666555554433   24555


Q ss_pred             CCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEcc
Q 038149          250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLS  329 (844)
Q Consensus       250 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  329 (844)
                      +|++|++++|.+.+.+|.  +++++                       +|++|++++|.+++.+|..+..+++|++|+++
T Consensus       201 ~L~~L~Ls~n~l~~~~~~--l~~l~-----------------------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPF--LGDCS-----------------------ALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCEEECCSSCCCSCCCB--CTTCC-----------------------SCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             cCCEEECcCCcCCCCCcc--cccCC-----------------------CCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            555555555555543332  33333                       34445555555666666666666666666666


Q ss_pred             CCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCC
Q 038149          330 DNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGS  409 (844)
Q Consensus       330 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~  409 (844)
                      +|.+.+.+|.                         . .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.
T Consensus       256 ~n~l~~~~~~-------------------------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          256 SNQFVGPIPP-------------------------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             SSCCEESCCC-------------------------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             CCcccCccCc-------------------------c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            6666554442                         1 4678888899999988899988876569999999999999999


Q ss_pred             CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCC-CcCEecCCCCcCccccccccc
Q 038149          410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLA-KLVFLFLNDNQFTGRLEVGLL  488 (844)
Q Consensus       410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~  488 (844)
                      +|..++.+++|++|++++|.+++.+|...+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+.
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            9999999999999999999999899988778999999999999999999999998887 999999999999998888887


Q ss_pred             C--CCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCc
Q 038149          489 N--ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLR  565 (844)
Q Consensus       489 ~--l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~  565 (844)
                      .  +++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+ .+++|+
T Consensus       390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            7  7899999999999999999999999999999999999999999999999999999999999999888877 889999


Q ss_pred             EEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCc
Q 038149          566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNT  645 (844)
Q Consensus       566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  645 (844)
                      +|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++.+++|+.|++++|+
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCch
Q 038149          646 LNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE  725 (844)
Q Consensus       646 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  725 (844)
                      ++|.+|.+++............+........................  ..........+..+..++++.|.+.|.+|..
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF--QGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC--TTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             cCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc--ccccchhhhccccccccccccceecccCchh
Confidence            99999999877653322111100000000000000000000000000  0000111123556677889999999999999


Q ss_pred             hhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcC
Q 038149          726 IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFD  804 (844)
Q Consensus       726 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~  804 (844)
                      ++.+++|++|||++|+++|.+|.+|+++++|+.|||++|+++|.||..++.+++|++|||++|+++|.||.. +.+..+.
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987 7777888


Q ss_pred             ccccCCCCC
Q 038149          805 ESNYRGNPY  813 (844)
Q Consensus       805 ~~~~~gn~~  813 (844)
                      .+.+.+|+.
T Consensus       708 ~L~ls~N~l  716 (768)
T 3rgz_A          708 EIDLSNNNL  716 (768)
T ss_dssp             EEECCSSEE
T ss_pred             EEECcCCcc
Confidence            888888864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.6e-60  Score=561.16  Aligned_cols=583  Identities=22%  Similarity=0.201  Sum_probs=375.7

Q ss_pred             CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149           97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN  176 (844)
Q Consensus        97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  176 (844)
                      +++++|++++|.++++.+    ..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+               
T Consensus        25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------------   85 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL---------------   85 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---------------
T ss_pred             CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---------------
Confidence            455555555555555443    3344555555555555555555555555555555555555544               


Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEec
Q 038149          177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSL  256 (844)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L  256 (844)
                                 + .++...|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..| ..++++++|++|++
T Consensus        86 -----------~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           86 -----------S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLL  152 (680)
T ss_dssp             -----------C-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEEC
T ss_pred             -----------C-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEc
Confidence                       4 3333334444555555555554444444445555555555555555543333 44445555555555


Q ss_pred             CCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccccc
Q 038149          257 FDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDT  336 (844)
Q Consensus       257 ~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  336 (844)
                      ++|.+++..+ ..+...                     ...+|++|++++|.+++..|..+..+.+|+.++++++.+.+.
T Consensus       153 ~~n~l~~~~~-~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~  210 (680)
T 1ziw_A          153 SNNKIQALKS-EELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS  210 (680)
T ss_dssp             CSSCCCCBCH-HHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred             cCCcccccCH-HHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh
Confidence            5554443222 111100                     011344455555555555666666667777777777665533


Q ss_pred             CchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCC--CCccEEEccCCcCCCCCCccc
Q 038149          337 FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLIL--PELVYLDMSQNSFEGSIPPSM  414 (844)
Q Consensus       337 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~  414 (844)
                      ....+...+                     ..++|++|++++|.+.+..|..+.. +  ++|++|++++|.+++..|..+
T Consensus       211 ~~~~~~~~l---------------------~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~  268 (680)
T 1ziw_A          211 LTEKLCLEL---------------------ANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF  268 (680)
T ss_dssp             HHHHHHHHH---------------------TTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTT
T ss_pred             hHHHHHHHh---------------------hhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccc
Confidence            222221100                     1234445555555544444444332 2  236666666666665555556


Q ss_pred             cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCc-----CC----ccccCCCCcCEecCCCCcCcccccc
Q 038149          415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ-----IF----PKYMNLAKLVFLFLNDNQFTGRLEV  485 (844)
Q Consensus       415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L~L~~n~l~~~~~~  485 (844)
                      +.+++|++|++++|.+++..|.. +..+++|++|++++|...+.     +|    ..+..+++|++|++++|.+.+..+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  347 (680)
T 1ziw_A          269 AWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN  347 (680)
T ss_dssp             TTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred             cCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence            66666666666666665433333 35566666666665543321     11    2566777788888888888777777


Q ss_pred             cccCCCCCcEEEccCcccCcC--CChhhhc--CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC-CC-
Q 038149          486 GLLNASSLYVLDVSNNMLSGQ--LPRWIGK--FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF-SS-  559 (844)
Q Consensus       486 ~~~~l~~L~~L~ls~n~l~~~--~p~~l~~--l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~-  559 (844)
                      .+..+++|++|++++|.+...  .+..+..  .++|+.|++++|++++..|..+..+++|++|++++|.+.+.++. .+ 
T Consensus       348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  427 (680)
T 1ziw_A          348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR  427 (680)
T ss_dssp             TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred             HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence            777788888888887765421  1222332  25788888888888888888888888888888888888776653 33 


Q ss_pred             CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC--cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 038149          560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA  637 (844)
Q Consensus       560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  637 (844)
                      .+++|++|++++|++++..+..+..+++|+.|++++|.+.  +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~  507 (680)
T 1ziw_A          428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE  507 (680)
T ss_dssp             TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence            7888888888888888888888999999999999999886  56788899999999999999999987788899999999


Q ss_pred             EEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCc
Q 038149          638 IVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE  717 (844)
Q Consensus       638 ~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  717 (844)
                      .|++++|++++..+..+....                                        ......+++|++|+|++|+
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~~----------------------------------------~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGGP----------------------------------------IYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTSC----------------------------------------CCTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCCccccchhhccCCc----------------------------------------chhhcCCCCCCEEECCCCC
Confidence            999999998854333221100                                        0001126789999999999


Q ss_pred             ccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCcccc-CCCCCCEEEccCCcccccCCC
Q 038149          718 LTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELG-ELSFLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       718 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~  796 (844)
                      ++...+..|+.+++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus       548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9944344689999999999999999977777789999999999999999998888787 789999999999999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.3e-59  Score=551.72  Aligned_cols=588  Identities=21%  Similarity=0.194  Sum_probs=455.1

Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      +.+++++++++. +|..+.  +++++|+|++|.++.  ++...|.++++|++|+|++|.+++ +++..++++++|++|+|
T Consensus         7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L   80 (680)
T 1ziw_A            7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNL   80 (680)
T ss_dssp             SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEEC
T ss_pred             CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEEC
Confidence            467777777754 333333  567777777777643  444566777777777777777763 33445666777777777


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE  287 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~  287 (844)
                      ++|.+++..+..|+++++|++|++++|.++ .++...|+++++|++|++++|.+.+..+ ..+.++              
T Consensus        81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l--------------  144 (680)
T 1ziw_A           81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQL--------------  144 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCC--------------
T ss_pred             CCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhccc--------------
Confidence            777776555556777777777777777776 3333566677777777777776654433 223333              


Q ss_pred             CCCCCCCCCCcccEEEccCCCCCcCcChhhh--cCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149          288 TENFPWLPKFQLKVLNLRHCNISGTIPRFLQ--YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLP  365 (844)
Q Consensus       288 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~  365 (844)
                               .+|++|++++|.+++..+..+.  .+++|++|++++|.+.+..|..+. .+++|+.               
T Consensus       145 ---------~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~---------------  199 (680)
T 1ziw_A          145 ---------ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFG---------------  199 (680)
T ss_dssp             ---------TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECE---------------
T ss_pred             ---------ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhh---------------
Confidence                     3455566666677666666554  457888888888888776665553 4555544               


Q ss_pred             CCCCCCCEEEccCCcccccCChhhh--cCCCCccEEEccCCcCCCCCCcccccccc--CcEEeccCCcCCCCCChhhhhc
Q 038149          366 NSKRNLPHLVISNNSFIGKLPENFG--LILPELVYLDMSQNSFEGSIPPSMGYMER--LLFLDLSSNNFSRDLPKHFLTS  441 (844)
Q Consensus       366 ~~~~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~~  441 (844)
                              |++.++.+.+.....+.  ...++|++|++++|.+++..|..+..++.  |++|++++|.+++..|. .+..
T Consensus       200 --------L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~  270 (680)
T 1ziw_A          200 --------LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAW  270 (680)
T ss_dssp             --------EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTT
T ss_pred             --------hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccC
Confidence                    44444444322221111  02478999999999999988999988866  99999999999855444 4588


Q ss_pred             CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcc-----ccc----ccccCCCCCcEEEccCcccCcCCChhhh
Q 038149          442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG-----RLE----VGLLNASSLYVLDVSNNMLSGQLPRWIG  512 (844)
Q Consensus       442 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~ls~n~l~~~~p~~l~  512 (844)
                      +++|++|++++|++.+..+..+..+++|+.|++++|...+     .+|    ..+..+++|++|++++|.+++..+..|.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  350 (680)
T 1ziw_A          271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT  350 (680)
T ss_dssp             CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred             cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence            9999999999999999999999999999999999886553     223    2678899999999999999999899999


Q ss_pred             cCCCCCEEeCCCCccccc--CCccccC--CCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccC-ccccCCC
Q 038149          513 KFSNLDVLLMSRNSFEGD--VSVQLSN--LEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIP-NALLQSS  586 (844)
Q Consensus       513 ~l~~L~~L~ls~n~l~~~--~~~~l~~--l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p-~~l~~l~  586 (844)
                      .+++|++|++++|.+...  .+..+..  .+.|+.|++++|++.+..+..+ .+++|+.|++++|.+++.+| ..+..++
T Consensus       351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  430 (680)
T 1ziw_A          351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE  430 (680)
T ss_dssp             TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred             cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence            999999999999986432  2223332  3689999999999998888766 89999999999999998776 7899999


Q ss_pred             CCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccC
Q 038149          587 QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ--GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG  664 (844)
Q Consensus       587 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~  664 (844)
                      +|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..+++|+.|++++|++++..|..|.+        
T Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--------  502 (680)
T 1ziw_A          431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG--------  502 (680)
T ss_dssp             TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------
Confidence            9999999999999888999999999999999999987  578999999999999999999999777776765        


Q ss_pred             cccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC--------CchhhhccccCeEe
Q 038149          665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI--------PSEIGYLGEIHALN  736 (844)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i--------p~~l~~l~~L~~L~  736 (844)
                                                              +++|++|+|++|++++..        +..++.+++|++|+
T Consensus       503 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          503 ----------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             ----------------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence                                                    457899999999998642        22478999999999


Q ss_pred             ccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-C-cCCCcCccccCCCCCC
Q 038149          737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-G-QFANFDESNYRGNPYL  814 (844)
Q Consensus       737 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~~~~~~~~gn~~l  814 (844)
                      |++|+++...+..|+++++|+.|||++|++++..|..+..+++|+.|++++|++++.+|.. + .+.++....+.|||+.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            9999999544457999999999999999999777777899999999999999999877754 2 5778889999999999


Q ss_pred             cCccC
Q 038149          815 CGPAV  819 (844)
Q Consensus       815 c~~~~  819 (844)
                      |+++.
T Consensus       623 c~c~~  627 (680)
T 1ziw_A          623 CTCES  627 (680)
T ss_dssp             BCCCC
T ss_pred             cCCcc
Confidence            98763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.5e-55  Score=510.24  Aligned_cols=539  Identities=22%  Similarity=0.179  Sum_probs=370.6

Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      ++++.++..++. +|..+.  +.+++|+|++|.++.  +++..|.++++|++|+|++|+++ .+.+..|.++++|++|+|
T Consensus        15 ~~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L   88 (606)
T 3t6q_A           15 KTYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL   88 (606)
T ss_dssp             TEEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             ceEECCCCCccc-CcCCCC--CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence            467777766643 344343  256777777777743  33356677777777777777766 344455677777777777


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE  287 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~  287 (844)
                      ++|.+++..|.+|+++++|++|++++|.+++ ++...++++++|++|++++|.+.+...                     
T Consensus        89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------  146 (606)
T 3t6q_A           89 TANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKL---------------------  146 (606)
T ss_dssp             TTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCC---------------------
T ss_pred             CCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCc---------------------
Confidence            7777766666667777777777777777663 322556666666666666666654211                     


Q ss_pred             CCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCC--EEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149          288 TENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR--YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLP  365 (844)
Q Consensus       288 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~  365 (844)
                         ..+..+.+|++|++++|.+++..+..+..+++|+  .|++++|.+.+..|..+.  .                    
T Consensus       147 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~--------------------  201 (606)
T 3t6q_A          147 ---PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--S--------------------  201 (606)
T ss_dssp             ---CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT--T--------------------
T ss_pred             ---ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh--h--------------------
Confidence               1122234566666677777766677777777777  777777777765554431  2                    


Q ss_pred             CCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCC--
Q 038149          366 NSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV--  443 (844)
Q Consensus       366 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~--  443 (844)
                         .+|++|++++|.   .++..+. .+..+....+....+.+           +...         .++...+..+.  
T Consensus       202 ---~~L~~L~l~~~~---~~~~~~~-~l~~~~l~~l~~~~~~~-----------~~~~---------~i~~~~~~~l~~~  254 (606)
T 3t6q_A          202 ---AVFQSLNFGGTQ---NLLVIFK-GLKNSTIQSLWLGTFED-----------MDDE---------DISPAVFEGLCEM  254 (606)
T ss_dssp             ---CEEEEEECTTCS---CHHHHHH-HTTTCEEEEEECCCCTT-----------SCCC---------CCCGGGGGGGGGS
T ss_pred             ---ccccccccCCch---hHHHHhh-hccccchhheechhhcc-----------cccc---------ccChhHhchhhcC
Confidence               234444444443   1122221 13333322222221111           0000         11112222222  


Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            5666666666666665556666667777777777666 456666667777777777777776666667777777777777


Q ss_pred             CCcccccCCc-cccCCCCCCEEecCCCcCcccC--CCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC
Q 038149          524 RNSFEGDVSV-QLSNLEVARILDISENKLYGPL--EFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS  599 (844)
Q Consensus       524 ~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  599 (844)
                      +|.+.+.+|. .+..+++|++|++++|.+.+..  +..+ .+++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            7777655544 3677777777777777776654  3333 6778888888888888788888889999999999999998


Q ss_pred             cccch-hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC---CchhhccccccccCcccccccccCC
Q 038149          600 GNIAH-LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI---PSCFTNISLWMEKGNYYNSTLSLAL  675 (844)
Q Consensus       600 ~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~~~~~~~~~~~~~~~~~  675 (844)
                      +..+. .+..+++|++|++++|++++..|..+..+++|+.|++++|++++..   +..+..                   
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-------------------  474 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-------------------  474 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------------
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------------
Confidence            77654 4888999999999999999888888999999999999999987622   223332                   


Q ss_pred             CcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccC
Q 038149          676 PAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM  755 (844)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  755 (844)
                                                   +++|++|+|++|++++..|..++.+++|++|+|++|++++.+|..+.++++
T Consensus       475 -----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  525 (606)
T 3t6q_A          475 -----------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG  525 (606)
T ss_dssp             -----------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred             -----------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence                                         568899999999999888999999999999999999999999999999999


Q ss_pred             CCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149          756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       756 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  796 (844)
                      | .|++++|++++.+|..+..+++|+++++++|++.+.++.
T Consensus       526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9 999999999998888899999999999999999987764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-53  Score=500.55  Aligned_cols=523  Identities=21%  Similarity=0.195  Sum_probs=317.6

Q ss_pred             CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149           98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL  177 (844)
Q Consensus        98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  177 (844)
                      ++++|++++|.++++.+    ..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|.++.  +++..|+++++|
T Consensus        34 ~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L  107 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKAL  107 (606)
T ss_dssp             TCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE--ECTTTTSSCTTC
T ss_pred             cCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc--cChhhhcccccc
Confidence            67888888888777665    567777788888888887777777777777777777777777743  333567777777


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC--eEe
Q 038149          178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE--YLS  255 (844)
Q Consensus       178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~--~L~  255 (844)
                      ++|++++|+++ .+++..++++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...++.+++|+  +|+
T Consensus       108 ~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          108 KHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLN  185 (606)
T ss_dssp             CEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEE
T ss_pred             cEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEe
Confidence            77777777776 343445677777777777777776644344444777777777777776 33335666666666  666


Q ss_pred             cCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccc
Q 038149          256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD  335 (844)
Q Consensus       256 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  335 (844)
                      +++|.+.+..+.                         .+...+|++|++++|.   ..+..+..+..++...+....+. 
T Consensus       186 l~~n~l~~~~~~-------------------------~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-  236 (606)
T 3t6q_A          186 LNGNDIAGIEPG-------------------------AFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-  236 (606)
T ss_dssp             CTTCCCCEECTT-------------------------TTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred             cCCCccCccChh-------------------------HhhhccccccccCCch---hHHHHhhhccccchhheechhhc-
Confidence            666666543331                         1222234555555543   23333333333332222211111 


Q ss_pred             cCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCcccc
Q 038149          336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG  415 (844)
Q Consensus       336 ~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  415 (844)
                                                        .+....+..     .......  -.+|++|++++|.+++..+..+.
T Consensus       237 ----------------------------------~~~~~~i~~-----~~~~~l~--~~~L~~L~l~~n~l~~~~~~~~~  275 (606)
T 3t6q_A          237 ----------------------------------DMDDEDISP-----AVFEGLC--EMSVESINLQKHYFFNISSNTFH  275 (606)
T ss_dssp             ----------------------------------TSCCCCCCG-----GGGGGGG--GSEEEEEECTTCCCSSCCTTTTT
T ss_pred             ----------------------------------cccccccCh-----hHhchhh--cCceeEEEeecCccCccCHHHhc
Confidence                                              000111111     1111111  12567777777777766666677


Q ss_pred             ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccc-cccCCCCCc
Q 038149          416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEV-GLLNASSLY  494 (844)
Q Consensus       416 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~  494 (844)
                      .+++|++|++++|.++ .+|..+ ..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.++. .+..+++|+
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            7777777777777765 565543 4566666666666666655555666666666666666666544433 255566666


Q ss_pred             EEEccCcccCcCC--ChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCC
Q 038149          495 VLDVSNNMLSGQL--PRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNN  572 (844)
Q Consensus       495 ~L~ls~n~l~~~~--p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  572 (844)
                      +|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.               
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------  418 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ---------------  418 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC---------------
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc---------------
Confidence            6666666665443  44555666666666666666555555555555555555555555433222               


Q ss_pred             ccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc---CCcccCCCCCCCEEEcCCCccccC
Q 038149          573 SLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN---IPEPLCHLRKLAIVDISYNTLNGP  649 (844)
Q Consensus       573 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~  649 (844)
                             ..+..+++|++|++++|.+++..|..++.+++|++|++++|++++.   .+..+..+++|+.|++++|++++.
T Consensus       419 -------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          419 -------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             -------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             -------hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence                   2255566666666666666665666666666666666666666542   224566667777777777777666


Q ss_pred             CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149          650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL  729 (844)
Q Consensus       650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  729 (844)
                      .|..|++                                                +++|++|||++|++++.+|..+..+
T Consensus       492 ~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          492 DQHAFTS------------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             CTTTTTT------------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             Chhhhcc------------------------------------------------ccCCCEEECCCCccCcCChhHhCcc
Confidence            6665544                                                3456777777777777777777777


Q ss_pred             cccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149          730 GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       730 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      +.| +|+|++|++++.+|..++.+++|+.|++++|.+++..+
T Consensus       524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            777 77777777777777777777777777777777776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-53  Score=501.05  Aligned_cols=520  Identities=21%  Similarity=0.173  Sum_probs=268.2

Q ss_pred             CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149           97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN  176 (844)
Q Consensus        97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  176 (844)
                      +++++|++++|.+++..+    ..+.++++|++|++++|.+++..|..|+++++|++|+|++|.++.  +++..|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCTT
T ss_pred             CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCccc
Confidence            455666666665555544    345555555555555555555555555555555555555555532  22234455555


Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC---
Q 038149          177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE---  252 (844)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~---  252 (844)
                      |++|++++|.++ .+++..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..| ..++.+++|+   
T Consensus       106 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l  183 (606)
T 3vq2_A          106 LENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVN  183 (606)
T ss_dssp             CCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCC
T ss_pred             CCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhcccccc
Confidence            555555555544 2232334445555555555554443 234444444444444444444442222 3333322222   


Q ss_pred             -eEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCC-cCcChhhhcCCCCCEEEccC
Q 038149          253 -YLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNIS-GTIPRFLQYQYDFRYIDLSD  330 (844)
Q Consensus       253 -~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~  330 (844)
                       +|++++|.+.                         ......+...+|++|++++|.+. +..|..+.            
T Consensus       184 ~~L~l~~n~l~-------------------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------------  226 (606)
T 3vq2_A          184 LSLDMSLNPID-------------------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ------------  226 (606)
T ss_dssp             CEEECTTCCCC-------------------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHH------------
T ss_pred             ceeeccCCCcc-------------------------eeCcccccCceeeeeeccCCccchhHHHHHhc------------
Confidence             3333333332                         11111222223444444444443 22333444            


Q ss_pred             CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEc-cCCcCCCC
Q 038149          331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDM-SQNSFEGS  409 (844)
Q Consensus       331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L-s~n~l~~~  409 (844)
                                   +++.++.+.+..+.+....       .+..       +.+..+.....  -.++.+++ ..+.+.+.
T Consensus       227 -------------~l~~L~~l~l~~~~~~~~~-------~l~~-------~~~~~~~~l~~--l~l~~l~l~~~~~~~~~  277 (606)
T 3vq2_A          227 -------------NLAGLHVHRLILGEFKDER-------NLEI-------FEPSIMEGLCD--VTIDEFRLTYTNDFSDD  277 (606)
T ss_dssp             -------------TTTTCEEEEEEEECCTTSC-------CCSC-------CCGGGGTTGGG--SEEEEEEECCCTTCCGG
T ss_pred             -------------cccccccccccccccccCC-------cccc-------cChHHhhhhhh--ccHhheecccccccccc
Confidence                         4444444443332222110       0000       00011111111  13445555 44555555


Q ss_pred             CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccC
Q 038149          410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLN  489 (844)
Q Consensus       410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  489 (844)
                      +|. +..+++|+.|++++|.+. .+|  .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|            
T Consensus       278 ~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n------------  338 (606)
T 3vq2_A          278 IVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN------------  338 (606)
T ss_dssp             GGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC------------
T ss_pred             ccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC------------
Confidence            554 555666666666666653 344  234445555555555555 2333 22 4444444444444            


Q ss_pred             CCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc--CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEE
Q 038149          490 ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD--VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYL  567 (844)
Q Consensus       490 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  567 (844)
                                  +..+.+  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+              
T Consensus       339 ------------~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--------------  390 (606)
T 3vq2_A          339 ------------KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--------------  390 (606)
T ss_dssp             ------------SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--------------
T ss_pred             ------------cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--------------
Confidence                        332222  233445555555555554433  24444444445544444444331              


Q ss_pred             ECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcc
Q 038149          568 FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL  646 (844)
Q Consensus       568 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  646 (844)
                                +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus       391 ----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  460 (606)
T 3vq2_A          391 ----------MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF  460 (606)
T ss_dssp             ----------ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             ----------chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence                      23334444555555555555554444 4455555666666666666655566666666666666666666


Q ss_pred             ccC-CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCch
Q 038149          647 NGP-IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE  725 (844)
Q Consensus       647 ~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  725 (844)
                      ++. +|..++.                                                +++|++|+|++|++++.+|..
T Consensus       461 ~~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          461 KDNTLSNVFAN------------------------------------------------TTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             GGGEECSCCTT------------------------------------------------CTTCCEEECTTSCCCEECTTT
T ss_pred             CCcchHHhhcc------------------------------------------------CCCCCEEECCCCcCCccChhh
Confidence            652 4444443                                                345667777777777777777


Q ss_pred             hhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEEccCCcccccCCC
Q 038149          726 IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       726 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~  796 (844)
                      ++.+++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            788888888888888888888888888888888888888888 6777788886 588888888888877764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.6e-53  Score=494.20  Aligned_cols=541  Identities=19%  Similarity=0.170  Sum_probs=369.9

Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      ++++.+++.++.. |..+.  ++|++|+|++|.++.  ++...|.++++|++|++++|.++ .+++..|.++++|++|+|
T Consensus        14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeEC
Confidence            4566666666432 22222  455555555555532  22234444455555555554444 232333444444444444


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE  287 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~  287 (844)
                      ++|.+++..|.+|+++++|++|++++|.+++ ++...++++++|++|++++|                            
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n----------------------------  138 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHN----------------------------  138 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSS----------------------------
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCC----------------------------
Confidence            4444444444444444444444444444442 22133444444444444443                            


Q ss_pred             CCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149          288 TENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN  366 (844)
Q Consensus       288 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~  366 (844)
                                          .+.+ .+|..++++++|++|++++|++++..|..+. .+.+|+                 
T Consensus       139 --------------------~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~-----------------  180 (606)
T 3vq2_A          139 --------------------FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENP-----------------  180 (606)
T ss_dssp             --------------------CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCT-----------------
T ss_pred             --------------------cccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccc-----------------
Confidence                                3332 3577888888999999999988876555433 222111                 


Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC-CCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCC
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE-GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL  445 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  445 (844)
                        ..+.+|++++|.+.+. +...+. ..+|++|++++|.++ +..|..+..++.|+.+++..+.+.+..         .+
T Consensus       181 --~~l~~L~l~~n~l~~~-~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l  247 (606)
T 3vq2_A          181 --QVNLSLDMSLNPIDFI-QDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NL  247 (606)
T ss_dssp             --TCCCEEECTTCCCCEE-CTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---------CC
T ss_pred             --cccceeeccCCCccee-Cccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCC---------cc
Confidence              1244566666666533 322222 235666666666554 234445555555555555433332100         00


Q ss_pred             cEEeCcCcccCCcCCccccCCCCcCEecC-CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCC
Q 038149          446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFL-NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR  524 (844)
Q Consensus       446 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  524 (844)
                      ..       +....+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|++|++++
T Consensus       248 ~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~  316 (606)
T 3vq2_A          248 EI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIR  316 (606)
T ss_dssp             SC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEES
T ss_pred             cc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEccc
Confidence            00       000111112222 4556666 66777777776 778888888888888886 455 778888899999999


Q ss_pred             CcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc--cCccccCCCCCCEEECCCCcCCccc
Q 038149          525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT--IPNALLQSSQLTTLDLRDNEFSGNI  602 (844)
Q Consensus       525 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~  602 (844)
                      |.+ +.+| .+ .+++|++|++++|+..+.. ....+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +
T Consensus       317 n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~  391 (606)
T 3vq2_A          317 CQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-M  391 (606)
T ss_dssp             CCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-E
T ss_pred             ccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-c
Confidence            888 5777 45 8888999999988666555 233788999999999999866  48899999999999999999985 6


Q ss_pred             chhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccc
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR  681 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  681 (844)
                      |..+..+++|++|++++|++.+..| ..+..+++|+.|++++|++++..|..+.+                         
T Consensus       392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------  446 (606)
T 3vq2_A          392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------------------------  446 (606)
T ss_dssp             CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------
T ss_pred             hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-------------------------
Confidence            6889999999999999999998887 68999999999999999999888888765                         


Q ss_pred             ccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149          682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD  760 (844)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  760 (844)
                                             +++|++|++++|++++ .+|..++.+++|++|+|++|++++.+|..|+++++|++|+
T Consensus       447 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          447 -----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -----------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence                                   4688999999999998 4799999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCC-CcCccccCCCCCCcCccC
Q 038149          761 LSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFA-NFDESNYRGNPYLCGPAV  819 (844)
Q Consensus       761 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~~~~~gn~~lc~~~~  819 (844)
                      |++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. .+....+.|||..|++++
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999999 56654 4443 478889999999998764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-52  Score=506.07  Aligned_cols=539  Identities=18%  Similarity=0.177  Sum_probs=351.7

Q ss_pred             cccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCCh-hhhcCC
Q 038149          170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL-SVIANL  248 (844)
Q Consensus       170 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l  248 (844)
                      .|.++++|++|+|++|...+.+++..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++.+|. ..++++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            4444444444444444333344344455555555555555555555555555555555555555555543331 124555


Q ss_pred             CCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcC--CCCCEE
Q 038149          249 TSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ--YDFRYI  326 (844)
Q Consensus       249 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L  326 (844)
                      ++|++|++++|.+.+..+...++++++|++                       |++++|.+++..+..+..+  ++|+.|
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~-----------------------L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKS-----------------------IDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCE-----------------------EEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCE-----------------------EECCCCcCCeeCHHHcccccCCccceE
Confidence            555555555555544333223333333332                       2233333333344444444  556666


Q ss_pred             EccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcC--CCCccEEEccCC
Q 038149          327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLI--LPELVYLDMSQN  404 (844)
Q Consensus       327 ~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~Ls~n  404 (844)
                      ++++|.+.+..|..+. .+++                 +.....|++|++++|.+.+.++..+...  ...++.+.++.+
T Consensus       180 ~L~~n~l~~~~~~~~~-~~~~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWG-KCMN-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             EECCSBSCCCCCCCCC-SSSC-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             ECCCCccccccccchh-hcCC-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            6666665554443221 1100                 0011235555555555555555444332  245666666644


Q ss_pred             cCCCCCCccccccccCcEEeccCCcCCCCCChhhhhc--CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCccc
Q 038149          405 SFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS--CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR  482 (844)
Q Consensus       405 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  482 (844)
                      .+...               +..+.+.+ .....+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus       242 ~~~~~---------------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~  305 (844)
T 3j0a_A          242 IMGAG---------------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI  305 (844)
T ss_dssp             CCBCS---------------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred             ccccc---------------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence            33211               11222321 11222233  36889999999998888888888999999999999999888


Q ss_pred             ccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC
Q 038149          483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS  562 (844)
Q Consensus       483 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~  562 (844)
                      .+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..    .++
T Consensus       306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~  381 (844)
T 3j0a_A          306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIP  381 (844)
T ss_dssp             CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCC
T ss_pred             ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCC
Confidence            8888889999999999999998888888999999999999999998888888899999999999999887432    267


Q ss_pred             CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc-chhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEE
Q 038149          563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI-AHLINEDSNLRALLLRGNNLQGNIPE-PLCHLRKLAIVD  640 (844)
Q Consensus       563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~  640 (844)
                      +|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+. .+..+++|+.|+
T Consensus       382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~  457 (844)
T 3j0a_A          382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF  457 (844)
T ss_dssp             SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred             CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence            8999999999988 55544   467899999999998643 34466889999999999999865443 456688999999


Q ss_pred             cCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC
Q 038149          641 ISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG  720 (844)
Q Consensus       641 Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g  720 (844)
                      +++|.+++..+..+..                                           -....+++|+.|||++|++++
T Consensus       458 Ls~N~l~~~~~~~~~~-------------------------------------------~~~~~l~~L~~L~Ls~N~l~~  494 (844)
T 3j0a_A          458 LGENMLQLAWETELCW-------------------------------------------DVFEGLSHLQVLYLNHNYLNS  494 (844)
T ss_dssp             EESCCCSSSCCSCCCS-------------------------------------------SCSSCBCCEECCCCCHHHHTT
T ss_pred             CCCCccccccccccch-------------------------------------------hhhcCcccccEEECCCCcccc
Confidence            9999987433221100                                           000115678899999999998


Q ss_pred             CCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcC
Q 038149          721 DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQF  800 (844)
Q Consensus       721 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  800 (844)
                      .+|..+..+++|+.|+|++|+|++..|..+.  ++|+.|||++|++++.+|..+.   +|+.+++++|++.+.++..   
T Consensus       495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~---  566 (844)
T 3j0a_A          495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS---  566 (844)
T ss_dssp             CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC---
T ss_pred             cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH---
Confidence            8888899999999999999999977777666  8899999999999998887754   6889999999998877643   


Q ss_pred             CCcCccccCCCCCCcCccCCCCCCC
Q 038149          801 ANFDESNYRGNPYLCGPAVRKNCSS  825 (844)
Q Consensus       801 ~~~~~~~~~gn~~lc~~~~~~~c~~  825 (844)
                       .|......+|..+||.+....|..
T Consensus       567 -~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          567 -TFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             -SHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             -HHHHHHHhcCcccccccccCccCC
Confidence             222222345666677665556754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-50  Score=491.20  Aligned_cols=536  Identities=19%  Similarity=0.183  Sum_probs=400.4

Q ss_pred             CEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC-cccccCCCCCCEEE
Q 038149          152 TSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-PQCLSNLTYLRVLD  230 (844)
Q Consensus       152 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  230 (844)
                      +..+.+++.++.  +|.    -.++|++|+|++|.++ .+.+..|.++++|++|+|++|...+.+ |.+|+++++|++|+
T Consensus         7 ~~~dcs~~~L~~--vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            7 RIAFYRFCNLTQ--VPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEEESCCCSSC--CCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             eEEEccCCCCCC--CCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            356667777754  552    3467888888888877 444456778888888888887544443 67778888888888


Q ss_pred             CcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChh-hhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCC
Q 038149          231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS-VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNI  309 (844)
Q Consensus       231 Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l  309 (844)
                      |++|.+++..| ..|+++++|++|++++|.+.+.++.. .+.+++                       +|++|++++|.+
T Consensus        80 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----------------------~L~~L~Ls~N~l  135 (844)
T 3j0a_A           80 LGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----------------------ALTRLDLSKNQI  135 (844)
T ss_dssp             CTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----------------------SCCEEEEESCCC
T ss_pred             CCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccC-----------------------CCCEEECCCCcc
Confidence            88888775445 77778888888888888777644321 234444                       455556666666


Q ss_pred             CcCcC-hhhhcCCCCCEEEccCCcccccCchhHhhcC--CCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCC
Q 038149          310 SGTIP-RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNN--TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLP  386 (844)
Q Consensus       310 ~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p  386 (844)
                      ++..+ ..|+++++|++|++++|.+.+..+..+. .+  ++|+                       .|+++.|.+.+..|
T Consensus       136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~-----------------------~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLS-----------------------FFSLAANSLYSRVS  191 (844)
T ss_dssp             CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSC-----------------------CCEECCSBSCCCCC
T ss_pred             cccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccc-----------------------eEECCCCccccccc
Confidence            65543 5678888888888888888777666553 22  3343                       34444444433333


Q ss_pred             hhhhcCCC------CccEEEccCCcCCCCCCcccccc---ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149          387 ENFGLILP------ELVYLDMSQNSFEGSIPPSMGYM---ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG  457 (844)
Q Consensus       387 ~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  457 (844)
                      ..+.. ++      .|++|++++|.+++.++..+...   ++++.+.++.+.+...                +..+.+.+
T Consensus       192 ~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----------------~~~~~l~~  254 (844)
T 3j0a_A          192 VDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----------------FGFHNIKD  254 (844)
T ss_dssp             CCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----------------SSCSSSTT
T ss_pred             cchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----------------ccccccCC
Confidence            32221 12      36777777776666665555432   4455555554433211                11233333


Q ss_pred             cCCccccCC--CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccc
Q 038149          458 QIFPKYMNL--AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL  535 (844)
Q Consensus       458 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l  535 (844)
                      .....|..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+
T Consensus       255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred             CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence            333344443  789999999999998889999999999999999999999989999999999999999999998889999


Q ss_pred             cCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCE
Q 038149          536 SNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRA  614 (844)
Q Consensus       536 ~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  614 (844)
                      ..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++ ++    .+++|+.|++++|+++ .+|..   ..+++.
T Consensus       335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~  405 (844)
T 3j0a_A          335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANL  405 (844)
T ss_dssp             SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCE
T ss_pred             cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccce
Confidence            999999999999999987777656 79999999999999984 32    3789999999999998 45543   568999


Q ss_pred             EEccCCcccccC-CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149          615 LLLRGNNLQGNI-PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA  693 (844)
Q Consensus       615 L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (844)
                      |++++|++++.. +..+..+++|+.|+|++|++++..+.....                                     
T Consensus       406 L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------  448 (844)
T 3j0a_A          406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS-------------------------------------  448 (844)
T ss_dssp             EECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC-------------------------------------
T ss_pred             eecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc-------------------------------------
Confidence            999999998642 234568999999999999998654432110                                     


Q ss_pred             ccccccccccccccceEEEeecCccc-----CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          694 KNRYESYKGDVLKYMTGLDLSSNELT-----GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       694 ~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                                .+++|+.|+|++|.++     +..|..+..+++|++|+|++|++++.+|..|.++++|+.|+|++|++++
T Consensus       449 ----------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          449 ----------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV  518 (844)
T ss_dssp             ----------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred             ----------cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence                      1467899999999997     4556778999999999999999999999999999999999999999998


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccC
Q 038149          769 QIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAV  819 (844)
Q Consensus       769 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~  819 (844)
                      ..|..+.  ++|+.|++++|+++|.+|..  |..+....+.|||+.|++++
T Consensus       519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          519 LSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             cChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            7777666  89999999999999999964  66788899999999998864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.7e-53  Score=492.02  Aligned_cols=86  Identities=23%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             CcHHHHHHHHHhhhcccccccccc--cccccCCCcCCCCCCCCCC---CceEecCCCCceEEEeeCcCcccCCCCCCCCC
Q 038149           11 CLDSERIGLLEIKAFIKSVSDMQY--ADAILVSWVDNRTSDCCTW---ERIKCNATTGRVMELSLDSAIQVDSDDVNDGF   85 (844)
Q Consensus        11 c~~~~~~~ll~~k~~~~~~~~~~~--~~~~l~~W~~~~~~~~C~w---~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~   85 (844)
                      ....|++||.+||+++....-...  +.....+|+.  +++||.|   .||+|+.. |||++|+|+++.+  .|.+    
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l--~g~l----   97 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGA--SGRV----   97 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCC--EEEE----
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCccc--CCcC----
Confidence            345799999999999865210000  0123568975  3799999   99999864 9999999999877  4433    


Q ss_pred             cccCCCCccCCCCCcEEeCCCCCC
Q 038149           86 PIINMSLFVPFQELHVLDLSDNRF  109 (844)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~Ls~n~i  109 (844)
                          ++.|+++++|++|+|++|.+
T Consensus        98 ----p~~l~~L~~L~~L~Ls~N~~  117 (636)
T 4eco_A           98 ----PDAIGQLTELEVLALGSHGE  117 (636)
T ss_dssp             ----CGGGGGCTTCCEEESCCGGG
T ss_pred             ----ChHHhcCccceEEECcCCcc
Confidence                24567777777777777754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-50  Score=478.72  Aligned_cols=457  Identities=20%  Similarity=0.234  Sum_probs=255.9

Q ss_pred             CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCC---CCCC--CCC------------CceEecCCCCceEEEeeC
Q 038149            9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNR---TSDC--CTW------------ERIKCNATTGRVMELSLD   71 (844)
Q Consensus         9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~---~~~~--C~w------------~gv~c~~~~~~V~~l~L~   71 (844)
                      ..+..+|++||++||+++.+    |       +|+.+.   ..+|  |.|            .||+|+. .+||++|+|+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~----~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls  331 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDG----K-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLA  331 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTG----G-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred             cccchHHHHHHHHHHHHcCC----C-------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECc
Confidence            45667899999999999853    2       786542   1355  999            9999986 7999999999


Q ss_pred             cCcccCCCCCCCCCcccCCCCccCCCCCcEEeC-CCCCCCCCCcccccc-------------------------------
Q 038149           72 SAIQVDSDDVNDGFPIINMSLFVPFQELHVLDL-SDNRFEGWEENKAYN-------------------------------  119 (844)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~-------------------------------  119 (844)
                      ++.+  .|.+        ++.|+++++|++|+| ++|.+.|..+.....                               
T Consensus       332 ~~~L--~G~i--------p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          332 GFGA--KGRV--------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             TTCC--EEEE--------CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             cCCC--CCcC--------chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            9988  4544        357899999999999 888766542210000                               


Q ss_pred             --------------cc--CCCCCCCEEeCCC--CCCCCCchhhhcCCCCCCEEECCCCCCCCC----------------C
Q 038149          120 --------------TS--RSLKQLKILNIGY--NSFNESLVPLLTSLTSLTSLFLQGNSFSEG----------------F  165 (844)
Q Consensus       120 --------------~l--~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----------------~  165 (844)
                                    .+  .....++.+.+..  |.+++ +|..|+++++|++|+|++|.++..                .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                          00  1111222222222  45544 555666666666666666665320                1


Q ss_pred             cCccccc--CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCc-CCc-CCcccccCCC-------CCCEEECcCC
Q 038149          166 KHNKGLV--NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENE-FDG-LLPQCLSNLT-------YLRVLDLSSN  234 (844)
Q Consensus       166 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~Ls~n  234 (844)
                      +| ..++  ++++|++|+|++|.+.+.+| ..++++++|++|+|++|+ +++ .+|..+++++       +|++|++++|
T Consensus       481 iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 EN-EELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TT-SCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CC-hhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            33 2333  55555555555555544444 234555555555555554 444 4444333332       5555555555


Q ss_pred             CCCCCCChh--hhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcC
Q 038149          235 KLSGNLPLS--VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGT  312 (844)
Q Consensus       235 ~l~~~~p~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~  312 (844)
                      .++ .+| .  .++++++|++|++++|.+. .+|                         .+..+.+|+.|++++|++. .
T Consensus       559 ~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp-------------------------~~~~L~~L~~L~Ls~N~l~-~  609 (876)
T 4ecn_A          559 NLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE-------------------------AFGTNVKLTDLKLDYNQIE-E  609 (876)
T ss_dssp             CCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC-------------------------CCCTTSEESEEECCSSCCS-C
T ss_pred             cCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch-------------------------hhcCCCcceEEECcCCccc-c
Confidence            554 444 3  4555555555555555444 333                         3333445666677777776 6


Q ss_pred             cChhhhcCCC-CCEEEccCCcccccCchhHhhcCC--CCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhh
Q 038149          313 IPRFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNT--KLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENF  389 (844)
Q Consensus       313 ~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  389 (844)
                      +|..+..+++ |++|++++|++. .+|..+. .++  +|+.|++++|.+.+                       .+|...
T Consensus       610 lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g-----------------------~ip~l~  664 (876)
T 4ecn_A          610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGS-----------------------EGRNIS  664 (876)
T ss_dssp             CCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTT-----------------------TSSSCS
T ss_pred             chHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCC-----------------------ccccch
Confidence            6777777777 888888888776 5564432 221  24444444444433                       222110


Q ss_pred             ---h-cCCCCccEEEccCCcCCCCCCccc-cccccCcEEeccCCcCCCCCChhhhhcC-------CCCcEEeCcCcccCC
Q 038149          390 ---G-LILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSC-------VSLEFMNLSHNYFDG  457 (844)
Q Consensus       390 ---~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-------~~L~~L~Ls~n~l~~  457 (844)
                         . ..+++|++|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|..++...       ++|++|+|++|+++ 
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-  741 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-  741 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred             hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-
Confidence               0 01235556666666655 344433 25556666666666654 4555443322       26666666666666 


Q ss_pred             cCCcccc--CCCCcCEecCCCCcCcccccccccCCCCCcEEEccC------cccCcCCChhhhcCCCCCEEeCCCCcccc
Q 038149          458 QIFPKYM--NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN------NMLSGQLPRWIGKFSNLDVLLMSRNSFEG  529 (844)
Q Consensus       458 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~------n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  529 (844)
                      .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.+|..+..+++|+.|++++|.+ +
T Consensus       742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~  819 (876)
T 4ecn_A          742 SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R  819 (876)
T ss_dssp             CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred             cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence            4455554  66666666666666665 455566666666666655      555555555555566666666666555 4


Q ss_pred             cCCccccCCCCCCEEecCCCcC
Q 038149          530 DVSVQLSNLEVARILDISENKL  551 (844)
Q Consensus       530 ~~~~~l~~l~~L~~L~ls~n~l  551 (844)
                      .+|..+.  ++|+.|++++|++
T Consensus       820 ~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          820 KVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             BCCSCCC--SSSCEEECCSCTT
T ss_pred             ccCHhhc--CCCCEEECCCCCC
Confidence            4444433  3455555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=454.90  Aligned_cols=276  Identities=17%  Similarity=0.159  Sum_probs=225.4

Q ss_pred             cCEecCCCC-cCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecC
Q 038149          469 LVFLFLNDN-QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDIS  547 (844)
Q Consensus       469 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls  547 (844)
                      ++.+++.++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|+++
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~  333 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT  333 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence            445555555 455556666666677777777777766 466666666 7777777777766 4443  356677777777


Q ss_pred             CCcCcccCCCCCCCCCCcEEECCCCcccccc--CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149          548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI--PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN  625 (844)
Q Consensus       548 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  625 (844)
                      +|.+.+..+. ..+++|+.|++++|.+++..  |..+..+++|++|++++|++.+..+. +..+++|++|++++|++.+.
T Consensus       334 ~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          334 SNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             SCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             CCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            7777665554 46778888888888887554  77888999999999999999865555 88999999999999999987


Q ss_pred             CC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccc
Q 038149          626 IP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV  704 (844)
Q Consensus       626 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (844)
                      .| ..+..+++|+.|++++|++++..|..+.+                                                
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------  443 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------------------  443 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------------------
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------------------------------
Confidence            66 57889999999999999999888877765                                                


Q ss_pred             cccceEEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149          705 LKYMTGLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF  783 (844)
Q Consensus       705 l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  783 (844)
                      +++|++|+|++|+++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++..|..+..+++|+.|
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            467899999999998 6899999999999999999999999999999999999999999999999888899999999999


Q ss_pred             EccCCcccccCCCCCc
Q 038149          784 NVSYNNLSGTVPNKGQ  799 (844)
Q Consensus       784 ~ls~N~l~g~ip~~~~  799 (844)
                      ++++|+++|.+|....
T Consensus       524 ~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          524 WLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             ECCSSCBCCCTTTTHH
T ss_pred             EecCCcccCCCcchHH
Confidence            9999999999997643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=445.34  Aligned_cols=497  Identities=22%  Similarity=0.204  Sum_probs=369.6

Q ss_pred             CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149           97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN  176 (844)
Q Consensus        97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  176 (844)
                      +++++|++++|.++++.+    ..|.++++|++|+|++|++++..+..|+++++|++|+|++|.++.  +++..|.++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTT
T ss_pred             ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc--cCHhhhcCccc
Confidence            467777777777776655    456777777777777777777666777777777777777777643  44456777777


Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCC----
Q 038149          177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL----  251 (844)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L----  251 (844)
                      |++|++++|+++ .++...++++++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++|    
T Consensus       102 L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             CCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCC
T ss_pred             cccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhh
Confidence            777777777776 3444346677777777777777665 25666777777777777777776 3333556555555    


Q ss_pred             CeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccC
Q 038149          252 EYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSD  330 (844)
Q Consensus       252 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~  330 (844)
                      ++|++++|.+.+..+                         ..+...+|+.|++++|.... .++..+..++.++...+..
T Consensus       180 ~~L~l~~n~l~~~~~-------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  234 (570)
T 2z63_A          180 LSLDLSLNPMNFIQP-------------------------GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  234 (570)
T ss_dssp             CEEECTTCCCCEECT-------------------------TTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred             hhcccCCCCceecCH-------------------------HHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence            566666666554332                         12222245566666553321 2455566666666655543


Q ss_pred             CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCC-cccccCChhhhcCCCCccEEEccCCcCCCC
Q 038149          331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN-SFIGKLPENFGLILPELVYLDMSQNSFEGS  409 (844)
Q Consensus       331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~  409 (844)
                      ..+..         ...++  .+....+.+.     .--.++.++++.+ .+.+.+|..+.. +++|++|++++|.++ .
T Consensus       235 ~~~~~---------~~~l~--~~~~~~~~~l-----~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~  296 (570)
T 2z63_A          235 GEFRN---------EGNLE--KFDKSALEGL-----CNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-R  296 (570)
T ss_dssp             EECCC---------CSSCE--ECCTTTTGGG-----GGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-S
T ss_pred             ccccC---------chhhh--hcchhhhccc-----cccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-h
Confidence            22211         00010  0111111100     0013556777777 666667776654 899999999999998 6


Q ss_pred             CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccc--cccc
Q 038149          410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRL--EVGL  487 (844)
Q Consensus       410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~  487 (844)
                      +|..+..+ +|++|++++|.+. .+|.   ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+
T Consensus       297 l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~  369 (570)
T 2z63_A          297 VKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD  369 (570)
T ss_dssp             CCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred             hhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence            88888888 9999999999996 7775   4788999999999998876654  67899999999999998654  6778


Q ss_pred             cCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCcCcccCCCCC-CCCCCc
Q 038149          488 LNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENKLYGPLEFSS-NHSSLR  565 (844)
Q Consensus       488 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~  565 (844)
                      ..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ .+++|+
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            8899999999999999865444 8999999999999999987766 568899999999999999998888766 899999


Q ss_pred             EEECCCCccc-cccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          566 YLFPHNNSLS-GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       566 ~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      .|++++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            9999999998 679999999999999999999999988999999999999999999999888888999999999999999


Q ss_pred             ccccCCCc
Q 038149          645 TLNGPIPS  652 (844)
Q Consensus       645 ~l~~~~p~  652 (844)
                      ++++..|.
T Consensus       529 ~~~~~~~~  536 (570)
T 2z63_A          529 PWDCSCPR  536 (570)
T ss_dssp             CBCCCTTT
T ss_pred             cccCCCcc
Confidence            99998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-47  Score=440.17  Aligned_cols=346  Identities=18%  Similarity=0.185  Sum_probs=269.0

Q ss_pred             CCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcC---CccccCCCC
Q 038149          392 ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI---FPKYMNLAK  468 (844)
Q Consensus       392 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~  468 (844)
                      .+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|++++..   ......+++
T Consensus       146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             cccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence            4677777778777777777777777888888888888774 566666667788888888888877642   122345677


Q ss_pred             cCEecCCCCcCccccc----ccccCCCCCcEEEccCcccCcCC------ChhhhcCCCCCEEeCCCCccccc-----CCc
Q 038149          469 LVFLFLNDNQFTGRLE----VGLLNASSLYVLDVSNNMLSGQL------PRWIGKFSNLDVLLMSRNSFEGD-----VSV  533 (844)
Q Consensus       469 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~l~~~~------p~~l~~l~~L~~L~ls~n~l~~~-----~~~  533 (844)
                      |+.|++++|.+++..+    ..+..+++|+.+++++|.+.+..      ...+..+++|+.|.+.++.+...     ++.
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~  304 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST  304 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred             ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence            8888888887775433    33456678888888888776531      12345677888888888876432     222


Q ss_pred             cccCCCCCCEEecCCCcCcccCCCCC--CCCCCcEEECCCCccccccCc---cccCCCCCCEEECCCCcCCcccc--hhh
Q 038149          534 QLSNLEVARILDISENKLYGPLEFSS--NHSSLRYLFPHNNSLSGTIPN---ALLQSSQLTTLDLRDNEFSGNIA--HLI  606 (844)
Q Consensus       534 ~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~~--~~l  606 (844)
                      .+...++|+.|++++|.+. .+|...  .+++|++|++++|++++.+|.   .+..+++|++|++++|++++..+  ..+
T Consensus       305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred             hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence            2334567899999999876 445433  588999999999999887643   47788999999999999986543  568


Q ss_pred             hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccc
Q 038149          607 NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQR  686 (844)
Q Consensus       607 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (844)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+                                
T Consensus       384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--------------------------------  429 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--------------------------------  429 (549)
T ss_dssp             GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------------------------
T ss_pred             hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------------------------
Confidence            89999999999999999 788899999999999999999872 33221                                


Q ss_pred             eeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149          687 VEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL  766 (844)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  766 (844)
                                        .++|++|||++|++++.+    +.+++|++|+|++|+|+ .+|. .+.+++|++|||++|++
T Consensus       430 ------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l  485 (549)
T 2z81_A          430 ------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL  485 (549)
T ss_dssp             ------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCC
T ss_pred             ------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCcc
Confidence                              246889999999999753    47889999999999999 7887 57899999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149          767 NGQIPPELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       767 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      ++.+|..+..+++|++|++++|+++|.+|..
T Consensus       486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          486 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            9999999999999999999999999988853

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-46  Score=434.39  Aligned_cols=475  Identities=19%  Similarity=0.152  Sum_probs=313.0

Q ss_pred             CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149           97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN  176 (844)
Q Consensus        97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  176 (844)
                      ++|++|++++|.+++..+    ..+.++++|++|++++|++++..|..|+++++|++|+|++|.++.  ++...|+++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTT
T ss_pred             CCccEEECcCCccCccCh----hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCC
Confidence            789999999999988776    578899999999999999999888999999999999999999854  55566899999


Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcC-CcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEe
Q 038149          177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF-DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS  255 (844)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~  255 (844)
                      |++|++++|.+++.-.+..+.++++|++|++++|.+ ....+..|+++++|++|++++|.+++.+| ..++++++|++|+
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~  178 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLT  178 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceEe
Confidence            999999999998422234688999999999999984 44444689999999999999999997777 8899999999999


Q ss_pred             cCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccc
Q 038149          256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD  335 (844)
Q Consensus       256 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  335 (844)
                      +++|.+. .++...+..+++|++|++++|.+....+...                    .....+++|+.|++++|.+.+
T Consensus       179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL--------------------PVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             EECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC--------------------SSCCCCCCCCEEEEESCEEEH
T ss_pred             cccCccc-ccchhhHhhcccccEEEccCCcccccccccc--------------------chhhhhhcccceeccccccch
Confidence            9999875 4454455667777777777776655321110                    111234455555555555544


Q ss_pred             cCchhHh---hcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCC----
Q 038149          336 TFPTWLL---QNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG----  408 (844)
Q Consensus       336 ~~p~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----  408 (844)
                      ..+..+.   ..+++|+.+++++|.+.+......                  ........+++++.|++.++.+..    
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~  299 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLF  299 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGS
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhc
Confidence            4333322   123344444444443332211100                  000000124555556555554432    


Q ss_pred             -CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCc---cccCCCCcCEecCCCCcCccccc
Q 038149          409 -SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFP---KYMNLAKLVFLFLNDNQFTGRLE  484 (844)
Q Consensus       409 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~  484 (844)
                       .++..+...++|+.|++++|.+. .+|..++..+++|++|++++|++.+.++.   .+..+++|++|++++|++++..+
T Consensus       300 ~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  378 (549)
T 2z81_A          300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK  378 (549)
T ss_dssp             CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred             ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence             11222334456677777777764 56666655666666666666666654322   24445555555555555553321


Q ss_pred             --ccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC
Q 038149          485 --VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS  562 (844)
Q Consensus       485 --~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~  562 (844)
                        ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++                        .... . ..+
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~------------------------~l~~-~-~~~  431 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR------------------------VVKT-C-IPQ  431 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS------------------------CCCT-T-SCT
T ss_pred             chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc------------------------cccc-h-hcC
Confidence              23444555555555555554 34444444444455444444443                        2111 1 124


Q ss_pred             CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149          563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS  642 (844)
Q Consensus       563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  642 (844)
                      +|+.|++++|++++..    ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus       432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence            5667777777666532    46788899999999888 5665 4678899999999999998888889999999999999


Q ss_pred             CCccccCCC
Q 038149          643 YNTLNGPIP  651 (844)
Q Consensus       643 ~N~l~~~~p  651 (844)
                      +|++++..|
T Consensus       506 ~N~~~~~~~  514 (549)
T 2z81_A          506 TNPWDCSCP  514 (549)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCccCCCc
Confidence            999988777

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-47  Score=447.50  Aligned_cols=431  Identities=17%  Similarity=0.260  Sum_probs=344.3

Q ss_pred             cccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcc------cc------cCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149          298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL------VD------TFPTWLLQNNTKLEIMFLFNNFLTGNLQLP  365 (844)
Q Consensus       298 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~  365 (844)
                      +++.|+|+++.+.|.+|..++++++|++|++++|.+      .+      .+|....   ..++ +++.++.+.+.....
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~---~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK---QKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHH---HHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHH---HHHH-hhHHHhhhccCchhh
Confidence            688999999999999999999999999999999976      22      3333221   2222 333333332211100


Q ss_pred             --------------------CCCCCCCEEEcc--CCcccccCChhhhcCCCCccEEEccCCcCCCC--------------
Q 038149          366 --------------------NSKRNLPHLVIS--NNSFIGKLPENFGLILPELVYLDMSQNSFEGS--------------  409 (844)
Q Consensus       366 --------------------~~~~~L~~L~l~--~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~--------------  409 (844)
                                          .....++.+.+.  .|.++| +|..++. +++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence                                011223333332  578887 8888765 89999999999999875              


Q ss_pred             ---CCcccc--ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcc-cCC-cCCccccCC------CCcCEecCCC
Q 038149          410 ---IPPSMG--YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY-FDG-QIFPKYMNL------AKLVFLFLND  476 (844)
Q Consensus       410 ---~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~  476 (844)
                         +|..++  ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..+      ++|++|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               888888  99999999999999888888765 688999999999998 887 778777765      8999999999


Q ss_pred             CcCcccccc--cccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCC-CCEEecCCCcCcc
Q 038149          477 NQFTGRLEV--GLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV-ARILDISENKLYG  553 (844)
Q Consensus       477 n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~  553 (844)
                      |+++ .+|.  .+..+++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+. 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            9998 7787  88899999999999999998888 8888999999999999988 77888888888 999999999988 


Q ss_pred             cCCCCC-C--CCCCcEEECCCCccccccCcccc-------CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc
Q 038149          554 PLEFSS-N--HSSLRYLFPHNNSLSGTIPNALL-------QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ  623 (844)
Q Consensus       554 ~~~~~~-~--~~~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  623 (844)
                      .+|..+ .  +++|+.|++++|.+++.+|..+.       .+++|++|++++|++++..+..+..+++|++|+|++|+++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            566554 3  34799999999999988888888       7788999999999998554455667899999999999998


Q ss_pred             ccCCcccCCC--------CCCCEEEcCCCccccCCCchhh--ccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149          624 GNIPEPLCHL--------RKLAIVDISYNTLNGPIPSCFT--NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA  693 (844)
Q Consensus       624 ~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (844)
                       .+|..+...        ++|+.|+|++|+++ .+|..+.  .                                     
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-------------------------------------  511 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT-------------------------------------  511 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT-------------------------------------
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc-------------------------------------
Confidence             666654432        28999999999988 6776654  3                                     


Q ss_pred             ccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec------cCcccccccCcccccccCCCEEeCCCCccc
Q 038149          694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL------SNNFLSGSIPRSFSNLKMTESMDLSYNKLN  767 (844)
Q Consensus       694 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  767 (844)
                                 +++|+.|+|++|++++ +|..++.+++|++|+|      ++|++.+.+|..++++++|+.|+|++|++ 
T Consensus       512 -----------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-  578 (636)
T 4eco_A          512 -----------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-  578 (636)
T ss_dssp             -----------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             -----------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence                       5678899999999997 8999999999999999      56788889999999999999999999999 


Q ss_pred             ccCCccccCCCCCCEEEccCCccccc
Q 038149          768 GQIPPELGELSFLAIFNVSYNNLSGT  793 (844)
Q Consensus       768 ~~ip~~l~~l~~L~~L~ls~N~l~g~  793 (844)
                      +.+|..+.  ++|++|++++|++...
T Consensus       579 ~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          579 RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CccCHhHh--CcCCEEECcCCCCccc
Confidence            68888766  7899999999987643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=422.42  Aligned_cols=439  Identities=21%  Similarity=0.250  Sum_probs=228.0

Q ss_pred             CCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEE
Q 038149          200 KNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF  279 (844)
Q Consensus       200 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  279 (844)
                      ++|++|++++|.+++..|..|.++++|++|++++|++++..| ..|+++++|++|++++|.++ .+|..   .++     
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~-----   90 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLV-KISCH---PTV-----   90 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCC-EEECC---CCC-----
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCcee-ecCcc---ccC-----
Confidence            444444444444444444444444444444444444442223 44444444444444444443 12210   111     


Q ss_pred             EccCccccCCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcc
Q 038149          280 QLSRLQVETENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL  358 (844)
Q Consensus       280 ~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l  358 (844)
                                        +|++|++++|.+++ .+|..++.+++|++|++++|.+.+.   .+. .              
T Consensus        91 ------------------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~-~--------------  134 (520)
T 2z7x_B           91 ------------------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL-P--------------  134 (520)
T ss_dssp             ------------------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG-G--------------
T ss_pred             ------------------CccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcc-c--------------
Confidence                              23334444444443 3567777888888888888877541   111 1              


Q ss_pred             cccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCc--cEEEccCCcC--CCCCCccccccc-cCcEEeccCCcCCCC
Q 038149          359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPEL--VYLDMSQNSF--EGSIPPSMGYME-RLLFLDLSSNNFSRD  433 (844)
Q Consensus       359 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~  433 (844)
                                                        +++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.
T Consensus       135 ----------------------------------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~  180 (520)
T 2z7x_B          135 ----------------------------------IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF  180 (520)
T ss_dssp             ----------------------------------GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC
T ss_pred             ----------------------------------cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh
Confidence                                              2222  4444444444  344444444333 222345555555544


Q ss_pred             CChhhhhcCCCCcEEeCcCcc-------cCCcCCccccCCCCcCEecCCCCcCccccccccc---CCCCCcEEEccCccc
Q 038149          434 LPKHFLTSCVSLEFMNLSHNY-------FDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL---NASSLYVLDVSNNML  503 (844)
Q Consensus       434 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~ls~n~l  503 (844)
                      ++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+.   ..++|++|++++|++
T Consensus       181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (520)
T 2z7x_B          181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL  259 (520)
T ss_dssp             CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred             hhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence            444444444555555555443       222222 334444444444444444322111110   123455555555555


Q ss_pred             CcCCChhh-----hcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc
Q 038149          504 SGQLPRWI-----GKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT  577 (844)
Q Consensus       504 ~~~~p~~l-----~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  577 (844)
                      +|.+|..+     ..+++|+.+++++|.+  .+| ..+..+                    +...+|+.|++++|.+.+.
T Consensus       260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~--------------------~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          260 QGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI--------------------FSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             ESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH--------------------HHTCCCSEEEEESSCCCCC
T ss_pred             cCccccchhhcccccCceeEeccccccce--ecchhhhhcc--------------------cccCceeEEEcCCCccccc
Confidence            54444444     4444444444444444  222 122111                    0012344444444443321


Q ss_pred             cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEcCCCccccCCCch-h
Q 038149          578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG--NIPEPLCHLRKLAIVDISYNTLNGPIPSC-F  654 (844)
Q Consensus       578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~  654 (844)
                      .  .+..+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|.. +
T Consensus       318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence            1  11345556666666666665555556666666666666666654  34455666666666666666666544442 2


Q ss_pred             hccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCe
Q 038149          655 TNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHA  734 (844)
Q Consensus       655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  734 (844)
                      ..                                                +++|++|++++|++++.+|..+.  ++|++
T Consensus       396 ~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~  425 (520)
T 2z7x_B          396 SW------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKV  425 (520)
T ss_dssp             CC------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred             cc------------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence            21                                                34567777777777766666554  67778


Q ss_pred             EeccCcccccccCcccccccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCC
Q 038149          735 LNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       735 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      |+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++.++
T Consensus       426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            888888887 77777778888888888888887 45554 7788888888888888887665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-43  Score=417.18  Aligned_cols=520  Identities=22%  Similarity=0.201  Sum_probs=277.0

Q ss_pred             CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149           98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL  177 (844)
Q Consensus        98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  177 (844)
                      ++++|||++|.|+++.+    ..|.++++|++|+|++|+++++.+.+|.++++|++|+|++|+++.  ++...|.++++|
T Consensus        53 ~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTC
T ss_pred             CCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCC
Confidence            56666666666666555    455666666666666666666555566666666666666665533  444445555555


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcC-CcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEec
Q 038149          178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL-LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSL  256 (844)
Q Consensus       178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L  256 (844)
                      ++|+|++|+++ .++...|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+.+++.   
T Consensus       127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~---  201 (635)
T 4g8a_A          127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPL---  201 (635)
T ss_dssp             CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTT---
T ss_pred             CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhh---
Confidence            55555555555 34434455555555555555555432 34445555555555555555542222 33332222111   


Q ss_pred             CCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccccc
Q 038149          257 FDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDT  336 (844)
Q Consensus       257 ~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  336 (844)
                                        .                       ...++++.|.+....+..+ ....++.+++.+|.....
T Consensus       202 ------------------~-----------------------~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~  239 (635)
T 4g8a_A          202 ------------------L-----------------------NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLN  239 (635)
T ss_dssp             ------------------C-----------------------CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHH
T ss_pred             ------------------h-----------------------hhhhhcccCcccccCcccc-cchhhhhhhhhccccccc
Confidence                              0                       1122222333322222211 112233344444433322


Q ss_pred             CchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC---CCCCcc
Q 038149          337 FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE---GSIPPS  413 (844)
Q Consensus       337 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~~~~  413 (844)
                      ++...+..+..++...+..+......       .++.          .....+ ..+..+...++..+...   ..++..
T Consensus       240 ~~~~~~~~l~~l~~~~l~~~~~~~~~-------~l~~----------~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~  301 (635)
T 4g8a_A          240 VMKTCIQGLAGLEVHRLVLGEFRNEG-------NLEK----------FDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDL  301 (635)
T ss_dssp             HHHHHHHTTTTCEEEEEEEECCTTSC-------CCSC----------CCTTTT-GGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred             ccchhhcCCccccccccccccccccc-------cccc----------cccccc-ccccchhhhhhhhhhhcccccchhhh
Confidence            33333334444443333222211110       0000          000000 01223333333332221   122334


Q ss_pred             ccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCC
Q 038149          414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL  493 (844)
Q Consensus       414 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  493 (844)
                      +..+.+++.+++.++.+.+ ++.  +....+++.|++.+|.+....+.   .++.|+.+++.+|.+....  ....+++|
T Consensus       302 ~~~~~~l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L  373 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSL  373 (635)
T ss_dssp             TGGGTTCSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTC
T ss_pred             hhhhccccccccccccccc-ccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cccccccc
Confidence            4455566666666666542 222  23455666666666665543322   2344555555555544221  22344555


Q ss_pred             cEEEccCcccCc--CCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCC
Q 038149          494 YVLDVSNNMLSG--QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHN  571 (844)
Q Consensus       494 ~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  571 (844)
                      +.+++++|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++                       |+.+++..
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~-----------------------L~~l~l~~  429 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQ-----------------------LEHLDFQH  429 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTT-----------------------CCEEECTT
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccc-----------------------ccchhhhh
Confidence            555555555432  233444445555555555554432 2223444444                       44444444


Q ss_pred             Ccccccc-CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc-ccCCcccCCCCCCCEEEcCCCccccC
Q 038149          572 NSLSGTI-PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ-GNIPEPLCHLRKLAIVDISYNTLNGP  649 (844)
Q Consensus       572 n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~  649 (844)
                      +...... +..+..+++++.+++++|.+.+..+..+..++.|++|++++|++. +.+|..+..+++|++|+|++|++++.
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l  509 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  509 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence            4443332 234566677777777777777777777777777777777777643 45677777888888888888888877


Q ss_pred             CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149          650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL  729 (844)
Q Consensus       650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  729 (844)
                      .|..|.+                                                +++|++|+|++|+|++..|..+..+
T Consensus       510 ~~~~f~~------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l  541 (635)
T 4g8a_A          510 SPTAFNS------------------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCL  541 (635)
T ss_dssp             CTTTTTT------------------------------------------------CTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred             ChHHHcC------------------------------------------------CCCCCEEECCCCcCCCCChhHHhCC
Confidence            7777665                                                4567788888888887777778888


Q ss_pred             cccCeEeccCcccccccCcccccc-cCCCEEeCCCCcccc
Q 038149          730 GEIHALNLSNNFLSGSIPRSFSNL-KMTESMDLSYNKLNG  768 (844)
Q Consensus       730 ~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~  768 (844)
                      ++|++|||++|+|++..|..+..+ ++|+.|+|++|.++.
T Consensus       542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            888888888888888888888877 678888888888774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-43  Score=416.57  Aligned_cols=534  Identities=21%  Similarity=0.187  Sum_probs=351.1

Q ss_pred             cEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCE
Q 038149          100 HVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEV  179 (844)
Q Consensus       100 ~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  179 (844)
                      ++.+.++-+++.++.     .+  -+.+++|||++|+|++..+.+|.++++|++|+|++|.|+.  ++..+|.++++|++
T Consensus        34 ~~~~c~~~~l~~vP~-----~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           34 ITYQCMELNFYKIPD-----NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLST  104 (635)
T ss_dssp             TEEECTTSCCSSCCS-----SS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred             CEEECCCCCcCccCC-----CC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCE
Confidence            345666666666543     11  1468888888888887777788888888888888887754  55566777777777


Q ss_pred             EEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCC
Q 038149          180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFD  258 (844)
Q Consensus       180 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~  258 (844)
                      |+|++|+++ .+++..|.++++|++|+|++|.+++..+..|+++++|++|++++|.+++ .+| ..++.+++|++|++++
T Consensus       105 L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          105 LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             EECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCS
T ss_pred             EEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccC
Confidence            777777776 5565667777777777777777776666667777777777777777753 234 5566666666666666


Q ss_pred             CcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCC----CCCEEEccCCccc
Q 038149          259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY----DFRYIDLSDNNLV  334 (844)
Q Consensus       259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~----~L~~L~Ls~n~l~  334 (844)
                      |++++.                                                .+..+..+.    ....++++.|.+.
T Consensus       183 N~l~~~------------------------------------------------~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          183 NKIQSI------------------------------------------------YCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             SCCCEE------------------------------------------------CGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cccccc------------------------------------------------ccccccchhhhhhhhhhhhcccCccc
Confidence            665432                                                222333222    2346777777776


Q ss_pred             ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC------C
Q 038149          335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE------G  408 (844)
Q Consensus       335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~------~  408 (844)
                      ...+..+  .                       ...++.+++.+|.....++......++.++...+..+...      .
T Consensus       215 ~i~~~~~--~-----------------------~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          215 FIQPGAF--K-----------------------EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             EECTTTT--T-----------------------TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             ccCcccc--c-----------------------chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            4433322  1                       1223345555554433333333334566665555433221      1


Q ss_pred             CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCccccccccc
Q 038149          409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL  488 (844)
Q Consensus       409 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  488 (844)
                      .....+..+..+...++..+......                      ......+..+.+++.+.+.++.+....+  +.
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~  325 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--FS  325 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEECGG--GG
T ss_pred             ccccccccccchhhhhhhhhhhcccc----------------------cchhhhhhhhcccccccccccccccccc--cc
Confidence            22223333334443333332221100                      0112233344555555555555543222  33


Q ss_pred             CCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc--CCCCC-CCCCCc
Q 038149          489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP--LEFSS-NHSSLR  565 (844)
Q Consensus       489 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~-~~~~L~  565 (844)
                      ....++.|++.+|.+.+..+   ..+..|+.+++.+|......  ....+++|+.+++++|.+...  .+... ...+|+
T Consensus       326 ~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  400 (635)
T 4g8a_A          326 YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK  400 (635)
T ss_dssp             SCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred             cchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhh
Confidence            45566666666666654332   23456666666666554322  234566677777777766432  22222 566777


Q ss_pred             EEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      .+++..+... ..+..+..+++|+.+++++|......+ ..+..+++++.++++.|++.+..|..+..++.|+.|++++|
T Consensus       401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence            8888777776 455667888999999999888765544 56788899999999999999888888999999999999999


Q ss_pred             cccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149          645 TLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP  723 (844)
Q Consensus       645 ~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  723 (844)
                      ++.+ .+|..|..                                                +++|++|||++|++++.+|
T Consensus       480 ~~~~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~N~L~~l~~  511 (635)
T 4g8a_A          480 SFQENFLPDIFTE------------------------------------------------LRNLTFLDLSQCQLEQLSP  511 (635)
T ss_dssp             EEGGGEECSCCTT------------------------------------------------CTTCCEEECTTSCCCEECT
T ss_pred             ccccccCchhhhh------------------------------------------------ccccCEEECCCCccCCcCh
Confidence            7543 45555544                                                4678899999999998889


Q ss_pred             chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCC-CCCCEEEccCCcccccCC
Q 038149          724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip  795 (844)
                      ..|+.+++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..+..+ ++|++|++++|++++...
T Consensus       512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999999998888899999999999999999999999999888 689999999999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9e-45  Score=430.46  Aligned_cols=437  Identities=17%  Similarity=0.218  Sum_probs=352.4

Q ss_pred             CcccEEEccCCCCCcCcChhhhcCCCCCEEEc-cCCcccccCchhHhhcCCCCc-----EEE-------c---CCCccc-
Q 038149          297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL-SDNNLVDTFPTWLLQNNTKLE-----IMF-------L---FNNFLT-  359 (844)
Q Consensus       297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~-------l---~~n~l~-  359 (844)
                      .+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|.........+.     .+.       +   ....+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46899999999999999999999999999999 888887764422100000000     000       0   000000 


Q ss_pred             -------cc---ccC-CCCCCCCCEEEccC--CcccccCChhhhcCCCCccEEEccCCcCCC-----------------C
Q 038149          360 -------GN---LQL-PNSKRNLPHLVISN--NSFIGKLPENFGLILPELVYLDMSQNSFEG-----------------S  409 (844)
Q Consensus       360 -------~~---~~~-~~~~~~L~~L~l~~--n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~  409 (844)
                             ..   ..+ ......++.+.+..  |.+++ +|..++. +++|++|+|++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                   00   000 01223444444544  88887 8988775 9999999999999998                 3


Q ss_pred             CCcccc--ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcc-cCC-cCCccccCCC-------CcCEecCCCCc
Q 038149          410 IPPSMG--YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY-FDG-QIFPKYMNLA-------KLVFLFLNDNQ  478 (844)
Q Consensus       410 ~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~  478 (844)
                      +|..++  .+++|++|+|++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..++       +|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            888887  99999999999999999999765 789999999999998 888 7776665554       99999999999


Q ss_pred             Ccccccc--cccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCC-CCEEecCCCcCcccC
Q 038149          479 FTGRLEV--GLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV-ARILDISENKLYGPL  555 (844)
Q Consensus       479 l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~  555 (844)
                      ++ .+|.  .+..+++|++|++++|+++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            99 7888  8999999999999999999 788 8999999999999999999 88888999999 999999999998 56


Q ss_pred             CCCC-CC--CCCcEEECCCCccccccCccc---c--CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCC
Q 038149          556 EFSS-NH--SSLRYLFPHNNSLSGTIPNAL---L--QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP  627 (844)
Q Consensus       556 ~~~~-~~--~~L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  627 (844)
                      |..+ ..  ++|+.|++++|++++.+|...   .  .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip  713 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP  713 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence            6555 33  459999999999998776432   2  3458999999999999544444568999999999999999 777


Q ss_pred             cccCCCC--------CCCEEEcCCCccccCCCchhh--ccccccccCcccccccccCCCcccccccccceeeeeeecccc
Q 038149          628 EPLCHLR--------KLAIVDISYNTLNGPIPSCFT--NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY  697 (844)
Q Consensus       628 ~~l~~l~--------~L~~L~Ls~N~l~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (844)
                      ..+....        +|+.|+|++|+++ .+|..+.  .                                         
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~-----------------------------------------  751 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT-----------------------------------------  751 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT-----------------------------------------
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc-----------------------------------------
Confidence            7655433        8999999999998 7777664  3                                         


Q ss_pred             ccccccccccceEEEeecCcccCCCCchhhhccccCeEeccC------cccccccCcccccccCCCEEeCCCCcccccCC
Q 038149          698 ESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSN------NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       698 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                             +++|+.|+|++|++++ +|..++.+++|+.|+|++      |++.+.+|..|+++++|+.|+|++|++ +.+|
T Consensus       752 -------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          752 -------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             -------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             -------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence                   5689999999999997 899999999999999976      889999999999999999999999999 7999


Q ss_pred             ccccCCCCCCEEEccCCcccccCC
Q 038149          772 PELGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       772 ~~l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      ..+.  ++|+.|||++|++...-+
T Consensus       823 ~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          823 EKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             SCCC--SSSCEEECCSCTTCEEEC
T ss_pred             Hhhc--CCCCEEECCCCCCCccCh
Confidence            9876  699999999999876544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=413.96  Aligned_cols=458  Identities=19%  Similarity=0.194  Sum_probs=300.5

Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      ++||+++|+++. +|..+.  ++|++|++++|.++.  +++..|.++++|++|+|++|+++ .+++..|+++++|++|+|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEec
Confidence            578889988875 555554  788888888888854  44467888888888888888887 454567888888888888


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV  286 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i  286 (844)
                      ++|.++. +|..  .+++|++|++++|.+++ .+| ..++++++|++|++++|.+.+    ..+..+++|          
T Consensus        77 s~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L----------  138 (520)
T 2z7x_B           77 SHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL----------  138 (520)
T ss_dssp             CSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGGGGGTTS----------
T ss_pred             CCCceee-cCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch----hhccccccc----------
Confidence            8888884 5554  78888888888888875 356 678888888888888888765    235555555          


Q ss_pred             cCCCCCCCCCCcccEEEccCCCC--CcCcChhhhcCC-CCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCc------
Q 038149          287 ETENFPWLPKFQLKVLNLRHCNI--SGTIPRFLQYQY-DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF------  357 (844)
Q Consensus       287 ~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~------  357 (844)
                                 +|++|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.      
T Consensus       139 -----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  207 (520)
T 2z7x_B          139 -----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS  207 (520)
T ss_dssp             -----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH
T ss_pred             -----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc
Confidence                       124444444444  444444444433 222345555555555554444455555555555554      


Q ss_pred             -ccccccCCCCCCCCCEEEccCCcccccCChhhhc--CCCCccEEEccCCcCCCCCCccc-----cccccCcEEeccCCc
Q 038149          358 -LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGL--ILPELVYLDMSQNSFEGSIPPSM-----GYMERLLFLDLSSNN  429 (844)
Q Consensus       358 -l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~  429 (844)
                       +.+..+....+++|++|++++|.+.+..+..+..  ..++|++|++++|++++.+|..+     +.+++|+.+++++|.
T Consensus       208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence             3332222335566777777777665533222211  14578888888888888888877     788888888888888


Q ss_pred             CCCCCChhhhhcC---CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCc-
Q 038149          430 FSRDLPKHFLTSC---VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG-  505 (844)
Q Consensus       430 l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-  505 (844)
                      +  .+|...+..+   .+|+.|++++|.+.....  +..+++|++|++++|++++..|..+..+++|++|++++|++++ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            7  5663322333   567777777777654321  1455566666666666665555555556666666666666554 


Q ss_pred             -CCChhhhcCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCcccc
Q 038149          506 -QLPRWIGKFSNLDVLLMSRNSFEGDVSVQ-LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALL  583 (844)
Q Consensus       506 -~~p~~l~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~  583 (844)
                       .+|..+..+++|++|++++|.+.+.+|.. +.                       .+++|+.|++++|++++.+|..+.
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-----------------------~l~~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-----------------------WTKSLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC-----------------------CCTTCCEEECCSSCCCGGGGGSCC
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhc-----------------------cCccCCEEECcCCCCCcchhhhhc
Confidence             33444555555555555555555433322 33                       345555555666666556655553


Q ss_pred             CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc-cCCCCCCCEEEcCCCccccCCC
Q 038149          584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIP  651 (844)
Q Consensus       584 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  651 (844)
                        ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence              67888999999888 67777778899999999999998 45654 8889999999999999987655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.8e-42  Score=395.62  Aligned_cols=463  Identities=22%  Similarity=0.230  Sum_probs=275.5

Q ss_pred             CCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149          123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL  202 (844)
Q Consensus       123 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  202 (844)
                      .+...+++++++|++++ +|..+.  ++|++|++++|.++.  ++...|.++++|++|+|++|+++ .+++..|.++++|
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L  102 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL  102 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTC
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc--cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCC
Confidence            34455888888888876 444443  678888888887754  44467777777888888777777 4444567777777


Q ss_pred             cEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEc
Q 038149          203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL  281 (844)
Q Consensus       203 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  281 (844)
                      ++|+|++|.++. +|..  .+++|++|++++|++++ .+| ..++++++|++|++++|.+.+.    .+..+++|     
T Consensus       103 ~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L-----  169 (562)
T 3a79_B          103 EYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL-----  169 (562)
T ss_dssp             CEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCTT----TTGGGTTS-----
T ss_pred             CEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCch-HhhcccCcccEEecCCCccccC----chhhhhhc-----
Confidence            777777777773 4444  67777777777777763 233 5677777777777777776541    23333333     


Q ss_pred             cCccccCCCCCCCCCCcccEEEccCCCC--CcCcChhhhcCC-CCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCc-
Q 038149          282 SRLQVETENFPWLPKFQLKVLNLRHCNI--SGTIPRFLQYQY-DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF-  357 (844)
Q Consensus       282 ~~~~i~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~-  357 (844)
                                      +|++|++++|.+  ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|. 
T Consensus       170 ----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          170 ----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             ----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             ----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence                            234555555555  445555554433 111345555555555554444455555555555553 


Q ss_pred             ----ccccccCCCCCCCCCEEEccCCccccc----CChhhhcCCCCccEEEccCCcCCCCCCccc-----cccccCcEEe
Q 038149          358 ----LTGNLQLPNSKRNLPHLVISNNSFIGK----LPENFGLILPELVYLDMSQNSFEGSIPPSM-----GYMERLLFLD  424 (844)
Q Consensus       358 ----l~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~  424 (844)
                          +.+.......+++|+.+++.++.+.+.    ++....  .++|++|++++|.+++.+|..+     ..++.|+.++
T Consensus       234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~  311 (562)
T 3a79_B          234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH  311 (562)
T ss_dssp             THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred             ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence                111111112345555565555544332    122221  3478888888888877777766     6666666666


Q ss_pred             ccCCcCCCCCChhhhhc---CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCc
Q 038149          425 LSSNNFSRDLPKHFLTS---CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN  501 (844)
Q Consensus       425 Ls~n~l~~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  501 (844)
                      ++.+.+  .+|...+..   ..+|++|++++|.+.....  ...+++|++|++++|++++..|..+..+++|++|++++|
T Consensus       312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  387 (562)
T 3a79_B          312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN  387 (562)
T ss_dssp             EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred             ccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence            666666  455332222   2456666666666543211  134444555555555544444444444444444444444


Q ss_pred             ccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC-C-CCCCCcEEECCCCccccccC
Q 038149          502 MLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS-S-NHSSLRYLFPHNNSLSGTIP  579 (844)
Q Consensus       502 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~p  579 (844)
                      ++++..                      .+|..+..+++|++|++++|++.+.+|.. + .+++|+.|++++|++++.+|
T Consensus       388 ~l~~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          388 GLKNFF----------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCCBTT----------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             CcCCcc----------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence            444311                      12334455555555555555555433322 2 45666666666666666665


Q ss_pred             ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc-cCCCCCCCEEEcCCCccccCCCc
Q 038149          580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIPS  652 (844)
Q Consensus       580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~  652 (844)
                      ..+.  ++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..|.
T Consensus       446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            5543  67888899988888 56776678889999999999998 55655 88899999999999999876654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.2e-41  Score=377.26  Aligned_cols=375  Identities=19%  Similarity=0.214  Sum_probs=321.9

Q ss_pred             EEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcC
Q 038149          373 HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH  452 (844)
Q Consensus       373 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  452 (844)
                      .++.+++.+. .+|. +   .++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555554 5665 2   478999999999998888888999999999999999988778777778899999999999


Q ss_pred             cccCCcCCccccCCCCcCEecCCCCcCccccccc--ccCCCCCcEEEccCcccCcCCChh-hhcCCCCCEEeCCCCcccc
Q 038149          453 NYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVG--LLNASSLYVLDVSNNMLSGQLPRW-IGKFSNLDVLLMSRNSFEG  529 (844)
Q Consensus       453 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~~  529 (844)
                      |++++..|..+.++++|++|++++|++++..+..  +..+++|++|++++|++++..|.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9999888889999999999999999998765554  888999999999999999887776 8899999999999999998


Q ss_pred             cCCccccCC--CCCCEEecCCCcCcccCCCC---------CCCCCCcEEECCCCccccccCccccCC---CCCCEEECCC
Q 038149          530 DVSVQLSNL--EVARILDISENKLYGPLEFS---------SNHSSLRYLFPHNNSLSGTIPNALLQS---SQLTTLDLRD  595 (844)
Q Consensus       530 ~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~Ls~  595 (844)
                      ..+..+..+  ..|+.|++++|.+.+..+..         ..+++|+.|++++|++++..|..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            888888766  68899999999987755442         245789999999999998888877655   8899999999


Q ss_pred             CcCCcc----------cchhhhC--CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccccc
Q 038149          596 NEFSGN----------IAHLINE--DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK  663 (844)
Q Consensus       596 N~l~~~----------~~~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~  663 (844)
                      |.+.+.          .+..+..  .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..|++       
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------  321 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-------  321 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence            865542          1222222  368999999999999999999999999999999999999888877765       


Q ss_pred             CcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccc
Q 038149          664 GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS  743 (844)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  743 (844)
                                                               +++|++|+|++|++++..|..++.+++|++|+|++|+++
T Consensus       322 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          322 -----------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence                                                     457899999999999888999999999999999999999


Q ss_pred             cccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcC
Q 038149          744 GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQF  800 (844)
Q Consensus       744 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  800 (844)
                      +..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            999999999999999999999999877778899999999999999999999965433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-41  Score=390.69  Aligned_cols=435  Identities=19%  Similarity=0.201  Sum_probs=327.1

Q ss_pred             CcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEc
Q 038149          297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI  376 (844)
Q Consensus       297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  376 (844)
                      .+|++|++++|.+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|.++.....  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence            3566777777777776777777788888888888877766665554 677777777777777754332  6788888888


Q ss_pred             cCCcccc-cCChhhhcCCCCccEEEccCCcCCCCCCccccccccC--cEEeccCCcC--CCCCChhhhhcCC-CCcEEeC
Q 038149          377 SNNSFIG-KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERL--LFLDLSSNNF--SRDLPKHFLTSCV-SLEFMNL  450 (844)
Q Consensus       377 ~~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L~L  450 (844)
                      ++|.+.+ .+|..+.. +++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+ ..+. ..-.+++
T Consensus       129 s~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l  203 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVF  203 (562)
T ss_dssp             CSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEE
T ss_pred             CCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc-cccCcceEEEEe
Confidence            8888775 34455554 78888888888888753   34555555  8888888888  66666543 2322 1225577


Q ss_pred             cCcccCCcCCc-cccCCCCcCEecCCCCcC-----cccccccccCCCCCcEEEccCcccCcC----CChhhhcCCCCCEE
Q 038149          451 SHNYFDGQIFP-KYMNLAKLVFLFLNDNQF-----TGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVL  520 (844)
Q Consensus       451 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L  520 (844)
                      ++|.+.+.++. .+..+++|+.+++++|+.     .+ ....+..++.|+.++++++.+.+.    ++..+ ..++|++|
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L  281 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL  281 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence            77877765443 456778888888888752     22 223466778888888888777642    12222 24589999


Q ss_pred             eCCCCcccccCCccc-----cCCCCCCEEecCCCcCcccCCCCC-----CCCCCcEEECCCCccccccCccccCCCCCCE
Q 038149          521 LMSRNSFEGDVSVQL-----SNLEVARILDISENKLYGPLEFSS-----NHSSLRYLFPHNNSLSGTIPNALLQSSQLTT  590 (844)
Q Consensus       521 ~ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  590 (844)
                      ++++|.+++.+|..+     ..++.|+.++++.+.+  .+|...     ...+|+.|++++|.+....  ....+++|++
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~  357 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence            999999988888877     6677777777777766  333211     2357999999999876332  1267889999


Q ss_pred             EECCCCcCCcccchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEcCCCccccCCCch-hhccccccccCccc
Q 038149          591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG--NIPEPLCHLRKLAIVDISYNTLNGPIPSC-FTNISLWMEKGNYY  667 (844)
Q Consensus       591 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~~~~~~~~~  667 (844)
                      |++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|.. +..           
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-----------  426 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-----------  426 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------
Confidence            9999999999889999999999999999999986  34567899999999999999998766654 322           


Q ss_pred             ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149          668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP  747 (844)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  747 (844)
                                                           +++|++|+|++|++++.+|..+.  ++|++|+|++|+++ .+|
T Consensus       427 -------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip  466 (562)
T 3a79_B          427 -------------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP  466 (562)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred             -------------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence                                                 46789999999999988887765  78999999999999 788


Q ss_pred             cccccccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCCCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      ..+..+++|+.|||++|+++ .+|.. +..+++|++|++++|++.|.+|..
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            88889999999999999999 56766 999999999999999999987743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-39  Score=362.40  Aligned_cols=403  Identities=23%  Similarity=0.253  Sum_probs=191.8

Q ss_pred             CCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCC-------------cEEEcCCCcccccc
Q 038149          296 KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKL-------------EIMFLFNNFLTGNL  362 (844)
Q Consensus       296 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L-------------~~L~l~~n~l~~~~  362 (844)
                      ..+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..+. .+.+|             +.+++++|.+++..
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            34678888888888 67888888888888888888888888887654 45543             66666666666532


Q ss_pred             cCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcC
Q 038149          363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC  442 (844)
Q Consensus       363 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  442 (844)
                      .   ..++|++|++++|.+.+ +|..    +++|++|++++|++++ ++..   .++|++|++++|++++ +|.  +..+
T Consensus        88 ~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~l  152 (454)
T 1jl5_A           88 E---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQNS  152 (454)
T ss_dssp             S---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred             C---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCCC
Confidence            2   23566666666666664 4432    3566666666666653 2221   1466666666666653 552  4566


Q ss_pred             CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeC
Q 038149          443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLM  522 (844)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  522 (844)
                      ++|++|++++|++++ +|..   .++|++|++++|++++ +| .+..+++|++|++++|++++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            666666666666654 2322   2366666666666664 34 45666666666666666664 3322   245666666


Q ss_pred             CCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149          523 SRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI  602 (844)
Q Consensus       523 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  602 (844)
                      ++|.+. .+| .+..+++|++|++++|++.+. |.  .+++|+.|++++|++++ +|..   .++|++|++++|++++. 
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-  292 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-  292 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-
Confidence            666665 444 356666666666666666542 22  23566666666666653 3432   25566666666666541 


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCC-CCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccc
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHL-RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR  681 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  681 (844)
                      |..   .++|++|++++|++++ ++    .+ ++|+.|++++|++++ +|..                            
T Consensus       293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~----------------------------  335 (454)
T 1jl5_A          293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL----------------------------  335 (454)
T ss_dssp             SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred             cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence            111   1456666666666653 12    12 356666666666653 3322                            


Q ss_pred             ccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCccccc--ccCcccccccCCCEE
Q 038149          682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG--SIPRSFSNLKMTESM  759 (844)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L  759 (844)
                                             +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++.+      
T Consensus       336 -----------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------  382 (454)
T 1jl5_A          336 -----------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------  382 (454)
T ss_dssp             -----------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred             -----------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence                                   234556666666666 4554   35666666666666665  555554432      


Q ss_pred             eCCCCcccccCCccccCCCCCCEEEccCCcccc--cCCCCCcCCCcCccccCCCCCCc
Q 038149          760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG--TVPNKGQFANFDESNYRGNPYLC  815 (844)
Q Consensus       760 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~~~~~~~~gn~~lc  815 (844)
                        +.|.+.|.+|..   +++|++|++++|+++|  .+|..     +....+.+|..-|
T Consensus       383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s-----l~~L~~~~~~~~~  430 (454)
T 1jl5_A          383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES-----VEDLRMNSERVVD  430 (454)
T ss_dssp             --ECCC----------------------------------------------------
T ss_pred             --hhcccccccccc---cCcCCEEECCCCcCCccccchhh-----HhheeCcCcccCC
Confidence              235555555543   3788999999999988  67753     3444555554433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.4e-40  Score=365.14  Aligned_cols=301  Identities=23%  Similarity=0.330  Sum_probs=165.0

Q ss_pred             CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149          394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF  473 (844)
Q Consensus       394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (844)
                      ++|++|++++|++++ +| .++.+++|++|++++|++++ +|..    .++|++|++++|++++ +| .+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            456666666666653 44 36666666666666666653 4432    2466666666666665 23 466666677777


Q ss_pred             CCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcc
Q 038149          474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG  553 (844)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  553 (844)
                      +++|++++ +|..   .++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|..   .++|++|++++|++.+
T Consensus       202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             CCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence            77766664 3322   246777777777776 4553 6677777777777777764 3322   3667777777777765


Q ss_pred             cCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCC
Q 038149          554 PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL  633 (844)
Q Consensus       554 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  633 (844)
                       +|.  .+++|+.|++++|++++ +|..   .++|++|++++|++++ ++.   ..++|++|++++|++++ +|..   +
T Consensus       272 -l~~--~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~  336 (454)
T 1jl5_A          272 -LPE--LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---P  336 (454)
T ss_dssp             -CCC--CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             -cCc--ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---C
Confidence             332  23677888888887775 2221   2578888888888875 221   12588889999988885 6654   5


Q ss_pred             CCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEe
Q 038149          634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDL  713 (844)
Q Consensus       634 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  713 (844)
                      ++|+.|++++|+++ .+|. +                                                  +++|++|++
T Consensus       337 ~~L~~L~L~~N~l~-~lp~-~--------------------------------------------------l~~L~~L~L  364 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE-L--------------------------------------------------PQNLKQLHV  364 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC-C--------------------------------------------------CTTCCEEEC
T ss_pred             CcCCEEECCCCccc-cccc-h--------------------------------------------------hhhccEEEC
Confidence            78889999999887 3444 1                                                  356888999


Q ss_pred             ecCcccC--CCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc--cCCccccCCCCCCEEEccCCc
Q 038149          714 SSNELTG--DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG--QIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       714 s~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      ++|++++  .+|.+++.        |+.|++.|.+|..   +++|+.||+++|++++  .+|.+      ++.|.+.+|.
T Consensus       365 ~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~  427 (454)
T 1jl5_A          365 EYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSER  427 (454)
T ss_dssp             CSSCCSSCCCCCTTCCE--------EECCC--------------------------------------------------
T ss_pred             CCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcc
Confidence            9999998  77776654        3457788888874   5788999999999987  77754      4566788999


Q ss_pred             ccccCCCC
Q 038149          790 LSGTVPNK  797 (844)
Q Consensus       790 l~g~ip~~  797 (844)
                      +.+.+|..
T Consensus       428 ~~~~~~~~  435 (454)
T 1jl5_A          428 VVDPYEFA  435 (454)
T ss_dssp             --------
T ss_pred             cCCccccC
Confidence            98887754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-38  Score=358.48  Aligned_cols=370  Identities=20%  Similarity=0.248  Sum_probs=319.8

Q ss_pred             ccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcC-CccccCCCCcCEecC
Q 038149          396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI-FPKYMNLAKLVFLFL  474 (844)
Q Consensus       396 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L  474 (844)
                      -+.++.+++.++ .+|. +  .++|++|++++|.+++..|.. +..+++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346888888887 6666 3  378999999999998654544 589999999999999997554 567899999999999


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChh--hhcCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEecCCCcC
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW--IGKFSNLDVLLMSRNSFEGDVSVQ-LSNLEVARILDISENKL  551 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~--l~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~ls~n~l  551 (844)
                      ++|++++..|..+.++++|++|++++|++++.+|..  +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999999888999999999999999999999865554  899999999999999999887876 89999999999999999


Q ss_pred             cccCCCCC---CCCCCcEEECCCCccccccCcc--------ccCCCCCCEEECCCCcCCcccchhhhCC---CCCCEEEc
Q 038149          552 YGPLEFSS---NHSSLRYLFPHNNSLSGTIPNA--------LLQSSQLTTLDLRDNEFSGNIAHLINED---SNLRALLL  617 (844)
Q Consensus       552 ~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~L  617 (844)
                      .+..+..+   ....|+.|++++|.+.+..+..        +..+++|++|++++|++++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            98877765   3378999999999998655443        3366899999999999999888887654   89999999


Q ss_pred             cCCcccccC----------CcccC--CCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccc
Q 038149          618 RGNNLQGNI----------PEPLC--HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQ  685 (844)
Q Consensus       618 ~~N~l~~~~----------p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (844)
                      ++|.+.+..          +..+.  ..++|+.|++++|.+++.+|..++.                             
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------------------  297 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-----------------------------  297 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence            999765431          11222  2368999999999999888887765                             


Q ss_pred             ceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCc
Q 038149          686 RVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK  765 (844)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  765 (844)
                                         +++|++|+|++|++++..|..++.+++|++|+|++|.+++..|..|+++++|++|||++|+
T Consensus       298 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  358 (455)
T 3v47_A          298 -------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH  358 (455)
T ss_dssp             -------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred             -------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence                               4688999999999999889999999999999999999998889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149          766 LNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       766 l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      +++..|..+..+++|++|++++|++++..|.. ..+..+..+.+.|||..|.++
T Consensus       359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999999999999999999866554 677788899999999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-38  Score=334.96  Aligned_cols=295  Identities=25%  Similarity=0.366  Sum_probs=207.3

Q ss_pred             CCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCC--CCceEecCCC--CceEEEeeCcCcccCCCCCCCCC
Q 038149           10 SCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCT--WERIKCNATT--GRVMELSLDSAIQVDSDDVNDGF   85 (844)
Q Consensus        10 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gv~c~~~~--~~V~~l~L~~~~~~~~~~~~~~~   85 (844)
                      .|.++|++||++||+++.+    |   ..+++|..  ++|||.  |.||.|+..+  ++|+.|+|+++.+  .|..    
T Consensus         2 ~c~~~~~~aL~~~k~~~~~----~---~~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--~~~~----   66 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGN----P---TTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--PKPY----   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC----C---GGGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--SSCE----
T ss_pred             CCCHHHHHHHHHHHHhcCC----c---ccccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCc--cCCc----
Confidence            6999999999999999954    3   25899965  368998  9999998655  8999999998876  3310    


Q ss_pred             cccCCCCccCCCCCcEEeCCC-CCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCC
Q 038149           86 PIINMSLFVPFQELHVLDLSD-NRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEG  164 (844)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  164 (844)
                        .-+..|..+++|++|++++ |.+.+..+    ..++++++|++|++++|.+++.+|..|.++++|++|++++|.+ .+
T Consensus        67 --~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~  139 (313)
T 1ogq_A           67 --PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SG  139 (313)
T ss_dssp             --ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ES
T ss_pred             --ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-CC
Confidence              1134566777777777774 66666555    4566777777777777777766777777777777777777776 33


Q ss_pred             CcCcccccCCCCCCEEEccCCcCCCCCcccccCCCC-CCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChh
Q 038149          165 FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLK-NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS  243 (844)
Q Consensus       165 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  243 (844)
                      .+| ..+.++++|++|++++|++++.++. .+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++.+| .
T Consensus       140 ~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~  215 (313)
T 1ogq_A          140 TLP-PSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-V  215 (313)
T ss_dssp             CCC-GGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-G
T ss_pred             cCC-hHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-H
Confidence            344 4566677777777777776655443 466665 677777777777666666666665 7777777777665444 6


Q ss_pred             hhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCC
Q 038149          244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF  323 (844)
Q Consensus       244 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  323 (844)
                      .+.++++|++|++++|.+++.++.  +.                       ..++|++|++++|++++.+|.++..+++|
T Consensus       216 ~~~~l~~L~~L~L~~N~l~~~~~~--~~-----------------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  270 (313)
T 1ogq_A          216 LFGSDKNTQKIHLAKNSLAFDLGK--VG-----------------------LSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCBGGG--CC-----------------------CCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECCCCceeeecCc--cc-----------------------ccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence            666677777777777666554432  22                       23456677778888888888888888889


Q ss_pred             CEEEccCCcccccCchhHhhcCCCCcEEEcCCCc
Q 038149          324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF  357 (844)
Q Consensus       324 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~  357 (844)
                      ++|++++|++++.+|..  ..+++|+.+++.+|.
T Consensus       271 ~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          271 HSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             CEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            99999988888888865  356666666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=347.46  Aligned_cols=326  Identities=18%  Similarity=0.112  Sum_probs=213.3

Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      +++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            44455555555544444445555555555555555554445555555555555555555554444445555555555555


Q ss_pred             CCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149          524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI  602 (844)
Q Consensus       524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  602 (844)
                      +|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            555555555555555555555555555555444433 5556666666666666555566777778888888888877776


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccc
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRE  682 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  682 (844)
                      +..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+..                          
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------------------------  246 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--------------------------  246 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT--------------------------
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC--------------------------
Confidence            777777788888888887777777776666677888888888877433334443                          


Q ss_pred             cccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCC
Q 038149          683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS  762 (844)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  762 (844)
                                            +++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus       247 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          247 ----------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             ----------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             ----------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence                                  4567788888888887777778888888888888888888778888888888888888


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCc
Q 038149          763 YNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGP  817 (844)
Q Consensus       763 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~  817 (844)
                      +|++++..+..+..+++|+.|++++|++.+..+....+.......+.|+...|..
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence            8888876666778888888888888888776543322233333455666666643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.2e-37  Score=342.09  Aligned_cols=366  Identities=19%  Similarity=0.167  Sum_probs=194.3

Q ss_pred             CCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCC
Q 038149          307 CNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLP  386 (844)
Q Consensus       307 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p  386 (844)
                      +...+..+..++.+++|++|++++|.+++. | .+ ..+++|+.|++++|.+++..  ...                   
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~-------------------   83 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GI-EKLTGLTKLICTSNNITTLD--LSQ-------------------   83 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TG-GGCTTCSEEECCSSCCSCCC--CTT-------------------
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCcccC-h-hh-cccCCCCEEEccCCcCCeEc--ccc-------------------
Confidence            334444555677777888888888877753 4 22 35566666655555555421  223                   


Q ss_pred             hhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCC
Q 038149          387 ENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNL  466 (844)
Q Consensus       387 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  466 (844)
                            +++|++|++++|.+++. +  ++.+++|++|++++|++++ +|   +..+++|++|++++|++++.   .+..+
T Consensus        84 ------l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l  147 (457)
T 3bz5_A           84 ------NTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHN  147 (457)
T ss_dssp             ------CTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTC
T ss_pred             ------CCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccC
Confidence                  34444444444444432 1  4444444444444444432 22   23444444444444444442   13444


Q ss_pred             CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149          467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI  546 (844)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l  546 (844)
                      ++|++|++++|...+.+  .+..+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++
T Consensus       148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred             CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence            44455555444333222  24444555555555555543 22  44455555555555555433   2444555555555


Q ss_pred             CCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149          547 SENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI  626 (844)
Q Consensus       547 s~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  626 (844)
                      ++|++.+ +| ...+++|+.|++++|++++..   +..+++|+.|++++|              +|+.|++++|++.+.+
T Consensus       220 s~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          220 SSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             CSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred             cCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence            5555544 22 224455555555555555432   234455555555543              2344555555555554


Q ss_pred             CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149          627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK  706 (844)
Q Consensus       627 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  706 (844)
                      |  ++.+++|+.|++++|++.+.+|....+++.                                        +.....+
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~----------------------------------------L~l~~~~  318 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITE----------------------------------------LDLSQNP  318 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC----------------------------------------CCCTTCT
T ss_pred             c--ccccccCCEEECCCCcccceeccCCCcceE----------------------------------------echhhcc
Confidence            4  344555666666666555555432222110                                        0111134


Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      +|++|++++|+++| ++  ++.+++|++|++++|++++        ++.|+.|++++|+++|.     ..+..|..++++
T Consensus       319 ~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~  382 (457)
T 3bz5_A          319 KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT  382 (457)
T ss_dssp             TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred             cCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence            67778888888886 33  7778888888888888875        24566677888888776     244566777888


Q ss_pred             CCcccccCCCC
Q 038149          787 YNNLSGTVPNK  797 (844)
Q Consensus       787 ~N~l~g~ip~~  797 (844)
                      +|+++|.||..
T Consensus       383 ~N~l~g~ip~~  393 (457)
T 3bz5_A          383 NNSLTIAVSPD  393 (457)
T ss_dssp             TTBEEEECCTT
T ss_pred             cCcEEEEcChh
Confidence            88888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=332.42  Aligned_cols=358  Identities=20%  Similarity=0.176  Sum_probs=249.5

Q ss_pred             CccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccc
Q 038149           92 LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGL  171 (844)
Q Consensus        92 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l  171 (844)
                      .+..+++|++|++++|.+++.+      .++.+++|++|++++|.+++. |  ++.+++|++|++++|.++.  ++   +
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--~~---~  102 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT------GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--LD---V  102 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT------TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--CC---C
T ss_pred             ChhHcCCCCEEEccCCCcccCh------hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--ee---c
Confidence            5667888999999999888752      467889999999999998775 3  8889999999999998854  32   7


Q ss_pred             cCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCC
Q 038149          172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL  251 (844)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  251 (844)
                      +++++|++|++++|++++ ++   ++.+++|++|++++|.+++.   .++++++|++|++++|+..+.++   +..+++|
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L  172 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQL  172 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTC
T ss_pred             CCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcC
Confidence            788999999999999884 43   78889999999999998874   37888999999999996655664   7788899


Q ss_pred             CeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCC
Q 038149          252 EYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN  331 (844)
Q Consensus       252 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  331 (844)
                      ++|++++|.+++ +|   +..+++|+.|++++|.++..  .+..+++|++|++++|++++ +|  +..+++|++|++++|
T Consensus       173 ~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          173 TTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred             CEEECCCCccce-ec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence            999999998876 34   67778888888888877765  34455677888888888776 44  677778888888888


Q ss_pred             cccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCC
Q 038149          332 NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP  411 (844)
Q Consensus       332 ~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~  411 (844)
                      ++++..+    ..+++|+.++++.|             +|+.|++++|.+.+.+|..   .+++|++|++++|...+.+|
T Consensus       244 ~l~~~~~----~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~~~---~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          244 PLTELDV----STLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CCSCCCC----TTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEECT---TCTTCCCCCCTTCTTCCEEE
T ss_pred             cCCCcCH----HHCCCCCEEeccCC-------------CCCEEECCCCccCCccccc---ccccCCEEECCCCcccceec
Confidence            7776432    25666666666554             3445666666666666532   35666667776666555544


Q ss_pred             ccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCC
Q 038149          412 PSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNAS  491 (844)
Q Consensus       412 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  491 (844)
                      .   ..++|+.|++++|              ++|++|++++|++++.   .+..+++|+.|++++|++++        ++
T Consensus       304 ~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~  355 (457)
T 3bz5_A          304 C---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FS  355 (457)
T ss_dssp             C---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CT
T ss_pred             c---CCCcceEechhhc--------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cc
Confidence            3   2233444433332              4566666666666653   25566666666666666653        23


Q ss_pred             CCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccc
Q 038149          492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL  535 (844)
Q Consensus       492 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l  535 (844)
                      .|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+
T Consensus       356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            455555666666543     234445556666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4e-35  Score=330.90  Aligned_cols=345  Identities=21%  Similarity=0.256  Sum_probs=244.5

Q ss_pred             CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEE
Q 038149          369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM  448 (844)
Q Consensus       369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  448 (844)
                      ++++.|++.++.+. .+|. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++.  +..+++|++|
T Consensus        46 ~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred             ccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc-Chh--hcCCCCCCEE
Confidence            34555555555544 3443 22 366777777777776643 32 6677777777777777753 333  4667777777


Q ss_pred             eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149          449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  528 (844)
                      ++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..  .+..+++|++|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            777777665432  66777777777777776643 2 36667777777775 4444332  2677777777777777766


Q ss_pred             ccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhC
Q 038149          529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE  608 (844)
Q Consensus       529 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~  608 (844)
                      +.  ..+..+++|++|++++|.+.+..+ ...+++|+.|++++|++++.  ..+..+++|++|++++|.+++..+  +..
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            43  236677777777777777766544 33567788888888877743  357788888888888888886655  778


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccccee
Q 038149          609 DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE  688 (844)
Q Consensus       609 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (844)
                      +++|++|++++|++++..+  +..+++|+.|++++|++++..|  ++.                                
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------------------  307 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN--------------------------------  307 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG--------------------------------
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC--------------------------------
Confidence            8888888888888886543  7788888888888888875433  222                                


Q ss_pred             eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                                      +++|+.|+|++|++++..|  ++.+++|+.|++++|.+++.  ..++++++|+.|++++|++++
T Consensus       308 ----------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          308 ----------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             ----------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             ----------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence                            5678889999998887665  77888999999999988864  468888999999999999988


Q ss_pred             cCCccccCCCCCCEEEccCCccccc
Q 038149          769 QIPPELGELSFLAIFNVSYNNLSGT  793 (844)
Q Consensus       769 ~ip~~l~~l~~L~~L~ls~N~l~g~  793 (844)
                      .+|  +..+++|+.|++++|++++.
T Consensus       368 ~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          368 LTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cch--hhcCCCCCEEeccCCcccCC
Confidence            776  78888999999999988873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.7e-35  Score=327.80  Aligned_cols=345  Identities=24%  Similarity=0.312  Sum_probs=298.0

Q ss_pred             CCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEe
Q 038149          393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL  472 (844)
Q Consensus       393 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  472 (844)
                      +++++.|+++++.+. .+| .+..+++|++|++++|.+++ ++.  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            578999999999998 455 48899999999999999974 554  6899999999999999987654  8999999999


Q ss_pred             cCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCc
Q 038149          473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY  552 (844)
Q Consensus       473 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  552 (844)
                      ++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|+++ |.+.+..  .+..+++|++|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            999999997644  8899999999999999986 44 58999999999996 5555443  3889999999999999987


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                      +. +....+++|++|++++|.+++..|  +..+++|++|++++|++++.  ..+..+++|++|++++|++++..|  +..
T Consensus       191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          191 DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            64 334488999999999999997665  78899999999999999864  468899999999999999997655  889


Q ss_pred             CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149          633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD  712 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  712 (844)
                      +++|+.|++++|++++..|  +..                                                +++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~------------------------------------------------l~~L~~L~  293 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAG------------------------------------------------LTALTNLE  293 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTT------------------------------------------------CTTCSEEE
T ss_pred             CCCCCEEECCCCccCcccc--ccC------------------------------------------------CCccCeEE
Confidence            9999999999999986443  332                                                56899999


Q ss_pred             eecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          713 LSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       713 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      +++|++++..|  ++.+++|+.|+|++|++++..|  ++.+++|+.|++++|++++.  ..+..+++|++|++++|++++
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            99999996544  8899999999999999998776  88999999999999999975  578999999999999999999


Q ss_pred             cCCCCCcCCCcCccccCCCCCCc
Q 038149          793 TVPNKGQFANFDESNYRGNPYLC  815 (844)
Q Consensus       793 ~ip~~~~~~~~~~~~~~gn~~lc  815 (844)
                      .+| ...+..+..+.+.+|+...
T Consensus       368 ~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          368 LTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CGG-GTTCTTCCEEECCCEEEEC
T ss_pred             cch-hhcCCCCCEEeccCCcccC
Confidence            988 5667778888888887655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.6e-36  Score=317.64  Aligned_cols=260  Identities=32%  Similarity=0.520  Sum_probs=226.9

Q ss_pred             CCCcEEEccCcccCc--CCChhhhcCCCCCEEeCCC-CcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEE
Q 038149          491 SSLYVLDVSNNMLSG--QLPRWIGKFSNLDVLLMSR-NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYL  567 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  567 (844)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.                 
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----------------  112 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----------------  112 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence            568888888888887  7788888888888888884 77777777777777666666666555                 


Q ss_pred             ECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC-CCCEEEcCCCcc
Q 038149          568 FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR-KLAIVDISYNTL  646 (844)
Q Consensus       568 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l  646 (844)
                            +++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++
T Consensus       113 ------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          113 ------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence                  4456777788888899999999998888888898999999999999999988999999988 899999999999


Q ss_pred             ccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149          647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI  726 (844)
Q Consensus       647 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  726 (844)
                      ++.+|..+..                                                +. |++|+|++|++++.+|..+
T Consensus       187 ~~~~~~~~~~------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          187 TGKIPPTFAN------------------------------------------------LN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             EEECCGGGGG------------------------------------------------CC-CSEEECCSSEEEECCGGGC
T ss_pred             eccCChHHhC------------------------------------------------Cc-ccEEECcCCcccCcCCHHH
Confidence            9888888765                                                22 7889999999999999999


Q ss_pred             hhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCcc
Q 038149          727 GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES  806 (844)
Q Consensus       727 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~  806 (844)
                      +.+++|++|+|++|.+++.+|. +..+++|++|+|++|+++|.+|..+..+++|++|++++|+++|.+|..+++..+...
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l  296 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence            9999999999999999987776 889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcCccCCCCCC
Q 038149          807 NYRGNPYLCGPAVRKNCS  824 (844)
Q Consensus       807 ~~~gn~~lc~~~~~~~c~  824 (844)
                      .+.|||++||.|+. .|.
T Consensus       297 ~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          297 AYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             GTCSSSEEESTTSS-CCC
T ss_pred             HhcCCCCccCCCCC-CCC
Confidence            99999999998875 573

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-34  Score=319.23  Aligned_cols=334  Identities=21%  Similarity=0.175  Sum_probs=190.0

Q ss_pred             ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEE
Q 038149          418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD  497 (844)
Q Consensus       418 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  497 (844)
                      ++++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34444444444442 34444444444444444444444444444444444455555555544444444444455555555


Q ss_pred             ccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc
Q 038149          498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT  577 (844)
Q Consensus       498 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  577 (844)
                      +++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..  ...+++|+.|++++|.+++ 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~-  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence            5555554332233344555555555555554444444555555555555555544321  1134455555555555542 


Q ss_pred             cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149          578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI  657 (844)
Q Consensus       578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  657 (844)
                          +...++|++|++++|++... |..  ..++|++|++++|++++.  ..+..+++|+.|++++|.+++..|..|.. 
T Consensus       201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-  270 (390)
T 3o6n_A          201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-  270 (390)
T ss_dssp             ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred             ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence                12234566666666666533 221  235666666666666643  45666667777777777766655655544 


Q ss_pred             ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec
Q 038149          658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL  737 (844)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  737 (844)
                                                                     +++|++|+|++|+++ .+|..+..+++|++|+|
T Consensus       271 -----------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          271 -----------------------------------------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             -----------------------------------------------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred             -----------------------------------------------cccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence                                                           345667777777776 35555667777888888


Q ss_pred             cCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCc
Q 038149          738 SNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGP  817 (844)
Q Consensus       738 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~  817 (844)
                      ++|+++ .+|..++.+++|+.|++++|+++.. |  +..+++|++|++++|++.+... ...+..+....+.+++..|..
T Consensus       303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred             CCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence            888777 5666677778888888888887743 3  6677888888888888877432 234555666677888888875


Q ss_pred             c
Q 038149          818 A  818 (844)
Q Consensus       818 ~  818 (844)
                      +
T Consensus       378 ~  378 (390)
T 3o6n_A          378 D  378 (390)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=327.13  Aligned_cols=261  Identities=19%  Similarity=0.162  Sum_probs=124.1

Q ss_pred             CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEE
Q 038149          369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM  448 (844)
Q Consensus       369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  448 (844)
                      +++++|++++|.+.+..+..+. .+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            3445555555554433333332 2455555555555555444444555555555555555543 3443333444555555


Q ss_pred             eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149          449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  528 (844)
                      ++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            55555554444444444555555555555544444444444455555555555444433334444444555555544444


Q ss_pred             ccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhC
Q 038149          529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE  608 (844)
Q Consensus       529 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~  608 (844)
                      +..+..+..+++|++|++++|..                       .+.+|.......+|++|++++|++++..+..+..
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPY-----------------------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTT-----------------------CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             EeChhhcccCcccceeeCCCCcc-----------------------ccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence            44444444444444444444443                       3334433333344555555555555333344445


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchh
Q 038149          609 DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCF  654 (844)
Q Consensus       609 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  654 (844)
                      +++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..|
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            5555555555555554444444555555555555555544444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-34  Score=335.83  Aligned_cols=335  Identities=21%  Similarity=0.181  Sum_probs=218.1

Q ss_pred             cccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEE
Q 038149          417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL  496 (844)
Q Consensus       417 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (844)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            344555555555553 4555545555555555555555555555555555556666666665555555555555666666


Q ss_pred             EccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc
Q 038149          497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG  576 (844)
Q Consensus       497 ~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  576 (844)
                      ++++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.+.+..  ...+++|+.|++++|.+++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence            66666665444444555666666666666665555555666666666666666555431  1145566666666666553


Q ss_pred             ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149          577 TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN  656 (844)
Q Consensus       577 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  656 (844)
                           +...++|+.|++++|.+....+. +  .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|+.
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                 23345677777777777643322 2  2567777777777775  356777777888888888777777766655


Q ss_pred             cccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEe
Q 038149          657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALN  736 (844)
Q Consensus       657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  736 (844)
                                                                      +++|+.|+|++|++++ +|..++.+++|+.|+
T Consensus       277 ------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          277 ------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLD  307 (597)
T ss_dssp             ------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred             ------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence                                                            3467778888888874 566677788888888


Q ss_pred             ccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcC
Q 038149          737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG  816 (844)
Q Consensus       737 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~  816 (844)
                      |++|.++ .+|..++.+++|+.|+|++|.+++. |  +..+++|+.|++++|+++|..+. ..+..+....+.+++..|+
T Consensus       308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~  382 (597)
T 3oja_B          308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK  382 (597)
T ss_dssp             CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCC
T ss_pred             CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCC
Confidence            8888888 6777788888888888888888754 3  67778899999999999876432 3456667777889999997


Q ss_pred             cc
Q 038149          817 PA  818 (844)
Q Consensus       817 ~~  818 (844)
                      .+
T Consensus       383 ~~  384 (597)
T 3oja_B          383 ID  384 (597)
T ss_dssp             TT
T ss_pred             cc
Confidence            63

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.7e-34  Score=312.56  Aligned_cols=311  Identities=23%  Similarity=0.273  Sum_probs=239.0

Q ss_pred             CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149           95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL  174 (844)
Q Consensus        95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  174 (844)
                      .++++++|+++++.+..+++    ..+..+++|++|++++|.+.+..+..|+.+++|++|+|++|.++.  +++..+.++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNV  116 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTC
T ss_pred             ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc--CCHHHhcCC
Confidence            46899999999999888766    557889999999999999998888899999999999999999954  555678999


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149          175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL  254 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  254 (844)
                      ++|++|++++|.++ .++...+.++++|++|++++|.+++..+..|+++++|++|++++|.++ .++   +..+++|++|
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L  191 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHA  191 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEE
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---ccccccccee
Confidence            99999999999998 677766899999999999999999888888999999999999999998 454   6678999999


Q ss_pred             ecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccc
Q 038149          255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV  334 (844)
Q Consensus       255 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  334 (844)
                      ++++|.+.+      +...+.|+.|++++|.+.......  ..+|+.|++++|.+++.  .++..+++|++|++++|.+.
T Consensus       192 ~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          192 NVSYNLLST------LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             ECCSSCCSE------EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ecccccccc------cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence            999998864      344568899999998877654332  35788889988888764  57888888888888888888


Q ss_pred             ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccc
Q 038149          335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM  414 (844)
Q Consensus       335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  414 (844)
                      +..|..+. .+++|+.|++++|.+++.......                         +++|++|++++|+++ .+|..+
T Consensus       262 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------------------------l~~L~~L~L~~n~l~-~~~~~~  314 (390)
T 3o6n_A          262 KIMYHPFV-KMQRLERLYISNNRLVALNLYGQP-------------------------IPTLKVLDLSHNHLL-HVERNQ  314 (390)
T ss_dssp             EEESGGGT-TCSSCCEEECCSSCCCEEECSSSC-------------------------CTTCCEEECCSSCCC-CCGGGH
T ss_pred             CcChhHcc-ccccCCEEECCCCcCcccCcccCC-------------------------CCCCCEEECCCCcce-ecCccc
Confidence            77666554 566666666666655543222222                         556666666666665 445555


Q ss_pred             cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149          415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG  457 (844)
Q Consensus       415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  457 (844)
                      ..+++|++|++++|.++ .++   +..+++|++|++++|.+..
T Consensus       315 ~~l~~L~~L~L~~N~i~-~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          315 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             HHHTTCSEEECCSSCCC-CCC---CCTTCCCSEEECCSSCEEH
T ss_pred             cccCcCCEEECCCCccc-eeC---chhhccCCEEEcCCCCccc
Confidence            56666666666666664 333   2455666666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-32  Score=296.51  Aligned_cols=304  Identities=20%  Similarity=0.312  Sum_probs=187.1

Q ss_pred             CCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEe
Q 038149          393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL  472 (844)
Q Consensus       393 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  472 (844)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  +.+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4566666666666652 33 3556666666666666664 3333  45566666666666655542  245555555555


Q ss_pred             cCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCc
Q 038149          473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY  552 (844)
Q Consensus       473 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  552 (844)
                      ++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..               
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~---------------  175 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IAN---------------  175 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGG---------------
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hcc---------------
Confidence            555555553322  4455555555555554332222 24555555555555555443222  334               


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                              +++|+.|++++|.+++. +. +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..
T Consensus       176 --------l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~  241 (347)
T 4fmz_A          176 --------LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN  241 (347)
T ss_dssp             --------CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             --------CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence                    44555555555555432 22 6667777777777777775444  6677777777777777774433  677


Q ss_pred             CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149          633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD  712 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  712 (844)
                      +++|+.|++++|.+++.  ..+..                                                +++|++|+
T Consensus       242 l~~L~~L~l~~n~l~~~--~~~~~------------------------------------------------l~~L~~L~  271 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI--NAVKD------------------------------------------------LTKLKMLN  271 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTT------------------------------------------------CTTCCEEE
T ss_pred             CCCCCEEECCCCccCCC--hhHhc------------------------------------------------CCCcCEEE
Confidence            77778888887777642  12221                                                45677888


Q ss_pred             eecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccc
Q 038149          713 LSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS  791 (844)
Q Consensus       713 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  791 (844)
                      +++|++++ +| .+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888874 33 47778888888888888888788888888888888888888886655  777888888888888774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-32  Score=318.12  Aligned_cols=311  Identities=22%  Similarity=0.257  Sum_probs=244.0

Q ss_pred             CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149           95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL  174 (844)
Q Consensus        95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  174 (844)
                      .+++++.|++++|.+..+++    ..+..+++|++|+|++|.+.+..+..|+.+++|++|+|++|.++.  +++..|+++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l  122 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNV  122 (597)
T ss_dssp             GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTC
T ss_pred             cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCC
Confidence            46789999999999988776    567889999999999999999888999999999999999999954  555778999


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149          175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL  254 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  254 (844)
                      ++|++|+|++|.++ .++...|.++++|++|+|++|.+++..|..|+++++|++|++++|.++ .++   +..+++|++|
T Consensus       123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L  197 (597)
T 3oja_B          123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHA  197 (597)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEE
T ss_pred             CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhh
Confidence            99999999999998 677777899999999999999999988989999999999999999998 455   5678999999


Q ss_pred             ecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccc
Q 038149          255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV  334 (844)
Q Consensus       255 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  334 (844)
                      ++++|.+.+      +.....|+.|++++|.+........  .+|+.|++++|.+++  +.++..+++|++|++++|.+.
T Consensus       198 ~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          198 NVSYNLLST------LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             ECCSSCCSE------EECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             hcccCcccc------ccCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence            999998874      4455689999999998775544332  478899999998886  467888889999999999888


Q ss_pred             ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccc
Q 038149          335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM  414 (844)
Q Consensus       335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  414 (844)
                      +..|..+. .+++|+.|++++|.+++.                        |..+. .+++|++|++++|.++ .+|..+
T Consensus       268 ~~~~~~~~-~l~~L~~L~Ls~N~l~~l------------------------~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~  320 (597)
T 3oja_B          268 KIMYHPFV-KMQRLERLYISNNRLVAL------------------------NLYGQ-PIPTLKVLDLSHNHLL-HVERNQ  320 (597)
T ss_dssp             EEESGGGT-TCSSCCEEECTTSCCCEE------------------------ECSSS-CCTTCCEEECCSSCCC-CCGGGH
T ss_pred             CCCHHHhc-CccCCCEEECCCCCCCCC------------------------Ccccc-cCCCCcEEECCCCCCC-ccCccc
Confidence            77776664 566666665555555443                        22222 2566666666666666 456666


Q ss_pred             cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149          415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG  457 (844)
Q Consensus       415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  457 (844)
                      ..+++|++|++++|.+++ ++   +..+++|+.|++++|.+.+
T Consensus       321 ~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          321 PQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             HHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCC
Confidence            666666777777666653 33   2455667777777776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.4e-32  Score=293.40  Aligned_cols=305  Identities=22%  Similarity=0.323  Sum_probs=238.7

Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE  446 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  446 (844)
                      .+++|++|+++++.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            5789999999999987 4554 33 48999999999999985 444 999999999999999997 4553  68999999


Q ss_pred             EEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149          447 FMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS  526 (844)
Q Consensus       447 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  526 (844)
                      +|++++|.+.+..+  +..+++|++|++++|......+. +..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            99999999987543  88999999999999976655444 8899999999999999986543  8899999999999999


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhh
Q 038149          527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLI  606 (844)
Q Consensus       527 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l  606 (844)
                      +.+..+  +..+++|+++++++|.+.+..                       +  +..+++|++|++++|++++..+  +
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDIT-----------------------P--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCG-----------------------G--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             cccccc--ccCCCccceeecccCCCCCCc-----------------------h--hhcCCcCCEEEccCCccCCCcc--h
Confidence            875443  666777777777776654322                       2  5566677777777777765433  6


Q ss_pred             hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccc
Q 038149          607 NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQR  686 (844)
Q Consensus       607 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (844)
                      ..+++|++|++++|++++.  ..+..+++|+.|++++|++++. | .+..                              
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~------------------------------  285 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN------------------------------  285 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG------------------------------
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC------------------------------
Confidence            6777777777777777643  4577778888888888877643 2 2222                              


Q ss_pred             eeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149          687 VEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL  766 (844)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  766 (844)
                                        +++|+.|++++|++++..|..++.+++|++|++++|.+++..|  ++.+++|+.||+++|.+
T Consensus       286 ------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          286 ------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence                              4678888999998888888888889999999999999987666  88889999999999987


Q ss_pred             c
Q 038149          767 N  767 (844)
Q Consensus       767 ~  767 (844)
                      +
T Consensus       346 ~  346 (347)
T 4fmz_A          346 K  346 (347)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=7.2e-35  Score=329.29  Aligned_cols=255  Identities=19%  Similarity=0.162  Sum_probs=146.1

Q ss_pred             CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhhcCC-
Q 038149          369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV-  443 (844)
Q Consensus       369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-  443 (844)
                      ++|++|++++|.+.......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4566777777776654444434457788888888888764    24556677788888888888876544555555555 


Q ss_pred             ---CCcEEeCcCcccCC----cCCccccCCCCcCEecCCCCcCcccccccc-----cCCCCCcEEEccCcccCcC----C
Q 038149          444 ---SLEFMNLSHNYFDG----QIFPKYMNLAKLVFLFLNDNQFTGRLEVGL-----LNASSLYVLDVSNNMLSGQ----L  507 (844)
Q Consensus       444 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~~~----~  507 (844)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               58888888887764    345666777777777777777764433322     1245677777777777653    2


Q ss_pred             ChhhhcCCCCCEEeCCCCcccccCCcccc-----CCCCCCEEecCCCcCccc----CCCCC-CCCCCcEEECCCCccccc
Q 038149          508 PRWIGKFSNLDVLLMSRNSFEGDVSVQLS-----NLEVARILDISENKLYGP----LEFSS-NHSSLRYLFPHNNSLSGT  577 (844)
Q Consensus       508 p~~l~~l~~L~~L~ls~n~l~~~~~~~l~-----~l~~L~~L~ls~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~  577 (844)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+...    ++..+ .+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45556667777777777776544333332     244566666666655432    11111 334444444444444332


Q ss_pred             c-----CccccCCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCCccc
Q 038149          578 I-----PNALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQ  623 (844)
Q Consensus       578 ~-----p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~  623 (844)
                      .     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|+++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            1     11111344444444444444432    3333444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8.8e-31  Score=281.67  Aligned_cols=290  Identities=20%  Similarity=0.221  Sum_probs=195.4

Q ss_pred             cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149          419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV  498 (844)
Q Consensus       419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  498 (844)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6788888888875 677644   357778888888777766667777777777777777777766777777777777777


Q ss_pred             cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149          499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI  578 (844)
Q Consensus       499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  578 (844)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..                     .+..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~  165 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFE  165 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCC
Confidence            777776 4454433  677777777777766555566666666666666666532                     1133


Q ss_pred             CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccc
Q 038149          579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS  658 (844)
Q Consensus       579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  658 (844)
                      +..+..+ +|++|++++|++++ +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..  
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--  239 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--  239 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred             cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence            4444444 56666666666654 343332  56777777777777666666777777777777777777655555543  


Q ss_pred             cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEecc
Q 038149          659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS  738 (844)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  738 (844)
                                                                    +++|++|+|++|+++ .+|..++.+++|++|+++
T Consensus       240 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          240 ----------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             ----------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence                                                          346677777777777 677777777778888888


Q ss_pred             CcccccccCcccccc------cCCCEEeCCCCccc--ccCCccccCCCCCCEEEccCCc
Q 038149          739 NNFLSGSIPRSFSNL------KMTESMDLSYNKLN--GQIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       739 ~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      +|++++..+..|...      .+|+.|++++|.+.  +..|..+..++.|+.+++++|+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888776666666543      56778888888776  5667777778888888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.4e-30  Score=278.26  Aligned_cols=294  Identities=23%  Similarity=0.265  Sum_probs=227.2

Q ss_pred             CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149          395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL  474 (844)
Q Consensus       395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (844)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++ ++...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5888888888887 6666553  688899999998864 54444578899999999999998888888889999999999


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc--ccCCccccCCCCCCEEecCCCcCc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE--GDVSVQLSNLEVARILDISENKLY  552 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~  552 (844)
                      ++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|.+.
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999988 4555443  89999999999999777777899999999999999986  3677778777 8999999999987


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                      +. |... .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus       186 ~l-~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          186 GI-PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             SC-CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             cc-Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            63 3322 368888899999888877788888889999999999988877778888889999999999888 77888888


Q ss_pred             CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149          633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD  712 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  712 (844)
                      +++|+.|++++|++++..+..|.....                                          ......++.|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------------------------------~~~~~~l~~L~  300 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGF------------------------------------------GVKRAYYNGIS  300 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSC------------------------------------------CSSSCCBSEEE
T ss_pred             CccCCEEECCCCCCCccChhHcccccc------------------------------------------ccccccccceE
Confidence            888888888888888655555543210                                          00023566677


Q ss_pred             eecCccc--CCCCchhhhccccCeEeccCcc
Q 038149          713 LSSNELT--GDIPSEIGYLGEIHALNLSNNF  741 (844)
Q Consensus       713 Ls~N~l~--g~ip~~l~~l~~L~~L~Ls~N~  741 (844)
                      +++|.+.  +..|..+..+++|+.|++++|+
T Consensus       301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             eecCcccccccCcccccccchhhhhhccccc
Confidence            7777765  4555566666666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-30  Score=277.24  Aligned_cols=291  Identities=20%  Similarity=0.234  Sum_probs=163.9

Q ss_pred             cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149          419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV  498 (844)
Q Consensus       419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  498 (844)
                      +++.++++++.++ .+|..+   .+.+++|++++|++++..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3455555555553 344322   244555555555555544445555555555555555555554555555555555555


Q ss_pred             cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149          499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI  578 (844)
Q Consensus       499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  578 (844)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..                     .+..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~  163 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------SGIE  163 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------------GGBC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---------------------cCcC
Confidence            555555 3333322  455555555555555444455555555555555554421                     1133


Q ss_pred             CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccc
Q 038149          579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS  658 (844)
Q Consensus       579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  658 (844)
                      +..+..+++|++|++++|+++. +|..+.  ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..  
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  238 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--  238 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--
T ss_pred             hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--
Confidence            4445555555555555555553 333222  56666666666666555666666666666666666666554444433  


Q ss_pred             cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEecc
Q 038149          659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS  738 (844)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  738 (844)
                                                                    +++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus       239 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          239 ----------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             ----------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ----------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence                                                          345666777777776 666667777777777777


Q ss_pred             CcccccccCccccc------ccCCCEEeCCCCcccc--cCCccccCCCCCCEEEccCCc
Q 038149          739 NNFLSGSIPRSFSN------LKMTESMDLSYNKLNG--QIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       739 ~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      +|++++..+..|..      ...|+.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            77777655555543      3667777777777653  455677777777777777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-29  Score=272.70  Aligned_cols=295  Identities=19%  Similarity=0.200  Sum_probs=210.3

Q ss_pred             CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149          395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL  474 (844)
Q Consensus       395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (844)
                      +++.++++++.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666666665 4454432  46677777777775 344434466777777777777777666677777777777777


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccc--cCCccccCCCCCCEEecCCCcCc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG--DVSVQLSNLEVARILDISENKLY  552 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~  552 (844)
                      ++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+.
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            777776 3444442  678888888888887767778888888888888888753  56677888888888888888876


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                      .. |... .++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus       185 ~l-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          185 TI-PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             SC-CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cC-Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            43 3222 278888888888888887888889999999999999998877778888999999999999988 78888888


Q ss_pred             CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149          633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD  712 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  712 (844)
                      +++|++|++++|++++..+..|.....                                          ......++.|+
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------------------------------~~~~~~l~~l~  299 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGY------------------------------------------NTKKASYSGVS  299 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSC------------------------------------------CTTSCCCSEEE
T ss_pred             CCCcCEEECCCCcCCccChhhcCCccc------------------------------------------ccccccccceE
Confidence            999999999999988655555543210                                          00124566777


Q ss_pred             eecCcccC--CCCchhhhccccCeEeccCcc
Q 038149          713 LSSNELTG--DIPSEIGYLGEIHALNLSNNF  741 (844)
Q Consensus       713 Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~  741 (844)
                      +++|.+..  ..|..+..+..++.++|++|+
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eecCcccccccCccccccccceeEEEecccC
Confidence            77777652  345566666667777776664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.6e-33  Score=315.38  Aligned_cols=391  Identities=16%  Similarity=0.112  Sum_probs=232.6

Q ss_pred             CcccEEEccCCCCCcCcCh-hhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEE
Q 038149          297 FQLKVLNLRHCNISGTIPR-FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV  375 (844)
Q Consensus       297 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  375 (844)
                      ++|++|++++|+++..... .+..+++|++|++++|++.+.....+..                    ....+++|++|+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~--------------------~l~~~~~L~~L~   62 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--------------------ALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH--------------------HHHTCTTCCEEE
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH--------------------HHHhCCCcCEEe
Confidence            3577888888887654433 3677788888888888776432211110                    011335566666


Q ss_pred             ccCCcccccCChhhhcCCC----CccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhh----cCC
Q 038149          376 ISNNSFIGKLPENFGLILP----ELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT----SCV  443 (844)
Q Consensus       376 l~~n~l~~~~p~~~~~~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~  443 (844)
                      +++|.+.+..+..+...++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..    ..+
T Consensus        63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            6666655544444444444    68888888888774    34667778888888888888876433333222    244


Q ss_pred             CCcEEeCcCcccCCcC----CccccCCCCcCEecCCCCcCccccccccc-----CCCCCcEEEccCcccCcC----CChh
Q 038149          444 SLEFMNLSHNYFDGQI----FPKYMNLAKLVFLFLNDNQFTGRLEVGLL-----NASSLYVLDVSNNMLSGQ----LPRW  510 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~p~~  510 (844)
                      +|++|++++|++++..    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            6777777777776532    33444556666677766666543333222     244666666666666542    3455


Q ss_pred             hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccc----cCccccCC
Q 038149          511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGT----IPNALLQS  585 (844)
Q Consensus       511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~p~~l~~l  585 (844)
                      +..+++|++|++++|.+.+.....+.                   +... .+++|++|++++|.+++.    ++..+..+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence            55566666666666655432111100                   0000 244555555556655543    56777788


Q ss_pred             CCCCEEECCCCcCCcccchhhhC-----CCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149          586 SQLTTLDLRDNEFSGNIAHLINE-----DSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLNGPIPSCFTN  656 (844)
Q Consensus       586 ~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  656 (844)
                      ++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|+.|++++|++++..+..+..
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  363 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  363 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence            89999999999887655544433     26888888888887754    4556666778888888888776544443332


Q ss_pred             cccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC----CCCchhhhcccc
Q 038149          657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG----DIPSEIGYLGEI  732 (844)
Q Consensus       657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L  732 (844)
                      .-                                          . ...+.|++|+|++|++++    .+|..+..+++|
T Consensus       364 ~l------------------------------------------~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          364 GL------------------------------------------G-QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             HH------------------------------------------T-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             HH------------------------------------------c-CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            10                                          0 002467777777777775    667777777777


Q ss_pred             CeEeccCcccccccCcccc-----cccCCCEEeCCCCccccc
Q 038149          733 HALNLSNNFLSGSIPRSFS-----NLKMTESMDLSYNKLNGQ  769 (844)
Q Consensus       733 ~~L~Ls~N~l~~~ip~~l~-----~l~~L~~L~Ls~N~l~~~  769 (844)
                      ++|++++|++++.-...+.     ...+|+.|++.++.....
T Consensus       401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            7777777777654222221     123455555555554433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=8.6e-31  Score=280.28  Aligned_cols=281  Identities=19%  Similarity=0.202  Sum_probs=172.5

Q ss_pred             CCCcHHHHHHHHHhhhcccccccccccccccCCCc---CCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCC
Q 038149            9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWV---DNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGF   85 (844)
Q Consensus         9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~---~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~   85 (844)
                      ..+..+|++||++||+++..   ++.  +.+++|.   .. ..++|.|.|+.|......+                    
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~---~~~--~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l--------------------   75 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNA---DRN--RWHSAWRQANSN-NPQIETRTGRALKATADLL--------------------   75 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHH---CCT--THHHHHHHHTTT-CTTSCCSHHHHHHHHHHHH--------------------
T ss_pred             cccCchHHHHHHHHHHhccC---Cch--hhhhhhcccccc-cccccccCCcchhhhHHHH--------------------
Confidence            34677899999999999854   233  5678894   22 4689999999996310000                    


Q ss_pred             cccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCC
Q 038149           86 PIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGF  165 (844)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  165 (844)
                            .....+++++|+|++|.+..++     ..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++  .
T Consensus        76 ------~~~~~~~l~~L~L~~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~  141 (328)
T 4fcg_A           76 ------EDATQPGRVALELRSVPLPQFP-----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--A  141 (328)
T ss_dssp             ------HHHTSTTCCEEEEESSCCSSCC-----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--C
T ss_pred             ------hcccccceeEEEccCCCchhcC-----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--c
Confidence                  0011234444555555544332     23444566666666666665 45555666666666666666654  2


Q ss_pred             cCcccccCCCCCCEEEccCCcCCCCCccc--------ccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCC
Q 038149          166 KHNKGLVNLRNLEVLDLSGNRITGSLIMQ--------GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS  237 (844)
Q Consensus       166 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  237 (844)
                      +| ..+.++++|++|++++|.+.+.++..        .+.++++|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus       142 lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          142 LP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             CC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             Cc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            44 34566666666666665555444432        1234677777777777776 56666777777777777777776


Q ss_pred             CCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhh
Q 038149          238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL  317 (844)
Q Consensus       238 ~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  317 (844)
                       .+| ..+..+++|++|++++|.+.+.+|. .+..++                       +|++|++++|.+.+.+|..+
T Consensus       220 -~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~-----------------------~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          220 -ALG-PAIHHLPKLEELDLRGCTALRNYPP-IFGGRA-----------------------PLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             -CCC-GGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC-----------------------CCCEEECTTCTTCCBCCTTG
T ss_pred             -cCc-hhhccCCCCCEEECcCCcchhhhHH-HhcCCC-----------------------CCCEEECCCCCchhhcchhh
Confidence             455 4566777777777777766665552 233333                       34455556666666677777


Q ss_pred             hcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcc
Q 038149          318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL  358 (844)
Q Consensus       318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l  358 (844)
                      ..+++|++|++++|++.+.+|.++. .+++|+.+.+..+.+
T Consensus       274 ~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGS
T ss_pred             hcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHH
Confidence            7777788888888777777777765 666666666655443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.3e-28  Score=261.66  Aligned_cols=251  Identities=22%  Similarity=0.247  Sum_probs=175.7

Q ss_pred             CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc--CCccccCCCCCCEEecC
Q 038149          470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD--VSVQLSNLEVARILDIS  547 (844)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~ls  547 (844)
                      +.++.+++.++ .+|..+  .++|++|++++|+++...+..|..+++|++|++++|.++..  .+..+..+++|      
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L------   80 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL------   80 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC------
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc------
Confidence            35666666665 334333  25666666666666643334456666666666666665522  23334444444      


Q ss_pred             CCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccC
Q 038149          548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNI  626 (844)
Q Consensus       548 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~  626 (844)
                                       ++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..
T Consensus        81 -----------------~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           81 -----------------KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             -----------------CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             -----------------CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence                             45555555554 455667777788888888887775544 56777788888888888888777


Q ss_pred             CcccCCCCCCCEEEcCCCcccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccc
Q 038149          627 PEPLCHLRKLAIVDISYNTLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVL  705 (844)
Q Consensus       627 p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  705 (844)
                      |..+..+++|+.|++++|.+++ .+|..+..                                                +
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------l  174 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------L  174 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------------------C
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhh------------------------------------------------C
Confidence            7778888888888888888775 45555543                                                4


Q ss_pred             ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEE
Q 038149          706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFN  784 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~  784 (844)
                      ++|++|+|++|++++..|..+..+++|++|+|++|.+++..+..+..+++|+.|||++|++++..|..+..++ +|++|+
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            5678888888888877788888888888888888888877777788888888888888888888888888884 888888


Q ss_pred             ccCCcccccCC
Q 038149          785 VSYNNLSGTVP  795 (844)
Q Consensus       785 ls~N~l~g~ip  795 (844)
                      +++|++++..+
T Consensus       255 L~~N~~~~~c~  265 (306)
T 2z66_A          255 LTQNDFACTCE  265 (306)
T ss_dssp             CTTCCEECSGG
T ss_pred             ccCCCeecccC
Confidence            88888887644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.4e-28  Score=266.92  Aligned_cols=280  Identities=16%  Similarity=0.147  Sum_probs=178.2

Q ss_pred             CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEe
Q 038149          442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLL  521 (844)
Q Consensus       442 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  521 (844)
                      |+.....+++++.++.. |..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            44445566666666532 33222  3566666666666654444556666666666666666655555566666666666


Q ss_pred             CCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccC-ccccCCCCCCEEECCCC-cCC
Q 038149          522 MSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP-NALLQSSQLTTLDLRDN-EFS  599 (844)
Q Consensus       522 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~  599 (844)
                      +++|.+++..+..+..+++|++|++++|++                       ++..+ ..+..+++|++|++++| .+.
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-----------------------KTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCC-----------------------SSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCC-----------------------cccCchhhhccCCCCcEEECCCCcccc
Confidence            666666544333455555555555555554                       42222 25666677777777776 355


Q ss_pred             cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccc
Q 038149          600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAED  679 (844)
Q Consensus       600 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  679 (844)
                      +..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..                       
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-----------------------  219 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD-----------------------  219 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH-----------------------
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh-----------------------
Confidence            555566777777777777777777777777777777777777777764 33332211                       


Q ss_pred             ccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhh---hccccCeEeccCccccc----ccCccccc
Q 038149          680 NRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIG---YLGEIHALNLSNNFLSG----SIPRSFSN  752 (844)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~  752 (844)
                                              .+++|+.|++++|++++..+..+.   ....++.++|+++.+++    .+|..+++
T Consensus       220 ------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          220 ------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             ------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred             ------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence                                    135677778888877765544433   34566777777777765    47778888


Q ss_pred             ccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCCC
Q 038149          753 LKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       753 l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~  796 (844)
                      +++|+.||+++|+++ .+|.. +..+++|++|++++|++.|.+|.
T Consensus       276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            888999999999888 56665 48888999999999998887774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=254.10  Aligned_cols=227  Identities=21%  Similarity=0.216  Sum_probs=99.1

Q ss_pred             cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCc--CCccccCCCCcCEecC
Q 038149          397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ--IFPKYMNLAKLVFLFL  474 (844)
Q Consensus       397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L  474 (844)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|..++..+++|++|++++|+++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            34555555555 3443332  35555555555554 44444445555555555555555422  1233334444444444


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCC-hhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG  553 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  553 (844)
                      ++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|    
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----  160 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----  160 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC----
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC----
Confidence            444444 233334444444444444444443222 23344444444444444443333333333333333333333    


Q ss_pred             cCCCCCCCCCCcEEECCCCcccc-ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          554 PLEFSSNHSSLRYLFPHNNSLSG-TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       554 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                                         .+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus       161 -------------------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          161 -------------------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             -------------------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             -------------------ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence                               3332 23344444444444444444444443444444444444444444444333333444


Q ss_pred             CCCCCEEEcCCCccccCCC
Q 038149          633 LRKLAIVDISYNTLNGPIP  651 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p  651 (844)
                      +++|+.|++++|++++..|
T Consensus       222 l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSS
T ss_pred             cccCCEeECCCCCCcccCH
Confidence            4444444444444443333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.7e-28  Score=259.03  Aligned_cols=234  Identities=19%  Similarity=0.224  Sum_probs=134.7

Q ss_pred             CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149          467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI  546 (844)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l  546 (844)
                      +.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45555555555555 44444555555555555555555 45555555555555555555555 44545555555555555


Q ss_pred             CCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149          547 SENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI  626 (844)
Q Consensus       547 s~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  626 (844)
                      ++|.+.+.+|..+.     ..         .++..+                        ..+++|++|+|++|+++ .+
T Consensus       158 ~~n~~~~~~p~~~~-----~~---------~~~~~~------------------------~~l~~L~~L~L~~n~l~-~l  198 (328)
T 4fcg_A          158 RACPELTELPEPLA-----ST---------DASGEH------------------------QGLVNLQSLRLEWTGIR-SL  198 (328)
T ss_dssp             EEETTCCCCCSCSE-----EE---------C-CCCE------------------------EESTTCCEEEEEEECCC-CC
T ss_pred             CCCCCccccChhHh-----hc---------cchhhh------------------------ccCCCCCEEECcCCCcC-cc
Confidence            55444433332210     00         011122                        23555555555555555 55


Q ss_pred             CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149          627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK  706 (844)
Q Consensus       627 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  706 (844)
                      |..+..+++|+.|++++|++++ +|..++.                                                ++
T Consensus       199 p~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------------------------------------------------l~  229 (328)
T 4fcg_A          199 PASIANLQNLKSLKIRNSPLSA-LGPAIHH------------------------------------------------LP  229 (328)
T ss_dssp             CGGGGGCTTCCEEEEESSCCCC-CCGGGGG------------------------------------------------CT
T ss_pred             hHhhcCCCCCCEEEccCCCCCc-Cchhhcc------------------------------------------------CC
Confidence            5555556666666666666553 3333433                                                34


Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      +|++|+|++|++.+.+|..++.+++|++|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+..+++|+.+++.
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            56666666666666667667777777777777777777777777777777777777777777777777777777777776


Q ss_pred             CCccc
Q 038149          787 YNNLS  791 (844)
Q Consensus       787 ~N~l~  791 (844)
                      .|.+.
T Consensus       310 ~~~~~  314 (328)
T 4fcg_A          310 PHLQA  314 (328)
T ss_dssp             GGGSC
T ss_pred             HHHHH
Confidence            65543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.3e-30  Score=299.09  Aligned_cols=400  Identities=12%  Similarity=0.025  Sum_probs=192.6

Q ss_pred             hcCCCCCEEEccCCcccccCchhHhhcCCC-CcEEEcCCCcccccc---cCCCCCCCCCEEEccCCcccccCChh---hh
Q 038149          318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTK-LEIMFLFNNFLTGNL---QLPNSKRNLPHLVISNNSFIGKLPEN---FG  390 (844)
Q Consensus       318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~p~~---~~  390 (844)
                      ..+++|++|++++|.+++..+.++...++. |+.|++++|......   .+...+++|++|++++|.+.+.-..+   +.
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            367778888888777766666655533333 666665555411100   01113445555555555443331111   11


Q ss_pred             cCCCCccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCC
Q 038149          391 LILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNL  466 (844)
Q Consensus       391 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  466 (844)
                      ..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++.......        
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~--------  258 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIG--------  258 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTT--------
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccc--------
Confidence            224555555555555541    122223344555555555555432 332 234445555555543211100        


Q ss_pred             CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEe
Q 038149          467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILD  545 (844)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~  545 (844)
                                   .+..+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+
T Consensus       259 -------------~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          259 -------------MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             -------------CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             -------------hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence                         011222334444555555554322 2344444455555555555555433222 2234455555555


Q ss_pred             cCCCcCcccCCCCC-CCCCCcEEECCC-----------Cccccc-cCccccCCCCCCEEECCCCcCCcccchhhhC-CCC
Q 038149          546 ISENKLYGPLEFSS-NHSSLRYLFPHN-----------NSLSGT-IPNALLQSSQLTTLDLRDNEFSGNIAHLINE-DSN  611 (844)
Q Consensus       546 ls~n~l~~~~~~~~-~~~~L~~L~l~~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~  611 (844)
                      ++++...+.++... .+++|++|++++           +.+++. ++.....+++|++|+++.|.+++..+..+.. +++
T Consensus       325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~  404 (592)
T 3ogk_B          325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN  404 (592)
T ss_dssp             EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred             ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence            54221111111111 334444444441           333322 2222344667777777666666655555544 667


Q ss_pred             CCEEEcc----CCccccc-----CCcccCCCCCCCEEEcCCCc--cccCCCchhhccccccccCcccccccccCCCcccc
Q 038149          612 LRALLLR----GNNLQGN-----IPEPLCHLRKLAIVDISYNT--LNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN  680 (844)
Q Consensus       612 L~~L~L~----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  680 (844)
                      |++|+++    .|++++.     ++..+..+++|+.|++++|.  +++..+..++.                        
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------------------------  460 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------------------------  460 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH------------------------
T ss_pred             CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH------------------------
Confidence            7777774    5555532     22334556667777776543  33322222211                        


Q ss_pred             cccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCcccccc-cCcccccccCCCE
Q 038149          681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTES  758 (844)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~  758 (844)
                                             .+++|++|+|++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++
T Consensus       461 -----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          461 -----------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             -----------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred             -----------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence                                   13456777777777765 3344456667777777777776644 3333456677777


Q ss_pred             EeCCCCcccccCCcccc-CCCCCCEEEccCC
Q 038149          759 MDLSYNKLNGQIPPELG-ELSFLAIFNVSYN  788 (844)
Q Consensus       759 L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N  788 (844)
                      |+|++|++++.-...+. .++.+....+..+
T Consensus       518 L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          518 LWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            77777776654333332 4455544444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.5e-28  Score=264.93  Aligned_cols=284  Identities=18%  Similarity=0.165  Sum_probs=204.8

Q ss_pred             ccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCC
Q 038149          414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL  493 (844)
Q Consensus       414 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  493 (844)
                      -..|+.....+++++.++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus        27 ~~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             CCEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            344566667899999996 788755   3689999999999998877789999999999999999998888889999999


Q ss_pred             cEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCc-CcccCCCCC-CCCCCcEEECC
Q 038149          494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENK-LYGPLEFSS-NHSSLRYLFPH  570 (844)
Q Consensus       494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~-l~~~~~~~~-~~~~L~~L~l~  570 (844)
                      ++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+ .+++|++|+++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            999999999997666669999999999999999985544 478888889988888884 433333322 44555555555


Q ss_pred             CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149          571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI  650 (844)
Q Consensus       571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  650 (844)
                      +|++++..|..+..+++|++|++++|++....+..+..                        +++|+.|++++|++++..
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV------------------------TSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH------------------------TTTEEEEEEESCBCTTCC
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh------------------------cccccEEECCCCcccccc
Confidence            55555444555555555555555555544222222333                        445555555555554433


Q ss_pred             CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC----CCCchh
Q 038149          651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG----DIPSEI  726 (844)
Q Consensus       651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l  726 (844)
                      +..+....                                             ....++.++|+++.+++    .+|..+
T Consensus       239 ~~~l~~~~---------------------------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          239 FSELSTGE---------------------------------------------TNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             CC---------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             cccccccc---------------------------------------------ccchhhccccccccccCcchhhhHHHH
Confidence            32221100                                             02345567777777765    578889


Q ss_pred             hhccccCeEeccCcccccccCcc-cccccCCCEEeCCCCcccccCC
Q 038149          727 GYLGEIHALNLSNNFLSGSIPRS-FSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       727 ~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      +.+++|++|+|++|+++ .+|.. |+++++|++|+|++|.+++..|
T Consensus       274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999999999999999 66666 5899999999999999997654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1e-29  Score=296.75  Aligned_cols=381  Identities=14%  Similarity=0.029  Sum_probs=267.3

Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCC-ccEEEccCCc-CCC-CCCccccccccCcEEeccCCcCCCCCCh---hhhh
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPE-LVYLDMSQNS-FEG-SIPPSMGYMERLLFLDLSSNNFSRDLPK---HFLT  440 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~  440 (844)
                      .+++|++|++++|.+.+..+..+...++. |++|++++|. ++. .++.....+++|++|++++|.+++....   .+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45677777777777666555555443444 8888888876 211 1222334678888888888887654221   2446


Q ss_pred             cCCCCcEEeCcCcccCCc----CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccC---cCCChhhhc
Q 038149          441 SCVSLEFMNLSHNYFDGQ----IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS---GQLPRWIGK  513 (844)
Q Consensus       441 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~---~~~p~~l~~  513 (844)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+...   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            778888888888888632    23345578888888888888875 5667788888888888764332   234456777


Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC--CCCCCCcEEECCCCccccccCccccCCCCCCEE
Q 038149          514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS--SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL  591 (844)
Q Consensus       514 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  591 (844)
                      +++|+.|.++++. .+.+|..+..+++|++|++++|.+.+.....  ..+++|+.|+++++-..+.++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            8889999888753 3456777788889999999998865433321  267889999888443333445555678889999


Q ss_pred             ECC-----------CCcCCcc-cchhhhCCCCCCEEEccCCcccccCCcccCC-CCCCCEEEcC----CCccccCCCc-h
Q 038149          592 DLR-----------DNEFSGN-IAHLINEDSNLRALLLRGNNLQGNIPEPLCH-LRKLAIVDIS----YNTLNGPIPS-C  653 (844)
Q Consensus       592 ~Ls-----------~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~p~-~  653 (844)
                      +++           .|.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++.... .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            998           3566643 2333566889999999888888776666665 8888999886    5666542111 1


Q ss_pred             hhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecC--cccCCCCchhhh-cc
Q 038149          654 FTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN--ELTGDIPSEIGY-LG  730 (844)
Q Consensus       654 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l~~-l~  730 (844)
                      +..+                                            ...+++|++|+|+++  .+++..+..++. ++
T Consensus       428 ~~~~--------------------------------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          428 VRSL--------------------------------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             HHHH--------------------------------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             HHHH--------------------------------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            1110                                            011568999999854  477776666665 89


Q ss_pred             ccCeEeccCccccc-ccCcccccccCCCEEeCCCCccccc-CCccccCCCCCCEEEccCCccccc
Q 038149          731 EIHALNLSNNFLSG-SIPRSFSNLKMTESMDLSYNKLNGQ-IPPELGELSFLAIFNVSYNNLSGT  793 (844)
Q Consensus       731 ~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~  793 (844)
                      +|++|+|++|.+++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99999999999987 4566668899999999999999865 455557899999999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.3e-29  Score=265.55  Aligned_cols=268  Identities=21%  Similarity=0.198  Sum_probs=205.0

Q ss_pred             cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149          469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE  548 (844)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  548 (844)
                      ++..+++.+.+.......+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444555555554444445555667777777777776666667777777777777777765544  66777777777777


Q ss_pred             CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc
Q 038149          549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE  628 (844)
Q Consensus       549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  628 (844)
                      |.+.+..    ..++|+.|++++|++++..+..   +++|++|++++|++++..+..++.+++|++|++++|++++..+.
T Consensus        90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           90 NYVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SEEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             Ccccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            7766433    2367888888888887655443   56789999999999887777888889999999999999887777


Q ss_pred             ccC-CCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149          629 PLC-HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY  707 (844)
Q Consensus       629 ~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  707 (844)
                      .+. .+++|+.|++++|.+++. |...                                                 .+++
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~-~~~~-------------------------------------------------~l~~  192 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDV-KGQV-------------------------------------------------VFAK  192 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEE-ECCC-------------------------------------------------CCTT
T ss_pred             HHhhccCcCCEEECCCCcCccc-cccc-------------------------------------------------cccc
Confidence            664 688999999999988743 1110                                                 1467


Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc-ccCCccccCCCCCCEEEcc
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN-GQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls  786 (844)
                      |++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            899999999999 45666999999999999999999 68888999999999999999999 8889999999999999999


Q ss_pred             -CCcccccCCCC
Q 038149          787 -YNNLSGTVPNK  797 (844)
Q Consensus       787 -~N~l~g~ip~~  797 (844)
                       .+.+.|..|..
T Consensus       271 ~~~~l~~~~~~~  282 (317)
T 3o53_A          271 TVKKLTGQNEEE  282 (317)
T ss_dssp             HHHHHHSSSSCC
T ss_pred             CchhccCCchhc
Confidence             55678777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.3e-26  Score=256.96  Aligned_cols=250  Identities=19%  Similarity=0.174  Sum_probs=158.3

Q ss_pred             cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149          469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE  548 (844)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  548 (844)
                      ...++.++..++ .+|..+  .+++++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            455666666665 345443  35677777777777766666677777777777777777666666666666666666666


Q ss_pred             CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCc-ccccCC
Q 038149          549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN-LQGNIP  627 (844)
Q Consensus       549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p  627 (844)
                      |.+.+                       ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+ +....+
T Consensus       133 n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          133 NWLTV-----------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             SCCSB-----------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CcCCc-----------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            66553                       333445555556666666666554444555566666666666533 332223


Q ss_pred             cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149          628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY  707 (844)
Q Consensus       628 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  707 (844)
                      ..+..+++|+.|+|++|++++. |. +..                                                +++
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------l~~  219 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDM-PN-LTP------------------------------------------------LVG  219 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSC-CC-CTT------------------------------------------------CTT
T ss_pred             hhccCCCCCCEEECCCCccccc-cc-ccc------------------------------------------------ccc
Confidence            3466666666666666666532 21 111                                                346


Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY  787 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  787 (844)
                      |++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++
T Consensus       220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence            66777777777766677777777777777777777777777777777777777777777766666667777777777777


Q ss_pred             CcccccC
Q 038149          788 NNLSGTV  794 (844)
Q Consensus       788 N~l~g~i  794 (844)
                      |++.+..
T Consensus       300 Np~~CdC  306 (452)
T 3zyi_A          300 NPWNCDC  306 (452)
T ss_dssp             SCEECST
T ss_pred             CCcCCCC
Confidence            7765543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.2e-27  Score=248.03  Aligned_cols=253  Identities=20%  Similarity=0.203  Sum_probs=130.2

Q ss_pred             CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCC
Q 038149          470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN  549 (844)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n  549 (844)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555555555 233322  345566666666555544455555555555555555555554555555555555555554


Q ss_pred             cCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc
Q 038149          550 KLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP  629 (844)
Q Consensus       550 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~  629 (844)
                      ..                      ++...|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus        91 ~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           91 AQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             TT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence            41                      22223444555555555555555555544555555555555555555555444444


Q ss_pred             cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149          630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT  709 (844)
Q Consensus       630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  709 (844)
                      +..+++|+.|++++|++++..+..|..                                                +++|+
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------l~~L~  180 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRG------------------------------------------------LHSLD  180 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTT------------------------------------------------CTTCC
T ss_pred             hccCCCccEEECCCCcccccCHHHhcC------------------------------------------------ccccC
Confidence            555555555555555555333333322                                                23455


Q ss_pred             EEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149          710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       710 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      +|+|++|++++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+.. .-...++.+..+.+.
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~  259 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSE  259 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECC
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCc
Confidence            5555555555555555555556666666666665544445555566666666666555433211 111223334455556


Q ss_pred             ccccCCC
Q 038149          790 LSGTVPN  796 (844)
Q Consensus       790 l~g~ip~  796 (844)
                      +.+..|.
T Consensus       260 ~~c~~p~  266 (285)
T 1ozn_A          260 VPCSLPQ  266 (285)
T ss_dssp             CBEEESG
T ss_pred             cccCCch
Confidence            6555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2e-26  Score=241.99  Aligned_cols=201  Identities=18%  Similarity=0.185  Sum_probs=119.4

Q ss_pred             cEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccC
Q 038149          421 LFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN  500 (844)
Q Consensus       421 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  500 (844)
                      +.++.+++.++ .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56777777775 566533   46777777777777776666677777777777777777766666677777777777777


Q ss_pred             cc-cCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccC
Q 038149          501 NM-LSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP  579 (844)
Q Consensus       501 n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p  579 (844)
                      |. +.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+                       
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------  146 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-----------------------  146 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-----------------------
Confidence            75 655556666667777777777776666556666666666666666665543333                       


Q ss_pred             ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc
Q 038149          580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG  648 (844)
Q Consensus       580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  648 (844)
                      ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            333444444444444444443333334444444444444444444444444444444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.9e-26  Score=256.45  Aligned_cols=248  Identities=20%  Similarity=0.202  Sum_probs=156.5

Q ss_pred             cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149          469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE  548 (844)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  548 (844)
                      ...++..+..++ .+|..+  .++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456667776666 455544  36677777777777766667777777777777777777766666677777777777666


Q ss_pred             CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCc-ccccCC
Q 038149          549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN-LQGNIP  627 (844)
Q Consensus       549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p  627 (844)
                      |++....                       +..|..+++|++|++++|++.+..+..+..+++|++|++++|+ +....+
T Consensus       122 n~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          122 NRLTTIP-----------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             SCCSSCC-----------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CcCCeeC-----------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            6665433                       3344555555555555555554444455555555555555533 222223


Q ss_pred             cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149          628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY  707 (844)
Q Consensus       628 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  707 (844)
                      ..|..+++|+.|++++|+++ .+|. +..                                                +++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~------------------------------------------------l~~  208 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTP------------------------------------------------LIK  208 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-SCCC-CTT------------------------------------------------CSS
T ss_pred             chhhcccccCeecCCCCcCc-cccc-cCC------------------------------------------------Ccc
Confidence            34556666666666666655 2221 111                                                345


Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY  787 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  787 (844)
                      |++|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            66677777777766666777777777777777777766666777777777777777777766666667777777777777


Q ss_pred             Ccccc
Q 038149          788 NNLSG  792 (844)
Q Consensus       788 N~l~g  792 (844)
                      |++.+
T Consensus       289 Np~~C  293 (440)
T 3zyj_A          289 NPWNC  293 (440)
T ss_dssp             SCEEC
T ss_pred             CCccC
Confidence            77654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.9e-28  Score=258.85  Aligned_cols=269  Identities=20%  Similarity=0.196  Sum_probs=193.8

Q ss_pred             cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149          419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV  498 (844)
Q Consensus       419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  498 (844)
                      +++..+++.+.+. ..+..++..+++|++|++++|++++..+..+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            4556677777764 4455555666777777777777777666667777777777777777765443  666666777777


Q ss_pred             cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149          499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI  578 (844)
Q Consensus       499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  578 (844)
                      ++|++++..     ..++|++|++++|.+++..+                        .  .+++|+.|++++|++++..
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~------------------------~--~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSC------------------------S--RGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEE------------------------C--CCSSCEEEECCSSCCCSGG
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCc------------------------c--ccCCCCEEECCCCCCCCcc
Confidence            776665321     23555556555555543322                        2  1345666667777777666


Q ss_pred             CccccCCCCCCEEECCCCcCCcccchhh-hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149          579 PNALLQSSQLTTLDLRDNEFSGNIAHLI-NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI  657 (844)
Q Consensus       579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  657 (844)
                      +..+..+++|++|++++|++++..+..+ ..+++|++|+|++|++++. | ....+++|+.|++++|++++. |..+.. 
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~-  212 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS-  212 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG-
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc-
Confidence            7777888888888888888887777666 4688899999999988855 3 234588999999999998853 333543 


Q ss_pred             ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec
Q 038149          658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL  737 (844)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  737 (844)
                                                                     +++|++|+|++|+++ .+|..+..+++|+.|++
T Consensus       213 -----------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          213 -----------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             -----------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             -----------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence                                                           457889999999998 67888999999999999


Q ss_pred             cCcccc-cccCcccccccCCCEEeCC-CCcccccCCcc
Q 038149          738 SNNFLS-GSIPRSFSNLKMTESMDLS-YNKLNGQIPPE  773 (844)
Q Consensus       738 s~N~l~-~~ip~~l~~l~~L~~L~Ls-~N~l~~~ip~~  773 (844)
                      ++|.++ +.+|..++.+++|+.|+++ .+.++|..|..
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            999998 7888899999999999999 45677766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.7e-28  Score=261.12  Aligned_cols=250  Identities=19%  Similarity=0.220  Sum_probs=161.7

Q ss_pred             ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCccc-CcCCChhhh-------cCCCCCEEeCCCCcccccCCcc
Q 038149          463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML-SGQLPRWIG-------KFSNLDVLLMSRNSFEGDVSVQ  534 (844)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l-~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~~~~  534 (844)
                      ++..++|+.+++++|.+  .+|..+...  |+.|++++|.+ ...+|..+.       ++++|++|++++|.+++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34556677777777777  455544332  77777777777 334555544       5677777777777777666665


Q ss_pred             c--cCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCC-----CCCCEEECCCCcCCcccchhhh
Q 038149          535 L--SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-----SQLTTLDLRDNEFSGNIAHLIN  607 (844)
Q Consensus       535 l--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~~~~l~  607 (844)
                      +  ..+++|++|++++|++.+.                        |..+..+     ++|++|++++|++.+..|..++
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR------------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS------------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             HHHhcCCCccEEEccCCCCcch------------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            4  5666666666666665543                        3444433     5666666666666665556666


Q ss_pred             CCCCCCEEEccCCccccc--CCccc--CCCCCCCEEEcCCCcccc--CCCchhhccccccccCcccccccccCCCccccc
Q 038149          608 EDSNLRALLLRGNNLQGN--IPEPL--CHLRKLAIVDISYNTLNG--PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR  681 (844)
Q Consensus       608 ~l~~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  681 (844)
                      .+++|++|++++|++.+.  +|..+  ..+++|+.|++++|++++  .++..+.                          
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------------------------  224 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA--------------------------  224 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------------------------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------------------------
Confidence            666666666666665543  22233  667777777777777762  1111110                          


Q ss_pred             ccccceeeeeeeccccccccccccccceEEEeecCcccCCCC-chhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149          682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP-SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD  760 (844)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  760 (844)
                                           ..+++|++|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|++||
T Consensus       225 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~  280 (312)
T 1wwl_A          225 ---------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD  280 (312)
T ss_dssp             ---------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred             ---------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence                                 013567778888888877664 34556778888888888887 7777766  7788888


Q ss_pred             CCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          761 LSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       761 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      |++|++++. |. +..+++|++|++++|++++
T Consensus       281 Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          281 LSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            888888865 65 7788888888888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.3e-27  Score=252.22  Aligned_cols=212  Identities=20%  Similarity=0.251  Sum_probs=131.2

Q ss_pred             cccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccC-CcCCcccc-------CCCCcCEecCCCCcCccccc
Q 038149          413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD-GQIFPKYM-------NLAKLVFLFLNDNQFTGRLE  484 (844)
Q Consensus       413 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~  484 (844)
                      .++..++|++|++++|.+  .+|..+...   |+.|++++|++. ..++..+.       ++++|++|++++|++++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345566777777777777  566655432   677777777773 33443333       56677777777777776666


Q ss_pred             ccc--cCCCCCcEEEccCcccCcCCChhhhcC-----CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC
Q 038149          485 VGL--LNASSLYVLDVSNNMLSGQLPRWIGKF-----SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF  557 (844)
Q Consensus       485 ~~~--~~l~~L~~L~ls~n~l~~~~p~~l~~l-----~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  557 (844)
                      ..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.++ 
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  190 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-  190 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-
Confidence            655  6677777777777777765 6666655     666777776666666555666666666666666555432210 


Q ss_pred             CCCCCCCcEEECCCCccccccCccc--cCCCCCCEEECCCCcCCc--ccc-hhhhCCCCCCEEEccCCcccccCC-cccC
Q 038149          558 SSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLRDNEFSG--NIA-HLINEDSNLRALLLRGNNLQGNIP-EPLC  631 (844)
Q Consensus       558 ~~~~~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~--~~~-~~l~~l~~L~~L~L~~N~l~~~~p-~~l~  631 (844)
                                          .|..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++.+| ..+.
T Consensus       191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             --------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence                                12223  566777777777777773  122 334566777777777777776554 3444


Q ss_pred             CCCCCCEEEcCCCccccCCCc
Q 038149          632 HLRKLAIVDISYNTLNGPIPS  652 (844)
Q Consensus       632 ~l~~L~~L~Ls~N~l~~~~p~  652 (844)
                      .+++|+.|+|++|+++ .+|.
T Consensus       251 ~l~~L~~L~Ls~N~l~-~ip~  270 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-QVPK  270 (312)
T ss_dssp             CCTTCCEEECTTSCCS-SCCS
T ss_pred             hcCCCCEEECCCCccC-hhhh
Confidence            5666666666666665 4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=9.8e-26  Score=259.10  Aligned_cols=268  Identities=25%  Similarity=0.307  Sum_probs=133.9

Q ss_pred             CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149          395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL  474 (844)
Q Consensus       395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (844)
                      .++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|+++.. |.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            4666666666666 4555443  56666666666664 4443    345555555555555432 21   3344444444


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP  554 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  554 (844)
                      ++|.+++                         +|.   .+++|+.|++++|.+++ +|..   +++|++|++++|.+.+.
T Consensus       109 s~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          109 FSNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CSCCCCC-------------------------CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred             cCCcCCC-------------------------CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence            4444442                         222   23444444444444432 2221   24444444444444321


Q ss_pred             CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149          555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR  634 (844)
Q Consensus       555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  634 (844)
                       |.  .+.+|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..   ++
T Consensus       157 -~~--~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          157 -PA--LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             -CC--CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             -CC--ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence             11  12345555555555542 33   234556666666666553 2321   345666666666655 33332   24


Q ss_pred             CCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEee
Q 038149          635 KLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLS  714 (844)
Q Consensus       635 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  714 (844)
                      +|+.|++++|++++ +|..                                                   +++|+.|+|+
T Consensus       222 ~L~~L~Ls~N~L~~-lp~~---------------------------------------------------l~~L~~L~Ls  249 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LPVL---------------------------------------------------PSELKELMVS  249 (622)
T ss_dssp             TCCEEECCSSCCSC-CCCC---------------------------------------------------CTTCCEEECC
T ss_pred             CCCEEEccCCccCc-CCCC---------------------------------------------------CCcCcEEECC
Confidence            55666666665553 2210                                                   2345556666


Q ss_pred             cCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC
Q 038149          715 SNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS  778 (844)
Q Consensus       715 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  778 (844)
                      +|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus       250 ~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          250 GNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            66665 4444   3455666666666665 5555566666666666666666655555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-27  Score=267.06  Aligned_cols=235  Identities=22%  Similarity=0.206  Sum_probs=171.1

Q ss_pred             CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149          491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH  570 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  570 (844)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..+    .++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            356666666666666555666666666666666666665444  6666666666666666654332    2567777777


Q ss_pred             CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcCCCccccC
Q 038149          571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDISYNTLNGP  649 (844)
Q Consensus       571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~  649 (844)
                      +|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|++++.+|..+. .+++|+.|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            7777755543   346788888888888877777788888888888888888877777775 678888888888888754


Q ss_pred             CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149          650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL  729 (844)
Q Consensus       650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  729 (844)
                      .+..                                                  .+++|+.|+|++|++++ +|..++.+
T Consensus       185 ~~~~--------------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l  213 (487)
T 3oja_A          185 KGQV--------------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSA  213 (487)
T ss_dssp             ECCC--------------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred             cccc--------------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCC
Confidence            2111                                                  14578888888888885 45558888


Q ss_pred             cccCeEeccCcccccccCcccccccCCCEEeCCCCccc-ccCCccccCCCCCCEEEcc
Q 038149          730 GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN-GQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       730 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls  786 (844)
                      ++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888888888888884 7778888888888888888887 7777888888888888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.2e-25  Score=249.30  Aligned_cols=247  Identities=18%  Similarity=0.135  Sum_probs=171.4

Q ss_pred             cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCC
Q 038149          397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND  476 (844)
Q Consensus       397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  476 (844)
                      ..++.++..++ .+|..+.  ++++.|+|++|++.+ ++...+..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            44555555554 3444333  455556666665542 3333345556666666666666555555566666666666666


Q ss_pred             CcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc-ccccCCccccCCCCCCEEecCCCcCcccC
Q 038149          477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS-FEGDVSVQLSNLEVARILDISENKLYGPL  555 (844)
Q Consensus       477 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  555 (844)
                      |+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|++|++++|.+. .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            66665555556666666666666666665555566666777777776643 33333345667777777777777775 34


Q ss_pred             CCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCC
Q 038149          556 EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK  635 (844)
Q Consensus       556 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  635 (844)
                      |....+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus       201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence            44447788888888888888888889999999999999999999888888999999999999999999777778889999


Q ss_pred             CCEEEcCCCcccc
Q 038149          636 LAIVDISYNTLNG  648 (844)
Q Consensus       636 L~~L~Ls~N~l~~  648 (844)
                      |+.|+|++|++..
T Consensus       281 L~~L~L~~Np~~C  293 (440)
T 3zyj_A          281 LERIHLHHNPWNC  293 (440)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             CCEEEcCCCCccC
Confidence            9999999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.2e-25  Score=250.18  Aligned_cols=249  Identities=18%  Similarity=0.117  Sum_probs=185.0

Q ss_pred             ccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCC
Q 038149          396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLN  475 (844)
Q Consensus       396 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (844)
                      ...++.++..++ .+|..+.  +++++|++++|.+++ ++...+..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            345555555555 3454333  456666666666653 333334566666666666666666666666677777777777


Q ss_pred             CCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc-ccccCCccccCCCCCCEEecCCCcCccc
Q 038149          476 DNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS-FEGDVSVQLSNLEVARILDISENKLYGP  554 (844)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~  554 (844)
                      +|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..+.++++|++|++++|.+.+.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            777776555666777777777777777776656667777777777777744 3333344577778888888888887653


Q ss_pred             CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149          555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR  634 (844)
Q Consensus       555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  634 (844)
                       |....+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..++
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence             4445788899999999999988899999999999999999999998899999999999999999999987778889999


Q ss_pred             CCCEEEcCCCccccC
Q 038149          635 KLAIVDISYNTLNGP  649 (844)
Q Consensus       635 ~L~~L~Ls~N~l~~~  649 (844)
                      +|+.|+|++|++...
T Consensus       291 ~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          291 YLVELHLHHNPWNCD  305 (452)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             CCCEEEccCCCcCCC
Confidence            999999999998743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4.5e-25  Score=253.58  Aligned_cols=263  Identities=25%  Similarity=0.230  Sum_probs=208.0

Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      +++.|++++|.++ .+|..+.  ++|+.|++++|.++. +|.   .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4555555555555 2333332  567777777777663 343   4688999999999988 4555   67899999999


Q ss_pred             CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc
Q 038149          524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA  603 (844)
Q Consensus       524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  603 (844)
                      +|.+++. |.   .+++|+.|++++|++.+. |.  .+++|++|++++|++++ +|.   ...+|+.|++++|++++ +|
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV--LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC--CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence            9999864 43   578899999999999863 33  35899999999999985 454   34689999999999995 55


Q ss_pred             hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccc
Q 038149          604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRES  683 (844)
Q Consensus       604 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (844)
                         ..+++|++|++++|++++ +|..   +++|+.|++++|.++ .+|..                              
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------------------  219 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------------------  219 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------------------
Confidence               457899999999999985 5543   478999999999987 33321                              


Q ss_pred             ccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCC
Q 038149          684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSY  763 (844)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  763 (844)
                                           +++|+.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++
T Consensus       220 ---------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          220 ---------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             ---------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             ---------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence                                 3478999999999995 77   45689999999999999 5776   678999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149          764 NKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       764 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      |+|+ .+|..+..+++|+.|++++|+++|.+|..
T Consensus       271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            9999 88999999999999999999999988763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-26  Score=260.40  Aligned_cols=245  Identities=19%  Similarity=0.171  Sum_probs=205.7

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEEC
Q 038149          514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL  593 (844)
Q Consensus       514 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  593 (844)
                      +++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+     .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            3489999999999999888999999999999999999988776 4489999999999999985432     389999999


Q ss_pred             CCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccccccccc
Q 038149          594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSL  673 (844)
Q Consensus       594 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~  673 (844)
                      ++|.+++..+.   .+++|++|+|++|++++..|..++.+++|+.|+|++|.+++.+|..+..                 
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-----------------  166 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-----------------  166 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-----------------
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-----------------
Confidence            99999987664   4688999999999999999999999999999999999999888877652                 


Q ss_pred             CCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccc
Q 038149          674 ALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNL  753 (844)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  753 (844)
                                                    .+++|++|+|++|.+++. |. +..+++|++|+|++|.+++. |..++.+
T Consensus       167 ------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  213 (487)
T 3oja_A          167 ------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSA  213 (487)
T ss_dssp             ------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred             ------------------------------hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCC
Confidence                                          156899999999999965 33 44699999999999999964 5559999


Q ss_pred             cCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccc-ccCCCC-CcCCCcCccccC-------CCCCCcCcc
Q 038149          754 KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS-GTVPNK-GQFANFDESNYR-------GNPYLCGPA  818 (844)
Q Consensus       754 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~~~~~~~~-------gn~~lc~~~  818 (844)
                      ++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|.. +.+..+......       +|+..|.++
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            999999999999995 7888999999999999999998 555532 223233333332       677777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=5.1e-28  Score=282.44  Aligned_cols=373  Identities=16%  Similarity=0.101  Sum_probs=201.0

Q ss_pred             CCCCCEEEccCC-cccccCChhhhcCCCCccEEEccCCcCCCCCCcccc----ccccCcEEeccCCc--CCCCCChhhhh
Q 038149          368 KRNLPHLVISNN-SFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG----YMERLLFLDLSSNN--FSRDLPKHFLT  440 (844)
Q Consensus       368 ~~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~--l~~~~~~~~~~  440 (844)
                      +++|++|++++| .+.......+...+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+..
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            445555555555 222221122222356666666666665544333332    44466666666664  11111112223


Q ss_pred             cCCCCcEEeCcCc-ccCCcCCccccCCCCcCEecCCCCc-------CcccccccccCCCCCcEE-EccCcccCcCCChhh
Q 038149          441 SCVSLEFMNLSHN-YFDGQIFPKYMNLAKLVFLFLNDNQ-------FTGRLEVGLLNASSLYVL-DVSNNMLSGQLPRWI  511 (844)
Q Consensus       441 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~ls~n~l~~~~p~~l  511 (844)
                      .+++|++|++++| .+.+ ++..+..+++|++|++..+.       +.+ ++..+.++++|+.| .+.+... +.++..+
T Consensus       209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~  285 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVY  285 (594)
T ss_dssp             HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGH
T ss_pred             hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHH
Confidence            4566666666665 2222 44445556666666644332       222 23345666666666 3333222 2344444


Q ss_pred             hcCCCCCEEeCCCCcccccC-CccccCCCCCCEEecCCCcCcc-cCCCCC-CCCCCcEEECC---------CCccccccC
Q 038149          512 GKFSNLDVLLMSRNSFEGDV-SVQLSNLEVARILDISENKLYG-PLEFSS-NHSSLRYLFPH---------NNSLSGTIP  579 (844)
Q Consensus       512 ~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~-~~~~~~-~~~~L~~L~l~---------~n~l~~~~p  579 (844)
                      ..+++|++|++++|.+++.. ...+..+++|++|++++| +.. .++... .+++|+.|++.         .+.+++...
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            55666777777766654332 222445666677766666 221 111111 35666666662         234443333


Q ss_pred             cccc-CCCCCCEEECCCCcCCcccchhhh-CCCCCCEEEcc--C----Ccccc-----cCCcccCCCCCCCEEEcCCCcc
Q 038149          580 NALL-QSSQLTTLDLRDNEFSGNIAHLIN-EDSNLRALLLR--G----NNLQG-----NIPEPLCHLRKLAIVDISYNTL  646 (844)
Q Consensus       580 ~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~--~----N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l  646 (844)
                      ..+. .+++|++|+++.|.+++..+..+. .+++|++|+++  +    +.+++     .++..+..+++|+.|++++ .+
T Consensus       365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l  443 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL  443 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred             HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence            3333 367777777777777765555554 47778888777  3    44441     1122245667777777765 44


Q ss_pred             ccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149          647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI  726 (844)
Q Consensus       647 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  726 (844)
                      ++..+..++.                                               .+++|+.|+|++|.+++..+..+
T Consensus       444 ~~~~~~~l~~-----------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          444 TDKVFEYIGT-----------------------------------------------YAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             CHHHHHHHHH-----------------------------------------------HCTTCCEEEEESCCSSHHHHHHH
T ss_pred             cHHHHHHHHH-----------------------------------------------hchhccEeeccCCCCcHHHHHHH
Confidence            4332222221                                               14567888888888876555555


Q ss_pred             -hhccccCeEeccCcccccccCc-ccccccCCCEEeCCCCcccccCCccc-cCCCCCCEEEccCCcccc
Q 038149          727 -GYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYNKLNGQIPPEL-GELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       727 -~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~ls~N~l~g  792 (844)
                       ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~  545 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD  545 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence             5678888888888888655444 34457888888888888765444444 456777666666554433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=3.2e-27  Score=275.73  Aligned_cols=378  Identities=15%  Similarity=0.054  Sum_probs=256.6

Q ss_pred             CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCC-cCCCC-CCccccccccCcEEeccCCcCCCCCChh---hhhc
Q 038149          367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQN-SFEGS-IPPSMGYMERLLFLDLSSNNFSRDLPKH---FLTS  441 (844)
Q Consensus       367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~  441 (844)
                      .+++|++|++++|.+.+..+..+...+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..   +...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            45678888888887776666666544789999999888 45432 3444457888999999998876543322   2235


Q ss_pred             CCCCcEEeCcCcc--cCCc-CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCc-------ccCcCCChhh
Q 038149          442 CVSLEFMNLSHNY--FDGQ-IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN-------MLSGQLPRWI  511 (844)
Q Consensus       442 l~~L~~L~Ls~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-------~l~~~~p~~l  511 (844)
                      +++|++|++++|.  ++.. +......+++|++|++++|...+.++..+..+++|++|+++.+       .+.+ ++..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence            6789999998886  2211 1111245688899999888333336777777888888885544       3343 34467


Q ss_pred             hcCCCCCEE-eCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC--CCCCCCcEEECCCCccccc-cCccccCCCC
Q 038149          512 GKFSNLDVL-LMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS--SNHSSLRYLFPHNNSLSGT-IPNALLQSSQ  587 (844)
Q Consensus       512 ~~l~~L~~L-~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~-~p~~l~~l~~  587 (844)
                      .++++|+.| .+.+... +.++..+..+++|++|++++|.+.+.....  ..+++|+.|++++| ++.. ++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            888888888 4443322 344555556788999999988865432221  16788899988888 4322 2333345788


Q ss_pred             CCEEEC---------CCCcCCcccchhh-hCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcC--C----CccccCC
Q 038149          588 LTTLDL---------RDNEFSGNIAHLI-NEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDIS--Y----NTLNGPI  650 (844)
Q Consensus       588 L~~L~L---------s~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~  650 (844)
                      |++|++         +.+.+++.....+ ..+++|++|.++.|++++..+..+. .+++|+.|+++  +    +.+++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            888888         3345554433333 3478888888888888766555554 47888888888  3    3443211


Q ss_pred             Cc-hhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhh-
Q 038149          651 PS-CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY-  728 (844)
Q Consensus       651 p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-  728 (844)
                      .. .+..+                                            ...+++|+.|+|++ .+++..+..++. 
T Consensus       420 ~~~~~~~l--------------------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~  454 (594)
T 2p1m_B          420 LDIGFGAI--------------------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTY  454 (594)
T ss_dssp             THHHHHHH--------------------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred             hhhHHHHH--------------------------------------------HhhCCCccEEeecC-cccHHHHHHHHHh
Confidence            11 11100                                            01256899999987 777766667766 


Q ss_pred             ccccCeEeccCcccccccCccc-ccccCCCEEeCCCCcccccCCc-cccCCCCCCEEEccCCcccc
Q 038149          729 LGEIHALNLSNNFLSGSIPRSF-SNLKMTESMDLSYNKLNGQIPP-ELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       729 l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~g  792 (844)
                      +++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|+++.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            8999999999999987766666 7799999999999999766554 44568999999999999853

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5.2e-24  Score=222.34  Aligned_cols=227  Identities=22%  Similarity=0.220  Sum_probs=164.6

Q ss_pred             EEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccc
Q 038149          496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS  575 (844)
Q Consensus       496 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~  575 (844)
                      .+..+..++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|                       +++
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~   65 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----------------------EIQ   65 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-----------------------CCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-----------------------cCC
Confidence            444444454 3444332  35666666666665555445555555555555555                       444


Q ss_pred             cccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccC-CCchh
Q 038149          576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGP-IPSCF  654 (844)
Q Consensus       576 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~  654 (844)
                      +..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++. +|..+
T Consensus        66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~  145 (276)
T 2z62_A           66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence            44555677777888888888888777777778888888888888888866666788888888888888888763 56666


Q ss_pred             hccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccC-
Q 038149          655 TNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIH-  733 (844)
Q Consensus       655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~-  733 (844)
                      ++                                                +++|++|+|++|++++..+..+..++.|+ 
T Consensus       146 ~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          146 SN------------------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             GG------------------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             cc------------------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            55                                                45778888888888877777788777777 


Q ss_pred             ---eEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149          734 ---ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       734 ---~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                         .|++++|.+++..+..+. ..+|+.|+|++|++++..+..+..+++|+.|++++|++++..|..
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence               889999999865555444 458999999999999776677889999999999999999888754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=8.2e-24  Score=219.88  Aligned_cols=216  Identities=22%  Similarity=0.302  Sum_probs=167.2

Q ss_pred             CCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCC
Q 038149           48 SDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQL  127 (844)
Q Consensus        48 ~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L  127 (844)
                      .++|.|.|+.|.- .+.++.+++++..+.   .+       + ..+  .+++++|++++|.+.++.+    ..+.++++|
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~---~i-------p-~~~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT---AI-------P-SNI--PADTKKLDLQSNKLSSLPS----KAFHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCS---SC-------C-SCC--CTTCSEEECCSSCCSCCCT----TSSSSCTTC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCC---cc-------C-CCC--CCCCCEEECcCCCCCeeCH----HHhcCCCCC
Confidence            4799999999974 345677888887761   11       1 111  2578999999999888766    567888999


Q ss_pred             CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149          128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI  207 (844)
Q Consensus       128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (844)
                      ++|++++|.++...+..|.++++|++|++++|.++.  ++...+.++++|++|++++|+++ .+++..|..+++|++|++
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEEC
Confidence            999999999988777778889999999999998854  55567788889999999998887 556666888889999999


Q ss_pred             cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149          208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV  286 (844)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i  286 (844)
                      ++|.+++..+..|..+++|++|++++|.++ .++...|.++++|++|++++|.+++ ++...+..+++|+.|++++|.+
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCe
Confidence            999888777677888888999999888888 4554678888888888888888874 4444566666666666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.4e-23  Score=219.17  Aligned_cols=229  Identities=21%  Similarity=0.162  Sum_probs=168.6

Q ss_pred             EecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCc
Q 038149          471 FLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK  550 (844)
Q Consensus       471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~  550 (844)
                      .++..+..+. .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4455555555 456554  3689999999999998877789999999999999999998777778888888888877776


Q ss_pred             CcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc-CCcc
Q 038149          551 LYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN-IPEP  629 (844)
Q Consensus       551 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~  629 (844)
                      +.+                       ..+..+..+++|++|++++|++.+..+..++.+++|++|++++|++++. +|..
T Consensus        88 l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           88 IQS-----------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CCE-----------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             cCc-----------------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence            654                       3344556666667777777766665555666777777777777777653 5777


Q ss_pred             cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149          630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT  709 (844)
Q Consensus       630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  709 (844)
                      +..+++|+.|++++|++++..+..+..+..                                             ++.+.
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------------L~~l~  179 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---------------------------------------------MPLLN  179 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHT---------------------------------------------CTTCC
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhhhhh---------------------------------------------ccccc
Confidence            777888888888888887666665554321                                             12222


Q ss_pred             -EEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149          710 -GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       710 -~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                       +|++++|++++..+..+ ...+|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|
T Consensus       180 l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          180 LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence             68889998885444444 44589999999999997666677889999999999999986543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=8.4e-23  Score=212.22  Aligned_cols=206  Identities=25%  Similarity=0.244  Sum_probs=162.8

Q ss_pred             CCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC
Q 038149          541 ARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN  620 (844)
Q Consensus       541 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  620 (844)
                      .+.++++++.+.. +|... .+.++.|++++|++++..+..|..+++|++|++++|+++...+..+..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4455555555543 22221 245777777777777666667888888888888888888666666788888999999998


Q ss_pred             cccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccc
Q 038149          621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESY  700 (844)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (844)
                      ++++..+..+..+++|+.|++++|++++..|..|..                                            
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------  131 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------  131 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence            888766677888899999999999888766666554                                            


Q ss_pred             cccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCC
Q 038149          701 KGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL  780 (844)
Q Consensus       701 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  780 (844)
                          +++|++|+|++|++++..+..++.+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|
T Consensus       132 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          132 ----LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence                4578899999999986666668899999999999999997777788999999999999999997767778899999


Q ss_pred             CEEEccCCcccccCCC
Q 038149          781 AIFNVSYNNLSGTVPN  796 (844)
Q Consensus       781 ~~L~ls~N~l~g~ip~  796 (844)
                      +.|++++|++.+..+.
T Consensus       208 ~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          208 KMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CEEECCSSCBCCSSSS
T ss_pred             CEEEecCCCeeCCCcc
Confidence            9999999999876653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.1e-23  Score=218.94  Aligned_cols=162  Identities=25%  Similarity=0.248  Sum_probs=120.6

Q ss_pred             cccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccc
Q 038149          581 ALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW  660 (844)
Q Consensus       581 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~  660 (844)
                      .+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..    
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----  155 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----  155 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc----
Confidence            4555666666666666666555556666677777777777776666666677777777777777777555544443    


Q ss_pred             cccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCc
Q 038149          661 MEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNN  740 (844)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  740 (844)
                                                                  +++|++|++++|++++..|..++.+++|++|++++|
T Consensus       156 --------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          156 --------------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence                                                        456778888888888766667788888899999999


Q ss_pred             ccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149          741 FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       741 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      ++++..|..++.+++|+.|++++|.+.+..       +.|+.++++.|+++|.+|..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            998877777888999999999999887654       46888899999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-23  Score=217.56  Aligned_cols=227  Identities=19%  Similarity=0.180  Sum_probs=131.7

Q ss_pred             cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149          469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE  548 (844)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  548 (844)
                      +..+.+.++.+....  ....+++|+.|++++|.++. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            334444444444322  23345566666666666552 22 355566666666666665532  2344444454444444


Q ss_pred             CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc
Q 038149          549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE  628 (844)
Q Consensus       549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  628 (844)
                      |.+                       ++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+.
T Consensus        95 n~l-----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           95 NQL-----------------------QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             SCC-----------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             Ccc-----------------------CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence            444                       333344455555666666666666655555556666666666666666655555


Q ss_pred             ccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccc
Q 038149          629 PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM  708 (844)
Q Consensus       629 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  708 (844)
                      .+..+++|+.|++++|++++..|..++.                                                +++|
T Consensus       152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------l~~L  183 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQSLPEGVFDK------------------------------------------------LTQL  183 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------------CTTC
T ss_pred             HhccCccCCEEECCCCCcCccCHHHhcC------------------------------------------------CccC
Confidence            5566666666666666666544444433                                                3456


Q ss_pred             eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCC
Q 038149          709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSF  779 (844)
Q Consensus       709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  779 (844)
                      ++|++++|++++..|..++.+++|++|++++|.+.+..       ++|+.|+++.|+++|.+|..++.+..
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccCC
Confidence            66777777777666666677777777777777766443       35677777777777777777666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1e-22  Score=213.33  Aligned_cols=206  Identities=21%  Similarity=0.180  Sum_probs=180.2

Q ss_pred             ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCE
Q 038149          535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRA  614 (844)
Q Consensus       535 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  614 (844)
                      +..+++++.++++++.+... |... .+.++.|++++|.+++..+..+..+++|++|++++|.+++..+.  +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            66788999999999999754 3332 37899999999999988889999999999999999999965443  78999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeec
Q 038149          615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAK  694 (844)
Q Consensus       615 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (844)
                      |++++|+++ .+|..+..+++|+.|++++|++++..|..|.+                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            999999998 78888999999999999999999776677765                                      


Q ss_pred             cccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccc
Q 038149          695 NRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPEL  774 (844)
Q Consensus       695 ~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  774 (844)
                                +++|++|+|++|++++..+..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus       123 ----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          123 ----------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             ----------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ----------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                      457899999999999777777899999999999999999666667789999999999999999 789999


Q ss_pred             cCCCCCCEEEccCCcccccC
Q 038149          775 GELSFLAIFNVSYNNLSGTV  794 (844)
Q Consensus       775 ~~l~~L~~L~ls~N~l~g~i  794 (844)
                      ..+..|+.+++++|++.+..
T Consensus       192 ~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCSG
T ss_pred             cccccCCeEEeCCCCccCcC
Confidence            99999999999999997643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.6e-22  Score=211.97  Aligned_cols=203  Identities=22%  Similarity=0.162  Sum_probs=172.6

Q ss_pred             hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCC
Q 038149          511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLT  589 (844)
Q Consensus       511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  589 (844)
                      +..+++++++++++|.++ .+|..+.  +.+++|++++|.+.+..+..+ .+++|+.|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            567889999999999998 4555443  689999999999987766655 889999999999999865433  7889999


Q ss_pred             EEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccccc
Q 038149          590 TLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNS  669 (844)
Q Consensus       590 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~  669 (844)
                      +|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..             
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------  146 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-------------  146 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence            9999999998 67888889999999999999999777788999999999999999998666555544             


Q ss_pred             ccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcc
Q 038149          670 TLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRS  749 (844)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  749 (844)
                                                         +++|+.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|..
T Consensus       147 -----------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~  190 (290)
T 1p9a_G          147 -----------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (290)
T ss_dssp             -----------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             -----------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence                                               457899999999999655566788999999999999999 78888


Q ss_pred             cccccCCCEEeCCCCcccc
Q 038149          750 FSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       750 l~~l~~L~~L~Ls~N~l~~  768 (844)
                      +..+.+|+.|+|++|.+..
T Consensus       191 ~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          191 FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTCCCSEEECCSCCBCC
T ss_pred             hcccccCCeEEeCCCCccC
Confidence            9899999999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.2e-24  Score=232.17  Aligned_cols=182  Identities=20%  Similarity=0.159  Sum_probs=80.7

Q ss_pred             EeCcCcccCCcCCccccCCCCcCEecCCCCcCccccc----ccccCCC-CCcEEEccCcccCcCCChhhhcC-----CCC
Q 038149          448 MNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLE----VGLLNAS-SLYVLDVSNNMLSGQLPRWIGKF-----SNL  517 (844)
Q Consensus       448 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l-----~~L  517 (844)
                      +.+++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3445555554444443334445555555555544333    3344444 45555555555544444444332     445


Q ss_pred             CEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCC-CCCcEEECCCCccccccCcccc----C-CCCCCEE
Q 038149          518 DVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH-SSLRYLFPHNNSLSGTIPNALL----Q-SSQLTTL  591 (844)
Q Consensus       518 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~----~-l~~L~~L  591 (844)
                      ++|++++|.+++..+..+...                   .... ++|++|++++|++++..+..+.    . .++|++|
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  143 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKT-------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL  143 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred             cEEECcCCcCChHHHHHHHHH-------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence            555555554443333322111                   0011 3444444444444433332222    2 2355555


Q ss_pred             ECCCCcCCccc----chhhhCCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEEcCCCcccc
Q 038149          592 DLRDNEFSGNI----AHLINEDS-NLRALLLRGNNLQGNIPEPL----CHL-RKLAIVDISYNTLNG  648 (844)
Q Consensus       592 ~Ls~N~l~~~~----~~~l~~l~-~L~~L~L~~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~  648 (844)
                      ++++|++++..    +..+..++ +|++|+|++|++++..+..+    ..+ ++|+.|||++|.+++
T Consensus       144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            55555555322    22333333 55555555555554443322    222 355666666665553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=238.06  Aligned_cols=241  Identities=19%  Similarity=0.239  Sum_probs=155.3

Q ss_pred             cccccCCCCCcEEEccCcccCcCCCh----hhhcCCCCCEEeCCCCc---ccccCCccc-------cCCCCCCEEecCCC
Q 038149          484 EVGLLNASSLYVLDVSNNMLSGQLPR----WIGKFSNLDVLLMSRNS---FEGDVSVQL-------SNLEVARILDISEN  549 (844)
Q Consensus       484 ~~~~~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~ls~n~---l~~~~~~~l-------~~l~~L~~L~ls~n  549 (844)
                      +..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.   +.+.+|..+       ..+           
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-----------   93 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-----------   93 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-----------
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-----------
Confidence            33444555666666666665543222    24455556666665542   233333332       344           


Q ss_pred             cCcccCCCCCCCCCCcEEECCCCcccc----ccCccccCCCCCCEEECCCCcCCcccchhhh----CC---------CCC
Q 038149          550 KLYGPLEFSSNHSSLRYLFPHNNSLSG----TIPNALLQSSQLTTLDLRDNEFSGNIAHLIN----ED---------SNL  612 (844)
Q Consensus       550 ~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~----~l---------~~L  612 (844)
                                  ++|++|++++|.+++    .+|..+..+++|++|+|++|.++...+..+.    .+         ++|
T Consensus        94 ------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L  161 (386)
T 2ca6_A           94 ------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL  161 (386)
T ss_dssp             ------------TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ------------CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence                        455555555555554    3566677777777777777777644333333    33         778


Q ss_pred             CEEEccCCccc-ccCC---cccCCCCCCCEEEcCCCcccc-----CCCchhhccccccccCcccccccccCCCccccccc
Q 038149          613 RALLLRGNNLQ-GNIP---EPLCHLRKLAIVDISYNTLNG-----PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRES  683 (844)
Q Consensus       613 ~~L~L~~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (844)
                      ++|+|++|+++ +.+|   ..+..+++|+.|++++|+++.     .+|..+..                           
T Consensus       162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---------------------------  214 (386)
T 2ca6_A          162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------------------------  214 (386)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG---------------------------
T ss_pred             cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc---------------------------
Confidence            88888888776 3344   356667788888888887752     11212222                           


Q ss_pred             ccceeeeeeeccccccccccccccceEEEeecCccc----CCCCchhhhccccCeEeccCcccccc----cCcccc--cc
Q 038149          684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT----GDIPSEIGYLGEIHALNLSNNFLSGS----IPRSFS--NL  753 (844)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l  753 (844)
                                           +++|++|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.  .+
T Consensus       215 ---------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          215 ---------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             ---------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             ---------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence                                 457788888888885    56777888888888888888888866    566663  38


Q ss_pred             cCCCEEeCCCCcccc----cCCccc-cCCCCCCEEEccCCcccccCC
Q 038149          754 KMTESMDLSYNKLNG----QIPPEL-GELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       754 ~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      ++|+.|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888888888888887    477777 568888888888888887664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.9e-24  Score=231.69  Aligned_cols=260  Identities=20%  Similarity=0.173  Sum_probs=180.9

Q ss_pred             ecCCCCcCcccccccccCCCCCcEEEccCcccCcCCC----hhhhcCC-CCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149          472 LFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP----RWIGKFS-NLDVLLMSRNSFEGDVSVQLSNLEVARILDI  546 (844)
Q Consensus       472 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p----~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l  546 (844)
                      +.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+        
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--------   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI--------   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence            4556666666666555555556666666666665444    4555555 56666666666555444433332        


Q ss_pred             CCCcCcccCCCCCC-CCCCcEEECCCCccccccCcc----ccCC-CCCCEEECCCCcCCcccchhhhC-----CCCCCEE
Q 038149          547 SENKLYGPLEFSSN-HSSLRYLFPHNNSLSGTIPNA----LLQS-SQLTTLDLRDNEFSGNIAHLINE-----DSNLRAL  615 (844)
Q Consensus       547 s~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L  615 (844)
                                 ... .++|++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+..     .++|++|
T Consensus        75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  143 (362)
T 3goz_A           75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL  143 (362)
T ss_dssp             -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred             -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence                       001 145566666666666555553    4444 89999999999999877765543     3699999


Q ss_pred             EccCCcccccC----CcccCCCC-CCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeee
Q 038149          616 LLRGNNLQGNI----PEPLCHLR-KLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVK  690 (844)
Q Consensus       616 ~L~~N~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (844)
                      +|++|++++..    +..+..++ +|+.|+|++|++++..+..+...-                                
T Consensus       144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------  191 (362)
T 3goz_A          144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------  191 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------
T ss_pred             EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------
Confidence            99999998543    44455565 999999999999987776665420                                


Q ss_pred             eeecccccccccccc-ccceEEEeecCcccCC----CCchhhhc-cccCeEeccCcccccccC----cccccccCCCEEe
Q 038149          691 FMAKNRYESYKGDVL-KYMTGLDLSSNELTGD----IPSEIGYL-GEIHALNLSNNFLSGSIP----RSFSNLKMTESMD  760 (844)
Q Consensus       691 ~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~  760 (844)
                                  ... ++|++|||++|++++.    ++..+..+ ++|++|+|++|.+++..+    ..+..+++|+.|+
T Consensus       192 ------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          192 ------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             ------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred             ------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence                        002 3789999999999963    56666664 599999999999997554    3457789999999


Q ss_pred             CCCCccccc-------CCccccCCCCCCEEEccCCcccccC
Q 038149          761 LSYNKLNGQ-------IPPELGELSFLAIFNVSYNNLSGTV  794 (844)
Q Consensus       761 Ls~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~i  794 (844)
                      |++|.+.+.       ++..+..+++|+.||+++|++.+..
T Consensus       260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            999995533       3446788899999999999998763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.4e-22  Score=205.22  Aligned_cols=212  Identities=19%  Similarity=0.185  Sum_probs=158.3

Q ss_pred             CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149          563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS  642 (844)
Q Consensus       563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  642 (844)
                      ..+.++++++.++ .+|..+.  +.++.|++++|++++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3456666666666 5565554  578888888888888777788888888888888888888777788888899999999


Q ss_pred             CCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC
Q 038149          643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI  722 (844)
Q Consensus       643 ~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  722 (844)
                      +|++++..|..|..                                                +++|++|+|++|++++..
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~l~~~~  123 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------LTQLDKLYLGGNQLKSLP  123 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred             CCcccccChhHhcc------------------------------------------------cCCCCEEEcCCCcCCCcC
Confidence            99888666555544                                                457888999999999666


Q ss_pred             CchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCC
Q 038149          723 PSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN  802 (844)
Q Consensus       723 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  802 (844)
                      +..+..+++|++|+|++|+|++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++..+....+..
T Consensus       124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~  203 (251)
T 3m19_A          124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ  203 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHH
T ss_pred             hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHH
Confidence            66778899999999999999977777899999999999999999988888899999999999999999887443311111


Q ss_pred             ------cCccccCCCCCCcCccCCCCCCCC
Q 038149          803 ------FDESNYRGNPYLCGPAVRKNCSSE  826 (844)
Q Consensus       803 ------~~~~~~~gn~~lc~~~~~~~c~~~  826 (844)
                            .......|+. +|+.+-...|...
T Consensus       204 ~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          204 WIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             HHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHHhcccceeeccCcc-cccCCCcCccCCC
Confidence                  1111233443 5655555567654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=9.6e-22  Score=201.82  Aligned_cols=192  Identities=28%  Similarity=0.372  Sum_probs=158.8

Q ss_pred             CCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCC
Q 038149           49 DCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLK  128 (844)
Q Consensus        49 ~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~  128 (844)
                      +||.|.|++|..   ..+.+++++..+.   .+       + ..+  .+++++|+|++|.+.+..+    ..+.++++|+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~---~~-------p-~~~--~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~   62 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD---SV-------P-SGI--PADTEKLDLQSTGLATLSD----ATFRGLTKLT   62 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS---SC-------C-SCC--CTTCCEEECTTSCCCCCCT----TTTTTCTTCC
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc---cc-------C-CCC--CCCCCEEEccCCCcCccCH----hHhcCcccCC
Confidence            699999999963   2345778777651   11       1 111  2589999999999998877    5788999999


Q ss_pred             EEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEcc
Q 038149          129 ILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN  208 (844)
Q Consensus       129 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~  208 (844)
                      +|+|++|.+++..+..|.++++|++|+|++|.++.  ++...|..+++|++|+|++|+++ .++...+..+++|++|+|+
T Consensus        63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECc
Confidence            99999999999888889999999999999999964  55567889999999999999998 6666678889999999999


Q ss_pred             CCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCc
Q 038149          209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES  264 (844)
Q Consensus       209 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~  264 (844)
                      +|.+++..+..|+++++|++|++++|+++ .++...+..+++|++|++++|.+.+.
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999877778999999999999999998 45547888999999999999988764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5.9e-24  Score=233.50  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=174.2

Q ss_pred             CCccccCCCCcCEecCCCCcCccccc----ccccCCCCCcEEEccCc---ccCcCCChhh-------hcCCCCCEEeCCC
Q 038149          459 IFPKYMNLAKLVFLFLNDNQFTGRLE----VGLLNASSLYVLDVSNN---MLSGQLPRWI-------GKFSNLDVLLMSR  524 (844)
Q Consensus       459 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n---~l~~~~p~~l-------~~l~~L~~L~ls~  524 (844)
                      ++..+..+++|++|++++|.++...+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            45667789999999999999987643    44778999999999996   4555666655       6899999999999


Q ss_pred             Ccccc----cCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCC---------CCCCEE
Q 038149          525 NSFEG----DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS---------SQLTTL  591 (844)
Q Consensus       525 n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l---------~~L~~L  591 (844)
                      |.+.+    .++..+..+++|++|++++|.+....+.                   .++..+..+         ++|++|
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhhhhhcccCCCCcEE
Confidence            99987    4666778888888888888877432221                   112222222         667777


Q ss_pred             ECCCCcCC-cccc---hhhhCCCCCCEEEccCCccc--c---cCCcccCCCCCCCEEEcCCCccc----cCCCchhhccc
Q 038149          592 DLRDNEFS-GNIA---HLINEDSNLRALLLRGNNLQ--G---NIPEPLCHLRKLAIVDISYNTLN----GPIPSCFTNIS  658 (844)
Q Consensus       592 ~Ls~N~l~-~~~~---~~l~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~  658 (844)
                      ++++|+++ +.++   ..+..+++|++|++++|+++  |   ..|..+..+++|+.|+|++|.++    +.+|..+..  
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--  242 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--  242 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence            77777765 3334   34556677777777777766  2   33446667777777777777775    334444433  


Q ss_pred             cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC----CCchhhh--cccc
Q 038149          659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD----IPSEIGY--LGEI  732 (844)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~~--l~~L  732 (844)
                                                                    +++|++|+|++|++++.    +|..+..  +++|
T Consensus       243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L  276 (386)
T 2ca6_A          243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  276 (386)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence                                                          34677777887777754    4555633  7888


Q ss_pred             CeEeccCccccc----ccCccc-ccccCCCEEeCCCCcccccCC
Q 038149          733 HALNLSNNFLSG----SIPRSF-SNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       733 ~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      ++|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888888888887    477777 667888888888888887664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4.6e-23  Score=222.00  Aligned_cols=249  Identities=18%  Similarity=0.205  Sum_probs=165.9

Q ss_pred             CcEEEccCcccCcCCChhhhcC--CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc-CCCCC-CCCCCcEEE
Q 038149          493 LYVLDVSNNMLSGQLPRWIGKF--SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP-LEFSS-NHSSLRYLF  568 (844)
Q Consensus       493 L~~L~ls~n~l~~~~p~~l~~l--~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~~-~~~~L~~L~  568 (844)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++... .+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            444444444443   2333333  4555555555555444333 33455555555555554432 22222 455666666


Q ss_pred             CCCCccccccCccccCCCCCCEEECCCC-cCCc-ccchhhhCCCCCCEEEccCC-ccccc-CCcccCCCC-CCCEEEcCC
Q 038149          569 PHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSG-NIAHLINEDSNLRALLLRGN-NLQGN-IPEPLCHLR-KLAIVDISY  643 (844)
Q Consensus       569 l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~  643 (844)
                      +++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            6666666677777888888888888888 6765 36677788888888888888 88754 566677888 889999988


Q ss_pred             C--ccc-cCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCc-cc
Q 038149          644 N--TLN-GPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE-LT  719 (844)
Q Consensus       644 N--~l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~  719 (844)
                      |  .++ +.+|..+..                                                +++|++|++++|. ++
T Consensus       205 ~~~~~~~~~l~~~~~~------------------------------------------------~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRR------------------------------------------------CPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             CGGGSCHHHHHHHHHH------------------------------------------------CTTCSEEECTTCTTCC
T ss_pred             CcccCCHHHHHHHHhh------------------------------------------------CCCCCEEeCCCCCcCC
Confidence            8  444 233443332                                                5678899999998 77


Q ss_pred             CCCCchhhhccccCeEeccCcc-cccccCcccccccCCCEEeCCCCcccccCCccccCC-CCCCEEEccCCcccccCCCC
Q 038149          720 GDIPSEIGYLGEIHALNLSNNF-LSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       720 g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~  797 (844)
                      +..+..++.+++|++|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..|..|++++|+++|..|..
T Consensus       237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            7788888999999999999995 33332336888999999999998 332   234444 34777789999999988864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=215.99  Aligned_cols=231  Identities=16%  Similarity=0.141  Sum_probs=139.3

Q ss_pred             CCcEEEccCcccCcC----CChhhhcCCCCCEEeCCCCcccccCCccc--cCCCCCCEEecCCCcCcccCCCCCCCCCCc
Q 038149          492 SLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGDVSVQL--SNLEVARILDISENKLYGPLEFSSNHSSLR  565 (844)
Q Consensus       492 ~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  565 (844)
                      .++.+.+.++.++..    ++. +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+...      
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------  137 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------  137 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------
Confidence            455555555554321    111 1234557777777777776666666  666777777777776654332110      


Q ss_pred             EEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc--C--CcccCCCCCCCEEEc
Q 038149          566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN--I--PEPLCHLRKLAIVDI  641 (844)
Q Consensus       566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L  641 (844)
                                   ...+..+++|++|++++|++.+..+..++.+++|++|+|++|++.+.  +  +..+..+++|++|+|
T Consensus       138 -------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          138 -------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             -------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred             -------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence                         01233455666666666666655555666666666666666665432  1  222356677777777


Q ss_pred             CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149          642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD  721 (844)
Q Consensus       642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  721 (844)
                      ++|+++. +|.....+                                            ...+++|++|||++|++++.
T Consensus       205 s~N~l~~-l~~~~~~l--------------------------------------------~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          205 RNTGMET-PTGVCAAL--------------------------------------------AAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CSSCCCC-HHHHHHHH--------------------------------------------HHHTCCCSSEECTTSCCCCC
T ss_pred             CCCCCCc-hHHHHHHH--------------------------------------------HhcCCCCCEEECCCCCCCcc
Confidence            7777752 22210000                                            00145677788888888777


Q ss_pred             CCchhhhc---cccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          722 IPSEIGYL---GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       722 ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      +|..+..+   ++|++|+|++|+|+ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            67777666   57888888888887 6677664  6888888888888753 33 5677888888888888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3e-22  Score=212.58  Aligned_cols=201  Identities=22%  Similarity=0.298  Sum_probs=166.9

Q ss_pred             CCCCcEEECCCCccccccCccc--cCCCCCCEEECCCCcCCcccc----hhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149          561 HSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLRDNEFSGNIA----HLINEDSNLRALLLRGNNLQGNIPEPLCHLR  634 (844)
Q Consensus       561 ~~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  634 (844)
                      .++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+++|++|+|++|++.+..|..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4557788888888888888887  889999999999999997555    3446799999999999999988889999999


Q ss_pred             CCCEEEcCCCccccC--CCc--hhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceE
Q 038149          635 KLAIVDISYNTLNGP--IPS--CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTG  710 (844)
Q Consensus       635 ~L~~L~Ls~N~l~~~--~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  710 (844)
                      +|++|+|++|++.+.  ++.  +++                                                .+++|++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------------~l~~L~~  201 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPH------------------------------------------------KFPAIQN  201 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTT------------------------------------------------SSCCCCS
T ss_pred             CCCEEECCCCCCccchhhhHHHhhh------------------------------------------------cCCCCCE
Confidence            999999999998642  111  111                                                1568999


Q ss_pred             EEeecCcccCCCCc----hhhhccccCeEeccCcccccccCcccccc---cCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149          711 LDLSSNELTGDIPS----EIGYLGEIHALNLSNNFLSGSIPRSFSNL---KMTESMDLSYNKLNGQIPPELGELSFLAIF  783 (844)
Q Consensus       711 LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  783 (844)
                      |+|++|+++ .+|.    .++.+++|++|+|++|++++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|++|
T Consensus       202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L  277 (310)
T 4glp_A          202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL  277 (310)
T ss_dssp             CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred             EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence            999999997 4444    25788999999999999999889888887   69999999999999 7888875  899999


Q ss_pred             EccCCcccccCCCCCcCCCcCccccCCCCCC
Q 038149          784 NVSYNNLSGTVPNKGQFANFDESNYRGNPYL  814 (844)
Q Consensus       784 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~l  814 (844)
                      ++++|++++. |....+..+..+.+.||+..
T Consensus       278 ~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          278 DLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             ECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             ECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            9999999973 44456778888899999753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=8.6e-23  Score=219.86  Aligned_cols=198  Identities=16%  Similarity=0.129  Sum_probs=117.8

Q ss_pred             CCCcEEeCcCcccCCcCCccccCC--CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcC-CChhhhcCCCCCE
Q 038149          443 VSLEFMNLSHNYFDGQIFPKYMNL--AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ-LPRWIGKFSNLDV  519 (844)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~  519 (844)
                      ..++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34778888888776   3445555  7788888888888766554 45678888888888887765 6777788888888


Q ss_pred             EeCCCCcccccCCccccCCCCCCEEecCCC-cCccc-CCCCC-CCCCCcEEECCCC-ccccc-cCccccCCC-CCCEEEC
Q 038149          520 LLMSRNSFEGDVSVQLSNLEVARILDISEN-KLYGP-LEFSS-NHSSLRYLFPHNN-SLSGT-IPNALLQSS-QLTTLDL  593 (844)
Q Consensus       520 L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~-~~~~~-~~~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~L~L  593 (844)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++... .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            888888887777777777777777777777 44421 22211 3444444554444 44432 333444444 4444444


Q ss_pred             CCC--cCC-cccchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEcCCC
Q 038149          594 RDN--EFS-GNIAHLINEDSNLRALLLRGNN-LQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       594 s~N--~l~-~~~~~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            444  232 2333444444444444444444 33333334444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2e-21  Score=197.96  Aligned_cols=200  Identities=20%  Similarity=0.168  Sum_probs=130.5

Q ss_pred             CCCcEEECCCCccccccCccccCCCCCCEEECCCCc-CCcccchhhhCCCCCCEEEccC-CcccccCCcccCCCCCCCEE
Q 038149          562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE-FSGNIAHLINEDSNLRALLLRG-NNLQGNIPEPLCHLRKLAIV  639 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L  639 (844)
                      .+|+.|++++|++++..+..|..+++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|..+++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            356666666666665555567777777777777775 6655555677777777777776 77776656667777777777


Q ss_pred             EcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecC-cc
Q 038149          640 DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN-EL  718 (844)
Q Consensus       640 ~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N-~l  718 (844)
                      ++++|++++ +|. |..+..                                             +..|++|++++| ++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~---------------------------------------------L~~L~~L~l~~N~~l  143 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYS---------------------------------------------TDIFFILEITDNPYM  143 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCB---------------------------------------------CCSEEEEEEESCTTC
T ss_pred             eCCCCCCcc-ccc-cccccc---------------------------------------------cccccEEECCCCcch
Confidence            777777764 444 433210                                             122347777777 77


Q ss_pred             cCCCCchhhhccccC-eEeccCcccccccCcccccccCCCEEeCCCCc-ccccCCccccCC-CCCCEEEccCCcccccCC
Q 038149          719 TGDIPSEIGYLGEIH-ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK-LNGQIPPELGEL-SFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       719 ~g~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip  795 (844)
                      ++..+..|..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|
T Consensus       144 ~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~  221 (239)
T 2xwt_C          144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP  221 (239)
T ss_dssp             CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred             hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CC
Confidence            755555677777777 7777777777 455443333677777777774 776656667777 777777777777764 44


Q ss_pred             CCCcCCCcCccccCCC
Q 038149          796 NKGQFANFDESNYRGN  811 (844)
Q Consensus       796 ~~~~~~~~~~~~~~gn  811 (844)
                      .. .|..+..+.+.++
T Consensus       222 ~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          222 SK-GLEHLKELIARNT  236 (239)
T ss_dssp             CT-TCTTCSEEECTTC
T ss_pred             hh-HhccCceeeccCc
Confidence            33 4555665555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.6e-21  Score=196.07  Aligned_cols=198  Identities=18%  Similarity=0.182  Sum_probs=135.7

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCC
Q 038149          516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD  595 (844)
Q Consensus       516 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  595 (844)
                      +|++|++++|.+++..+..|.++++|++|++++|+.                      +++..+..|..+++|++|++++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~----------------------l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT----------------------LQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS----------------------CCEECTTTEESCTTCCEEEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC----------------------cceeCHhHcCCCcCCcEEECCC
Confidence            566666666666655555555555555555555541                      4434444667777777777777


Q ss_pred             -CcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC---EEEcCCC-ccccCCCchhhccccccccCcccccc
Q 038149          596 -NEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA---IVDISYN-TLNGPIPSCFTNISLWMEKGNYYNST  670 (844)
Q Consensus       596 -N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~~~~~~~~~~~~  670 (844)
                       |++++..+..|..+++|++|++++|++++ +|. +..+++|+   .|++++| .+++..+..|.+              
T Consensus        90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------------  153 (239)
T 2xwt_C           90 TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------------  153 (239)
T ss_dssp             ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------------
T ss_pred             CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------------
Confidence             77776666677777777777777777774 555 67777777   8888888 776555545544              


Q ss_pred             cccCCCcccccccccceeeeeeeccccccccccccccce-EEEeecCcccCCCCchhhhccccCeEeccCcc-cccccCc
Q 038149          671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT-GLDLSSNELTGDIPSEIGYLGEIHALNLSNNF-LSGSIPR  748 (844)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~  748 (844)
                                                        +++|+ +|++++|+++ .+|......++|+.|+|++|+ +++..+.
T Consensus       154 ----------------------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          154 ----------------------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             ----------------------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             ----------------------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence                                              44677 8888888887 566544444788888888884 8866667


Q ss_pred             ccccc-cCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149          749 SFSNL-KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN  789 (844)
Q Consensus       749 ~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  789 (844)
                      .|..+ ++|+.||+++|+++ .+|..  .+++|+.|+++++.
T Consensus       199 ~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             HhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            78888 88888888888888 45544  67778888887763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.4e-20  Score=199.10  Aligned_cols=195  Identities=17%  Similarity=0.290  Sum_probs=106.1

Q ss_pred             hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCE
Q 038149          511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTT  590 (844)
Q Consensus       511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  590 (844)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+                         +..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-------------------------~~~l~~L~~   89 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-------------------------LKNLTKITE   89 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------------GTTCCSCCE
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------------HccCCCCCE
Confidence            3456677777777777764 33 45666666666666666553332                         444555555


Q ss_pred             EECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccc
Q 038149          591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNST  670 (844)
Q Consensus       591 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~  670 (844)
                      |++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++..+  ++.              
T Consensus        90 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------  149 (308)
T 1h6u_A           90 LELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG--------------  149 (308)
T ss_dssp             EECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred             EEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence            55555555432 2 344555555555555555532 2 25555555555555555543221  211              


Q ss_pred             cccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCccc
Q 038149          671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSF  750 (844)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  750 (844)
                                                        +++|++|+|++|++++ ++. +..+++|+.|++++|++++..+  +
T Consensus       150 ----------------------------------l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l  191 (308)
T 1h6u_A          150 ----------------------------------LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--L  191 (308)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ----------------------------------CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--h
Confidence                                              3455556666666553 232 5556666666666666654332  5


Q ss_pred             ccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          751 SNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       751 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      ..+++|+.|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            556666666666666654332  5566666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.4e-20  Score=197.39  Aligned_cols=209  Identities=22%  Similarity=0.275  Sum_probs=122.7

Q ss_pred             EEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCC
Q 038149          398 YLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN  477 (844)
Q Consensus       398 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  477 (844)
                      .+.+..+.+++.+  ....+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus        23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (308)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence            3344445544322  2445667777777777665 3442  3556666666666666655432  556666666666666


Q ss_pred             cCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC
Q 038149          478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF  557 (844)
Q Consensus       478 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  557 (844)
                      ++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+  +..+                   
T Consensus        96 ~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l-------------------  150 (308)
T 1h6u_A           96 PLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL-------------------  150 (308)
T ss_dssp             CCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-------------------
T ss_pred             cCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-------------------
Confidence            65542 2 355555666666666655532 2 25555555555555555543322  4444                   


Q ss_pred             CCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 038149          558 SSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA  637 (844)
Q Consensus       558 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  637 (844)
                          ++|+.|++++|++++. +. +..+++|+.|++++|++++..+  +..+++|++|++++|++++..  .+..+++|+
T Consensus       151 ----~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~  220 (308)
T 1h6u_A          151 ----TNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLF  220 (308)
T ss_dssp             ----TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred             ----CCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence                4455555555555532 22 6667777777777777775433  667777777777777777544  267777777


Q ss_pred             EEEcCCCcccc
Q 038149          638 IVDISYNTLNG  648 (844)
Q Consensus       638 ~L~Ls~N~l~~  648 (844)
                      .|++++|++++
T Consensus       221 ~L~l~~N~i~~  231 (308)
T 1h6u_A          221 IVTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEccCCeeec
Confidence            77777777763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=9.8e-20  Score=206.57  Aligned_cols=189  Identities=24%  Similarity=0.361  Sum_probs=125.6

Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECC
Q 038149          515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR  594 (844)
Q Consensus       515 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  594 (844)
                      .+++.|++++|.+++ +|..+  .++|++|++++|.+. .+|  ..+++|+.|++++|++++ +|. +..  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            378888888888876 55544  367888888888877 444  346777777777777775 555 444  67777777


Q ss_pred             CCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccC
Q 038149          595 DNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLA  674 (844)
Q Consensus       595 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~  674 (844)
                      +|++++ +|.   .+++|++|+|++|++++ +|.   .+++|+.|+|++|+|++ +|. |.                   
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------  179 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------  179 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------------------
Confidence            777775 444   46777777777777774 554   45667777777777764 443 31                   


Q ss_pred             CCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcccc-------CeEeccCcccccccC
Q 038149          675 LPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEI-------HALNLSNNFLSGSIP  747 (844)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip  747 (844)
                                                     ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|
T Consensus       180 -------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp  223 (571)
T 3cvr_A          180 -------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIP  223 (571)
T ss_dssp             -------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCC
T ss_pred             -------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecC
Confidence                                           24666777777777 5665 443  55       67777777776 566


Q ss_pred             cccccccCCCEEeCCCCcccccCCccccCCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIPPELGELS  778 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  778 (844)
                      ..+..+++|+.|+|++|++++.+|..+..++
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            6666677777777777777776666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=8.5e-20  Score=207.06  Aligned_cols=197  Identities=25%  Similarity=0.295  Sum_probs=161.7

Q ss_pred             CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149          491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH  570 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  570 (844)
                      .+++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. + ..+|+.|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CTTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hcCCCEEECC
Confidence            389999999999986 67655  378999999999998 566   457899999999999988 555 3 2299999999


Q ss_pred             CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149          571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI  650 (844)
Q Consensus       571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  650 (844)
                      +|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+|+ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            999996 666   68899999999999996 565   57899999999999996 777 66  89999999999998 66


Q ss_pred             CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcc
Q 038149          651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG  730 (844)
Q Consensus       651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  730 (844)
                      |. |.. . +                                         ....+.|+.|+|++|+|+ .+|..+..++
T Consensus       196 p~-~~~-~-L-----------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          196 PA-VPV-R-N-----------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             CC-CC---------------------------------------------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             hh-HHH-h-h-----------------------------------------hcccccceEEecCCCcce-ecCHHHhcCC
Confidence            65 432 0 0                                         000234689999999999 7899999999


Q ss_pred             ccCeEeccCcccccccCcccccccC
Q 038149          731 EIHALNLSNNFLSGSIPRSFSNLKM  755 (844)
Q Consensus       731 ~L~~L~Ls~N~l~~~ip~~l~~l~~  755 (844)
                      +|+.|+|++|.+++.+|..+..++.
T Consensus       231 ~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          231 PTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            9999999999999999999888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.8e-19  Score=194.52  Aligned_cols=153  Identities=14%  Similarity=0.081  Sum_probs=76.0

Q ss_pred             CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCC
Q 038149          470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISE  548 (844)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~  548 (844)
                      ++++.++++++ .+|..+  .+++++|++++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++..     
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~-----   83 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE-----   83 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE-----
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh-----
Confidence            34555555555 344433  3455666666666654333445555566666666555544333 23444444432     


Q ss_pred             CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccC-CcccccCC
Q 038149          549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRG-NNLQGNIP  627 (844)
Q Consensus       549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~p  627 (844)
                                       .+.+.+|+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+
T Consensus        84 -----------------~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~  146 (350)
T 4ay9_X           84 -----------------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  146 (350)
T ss_dssp             -----------------EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred             -----------------hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence                             233334444444455555555555555555555544444444444555555543 34443333


Q ss_pred             cccCCCC-CCCEEEcCCCccc
Q 038149          628 EPLCHLR-KLAIVDISYNTLN  647 (844)
Q Consensus       628 ~~l~~l~-~L~~L~Ls~N~l~  647 (844)
                      ..+..+. .++.|+|++|+|+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCC
T ss_pred             cchhhcchhhhhhcccccccc
Confidence            3444442 3555666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=8.6e-20  Score=181.45  Aligned_cols=175  Identities=23%  Similarity=0.242  Sum_probs=135.0

Q ss_pred             cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555555 444433  357888888888888766667788888888888888888666666788888888888888


Q ss_pred             ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc
Q 038149          645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS  724 (844)
Q Consensus       645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  724 (844)
                      ++++..+..|.+                                                +++|++|+|++|++++..+.
T Consensus        87 ~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           87 QLQSLPNGVFDK------------------------------------------------LTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             CCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHhHhcC------------------------------------------------ccCCCEEEcCCCcCcccCHh
Confidence            887555554544                                                45788888999988876666


Q ss_pred             hhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149          725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       725 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      .+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.       ++.|++|+++.|+++|.+|..
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred             HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence            788889999999999999877776788899999999999988754       457889999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=8.8e-20  Score=181.38  Aligned_cols=163  Identities=21%  Similarity=0.176  Sum_probs=120.6

Q ss_pred             CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149          562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI  641 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  641 (844)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            45666777777776555566777788888888888887666666777888888888888887666666778888888888


Q ss_pred             CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149          642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD  721 (844)
Q Consensus       642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  721 (844)
                      ++|++++..+..|..                                                +++|++|+|++|++++.
T Consensus       108 ~~N~l~~~~~~~~~~------------------------------------------------l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDK------------------------------------------------LTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             CSSCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCSCC
T ss_pred             CCCcCcccCHhHhcc------------------------------------------------CCcCCEEECCCCcccee
Confidence            888887555544443                                                45677888888888866


Q ss_pred             CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCC
Q 038149          722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSF  779 (844)
Q Consensus       722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  779 (844)
                      .+..+..+++|++|++++|.+.+.       +++|+.|+++.|+++|.+|..++.++.
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            666678888888888888877643       446788888888888888887776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=9.1e-20  Score=182.56  Aligned_cols=157  Identities=20%  Similarity=0.179  Sum_probs=119.3

Q ss_pred             CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149          589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY  667 (844)
Q Consensus       589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~  667 (844)
                      +.+++++|.++. +|..+  ...+++|+|++|++++..| ..|..+++|+.|+|++|+|++..|..|.+           
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            356666666663 45433  2345677777777776544 34677777778888877777666655554           


Q ss_pred             ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149          668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP  747 (844)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  747 (844)
                                                           +++|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus        80 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           80 -------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             -------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence                                                 4467788888888887777778888888888888888888888


Q ss_pred             cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  796 (844)
                      ..|..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+-
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            8888888999999999999888888888889999999999998887663

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=5e-19  Score=191.04  Aligned_cols=241  Identities=17%  Similarity=0.085  Sum_probs=155.1

Q ss_pred             cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCC-ccccCCCCcCE-ecC
Q 038149          397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIF-PKYMNLAKLVF-LFL  474 (844)
Q Consensus       397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L  474 (844)
                      ++++.++++++ .+|..+  .+++++|+|++|+++ .+|...|.++++|++|+|++|++.+.++ ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34555555555 445444  245666666666664 4555545566666666666666544333 34556666554 444


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCC-CcccccCCccccCCC-CCCEEecCCCcCc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR-NSFEGDVSVQLSNLE-VARILDISENKLY  552 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~-~L~~L~ls~n~l~  552 (844)
                      .+|+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .++.|++++|++.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            55666666666677777777777777777755555555666666777754 345544445555554 5777888888887


Q ss_pred             ccCCCCCCCCCCcEEECCC-CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccC
Q 038149          553 GPLEFSSNHSSLRYLFPHN-NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC  631 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~  631 (844)
                      ...+..+...+|+.+++.+ |.++...+..|..+++|++||+++|+++...+..   +.+|+.|.+.++.--..+| .+.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            6666666677888888875 5555333456889999999999999998554444   4566666665554444677 478


Q ss_pred             CCCCCCEEEcCCCc
Q 038149          632 HLRKLAIVDISYNT  645 (844)
Q Consensus       632 ~l~~L~~L~Ls~N~  645 (844)
                      .+++|+.++++++.
T Consensus       244 ~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          244 KLVALMEASLTYPS  257 (350)
T ss_dssp             TCCSCCEEECSCHH
T ss_pred             hCcChhhCcCCCCc
Confidence            89999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4e-19  Score=177.90  Aligned_cols=155  Identities=20%  Similarity=0.243  Sum_probs=98.6

Q ss_pred             CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccc
Q 038149          589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYN  668 (844)
Q Consensus       589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~  668 (844)
                      +.++++++.++ .+|..+.  ++|++|++++|++++..+..|..+++|+.|+|++|++++..|..|.+            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            34555555555 2343332  45666666666666555556666666666666666666555555544            


Q ss_pred             cccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCc
Q 038149          669 STLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR  748 (844)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  748 (844)
                                                          +++|++|+|++|++++..+..|..+++|++|+|++|+|++..|.
T Consensus        79 ------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           79 ------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             ------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence                                                34566666666666644444456677777777777777776677


Q ss_pred             ccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccC
Q 038149          749 SFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTV  794 (844)
Q Consensus       749 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  794 (844)
                      .|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            7777777777777777777666666777777777777777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=172.09  Aligned_cols=156  Identities=21%  Similarity=0.217  Sum_probs=130.1

Q ss_pred             cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149          565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY  643 (844)
Q Consensus       565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  643 (844)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..+ ..+..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46666777666 4565553  346788888888887654 4578889999999999999888778899999999999999


Q ss_pred             CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149          644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP  723 (844)
Q Consensus       644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  723 (844)
                      |++++..|..|..                                                +++|++|+|++|++++..|
T Consensus        91 N~l~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           91 NRLENVQHKMFKG------------------------------------------------LESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             SCCCCCCGGGGTT------------------------------------------------CSSCCEEECTTSCCCCBCT
T ss_pred             CccCccCHhHhcC------------------------------------------------CcCCCEEECCCCcCCeECH
Confidence            9998777766655                                                4578899999999998889


Q ss_pred             chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149          724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      ..+..+++|++|+|++|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999999998889999999999999999999987654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=3.6e-18  Score=172.18  Aligned_cols=157  Identities=24%  Similarity=0.231  Sum_probs=118.6

Q ss_pred             CCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149          588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY  667 (844)
Q Consensus       588 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~  667 (844)
                      -+.++.++++++ .+|..+  .++|++|+|++|++++..|..+..+++|+.|+|++|+|++..+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            355666666666 344433  267777777777777777777777777888888888776444444443           


Q ss_pred             ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149          668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP  747 (844)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  747 (844)
                                                           +++|++|+|++|++++..+..+..+++|++|+|++|+|+ .+|
T Consensus        87 -------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           87 -------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             -------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence                                                 456778888888888666666788888888888888888 788


Q ss_pred             cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN  796 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  796 (844)
                      ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            8888888999999999998877667788889999999999998877663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.1e-18  Score=178.50  Aligned_cols=169  Identities=20%  Similarity=0.322  Sum_probs=105.7

Q ss_pred             CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149          562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI  641 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  641 (844)
                      ++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            344444444444442 22 35556666666666666665433  6666666666666666664 22 3666777777777


Q ss_pred             CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149          642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD  721 (844)
Q Consensus       642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  721 (844)
                      ++|++++.  ..+..                                                +++|++|++++|++++.
T Consensus       120 ~~n~i~~~--~~l~~------------------------------------------------l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A          120 EHNGISDI--NGLVH------------------------------------------------LPQLESLYLGNNKITDI  149 (291)
T ss_dssp             TTSCCCCC--GGGGG------------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred             CCCcCCCC--hhhcC------------------------------------------------CCCCCEEEccCCcCCcc
Confidence            77766542  12221                                                44667777777777743


Q ss_pred             CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                        ..++.+++|++|++++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence              456777777777777777775444  7777777777777777774 34 36777777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.3e-18  Score=188.67  Aligned_cols=112  Identities=22%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             CEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCcccc-CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC
Q 038149          542 RILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALL-QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN  620 (844)
Q Consensus       542 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  620 (844)
                      +.++++++.+.. +|... ...++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            456666666653 22221 23455666666666655555554 5566666666666666555555555666666666666


Q ss_pred             cccccCCcccCCCCCCCEEEcCCCccccCCCchhh
Q 038149          621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT  655 (844)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  655 (844)
                      ++++..+..|..+++|+.|+|++|+|++..|..|.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence            66555455555556666666666655544444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=4.8e-18  Score=170.01  Aligned_cols=153  Identities=22%  Similarity=0.220  Sum_probs=126.6

Q ss_pred             cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666666 5565543  67888888888888777778888889999999999998888888999999999999999


Q ss_pred             ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc
Q 038149          645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS  724 (844)
Q Consensus       645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  724 (844)
                      +|++..+..|..                                                +++|++|+|++|++++..|.
T Consensus        91 ~l~~l~~~~f~~------------------------------------------------l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           91 KITELPKSLFEG------------------------------------------------LFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             CCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHhHccC------------------------------------------------CCCCCEEECCCCCCCEeCHH
Confidence            988544444544                                                45788999999999988888


Q ss_pred             hhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       725 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                      .|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999999999999999998888889999999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.2e-18  Score=186.84  Aligned_cols=180  Identities=25%  Similarity=0.211  Sum_probs=151.2

Q ss_pred             CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhh-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149          564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN-EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS  642 (844)
Q Consensus       564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  642 (844)
                      -+.++++++.++ .+|..+.  ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999998 5776654  4589999999999988888887 89999999999999998888889999999999999


Q ss_pred             CCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC
Q 038149          643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI  722 (844)
Q Consensus       643 ~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  722 (844)
                      +|+|++..+..|.+                                                +++|+.|+|++|++++..
T Consensus        97 ~N~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~i~~~~  128 (361)
T 2xot_A           97 SNHLHTLDEFLFSD------------------------------------------------LQALEVLLLYNNHIVVVD  128 (361)
T ss_dssp             SSCCCEECTTTTTT------------------------------------------------CTTCCEEECCSSCCCEEC
T ss_pred             CCcCCcCCHHHhCC------------------------------------------------CcCCCEEECCCCcccEEC
Confidence            99998766666654                                                457899999999999888


Q ss_pred             CchhhhccccCeEeccCcccccccCccc---ccccCCCEEeCCCCcccccCCccccCCCC--CCEEEccCCcccccC
Q 038149          723 PSEIGYLGEIHALNLSNNFLSGSIPRSF---SNLKMTESMDLSYNKLNGQIPPELGELSF--LAIFNVSYNNLSGTV  794 (844)
Q Consensus       723 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~ls~N~l~g~i  794 (844)
                      |..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+..
T Consensus       129 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            8899999999999999999995444444   67999999999999999766677888877  488999999998653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.4e-17  Score=167.72  Aligned_cols=156  Identities=21%  Similarity=0.227  Sum_probs=131.3

Q ss_pred             CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149          564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY  643 (844)
Q Consensus       564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  643 (844)
                      .+.++.+++.++ .+|..+.  ++|++|++++|++++..|..+..+++|++|+|++|+++...+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777777766 5665543  7899999999999988888899999999999999999866667788999999999999


Q ss_pred             CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149          644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP  723 (844)
Q Consensus       644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  723 (844)
                      |+|++..+..|..                                                +++|++|+|++|+++ .+|
T Consensus        98 N~l~~l~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           98 NQLTVLPSAVFDR------------------------------------------------LVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             SCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCC-SCC
T ss_pred             CcCCccChhHhCc------------------------------------------------chhhCeEeccCCccc-ccC
Confidence            9998666655554                                                467899999999999 889


Q ss_pred             chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149          724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      ..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+.+..+
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999999999999999997777789999999999999999986543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=7.1e-18  Score=193.62  Aligned_cols=190  Identities=19%  Similarity=0.265  Sum_probs=132.5

Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS  523 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  523 (844)
                      .+..+.+..+.+.+..+  +..++.|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45555666666665432  45677888888888888743 3 47778888888888888886544  7788888888888


Q ss_pred             CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc
Q 038149          524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA  603 (844)
Q Consensus       524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  603 (844)
                      +|.+.+. + .+..+++|+.|++++|.+.+. +....+++|+.|++++|.+++.  ..+..+++|+.|+|++|++.+..|
T Consensus        96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SSCCCCC-T-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCCC-h-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            8888752 3 577778888888888877653 3333667777777777777654  456677777777777777776555


Q ss_pred             hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc
Q 038149          604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG  648 (844)
Q Consensus       604 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  648 (844)
                        +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence              66677777777777777643  346667777777777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=2e-20  Score=213.70  Aligned_cols=78  Identities=19%  Similarity=0.158  Sum_probs=47.4

Q ss_pred             ccceEEEeecCcccCCCCchhhhccccCeEeccCccccccc-CcccccccCCCEEeCCCCcccccCCcc---ccCCCCCC
Q 038149          706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSI-PRSFSNLKMTESMDLSYNKLNGQIPPE---LGELSFLA  781 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip~~---l~~l~~L~  781 (844)
                      ++|+.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|..   +..+++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            355566666666664 55 5666666666666666666555 666666666666666666666554422   23356666


Q ss_pred             EEEc
Q 038149          782 IFNV  785 (844)
Q Consensus       782 ~L~l  785 (844)
                      +||+
T Consensus       564 ~L~l  567 (567)
T 1dce_A          564 SILT  567 (567)
T ss_dssp             EEEC
T ss_pred             ccCC
Confidence            6653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=5.6e-18  Score=165.64  Aligned_cols=114  Identities=21%  Similarity=0.293  Sum_probs=75.9

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN  784 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  784 (844)
                      +++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            34566777777777766677777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccCCcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149          785 VSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       785 ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      +++|+++|..|.......+....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            7777777766532211112223344555556543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.1e-17  Score=164.41  Aligned_cols=155  Identities=17%  Similarity=0.244  Sum_probs=103.2

Q ss_pred             cCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149          583 LQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME  662 (844)
Q Consensus       583 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~  662 (844)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|+.|++++|++++..|..++.      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            44556666777766666 344 4666667777777777554  2335666777777777777776555555443      


Q ss_pred             cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCccc
Q 038149          663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFL  742 (844)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  742 (844)
                                                                +++|++|++++|++++..|..++.+++|++|++++|.+
T Consensus       111 ------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A          111 ------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA  148 (197)
T ss_dssp             ------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred             ------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence                                                      34667777777777776777777777888888888873


Q ss_pred             ccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          743 SGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       743 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      .+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       149 i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          149 ITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            33555 57778888888888888775 44 67778888888888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.3e-17  Score=174.56  Aligned_cols=171  Identities=20%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCc
Q 038149          415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLY  494 (844)
Q Consensus       415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  494 (844)
                      ..+++|+.|++++|.+. .++.  +..+++|++|++++|++++..+  +..+++|++|++++|.+++             
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------  104 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-------------  104 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-------------
T ss_pred             hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-------------
Confidence            44555555555555554 2332  3445555555555555544322  4444444444444444442             


Q ss_pred             EEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcc
Q 038149          495 VLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSL  574 (844)
Q Consensus       495 ~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l  574 (844)
                                  +| .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+. +....+++|+.|++++|++
T Consensus       105 ------------~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          105 ------------LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             ------------GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred             ------------Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc
Confidence                        11 234444444444444444321  1233344444444444433321 1111233333333334444


Q ss_pred             ccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc
Q 038149          575 SGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ  623 (844)
Q Consensus       575 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  623 (844)
                      ++..+  +..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            33222  44555555555555555532 2 2455555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.9e-17  Score=190.17  Aligned_cols=194  Identities=20%  Similarity=0.195  Sum_probs=167.4

Q ss_pred             cccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEE
Q 038149          417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL  496 (844)
Q Consensus       417 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (844)
                      +..+..+.+..+.+.+.++   ...+++|+.|++++|.+...  +.+..+++|+.|+|++|.+.+..+  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            4456677888888875554   35778999999999999864  368899999999999999997665  8899999999


Q ss_pred             EccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc
Q 038149          497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG  576 (844)
Q Consensus       497 ~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  576 (844)
                      +|++|.+++ +| .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+. +....+++|+.|+|++|.+++
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC
Confidence            999999985 44 689999999999999999864  4588999999999999999876 444489999999999999997


Q ss_pred             ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149          577 TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI  626 (844)
Q Consensus       577 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  626 (844)
                      ..|  +..+++|+.|+|++|++++. + .+..+++|+.|+|++|++.+..
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence            766  89999999999999999974 3 5899999999999999998643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3e-17  Score=161.30  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=122.3

Q ss_pred             CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 038149          560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIV  639 (844)
Q Consensus       560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  639 (844)
                      .+++|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..|..++.+++|+.|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3455666666666666 455 57888889999999997653  3468889999999999999998888889999999999


Q ss_pred             EcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCccc
Q 038149          640 DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT  719 (844)
Q Consensus       640 ~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  719 (844)
                      ++++|++++..|..++.                                                +++|++|++++|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~------------------------------------------------l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          118 DISHSAHDDSILTKINT------------------------------------------------LPKVNSIDLSYNGAI  149 (197)
T ss_dssp             ECCSSBCBGGGHHHHTT------------------------------------------------CSSCCEEECCSCTBC
T ss_pred             EecCCccCcHhHHHHhh------------------------------------------------CCCCCEEEccCCCCc
Confidence            99999998777776655                                                457889999999844


Q ss_pred             CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          720 GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       720 g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                      +.+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       150 ~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 TDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            4676 68999999999999999985 44 78999999999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=4.5e-18  Score=200.45  Aligned_cols=124  Identities=19%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             cCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCC
Q 038149          530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED  609 (844)
Q Consensus       530 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l  609 (844)
                      ..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..++.+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3455666677777777777776532223336666777777777776 66666677777777777777766 556666667


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149          610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN  656 (844)
Q Consensus       610 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  656 (844)
                      ++|++|+|++|.++ .+|..|+.+++|+.|+|++|+|++.+|..+..
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            77777777777665 56666666777777777777776666666544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=2.3e-17  Score=161.32  Aligned_cols=181  Identities=22%  Similarity=0.284  Sum_probs=111.6

Q ss_pred             CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149          589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE-PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY  667 (844)
Q Consensus       589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~  667 (844)
                      +.+++++|+++ .+|..+.  .+|++|++++|++++..+. .+..+++|++|+|++|+|++..|..|.+           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            45666666664 3444332  2666777777776655443 3667777777777777777666666654           


Q ss_pred             ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149          668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP  747 (844)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  747 (844)
                                                           +++|++|+|++|++++..|..|..+++|++|+|++|+|++.+|
T Consensus        77 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           77 -------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             -------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence                                                 3467777777777777777777888888888888888888888


Q ss_pred             cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccCCCCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNC  823 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~c  823 (844)
                      ..|+.+++|++|+|++|.+++..+...- ...++...+..+...+..|..  +....-.++..+...|..+....|
T Consensus       120 ~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c  192 (192)
T 1w8a_A          120 GSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred             HHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence            8888888888888888888876542110 011222233444444444443  222333345556666655433333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=4e-19  Score=202.89  Aligned_cols=177  Identities=19%  Similarity=0.173  Sum_probs=143.9

Q ss_pred             CCCCcEEECCCCccccccCccccCCCCCCEEECCCCc-------------CCcccchhhhCCCCCCEEE-ccCCc-----
Q 038149          561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE-------------FSGNIAHLINEDSNLRALL-LRGNN-----  621 (844)
Q Consensus       561 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~~~~l~~l~~L~~L~-L~~N~-----  621 (844)
                      .+.|+.|++++|+++ .+|..++++++|+.|++++|.             +.+.+|..++.+++|+.|+ ++.|.     
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            455666666666665 667777777777777776664             5566777777788888777 55553     


Q ss_pred             --------ccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149          622 --------LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA  693 (844)
Q Consensus       622 --------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (844)
                              ++.. |.     ..|+.|+|++|.|++ +|. ++.                                     
T Consensus       427 ~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~-------------------------------------  461 (567)
T 1dce_A          427 SKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQ-------------------------------------  461 (567)
T ss_dssp             HHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGG-------------------------------------
T ss_pred             hhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccc-------------------------------------
Confidence                    3322 11     258999999999986 565 654                                     


Q ss_pred             ccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccC-Cc
Q 038149          694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI-PP  772 (844)
Q Consensus       694 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~  772 (844)
                                 +++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.+ |.
T Consensus       462 -----------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          462 -----------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             -----------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred             -----------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH
Confidence                       568899999999999 899999999999999999999996 77 8999999999999999999887 99


Q ss_pred             cccCCCCCCEEEccCCcccccCCCC
Q 038149          773 ELGELSFLAIFNVSYNNLSGTVPNK  797 (844)
Q Consensus       773 ~l~~l~~L~~L~ls~N~l~g~ip~~  797 (844)
                      .+..+++|+.|++++|++++.+|..
T Consensus       528 ~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             HHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999999999999999988765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=4e-17  Score=168.14  Aligned_cols=169  Identities=19%  Similarity=0.184  Sum_probs=116.2

Q ss_pred             CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149          562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI  641 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  641 (844)
                      ..+..++++++.+++. + .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3444555556665533 2 45667777777777777763 34 56777777777777777775433  777777777777


Q ss_pred             CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149          642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD  721 (844)
Q Consensus       642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  721 (844)
                      ++|++++ +|...                                                  .++|++|+|++|++++ 
T Consensus        93 ~~N~l~~-l~~~~--------------------------------------------------~~~L~~L~L~~N~l~~-  120 (263)
T 1xeu_A           93 NRNRLKN-LNGIP--------------------------------------------------SACLSRLFLDNNELRD-  120 (263)
T ss_dssp             CSSCCSC-CTTCC--------------------------------------------------CSSCCEEECCSSCCSB-
T ss_pred             CCCccCC-cCccc--------------------------------------------------cCcccEEEccCCccCC-
Confidence            7777763 22110                                                  0356778888888874 


Q ss_pred             CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccccc
Q 038149          722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGT  793 (844)
Q Consensus       722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  793 (844)
                      +| .++.+++|++|+|++|++++. | .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       121 ~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          121 TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            33 477788888888888888753 3 577888888888888888765  5677788888888888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=7.4e-17  Score=166.13  Aligned_cols=170  Identities=24%  Similarity=0.305  Sum_probs=122.2

Q ss_pred             CCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEe
Q 038149          466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILD  545 (844)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~  545 (844)
                      +.++..+++++|.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            444555666666665332  3555666777777777666 344 56667777777777777765444  66777777777


Q ss_pred             cCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149          546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN  625 (844)
Q Consensus       546 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  625 (844)
                      +++|++.+..+.. . ++|+.|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.
T Consensus        92 L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           92 VNRNRLKNLNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSSCCSCCTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCccCCcCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            7777776533322 3 7788888888888753  3588889999999999999864 3 688889999999999999866


Q ss_pred             CCcccCCCCCCCEEEcCCCccccC
Q 038149          626 IPEPLCHLRKLAIVDISYNTLNGP  649 (844)
Q Consensus       626 ~p~~l~~l~~L~~L~Ls~N~l~~~  649 (844)
                        ..+..+++|+.|++++|++++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              6788899999999999998755

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.2e-17  Score=196.74  Aligned_cols=146  Identities=21%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             CCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccC
Q 038149          506 QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQ  584 (844)
Q Consensus       506 ~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~  584 (844)
                      ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+ .+++|+.|+|++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34555566666666666666655 44544556666666666666665 444433 5666777777777777 67888899


Q ss_pred             CCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCC-CCEEEcCCCccccCCCchhh
Q 038149          585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK-LAIVDISYNTLNGPIPSCFT  655 (844)
Q Consensus       585 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~  655 (844)
                      +++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+.. +..++|++|.++|.+|..+.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            999999999999997 67888999999999999999999888887755422 22467888888887777553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=6.1e-16  Score=147.74  Aligned_cols=88  Identities=22%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccc-cCcccccccCCCEEeCCCCcccccCC---ccccCCCCC
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTESMDLSYNKLNGQIP---PELGELSFL  780 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L  780 (844)
                      +++|++|+|++|++++.+|..+..+++|++|+|++|.+++. .+..++.+++|+.|++++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            44667777777777766677666777777777777777753 22667777778888888887775544   467777888


Q ss_pred             CEEEccCCcccc
Q 038149          781 AIFNVSYNNLSG  792 (844)
Q Consensus       781 ~~L~ls~N~l~g  792 (844)
                      ++|++++|.+..
T Consensus       150 ~~L~l~~n~~~~  161 (168)
T 2ell_A          150 TYLDGYDREDQE  161 (168)
T ss_dssp             CEETTEETTSCB
T ss_pred             cEecCCCCChhh
Confidence            888888877753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=8.3e-16  Score=146.82  Aligned_cols=139  Identities=24%  Similarity=0.199  Sum_probs=120.5

Q ss_pred             CCCCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149          584 QSSQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME  662 (844)
Q Consensus       584 ~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~  662 (844)
                      ..++|++|++++|+++ +.+|..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.+|..+.+      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            3478999999999998 78888889999999999999999865  78899999999999999999877777655      


Q ss_pred             cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC-CchhhhccccCeEeccCcc
Q 038149          663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI-PSEIGYLGEIHALNLSNNF  741 (844)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~  741 (844)
                                                                +++|++|+|++|++++.. +..++.+++|++|++++|.
T Consensus        94 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           94 ------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             ------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence                                                      467899999999999532 2789999999999999999


Q ss_pred             cccccC---cccccccCCCEEeCCCCcccccCCcc
Q 038149          742 LSGSIP---RSFSNLKMTESMDLSYNKLNGQIPPE  773 (844)
Q Consensus       742 l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~ip~~  773 (844)
                      +++..+   ..+..+++|+.||+++|.+. .+|.+
T Consensus       132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            996655   48899999999999999987 56654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=7.2e-16  Score=143.96  Aligned_cols=128  Identities=18%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             CCCCEEEccCCccc-ccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccccee
Q 038149          610 SNLRALLLRGNNLQ-GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE  688 (844)
Q Consensus       610 ~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (844)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+++                                
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------------   62 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------------------------------   62 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence            45666666666665 55666666666666666666666543  22222                                


Q ss_pred             eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccc-cCcccccccCCCEEeCCCCccc
Q 038149          689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTESMDLSYNKLN  767 (844)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~  767 (844)
                                      +++|++|+|++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|++|++++|+++
T Consensus        63 ----------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           63 ----------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ----------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ----------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                            44667777777777766777777777777777777777753 3466777777777777777777


Q ss_pred             ccCC---ccccCCCCCCEEEccC
Q 038149          768 GQIP---PELGELSFLAIFNVSY  787 (844)
Q Consensus       768 ~~ip---~~l~~l~~L~~L~ls~  787 (844)
                      +..+   ..+..+++|++||+++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             chHHHHHHHHHHCCCcccccCCC
Confidence            6555   4677777777777753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=149.22  Aligned_cols=90  Identities=26%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN  784 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  784 (844)
                      +++|++|||++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            34566777777777766666777777788888888888777777778888888888888888765555677788888888


Q ss_pred             ccCCcccccC
Q 038149          785 VSYNNLSGTV  794 (844)
Q Consensus       785 ls~N~l~g~i  794 (844)
                      +++|++.+..
T Consensus       133 L~~N~~~C~c  142 (193)
T 2wfh_A          133 IGANPLYCDC  142 (193)
T ss_dssp             CCSSCEECSG
T ss_pred             eCCCCeecCC
Confidence            8888877644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=8e-16  Score=164.42  Aligned_cols=100  Identities=18%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             CCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCC-EEECCCCcCCcccchhhhCCCCCCEEE
Q 038149          539 EVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLT-TLDLRDNEFSGNIAHLINEDSNLRALL  616 (844)
Q Consensus       539 ~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~  616 (844)
                      ++|+.+++++|.+....+..+ .+.+|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|.++++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            344444444444333333323 3444444444444 4434455667777777 777766 56655566777777777777


Q ss_pred             ccCCcccccCCcccCCCCCCCEEE
Q 038149          617 LRGNNLQGNIPEPLCHLRKLAIVD  640 (844)
Q Consensus       617 L~~N~l~~~~p~~l~~l~~L~~L~  640 (844)
                      +++|+++...+.+|.++++|+.++
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eCCCccCccchhhhcCCcchhhhc
Confidence            777777766666777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.1e-15  Score=142.65  Aligned_cols=128  Identities=22%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             CCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccC
Q 038149          586 SQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG  664 (844)
Q Consensus       586 ~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~  664 (844)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence            56777888888777 66777777788888888888888755  67788888888888888888777766654        


Q ss_pred             cccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC-CCchhhhccccCeEeccCcccc
Q 038149          665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD-IPSEIGYLGEIHALNLSNNFLS  743 (844)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~  743 (844)
                                                              +++|++|++++|++++. .|..++.+++|++|++++|.++
T Consensus        87 ----------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           87 ----------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ----------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                                                    45788899999998863 3478889999999999999998


Q ss_pred             cccC---cccccccCCCEEeCCC
Q 038149          744 GSIP---RSFSNLKMTESMDLSY  763 (844)
Q Consensus       744 ~~ip---~~l~~l~~L~~L~Ls~  763 (844)
                      +..+   ..++.+++|+.||+++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             chHHHHHHHHHHCCCcccccCCC
Confidence            7665   5788999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=5.1e-15  Score=142.61  Aligned_cols=91  Identities=21%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEc
Q 038149          706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV  785 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  785 (844)
                      ++|++|++++|++++..+..++.+++|++|+|++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            45666667767666555555677777777788877777666666777888888888888887655555677888888888


Q ss_pred             cCCcccccCCC
Q 038149          786 SYNNLSGTVPN  796 (844)
Q Consensus       786 s~N~l~g~ip~  796 (844)
                      ++|++.|.+|.
T Consensus       132 ~~N~~~~~~~~  142 (177)
T 2o6r_A          132 HTNPWDCSCPR  142 (177)
T ss_dssp             CSSCBCCCHHH
T ss_pred             cCCCeeccCcc
Confidence            88888876663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=2.6e-15  Score=160.46  Aligned_cols=258  Identities=12%  Similarity=0.011  Sum_probs=153.5

Q ss_pred             CCCccEEEccCCcCC--CCCCccccccccCcEEeccCCcCCCCCChhhhhc--------CCCCcEEeCcCcccCCcCCcc
Q 038149          393 LPELVYLDMSQNSFE--GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS--------CVSLEFMNLSHNYFDGQIFPK  462 (844)
Q Consensus       393 l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~  462 (844)
                      +++|++|||++|++.  .....   .++.++.+.+..|    .+|...|.+        |++|+.+++.+ .++.+...+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            556666666666665  11111   1122333444443    344445555        66777777766 666555566


Q ss_pred             ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcc----cCcCCChhhhcCCCCC-EEeCCCCccc-ccCCcccc
Q 038149          463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNM----LSGQLPRWIGKFSNLD-VLLMSRNSFE-GDVSVQLS  536 (844)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~----l~~~~p~~l~~l~~L~-~L~ls~n~l~-~~~~~~l~  536 (844)
                      |.+|++|+.+++.+|.+....+..|..+.++..+....+.    ....-...|.++..|+ .+.+....-. ......-.
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            6667777777777766665556666666666655554421    1222233455555555 3444322110 00000011


Q ss_pred             CCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCC-E
Q 038149          537 NLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLR-A  614 (844)
Q Consensus       537 ~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~  614 (844)
                      ...+++.+.+.++-......... .+++|+.+++++|+++...+.+|.+|++|+.+++.+| ++...+.+|.++++|+ .
T Consensus       200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            23445555555432111111111 3678888888888888666777888888888888887 7766677888888888 8


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccc
Q 038149          615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW  660 (844)
Q Consensus       615 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~  660 (844)
                      +++.+ +++..-+.+|.++++|+.++++.|+++..-+.+|.++..+
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            88888 6765667888888888888888888886666677776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=141.90  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=112.8

Q ss_pred             eeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc
Q 038149          690 KFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ  769 (844)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  769 (844)
                      ..++.+.+..++....+.+++|+|++|+++ .+|..+..+++|++|+|++|.|++..|..|.++++|++|+|++|+|++.
T Consensus        15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            344556666666666778999999999999 8899999999999999999999988888999999999999999999998


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149          770 IPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       770 ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      .|..|..+++|++|++++|++++..+.. ..+..+..+.+.|||..|++.
T Consensus        94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            8889999999999999999999765543 567788889999999999765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=1.6e-13  Score=150.35  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=40.3

Q ss_pred             ccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCC
Q 038149           87 IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGN  159 (844)
Q Consensus        87 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  159 (844)
                      .+...+|.++++|+.+++..+ ++.+..    .+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~  127 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM  127 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence            345566777777777777633 555444    45666777777777543 44445555666666666555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.7e-14  Score=138.87  Aligned_cols=133  Identities=22%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             CCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149          588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY  667 (844)
Q Consensus       588 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~  667 (844)
                      .+.+++++|+++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..           
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------   74 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-----------   74 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence            3556666666663 33322  256777777777777555556677777777777777777544444443           


Q ss_pred             ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149          668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP  747 (844)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  747 (844)
                                                           +++|++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus        75 -------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           75 -------------------------------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -------------------------------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence                                                 4567778888888886666667788888888888888886655


Q ss_pred             cccccccCCCEEeCCCCcccccCC
Q 038149          748 RSFSNLKMTESMDLSYNKLNGQIP  771 (844)
Q Consensus       748 ~~l~~l~~L~~L~Ls~N~l~~~ip  771 (844)
                      ..+..+++|+.|+|++|.+++..|
T Consensus       118 ~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          118 GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcCCcccCEEEecCCCeeccCc
Confidence            567788888888888888886554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=1.8e-16  Score=155.94  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=117.5

Q ss_pred             ccCCCCCCEEECCCCcCCcccch------hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhh
Q 038149          582 LLQSSQLTTLDLRDNEFSGNIAH------LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT  655 (844)
Q Consensus       582 l~~l~~L~~L~Ls~N~l~~~~~~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  655 (844)
                      +.....++.++++.+.+++.+|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44455666667777777666665      78888888888888888885 66 7888888888888888887 5565443


Q ss_pred             ccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeE
Q 038149          656 NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHAL  735 (844)
Q Consensus       656 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  735 (844)
                      .                                                +++|++|+|++|++++ +| .++.+++|++|
T Consensus        91 ~------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           91 V------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             H------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             c------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            3                                                3578888899988885 55 68888889999


Q ss_pred             eccCcccccccC-cccccccCCCEEeCCCCcccccCCcc----------ccCCCCCCEEEccCCccc
Q 038149          736 NLSNNFLSGSIP-RSFSNLKMTESMDLSYNKLNGQIPPE----------LGELSFLAIFNVSYNNLS  791 (844)
Q Consensus       736 ~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  791 (844)
                      ++++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|++||  +|.++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999998885332 46888888889999988888777653          77888888887  55554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=2.6e-13  Score=148.75  Aligned_cols=335  Identities=12%  Similarity=0.079  Sum_probs=181.6

Q ss_pred             CCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC
Q 038149          137 FNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL  216 (844)
Q Consensus       137 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  216 (844)
                      ++.+...+|.++++|+.+.+..+ ++.  +...+|.+|++|+.+++..+ ++ .+...+|.++.+|+.+.+..+ +....
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VRE--IGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCE--ECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccC--cchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeec
Confidence            44566677888888888888754 433  56677888888888888654 44 555667777888877766644 44445


Q ss_pred             cccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCC
Q 038149          217 PQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK  296 (844)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~  296 (844)
                      ..+|.++..++.......  . .+...+|.++++|+.+.+..+..  .++...+.++.+|+.+.+..+            
T Consensus       133 ~~aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~------------  195 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN------------  195 (394)
T ss_dssp             TTTTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT------------
T ss_pred             ceeeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC------------
Confidence            556666654333332222  2 33345677777777777765431  244445666666665544332            


Q ss_pred             CcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEc
Q 038149          297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI  376 (844)
Q Consensus       297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  376 (844)
                                  +......+|..+..|+.+.+..+...  +....+ ...                       +|+.+.+
T Consensus       196 ------------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~-~~~-----------------------~l~~i~i  237 (394)
T 4fs7_A          196 ------------LKIIRDYCFAECILLENMEFPNSLYY--LGDFAL-SKT-----------------------GVKNIII  237 (394)
T ss_dssp             ------------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTT-TTC-----------------------CCCEEEE
T ss_pred             ------------ceEeCchhhccccccceeecCCCceE--eehhhc-ccC-----------------------CCceEEE
Confidence                        22222334455555555554443221  111111 223                       3333333


Q ss_pred             cCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccC
Q 038149          377 SNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD  456 (844)
Q Consensus       377 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  456 (844)
                      ....  ..+....+..+..++.+.+..+... .....+..+..++.+....+.    ++...+..+.+|+.+.+..+ +.
T Consensus       238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~  309 (394)
T 4fs7_A          238 PDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VK  309 (394)
T ss_dssp             CTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CC
T ss_pred             CCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cc
Confidence            3221  1222233333555555555554332 334455556666665554432    23334556666666666543 44


Q ss_pred             CcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCcccc
Q 038149          457 GQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS  536 (844)
Q Consensus       457 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~  536 (844)
                      .+...+|.++.+|+.+++.++ ++.....+|.++++|+.+++..+ ++.+-..+|.+|.+|+.+++..+- . .+...|.
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~  385 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFE  385 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBC
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-Ehhheec
Confidence            444455666666666666543 44444556666777777777655 554455667777777777775542 2 2234566


Q ss_pred             CCCCCCEE
Q 038149          537 NLEVARIL  544 (844)
Q Consensus       537 ~l~~L~~L  544 (844)
                      ++++|+.+
T Consensus       386 ~c~~L~~I  393 (394)
T 4fs7_A          386 DTTKFKWI  393 (394)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCCcEE
Confidence            66666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.53  E-value=2.6e-13  Score=147.92  Aligned_cols=253  Identities=10%  Similarity=0.090  Sum_probs=116.6

Q ss_pred             CCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCC
Q 038149           84 GFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSE  163 (844)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  163 (844)
                      ++..+...+|.+. +|+.+++..+ +..+..    .+|.++ +|+.+.+.. .+..+...+|.++++|+.+++++|.++.
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~----~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~  194 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD----MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK  194 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECT----TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred             ccCEehHhhcccC-CccEEEeCCC-ccEECH----HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence            3334444455543 4555555443 443333    233332 355555543 4444444555555555555555555433


Q ss_pred             CCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChh
Q 038149          164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS  243 (844)
Q Consensus       164 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  243 (844)
                        ++...|. +.+|+.+.+..+ ++ .+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++ .++..
T Consensus       195 --I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~  265 (401)
T 4fdw_A          195 --LPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASR  265 (401)
T ss_dssp             --ECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTT
T ss_pred             --echhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChh
Confidence              3433443 355555555432 33 344445555555555555543 33334444444 455555552 3333 44444


Q ss_pred             hhcCCCCCCeEecCCCccc----CccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhc
Q 038149          244 VIANLTSLEYLSLFDNHFQ----ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQY  319 (844)
Q Consensus       244 ~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  319 (844)
                      +|.++++|+.+++.++.+.    ..++...|.++++|+.                       +.+. +.+......+|..
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~-----------------------l~l~-~~i~~I~~~aF~~  321 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR-----------------------FEIP-ESIRILGQGLLGG  321 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE-----------------------ECCC-TTCCEECTTTTTT
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe-----------------------EEeC-CceEEEhhhhhcC
Confidence            5555555555555544332    1133344444555544                       4444 2244444455555


Q ss_pred             CCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCccccccc-CCCCC-CCCCEEEccCCc
Q 038149          320 QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-LPNSK-RNLPHLVISNNS  380 (844)
Q Consensus       320 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~  380 (844)
                      +++|+.+++..+ ++ .+....+.++ +|+.+.+.+|....... .+..+ .+++.|.+..+.
T Consensus       322 c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            555555555433 32 2222223344 55555555554433211 11223 356667666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.9e-14  Score=137.07  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=41.2

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCc--ccccccCCCEEeCCCCcccccCCcc----ccCCCCC
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR--SFSNLKMTESMDLSYNKLNGQIPPE----LGELSFL  780 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~~----l~~l~~L  780 (844)
                      +|++|+|++|++++..|..++.+++|++|+|++|+++ .+|.  .++.+++|+.|++++|.++ .+|..    +..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            3444444444444322222345555555555555553 3343  4555555555555555555 33442    5555566


Q ss_pred             CEEEccCCccc
Q 038149          781 AIFNVSYNNLS  791 (844)
Q Consensus       781 ~~L~ls~N~l~  791 (844)
                      ++||+++|...
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            66666655544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=1.4e-12  Score=142.24  Aligned_cols=241  Identities=13%  Similarity=0.092  Sum_probs=134.1

Q ss_pred             CCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCC
Q 038149          492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHN  571 (844)
Q Consensus       492 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  571 (844)
                      +|+.+++..+ ++.+-..+|.++ +|+.+.+.+ .+....+.+|.+|++|+.+++++|.+.......+.+.+|+.+.+..
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence            3444444333 332333334442 344444443 3333334445555555555555555444333334445556666553


Q ss_pred             CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc---
Q 038149          572 NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG---  648 (844)
Q Consensus       572 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---  648 (844)
                      + ++.....+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++..-+.+|.++++|+.+++.+|.+..   
T Consensus       213 ~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          213 T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence            3 44455566777777777777764 44444555655 677777773 44554556677777777777777765531   


Q ss_pred             --CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149          649 --PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI  726 (844)
Q Consensus       649 --~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  726 (844)
                        .-+.+|.+                                                +++|+.++|. +.++..-...|
T Consensus       289 ~~I~~~aF~~------------------------------------------------c~~L~~l~l~-~~i~~I~~~aF  319 (401)
T 4fdw_A          289 AMIHPYCLEG------------------------------------------------CPKLARFEIP-ESIRILGQGLL  319 (401)
T ss_dssp             CEECTTTTTT------------------------------------------------CTTCCEECCC-TTCCEECTTTT
T ss_pred             cEECHHHhhC------------------------------------------------CccCCeEEeC-CceEEEhhhhh
Confidence              11112222                                                4456666666 34553444566


Q ss_pred             hhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEEccCCcc
Q 038149          727 GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFNVSYNNL  790 (844)
Q Consensus       727 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l  790 (844)
                      .++++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus       320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            77777777777544 555556667777 777777777777655555666663 566666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4.3e-14  Score=135.91  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccc
Q 038149          580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISL  659 (844)
Q Consensus       580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  659 (844)
                      ..+..+.+|++|++++|+++. +|......++|++|++++|++++.  ..+..+++|+.|++++|++++..|..+..   
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~---   86 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA---   86 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH---
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc---
Confidence            346778999999999999995 465444445999999999999975  68899999999999999998654454454   


Q ss_pred             ccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc--hhhhccccCeEec
Q 038149          660 WMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS--EIGYLGEIHALNL  737 (844)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~L  737 (844)
                                                                   +++|++|+|++|+++ .+|.  .++.+++|+.|++
T Consensus        87 ---------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           87 ---------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             ---------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred             ---------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence                                                         568899999999997 6776  8899999999999


Q ss_pred             cCcccccccCcc----cccccCCCEEeCCCCcccc
Q 038149          738 SNNFLSGSIPRS----FSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       738 s~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~  768 (844)
                      ++|.++ .+|..    ++.+++|+.||+++|.+..
T Consensus       121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999998 56764    8999999999999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=8.5e-16  Score=151.04  Aligned_cols=136  Identities=21%  Similarity=0.210  Sum_probs=114.7

Q ss_pred             cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149          578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI  657 (844)
Q Consensus       578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  657 (844)
                      +|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +| .+.. 
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~-  113 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK-  113 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH-
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc-
Confidence            44488999999999999999996 66 8889999999999999998 678888888999999999999985 34 3433 


Q ss_pred             ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC-chhhhccccCeEe
Q 038149          658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP-SEIGYLGEIHALN  736 (844)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~  736 (844)
                                                                     +++|++|++++|++++..+ ..+..+++|++|+
T Consensus       114 -----------------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A          114 -----------------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             -----------------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             -----------------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence                                                           5678999999999995322 4789999999999


Q ss_pred             ccCcccccccCcc----------cccccCCCEEeCCCCcccc
Q 038149          737 LSNNFLSGSIPRS----------FSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       737 Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~  768 (844)
                      +++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999999887764          88999999998  677663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.5e-13  Score=129.49  Aligned_cols=92  Identities=21%  Similarity=0.175  Sum_probs=84.3

Q ss_pred             ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEc
Q 038149          706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV  785 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  785 (844)
                      +.+++|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            46789999999999888999999999999999999999877778899999999999999999877778999999999999


Q ss_pred             cCCcccccCCCC
Q 038149          786 SYNNLSGTVPNK  797 (844)
Q Consensus       786 s~N~l~g~ip~~  797 (844)
                      ++|++++..+..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999877643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=8.5e-13  Score=125.75  Aligned_cols=108  Identities=21%  Similarity=0.281  Sum_probs=97.0

Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY  787 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  787 (844)
                      .+.+|+++|+++ .+|..+.  +.|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            468999999999 6887764  8999999999999998899999999999999999999987777889999999999999


Q ss_pred             CcccccCCC-CCcCCCcCccccCCCCCCcCcc
Q 038149          788 NNLSGTVPN-KGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       788 N~l~g~ip~-~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      |++++..|. -..+..+..+.+.+||..|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999987775 3677888899999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=1.7e-12  Score=124.07  Aligned_cols=107  Identities=19%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                      ...++++.+..++....+.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|||++|+|++
T Consensus        16 ~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~   95 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS   95 (174)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence            45566777777777777889999999999998888889999999999999999997666667889999999999999996


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCC
Q 038149          769 QIPPELGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       769 ~ip~~l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      ..+..+..+++|++|++++|++.+..+
T Consensus        96 l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           96 IPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             eCHHHhccccCCCEEEeCCCCcccccc
Confidence            666668889999999999999887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=1.7e-12  Score=124.13  Aligned_cols=107  Identities=20%  Similarity=0.259  Sum_probs=95.9

Q ss_pred             eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149          709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN  788 (844)
Q Consensus       709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  788 (844)
                      +.+++++|+++ .+|..+.  +.|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999997 8888775  89999999999999999999999999999999999999866667899999999999999


Q ss_pred             cccccCCC-CCcCCCcCccccCCCCCCcCcc
Q 038149          789 NLSGTVPN-KGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       789 ~l~g~ip~-~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      ++++..|. -..+..+..+.+.||+.-|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99976665 3667888899999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=1e-10  Score=128.01  Aligned_cols=334  Identities=10%  Similarity=0.120  Sum_probs=158.3

Q ss_pred             CCCchhhhcCCC-CCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCc---CCCCCcccccCCCCCCcEEEccCCcCC
Q 038149          138 NESLVPLLTSLT-SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR---ITGSLIMQGICDLKNLVELNINENEFD  213 (844)
Q Consensus       138 ~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~l~~l~~L~~L~L~~n~l~  213 (844)
                      +.+...+|.+++ .|+.+.+..+ ++.  +...+|.+|++|+.+.+..|.   ++ .+...+|.++.+|+.+.+..+ ++
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~--Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTE--IGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCE--ECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeE--EhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence            345556777774 5888888754 333  556677888888888777653   43 455566777777777766544 44


Q ss_pred             cCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCC
Q 038149          214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW  293 (844)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~  293 (844)
                      .+...+|..+.+|+.+.+..+ +. .++...|..+.+|+.+.+..+- . .+....+.. .                   
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~-------------------  182 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-T-------------------  182 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-C-------------------
T ss_pred             eehhhhhhhhcccccccccce-ee-eecccceeccccccccccccee-e-Eeccccccc-c-------------------
Confidence            445566677777777777543 22 4454566666667666665431 1 122222222 2                   


Q ss_pred             CCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCE
Q 038149          294 LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPH  373 (844)
Q Consensus       294 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~  373 (844)
                          .|+.+.+..+ +......+|..+..++........... ....++...........          .......+..
T Consensus       183 ----~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  246 (394)
T 4gt6_A          183 ----ALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALI----------RYPSQREDPA  246 (394)
T ss_dssp             ----CCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEE----------ECCTTCCCSE
T ss_pred             ----ceeEEEECCc-ccccccchhhhccccceeccccccccc-ccceeeccccccccccc----------ccccccccce
Confidence                3444444332 122333455555566655554433221 11111100000000000          0001111222


Q ss_pred             EEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCc
Q 038149          374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN  453 (844)
Q Consensus       374 L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  453 (844)
                      +.+..                          .++..-..+|.++..|+.+.+..+..  .+....|.++++|+.+.+. +
T Consensus       247 ~~ip~--------------------------~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~  297 (394)
T 4gt6_A          247 FKIPN--------------------------GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-S  297 (394)
T ss_dssp             EECCT--------------------------TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-T
T ss_pred             EEcCC--------------------------cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-C
Confidence            22211                          11111223444445555555543332  2334444555555555553 2


Q ss_pred             ccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCc
Q 038149          454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV  533 (844)
Q Consensus       454 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~  533 (844)
                      .+..+....|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+|++|+.+++.++....   .
T Consensus       298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~  372 (394)
T 4gt6_A          298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N  372 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H
T ss_pred             cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h
Confidence            333333445555555666555543 33344455666666666666443 443444566666666666666654321   2


Q ss_pred             cccCCCCCCEEecCCCc
Q 038149          534 QLSNLEVARILDISENK  550 (844)
Q Consensus       534 ~l~~l~~L~~L~ls~n~  550 (844)
                      .+..+.+|+.+.+..+.
T Consensus       373 ~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          373 AISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCBCCCCC---------
T ss_pred             hhhccCCCCEEEeCCCC
Confidence            34555666666655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=3e-10  Score=124.23  Aligned_cols=156  Identities=13%  Similarity=0.115  Sum_probs=117.9

Q ss_pred             cccCCCC-CCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCC---CCCCCcCcccccCCCCCCEEEccCCcCCCCCccc
Q 038149          119 NTSRSLK-QLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNS---FSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQ  194 (844)
Q Consensus       119 ~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  194 (844)
                      .+|.+++ .|+.+.+.. .++.+...+|.++++|+.+.+..+.   ++.  +...+|.++.+|+.+.+..+ ++ .+...
T Consensus        57 ~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~--Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~  131 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKK--IGRQAFMFCSELTDIPILDS-VT-EIDSE  131 (394)
T ss_dssp             TTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCE--ECTTTTTTCTTCCBCGGGTT-CS-EECTT
T ss_pred             hhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeE--echhhchhcccceeeccCCc-cc-eehhh
Confidence            5677775 599999975 4778888999999999999998764   433  56678999999999988765 43 56677


Q ss_pred             ccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCC
Q 038149          195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS  274 (844)
Q Consensus       195 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  274 (844)
                      .|..+.+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++ .+....|.. .+|+.+.+..+..  .+....+..+.
T Consensus       132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~  205 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECF  205 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCT
T ss_pred             hhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCccc--ccccchhhhcc
Confidence            8999999999999754 44466778999999999999765 44 566566654 6799998876532  23335577777


Q ss_pred             CCCEEEccCcc
Q 038149          275 RLEVFQLSRLQ  285 (844)
Q Consensus       275 ~L~~L~l~~~~  285 (844)
                      .++........
T Consensus       206 ~l~~~~~~~~~  216 (394)
T 4gt6_A          206 ALSTITSDSES  216 (394)
T ss_dssp             TCCEEEECCSS
T ss_pred             ccceecccccc
Confidence            77776655443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=3.3e-13  Score=145.66  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=37.3

Q ss_pred             ccceEEEeecCcccC----CCCchhhhccccCeEeccCcccccc----cCcccccccCCCEEeCCCCcccccCCccc
Q 038149          706 KYMTGLDLSSNELTG----DIPSEIGYLGEIHALNLSNNFLSGS----IPRSFSNLKMTESMDLSYNKLNGQIPPEL  774 (844)
Q Consensus       706 ~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  774 (844)
                      ++|++|||++|.+++    .++..+...+.|++|+|++|.|+..    ++..+...++|++|||++|.|+..-...+
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            345566666666553    1234445555666666666666542    33334445666666666666654443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=2.3e-11  Score=130.91  Aligned_cols=88  Identities=23%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             cccceEEEeec-CcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149          705 LKYMTGLDLSS-NELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF  783 (844)
Q Consensus       705 l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  783 (844)
                      +++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|++|++|+.|||++|+|++..|..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34466666664 666655555666666666666666666666666666666666666666666654444444444 6666


Q ss_pred             EccCCccccc
Q 038149          784 NVSYNNLSGT  793 (844)
Q Consensus       784 ~ls~N~l~g~  793 (844)
                      ++.+|++.+.
T Consensus       109 ~l~~N~~~c~  118 (347)
T 2ifg_A          109 VLSGNPLHCS  118 (347)
T ss_dssp             ECCSSCCCCC
T ss_pred             EeeCCCccCC
Confidence            6666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=2.4e-11  Score=130.78  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=93.0

Q ss_pred             EEEeecC-cccCCCCchhhhccccCeEeccC-cccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149          710 GLDLSSN-ELTGDIPSEIGYLGEIHALNLSN-NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY  787 (844)
Q Consensus       710 ~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  787 (844)
                      .++.+++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++..|..|..|++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4788888 888 6888 99999999999996 999988888999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149          788 NNLSGTVPNKGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       788 N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      |+|++..|.......+..+.+.+|+.-|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9999766654333347888899999988764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=2.8e-12  Score=138.39  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             CCccEEEccCCcCCCCCCcccccc-----ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccc-----
Q 038149          394 PELVYLDMSQNSFEGSIPPSMGYM-----ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY-----  463 (844)
Q Consensus       394 ~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----  463 (844)
                      +.|++|++++|.++......+...     ++|++|+|++|.++......+...+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            445555555555543222222211     4555555555555432222233333445555555555543222221     


Q ss_pred             cCCCCcCEecCCCCcCccc----ccccccCCCCCcEEEccCcccCcC----CChhhhcCCCCCEEeCCCCccc
Q 038149          464 MNLAKLVFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFE  528 (844)
Q Consensus       464 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~  528 (844)
                      ...+.|++|+|++|.++..    ++..+...++|++|++++|.+++.    ++..+...++|++|++++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            1234455555555555421    222233445555555555555431    1233344445555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.96  E-value=3.5e-08  Score=107.22  Aligned_cols=82  Identities=9%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS  250 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~  250 (844)
                      +....+|+.+.+... ++ .|...+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++ .++..+|... +
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence            445567777777643 33 555666777777777777643 555555666665 5666665433 33 4554455443 5


Q ss_pred             CCeEecCCC
Q 038149          251 LEYLSLFDN  259 (844)
Q Consensus       251 L~~L~L~~n  259 (844)
                      |+.+.+..+
T Consensus       115 L~~i~lp~~  123 (379)
T 4h09_A          115 LDDFEFPGA  123 (379)
T ss_dssp             CSEEECCTT
T ss_pred             cccccCCCc
Confidence            666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.91  E-value=1.1e-07  Score=103.17  Aligned_cols=128  Identities=10%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             hhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCccccc
Q 038149          142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLS  221 (844)
Q Consensus       142 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  221 (844)
                      .+++....+|+.+.+... +++  ++..+|.+|.+|+.++|..+ ++ .+...+|.++ +|+.+.+..+ +..+...+|.
T Consensus        39 ~~~~~~~~~i~~v~ip~~-vt~--Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~  111 (379)
T 4h09_A           39 IPWYKDRDRISEVRVNSG-ITS--IGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ  111 (379)
T ss_dssp             STTGGGGGGCSEEEECTT-EEE--ECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred             ccccccccCCEEEEeCCC-ccC--hHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceec
Confidence            355777788999998764 323  66788999999999999754 55 6777788887 6888887654 5545556676


Q ss_pred             CCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEcc
Q 038149          222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS  282 (844)
Q Consensus       222 ~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  282 (844)
                      .+ +|+.+.+..+- + .+....|.++ +|+...+..+- + .+....+..+..++...+.
T Consensus       112 ~~-~L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~  166 (379)
T 4h09_A          112 GT-DLDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVS  166 (379)
T ss_dssp             TC-CCSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-C-EECSCTTTTCTTCCEEEEC
T ss_pred             cC-CcccccCCCcc-c-cccccccccc-eeeeeecccee-e-ccccchhcccccccccccc
Confidence            54 79999987653 3 4443455554 46555554331 1 1222334555555554443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=3.9e-09  Score=112.70  Aligned_cols=64  Identities=14%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             cccceEEEeecCcccCCCCchhh---hccccCeEeccCcccccc----cCcccccccCCCEEeCCCCcccc
Q 038149          705 LKYMTGLDLSSNELTGDIPSEIG---YLGEIHALNLSNNFLSGS----IPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                      +++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            45566666666665543333332   345566666666665542    33333455566666666665553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=4.4e-09  Score=112.27  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=20.2

Q ss_pred             cccceEEEeecCcccCC----CCchhhhccccCeEeccCccccc
Q 038149          705 LKYMTGLDLSSNELTGD----IPSEIGYLGEIHALNLSNNFLSG  744 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~~  744 (844)
                      ++.|++|||+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            34555555555555542    23333445555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.62  E-value=2e-09  Score=108.71  Aligned_cols=83  Identities=25%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             cCCCCCCEEECCCCCCCCC-CcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-------
Q 038149          146 TSLTSLTSLFLQGNSFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-------  217 (844)
Q Consensus       146 ~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-------  217 (844)
                      .++++|++|+|++|.++.. .++ ..+..+++|++|+|++|++++.-....+..+ +|++|+|++|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            4456666666666666331 111 2344666677777777766632122223333 77777777777765444       


Q ss_pred             ccccCCCCCCEEE
Q 038149          218 QCLSNLTYLRVLD  230 (844)
Q Consensus       218 ~~l~~l~~L~~L~  230 (844)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2356677787776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=3.9e-08  Score=94.57  Aligned_cols=123  Identities=16%  Similarity=0.133  Sum_probs=58.4

Q ss_pred             ccCCCCCcEEeCCCC-CCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccc
Q 038149           93 FVPFQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGL  171 (844)
Q Consensus        93 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l  171 (844)
                      +...+.|++|+|++| .+.......+...+...++|++|+|++|.+.......++                      ..+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----------------------~~L   89 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----------------------EML   89 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----------------------HHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----------------------HHH
Confidence            344555666666665 554433222333444555555555555555432211111                      122


Q ss_pred             cCCCCCCEEEccCCcCCCCC---cccccCCCCCCcEEEc--cCCcCCcC----CcccccCCCCCCEEECcCCCCC
Q 038149          172 VNLRNLEVLDLSGNRITGSL---IMQGICDLKNLVELNI--NENEFDGL----LPQCLSNLTYLRVLDLSSNKLS  237 (844)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  237 (844)
                      ...+.|++|+|++|.+...-   ....+...+.|++|+|  ++|.+...    +...+...+.|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            33344555555555443110   1123444555666666  55655543    2233444566777777776653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=3.3e-07  Score=92.52  Aligned_cols=66  Identities=27%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             hccccCeEeccCccccc--ccCcccccccCCCEEeCCCCcccccCCccccCCC--CCCEEEccCCcccccCC
Q 038149          728 YLGEIHALNLSNNFLSG--SIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS--FLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       728 ~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~ip  795 (844)
                      +++.|++|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  .|+.|+|++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34555555555555554  3344445555555555555555543  2222222  55555555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=5e-07  Score=86.78  Aligned_cols=18  Identities=11%  Similarity=0.056  Sum_probs=9.5

Q ss_pred             cCCCCCCCEEEcCCCccc
Q 038149          630 LCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       630 l~~l~~L~~L~Ls~N~l~  647 (844)
                      +...+.|+.|+|++|.+.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            334455566666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=6.2e-06  Score=76.91  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=42.9

Q ss_pred             CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCC-CCCCchhhhcCC----CCCCEEECCCCC-CCCCCcCcccc
Q 038149           98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNS-FNESLVPLLTSL----TSLTSLFLQGNS-FSEGFKHNKGL  171 (844)
Q Consensus        98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l  171 (844)
                      .|++||++++.++...-    ..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. ++...+  ..+
T Consensus        62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L  135 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--IAL  135 (176)
T ss_dssp             CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHG
T ss_pred             eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHH
Confidence            46677777666544322    455666666666666663 555444555543    246666665553 432111  233


Q ss_pred             cCCCCCCEEEccCC
Q 038149          172 VNLRNLEVLDLSGN  185 (844)
Q Consensus       172 ~~l~~L~~L~Ls~n  185 (844)
                      .++++|++|+++++
T Consensus       136 ~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          136 HHFRNLKYLFLSDL  149 (176)
T ss_dssp             GGCTTCCEEEEESC
T ss_pred             hcCCCCCEEECCCC
Confidence            44555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.53  E-value=2.6e-05  Score=72.74  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=40.6

Q ss_pred             CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCc-CcccccccccCC----CCCcEEEccCcc-cCcCCChhhhcCCCC
Q 038149          444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ-FTGRLEVGLLNA----SSLYVLDVSNNM-LSGQLPRWIGKFSNL  517 (844)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~L  517 (844)
                      .|+.|+++++.++......+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666666666555444445555555555555553 443322223322    245555555552 443322334445555


Q ss_pred             CEEeCCCCc
Q 038149          518 DVLLMSRNS  526 (844)
Q Consensus       518 ~~L~ls~n~  526 (844)
                      +.|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00011  Score=69.93  Aligned_cols=67  Identities=15%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             CCCCCcEEeCCCC-CCCCCCccccccccCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEECCCCCC
Q 038149           95 PFQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNES----LVPLLTSLTSLTSLFLQGNSF  161 (844)
Q Consensus        95 ~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l  161 (844)
                      .-+.|++|+|+++ .|.......+..++..-+.|+.|+|++|.+.+.    +...+..-+.|++|+|+.|.|
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3455666666553 444332222334444555555555555555432    222233344444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.58  E-value=0.0017  Score=61.68  Aligned_cols=63  Identities=14%  Similarity=0.176  Sum_probs=27.6

Q ss_pred             CCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCC---cccc----cCCcccCCCCCCCEEEcCCCcc
Q 038149          584 QSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGN---NLQG----NIPEPLCHLRKLAIVDISYNTL  646 (844)
Q Consensus       584 ~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l  646 (844)
                      .-+.|++|+|++|.|...    +.+.+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            334445555555544421    1222333344555555433   2221    1223344445566666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.42  E-value=0.0042  Score=55.03  Aligned_cols=56  Identities=21%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             EEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149          710 GLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN  767 (844)
Q Consensus       710 ~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  767 (844)
                      .+|-+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777765 35554432  35667777777776544555666666666666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.35  E-value=0.004  Score=55.12  Aligned_cols=58  Identities=22%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             CeEeccCcccc-cccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149          733 HALNLSNNFLS-GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       733 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  792 (844)
                      ..++.+++.++ ..+|..+.  ++|+.|||++|+|+..-+..|..+++|++|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36888888886 46675543  468888888888886666677888888888888888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	844
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-14
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 3e-20
 Identities = 60/270 (22%), Positives = 95/270 (35%), Gaps = 5/270 (1%)

Query: 558 SSNHSSLRYLFPHNNSLSG--TIPNALLQSSQLTTLDLRDNE-FSGNIAHLINEDSNLRA 614
            +    +  L     +L     IP++L     L  L +       G I   I + + L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLA 674
           L +   N+ G IP+ L  ++ L  +D SYN L+G +P   +++   +      N  +S A
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGA 164

Query: 675 LPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHA 734
           +P      S     +                         S  +     S +    +   
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 735 LNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTV 794
                              K    +DL  N++ G +P  L +L FL   NVS+NNL G +
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 795 PNKGQFANFDESNYRGNPYLCGPAVRKNCS 824
           P  G    FD S Y  N  LCG  +   C+
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 5e-13
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 28/261 (10%)

Query: 219 CLSNLTYLRV--LDLSSNKLSGNLPL-SVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           C ++    RV  LDLS   L    P+ S +ANL  L +L +   +         +A  ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 276 LEVFQLSR-LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
           L    ++                 L  L+  +  +SGT+P  +    +   I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFI------------ 382
              P      +     M +  N LTG +    +  NL  + +S N               
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 383 ----------GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR 432
                              +   L  LD+  N   G++P  +  ++ L  L++S NN   
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 433 DLPKHFLTSCVSLEFMNLSHN 453
           ++P+    +    +    ++N
Sbjct: 283 EIPQ--GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 55/256 (21%), Positives = 90/256 (35%), Gaps = 2/256 (0%)

Query: 400 DMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLP-KHFLTSCVSLEFMNLSHNY-FDG 457
           D    ++ G +  +     R+  LDLS  N  +  P    L +   L F+ +       G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 458 QIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNL 517
            I P    L +L +L++     +G +   L    +L  LD S N LSG LP  I    NL
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 518 DVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT 577
             +    N   G +     +                     +  +        + ++   
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA 637
             + L  S + T                +    NL  L LR N + G +P+ L  L+ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 638 IVDISYNTLNGPIPSC 653
            +++S+N L G IP  
Sbjct: 272 SLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 66/378 (17%), Positives = 117/378 (30%), Gaps = 74/378 (19%)

Query: 11  CLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC--TWERIKCNATTGRVMEL 68
           C   ++  LL+IK  + +          L SW    T+DCC  TW  + C+  T      
Sbjct: 3   CNPQDKQALLQIKKDLGN-------PTTLSSW--LPTTDCCNRTWLGVLCDTDTQTY--- 50

Query: 69  SLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLK 128
                                         ++ LDLS                       
Sbjct: 51  -----------------------------RVNNLDLSGLNLPK----------------- 64

Query: 129 ILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRIT 188
                       +   L +L  L  L++ G   +        +  L  L  L ++   ++
Sbjct: 65  ---------PYPIPSSLANLPYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 189 GSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANL 248
           G++        K LV L+ + N   G LP  +S+L  L  +    N++SG +P S  +  
Sbjct: 115 GAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 249 TSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCN 308
                +++  N      P +    +  L    LSR  +E +        +         N
Sbjct: 174 KLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 309 ISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSK 368
                   +    +   +DL +N +  T P   L     L  + +  N L G +    + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 369 RNLPHLVISNNSFIGKLP 386
           +       +NN  +   P
Sbjct: 291 QRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 66/297 (22%), Positives = 100/297 (33%), Gaps = 31/297 (10%)

Query: 146 TSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL 205
           T    + +L L G +  + +     L NL  L  L + G       I   I  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 206 NINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF 265
            I      G +P  LS +  L  LD S N LSG LP   I++L +L  ++   N    + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAI 165

Query: 266 PLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRY 325
           P S                        +    +L        N             +  +
Sbjct: 166 PDS------------------------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           +DLS N L          +    +I    N+      ++  SK       + NN   G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD-LRNNRIYGTL 260

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
           P+     L  L  L++S N+  G I P  G ++R      ++N      P   L +C
Sbjct: 261 PQGLTQ-LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 52/283 (18%), Positives = 83/283 (29%), Gaps = 31/283 (10%)

Query: 298 QLKVLNLRHCNISG--TIPRFLQYQYDFRYIDLSDN-NLVDTFPTWLLQNNTKLEIMFLF 354
           ++  L+L   N+     IP  L       ++ +    NLV   P  + +      +    
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 355 NNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414
            N         +  + L  L  S N+  G LP +   + P LV +    N   G+IP S 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY 169

Query: 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474
           G   +L      S N  R   K   T                           K      
Sbjct: 170 GSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQ 534
                       +  + +L  LD+ NN + G LP+ + +   L                 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL----------------- 270

Query: 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYL-FPHNNSLSG 576
                    L++S N L G +    N        + +N  L G
Sbjct: 271 -------HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 1e-18
 Identities = 71/400 (17%), Positives = 130/400 (32%), Gaps = 36/400 (9%)

Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
            L       L    +T ++      DL  +  L  +      +    +  L  L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFP 292
           +N+L+   PL    NLT L  + + +N   +  PL+ L N + L +F      ++     
Sbjct: 75  NNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 293 WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF 352
                     N      + +    LQ       +               L N T LE + 
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQV----------TDLKPLANLTTLERLD 181

Query: 353 LFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPP 412
           + +N ++    L         L+ +NN      P         L  L ++ N  +     
Sbjct: 182 ISSNKVSDISVLAKLTNL-ESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IG 235

Query: 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472
           ++  +  L  LDL++N  S   P   L+    L  + L  N          +     + L
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS 532
             N  +    +     N  +L  L +  N +S   P  +   + L  L  + N      S
Sbjct: 293 NENQLEDISPIS----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS 346

Query: 533 VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNN 572
             L+NL     L    N++       +N + +  L  ++ 
Sbjct: 347 --LANLTNINWLSAGHNQISDLTPL-ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 3e-17
 Identities = 72/403 (17%), Positives = 140/403 (34%), Gaps = 39/403 (9%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +L +     +G  +  +      T L  +T+L         G K   G+  L NL  ++ 
Sbjct: 20  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINF 73

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL 242
           S N++T    +  + +L  LV++ +N N+   + P                N     L  
Sbjct: 74  SNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLT-----------NLTGLTLFN 119

Query: 243 SVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVL 302
           + I ++  L+ L+  +     S  +S ++  S L   Q      +  +   L        
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 303 NLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNL 362
                N    I    +       +  ++N + D  P       T L+ + L  N L    
Sbjct: 180 LDISSNKVSDISVLAKLTN-LESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIG 235

Query: 363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLF 422
            L +   NL  L ++NN      P +    L +L  L +  N      P     +  L  
Sbjct: 236 TLASLT-NLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP-----LAGLTA 286

Query: 423 LDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482
           L     N ++      +++  +L ++ L  N           +L KL  LF  +N+ +  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDV 344

Query: 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
             +   N +++  L   +N +S   P  +   + +  L ++  
Sbjct: 345 SSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 59/423 (13%), Positives = 122/423 (28%), Gaps = 59/423 (13%)

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
            L   ++  + +      + Q  ++L  +  L      +     +  +  L +L  ++  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFS 74

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
           +N   +  PL    N ++L    ++  Q+              +    +        + L
Sbjct: 75  NNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
                      + +++        LQ  +    +                  NL  L   
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL-----------ANLTTLERL 180

Query: 378 NNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKH 437
           + S       +    L  L  L  + N      P  +G +  L  L L+ N         
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----- 233

Query: 438 FLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497
                                      +L  L  L L +NQ +    +     + L  L 
Sbjct: 234 ----------------------IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELK 269

Query: 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557
           +  N +S   P          +  +  N  + +    +SNL+    L +  N +      
Sbjct: 270 LGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV 325

Query: 558 SSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLL 617
           S + + L+ LF  NN +S    ++L   + +  L    N+ S      +   + +  L L
Sbjct: 326 S-SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 618 RGN 620
              
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 5e-14
 Identities = 73/411 (17%), Positives = 133/411 (32%), Gaps = 63/411 (15%)

Query: 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
           L E +   + + +   ++  +   ++++  L          +    +    +L  +N S+
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSN 75

Query: 453 NYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW-- 510
           N           NL KLV + +N+NQ      +  L   +   L  +       L     
Sbjct: 76  NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 511 -------------IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557
                        I   S L  L       +      L+NL     LDIS NK+      
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SV 192

Query: 558 SSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLL 617
            +  ++L  L   NN +S   P  +   + L  L L  N+        +   +NL  L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 618 RGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPA 677
             N +    P  L  L KL  + +  N ++   P     ++         N         
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN--------- 295

Query: 678 EDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL 737
                               +      LK +T L L  N ++   P  +  L ++  L  
Sbjct: 296 -----------------QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 738 SNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788
           +NN +S     S +NL     +   +N+++   P  L  L+ +    ++  
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 7e-12
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 87  IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT 146
           + ++        L  LDL++N+               L +L  L +G N  +   +  L 
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLS------GLTKLTELKLGANQISN--ISPLA 282

Query: 147 SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206
            LT+LT+L L  N   +    +    NL+NL  L L  N I+       +  L  L  L 
Sbjct: 283 GLTALTNLELNENQLEDISPIS----NLKNLTYLTLYFNNISDIS---PVSSLTKLQRLF 335

Query: 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
              N+        L+NLT +  L    N++S   PL+   NLT +  L L D 
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 57/284 (20%), Positives = 93/284 (32%), Gaps = 37/284 (13%)

Query: 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
            +  +LDL  N+IT  +      +LKNL  L +  N+   + P   + L  L  L LS N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 235 KLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWL 294
           +L                             P  +      L V +    +V    F  L
Sbjct: 90  QLK--------------------------ELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 295 PKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLF 354
            +  +  L       SG      Q      YI ++D N+  T P  L  +   L  + L 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPS---LTELHLD 179

Query: 355 NNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414
            N +T          N    +  + + I  +        P L  L ++ N     +P  +
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238

Query: 415 GYMERLLFLDLSSNNFSR-----DLPKHFLTSCVSLEFMNLSHN 453
              + +  + L +NN S        P  + T   S   ++L  N
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 5/235 (2%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
                L   NN ++            L TL L +N+ S            L  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681
           L+    +    L++L    +  N +     S F  ++  +       + L  +       
Sbjct: 91  LKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAF 146

Query: 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNF 741
           +  +++    +A     +    +   +T L L  N++T    + +  L  +  L LS N 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 742 LSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796
           +S     S +N      + L+ NKL  ++P  L +  ++ +  +  NN+S    N
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 5e-13
 Identities = 60/282 (21%), Positives = 110/282 (39%), Gaps = 17/282 (6%)

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-LPNSKRNLPHLVISNNS 380
             R +  SD  L +  P  L  +     ++ L NN +T        + +NL  L++ NN 
Sbjct: 11  HLRVVQCSDLGL-EKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 381 FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440
                P  F   L +L  L +S+N  +  +P  M    + L +  +     R    + L 
Sbjct: 67  ISKISPGAFAP-LVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 441 SCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN 500
             + +E    +     G     +  + KL ++ + D   T  +  GL    SL  L +  
Sbjct: 125 QMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDG 180

Query: 501 NMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSN 560
           N ++      +   +NL  L +S NS     +  L+N    R L ++ NKL       ++
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 561 HSSLRYLFPHNNSLSG------TIPNALLQSSQLTTLDLRDN 596
           H  ++ ++ HNN++S         P    + +  + + L  N
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 50/301 (16%), Positives = 100/301 (33%), Gaps = 36/301 (11%)

Query: 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528
              L L +N+ T   +    N  +L+ L + NN +S   P        L+ L +S+N  +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQL 588
                    L+  R+ +    K+   +    N   +  L  +    SG    A     +L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648
           + + + D   +     L     +L  L L GN +       L  L  LA + +S+N+++ 
Sbjct: 153 SYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 649 PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708
                  N    + + +  N+ L        +                         KY+
Sbjct: 210 VDNGSLANTP-HLRELHLNNNKLVKVPGGLAD------------------------HKYI 244

Query: 709 TGLDLSSNELTG------DIPSEIGYLGEIHALNLSNNFLSGS--IPRSFSNLKMTESMD 760
             + L +N ++         P           ++L +N +      P +F  + +  ++ 
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

Query: 761 L 761
           L
Sbjct: 305 L 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 18/281 (6%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG 158
             +LDL +N+    ++       ++LK L  L +  N  ++        L  L  L+L  
Sbjct: 33  TALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 159 NSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQ 218
           N   E  +       L+ L V +    ++  S+      +   +VEL  N  +  G+   
Sbjct: 89  NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENG 144

Query: 219 CLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
               +  L  + ++   ++  +P        SL  L L  N   +    S+   ++  ++
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 279 FQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL----- 333
                     +N        L+ L+L +  +   +P  L      + + L +NN+     
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 334 VDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHL 374
            D  P            + LF+N +      P++ R +   
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 36/88 (40%)

Query: 703 DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS 762
           D+      LDL +N++T     +   L  +H L L NN +S   P +F+ L   E + LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 763 YNKLNGQIPPELGELSFLAIFNVSYNNL 790
            N+L          L  L +       +
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
              L  L L  N+    +         SLK L  L     SFN        SL +   L 
Sbjct: 170 PPSLTELHLDGNKITKVDAA-------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
               + ++  K   GL + + ++V+ L  N I+                  I  N+F   
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDF--C 263

Query: 216 LPQCLSNLTYLRVLDLSSNKLS-GNLPLSVIANLTSLEYLSL 256
            P   +       + L SN +    +  S    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (176), Expect = 6e-14
 Identities = 56/473 (11%), Positives = 121/473 (25%), Gaps = 37/473 (7%)

Query: 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG----LLPQCLSNLTYLRVLDL 231
           +++ LD+    ++ +   + +  L+    + +++          +   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENF 291
            SN+L       V+  L +                        +++   L    +     
Sbjct: 63  RSNELGDVGVHCVLQGLQT---------------------PSCKIQKLSLQNCCLTGAGC 101

Query: 292 PWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIM 351
             L      +  L+  ++S  +      Q     +      L      +   +    E +
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 352 FLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP 411
                             +   +  +    + +  ++    L  L        S      
Sbjct: 162 ASVLRA---KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 218

Query: 412 PSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVF 471
             +   +  L      +N   D+    L   +      L   +                 
Sbjct: 219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278

Query: 472 LFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDV 531
           L   ++     L    L      +L  +      QL     K  +      S  S     
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338

Query: 532 SVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT----IPNALLQSSQ 587
           +  L  L+++                    S LR L+  +  +S +    +   LL +  
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 588 LTTLDLRDNEFSGNIA-----HLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 635
           L  LDL +N             +      L  L+L        + + L  L K
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 66/460 (14%), Positives = 131/460 (28%), Gaps = 30/460 (6%)

Query: 98  ELHVLDLSDNRF--EGWEENKAYNTSRSLKQLKILNIGYNSFNE----SLVPLLTSLTSL 151
           ++  LD+         W E         L+Q +++ +      E     +   L    +L
Sbjct: 3   DIQSLDIQCEELSDARWAE-----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 152 TSLFLQGNSFS-EGFKH-NKGL-VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
             L L+ N     G     +GL      ++ L L    +TG+        L+ L  L   
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
               + L    L  L    +      +       S+ A         L      +   +S
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL 328
               +          L+        L      V +    ++ G +      +      + 
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 329 SDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPEN 388
             +  +      LL  +++L  ++++   +T        +       +   S  G    +
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 389 FGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM 448
            G  L     L+         +                 ++FS  L ++     + +   
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACC-------SHFSSVLAQNRFLLELQISNN 350

Query: 449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLS 504
            L                + L  L+L D   +      L   LL   SL  LD+SNN L 
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 505 GQLPRWIGKF-----SNLDVLLMSRNSFEGDVSVQLSNLE 539
                 + +        L+ L++    +  ++  +L  LE
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 52/463 (11%), Positives = 110/463 (23%), Gaps = 49/463 (10%)

Query: 150 SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG---SLIMQGICDLKNLVELN 206
            + SL +Q    S+  +  + L  L+  +V+ L    +T      I   +     L ELN
Sbjct: 3   DIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 207 INENEFDGLLPQCL-----SNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261
           +  NE   +   C+     +    ++ L L +  L+G     + + L +L  L       
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 262 QESFPLSVLAN-HSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ 320
                  +       L+                    +     LR       +       
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 321 YDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNS 380
            +     L             L+  +         +         + +          + 
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 381 FIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440
            + +L          L  L + +          +  + R        +    +L      
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 441 SCVSLEFMNLSHNYF-----------------DGQIFPKYMNLAKLVFLFLNDNQFTGRL 483
                                                 +++   ++    L D       
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 484 EVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLE 539
           +      S L VL +++  +S      L   +    +L  L +S N       +QL    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES- 420

Query: 540 VARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL 582
                                   L  L  ++   S  + + L
Sbjct: 421 -----------------VRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 8e-05
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 711 LDLSSNELTGDIPSEI-GYLGEIHALNLSNNFLSG----SIPRSFSNLKMTESMDLSYNK 765
           LD+   EL+    +E+   L +   + L +  L+      I  +         ++L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 766 LNGQIPPELGELSFLAIFNVSYNNLSG 792
           L       + +        +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 287 ETENFPWLPKFQLKVLNLRHCNISGT----IPRFLQYQYDFRYIDLSDNNLVDTFPTWLL 342
           E       P   L+VL L  C++S +    +   L   +  R +DLS+N L D     L+
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 343 ----QNNTKLEIMFLFNNFLTGNLQ--LPNSKRNLPHLVI 376
               Q    LE + L++ + +  ++  L   +++ P L +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 56/470 (11%), Positives = 127/470 (27%), Gaps = 37/470 (7%)

Query: 322 DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF 381
           D + +D+    L D     LL    + +++ L +  LT         +++   +  N   
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-----EARCKDISSALRVN--- 54

Query: 382 IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM-----ERLLFLDLSSNNFSRDLPK 436
                       P L  L++  N         +         ++  L L +   +     
Sbjct: 55  ------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 437 HFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL 496
              ++  +L  +    +  D  +    + L     L         +LE   L+A+S   L
Sbjct: 103 VLSSTLRTLPTLQ-ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLE 556
                         +      +  +        D   QL  L++      S+N       
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 557 FSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALL 616
            +S  S        N      +          ++       +   I      D       
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281

Query: 617 LRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALP 676
                        L       + +               + S      ++++S L+    
Sbjct: 282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341

Query: 677 AEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD----IPSEIGYLGEI 732
             + + S+ R+E   + +      +      +  L L+  +++      + + +     +
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPG--SVLRVLWLADCDVSDSSCSSLAATLLANHSL 399

Query: 733 HALNLSNNFLSGSIPRSFS-----NLKMTESMDLSYNKLNGQIPPELGEL 777
             L+LSNN L  +              + E + L     + ++   L  L
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 48/445 (10%), Positives = 98/445 (22%), Gaps = 21/445 (4%)

Query: 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDL 425
           ++  L I               +L +   + +            I  ++     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 426 SSNNFS----RDLPKHFLTSCVSLEFMNLS-HNYFDGQIFPKYMNLAKLVFLFLNDNQFT 480
            SN         + +   T    ++ ++L                L  L  L        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 481 GRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV 540
              + GL       +               +   S   +  + R   +       +N   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 541 ARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG 600
              + +    L                   +N        A   S +   L        G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 601 NIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW 660
                         L        G   +    L ++     S   L+          +  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 661 MEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG 720
           + +          +L  +    ++           +        +      D    EL  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 721 DIPSEIGYLGEIHALNLSNNFLSG----SIPRSFSNLKMTESMDLSYNKLNGQIPPELGE 776
            +      L     L L++  +S     S+  +         +DLS N L      +L E
Sbjct: 363 GLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 777 -----LSFLAIFNVSYNNLSGTVPN 796
                   L    +     S  + +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 219 CLSNLTYLRVLDLSSNKLSGNLPLSV---IANLTSLEYLSLFDNHFQESFPLSVLA---- 271
                + LRVL L+   +S +   S+   +    SL  L L +N   ++  L ++     
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 272 NHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLR 305
               LE   L  +    E    L   +    +LR
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 45/278 (16%), Positives = 86/278 (30%), Gaps = 13/278 (4%)

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISN---NSFI 382
                  L    P  +   + ++   FL  N ++       S R   +L I     N   
Sbjct: 16  TSCPQQGL-QAVPVGIPAASQRI---FLHGNRISH--VPAASFRACRNLTILWLHSNVLA 69

Query: 383 GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442
                 F  +                  P +   + RL  L L      ++L        
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGL 128

Query: 443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNM 502
            +L+++ L  N         + +L  L  LFL+ N+ +   E       SL  L +  N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 503 LSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS 562
           ++   P        L  L +  N+     +  L+ L   + L +++N            +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSG 600
            L+     ++ +  ++P  L   +      L  N+  G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 41/280 (14%), Positives = 79/280 (28%), Gaps = 9/280 (3%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550
                       L   +P  I   +    + +  N      +          IL +  N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 551 LYGPLEFSSNHSSLRYL--FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE 608
           L      +    +L        N  L    P       +L TL L           L   
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 609 DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYN 668
            + L+ L L+ N LQ    +    L  L  + +  N ++      F  +        + N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 669 STLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY 728
               +   A  +      + +     +   +     L+ +  L L+ N    D  +    
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPL 246

Query: 729 LGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
              +     S++ +  S+P+  +   +     L+ N L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 48/256 (18%), Positives = 76/256 (29%), Gaps = 7/256 (2%)

Query: 149 TSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208
            +   +FL GN  S            RNL +L L  N +                    +
Sbjct: 32  AASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
             +   + P     L  L  L L        L   +   L +L+YL L DN  Q      
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPD-D 147

Query: 269 VLANHSRLEVFQLSRLQVETENFPWLPKFQ-LKVLNLRHCNISGTIPRFLQYQYDFRYID 327
              +   L    L   ++ +           L  L L    ++   P   +       + 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 328 LSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPE 387
           L  NN +   PT  L     L+ + L +N    + +       L     S++     LP+
Sbjct: 208 LFANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 388 NF-GLILPELVYLDMS 402
              G  L  L   D+ 
Sbjct: 267 RLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 45/246 (18%), Positives = 70/246 (28%), Gaps = 8/246 (3%)

Query: 96  FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLF 155
                 + L  NR           + R+ + L IL +  N          T L  L  L 
Sbjct: 31  PAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
           L  N+             L  L  L L        L       L  L  L + +N    L
Sbjct: 87  LSDNAQL-RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
                 +L  L  L L  N++S  +P      L SL+ L L  N      P +       
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
           + ++  +            P   L+ L L              + +  +    S + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEVPC 262

Query: 336 TFPTWL 341
           + P  L
Sbjct: 263 SLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 2/208 (0%)

Query: 610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNS 669
           +  + + L GN +           R L I+ +  N L     + FT ++L  +     N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 670 TLSLALPAE-DNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY 728
            L    PA          + +               L  +  L L  N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 729 LGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788
           LG +  L L  N +S    R+F  L   + + L  N++    P    +L  L    +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 789 -NLSGTVPNKGQFANFDESNYRGNPYLC 815
              +                   NP++C
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC 239

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 5e-09
 Identities = 37/269 (13%), Positives = 86/269 (31%), Gaps = 14/269 (5%)

Query: 130 LNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG 189
           L++   + +  +   L S   + +     +   +    +     ++    +DLS + I  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQ---HMDLSNSVIEV 60

Query: 190 SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN-KLSGNLPLSVIANL 248
           S +   +     L  L++        +   L+  + L  L+LS     S     +++++ 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 249 TSLEYLSLFDNHFQESFPLSVLA-------NHSRLEVFQLSRLQVETENFPWLPKFQLKV 301
           + L+ L+L          + V             L  ++ +  + +           + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 302 LNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGN 361
                  +     +        +++ LS    +       L     L+ + +F     G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 362 LQLPNSKRNLPHLVISNNSFIGKLPENFG 390
           LQ    K  LPHL I+ + F        G
Sbjct: 241 LQ--LLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 17/277 (6%)

Query: 373 HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSR 432
            L ++  +    +     L+   ++     ++  +  +        R+  +DLS++    
Sbjct: 4   TLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 433 DLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF--------TGRLE 484
                 L+ C  L+ ++L        I       + LV L L+                 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 485 VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARIL 544
             L   +  +  D +   +   +       + L++    +N  + D+S  +        L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 545 DISENKLYGPLEFS--SNHSSLRYL-FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGN 601
           D+S++ +     F      + L++L       +       L +   L TL +      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 602 IAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAI 638
           +  L      L  L +  ++        + + +   I
Sbjct: 241 LQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 45/284 (15%), Positives = 85/284 (29%), Gaps = 19/284 (6%)

Query: 227 RVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286
           + LDL+   L  +    V   L S   ++          PL+   +  R++   LS   +
Sbjct: 3   QTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 287 ETENFPWLPK--FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPT----- 339
           E      +     +L+ L+L    +S  I   L    +   ++LS  +    F       
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 340 --WLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELV 397
               L               +   +   +      +L     +             P LV
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 398 YLDMSQN-SFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD 456
           +LD+S +   +         +  L  L LS            L    +L+ + +     D
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 457 GQIFPKYMNLAKLVFLFLNDNQFT--GRLEVGLLNASSLYVLDV 498
           G +      L  L    +N + FT   R  +G      ++ +  
Sbjct: 239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGIKC 279

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
             LDL+   L  D+   +   G + A     +F+   +   FS  ++ + MDLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEV 60

Query: 769 -QIPPELGELSFLAIFNVSYNNLSGTVPN 796
             +   L + S L   ++    LS  + N
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG 158
           +  +DLS++  E    +  +       +L+ L++     ++ +V  L   ++L  L L G
Sbjct: 48  VQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104

Query: 159 NSFSEGFKHNKGLVNLRNLEVLDLSGNRITG-----SLIMQGICDLKNLVELNINENEFD 213
            S    F     L +   L+ L+LS             +      +  L      +N   
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH 273
             L   +     L  LDLS + +  N        L  L++LSL   +      L  L   
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 274 SRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
             L+  Q+  + V       L +  L  L +   + +    
Sbjct: 225 PTLKTLQVFGI-VPDGTLQLLKE-ALPHLQINCSHFTTIAR 263

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 9/211 (4%)

Query: 196 ICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255
           +  + + +E+N ++     L P  L       +L LS N L     L+ +   T L  L+
Sbjct: 6   VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLN 61

Query: 256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPR 315
           L      +      L     L    LS  Q+++          L VL++    ++     
Sbjct: 62  LDRAELTKLQVDGTLPV---LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 316 FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV 375
            L+   + + + L  N L    P  L       ++    NN       L N   NL  L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 376 ISNNSFIGKLPENFGLILPELVYLDMSQNSF 406
           +  NS        FG     L +  +  N +
Sbjct: 179 LQENSLYTIPKGFFG--SHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 7/190 (3%)

Query: 385 LPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVS 444
           LP +   +  +   L +S+N        ++    RL  L+L     ++      L    +
Sbjct: 25  LPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
           L+  +                      L ++ N+ T      L     L  L +  N L 
Sbjct: 82  LDLSHNQLQSLPLLGQTLPAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 505 GQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSL 564
              P  +     L+ L ++ N+     +  L+ LE    L + EN LY   +       L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 565 RYLFPHNNSL 574
            + F H N  
Sbjct: 198 PFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 9/210 (4%)

Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
            + +   ++     +T   +   +   K+   L+++EN         L   T L  L+L 
Sbjct: 8   KVASHLEVNCDKRNLTA--LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFP 292
             +L+       +  L +L+                       +   +L+ L        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-----LG 118

Query: 293 WLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMF 352
            L             N   T+P  L             NN +   P  LL     L+ + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 353 LFNNFLTGNLQLPNSKRNLPHLVISNNSFI 382
           L  N L    +       LP   +  N ++
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 39/205 (19%), Positives = 58/205 (28%), Gaps = 9/205 (4%)

Query: 326 IDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKL 385
           ++    NL    P  L ++     I+ L  N L        +      L   N       
Sbjct: 15  VNCDKRNL-TALPPDLPKD---TTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELT 68

Query: 386 PENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL 445
                  LP L  LD+S N  +               +   S N    LP   L     L
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL--TVLDVSFNRLTSLPLGALRGLGEL 126

Query: 446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG 505
           + + L  N              KL  L L +N  T      L    +L  L +  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 506 QLPRWIGKFSNLDVLLMSRNSFEGD 530
            +P+       L    +  N +  +
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 4/179 (2%)

Query: 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN 621
                L    N L       L+  ++LT L+L   E +                    +N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD---LSHN 87

Query: 622 LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681
              ++P     L  L ++D+S+N L          +    E     N   +L        
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNN 740
              +++ +         +   + L+ +  L L  N L   IP        +    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNS 669
            +   L L  N L       L    +L  +++    L          +   ++  +    
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 670 TLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL 729
           +L           +   ++V F             L  +  L L  NEL    P  +   
Sbjct: 91  SLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 730 GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN 789
            ++  L+L+NN L+       + L+  +++ L  N L   IP        L    +    
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH--- 203

Query: 790 LSGTVPNKGQFANFDESNYRGNPYLC 815
                               GNP+LC
Sbjct: 204 --------------------GNPWLC 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 20/228 (8%)

Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
           L N +++   ++     + Q  ++L  +  L      ++    +  +  L +L  L L D
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKD 72

Query: 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQ 318
           N   +  PL  L   + LE+       V         K                    LQ
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 319 YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISN 378
             Y       + + L        L                        +   L  L   +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL----------ANLSKLTTLKADD 182

Query: 379 NSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLS 426
           N      P      LP L+ + +  N      P  +     L  + L+
Sbjct: 183 NKISDISPLAS---LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 191 LIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS 250
             +  + +L  L  L  ++N+   + P  L++L  L  + L +N++S   PL+   N ++
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSN 218

Query: 251 LEYLSL 256
           L  ++L
Sbjct: 219 LFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 25/232 (10%), Positives = 61/232 (26%), Gaps = 23/232 (9%)

Query: 222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
            L     +    + ++  +  + +  +T+   LS F         +  L N   LE+   
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITT---LSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 282 SRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL-VDTFPTW 340
               +                N      +    + ++              L   +    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 341 LLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLD 400
           L  +  ++  +               + +      ++N                +L  L 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL--------------SKLTTLK 179

Query: 401 MSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452
              N      P  +  +  L+ + L +N  S   P   L +  +L  + L++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 22/220 (10%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +L     +  G ++  +++      L  +T+L   G     G    +G+  L NL  L+L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL-----------SNLTYLRVLDL 231
             N+IT    ++ +  +  L            +                +++T L  L  
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET-EN 290
                     ++ I+ L  L  L        +   L+ LAN S+L   +    ++     
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 291 FPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330
              LP   L  ++L++  IS   P  L    +   + L++
Sbjct: 191 LASLPN--LIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 18/208 (8%)

Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
             +L  +  L   G  +T    ++G+  L NL+ L + +N+        L+ L  L  + 
Sbjct: 37  QADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQI-----TDLAPLKNLTKIT 88

Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETEN 290
                 +    +S IA L S++ L L      +  PL+ L+N   L +       +    
Sbjct: 89  ELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLA 148

Query: 291 FPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEI 350
                ++          N   +    L        +   DN + D  P   L +   L  
Sbjct: 149 GLTNLQYL------SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIE 199

Query: 351 MFLFNNFLTGNLQLPNSKRNLPHLVISN 378
           + L NN ++    L N+  NL  + ++N
Sbjct: 200 VHLKNNQISDVSPLANTS-NLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRI 187
           ++L++ +     +++  L  L  +T L L  N              L  L  L++     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP------ALAALRCLEVLQASD 52

Query: 188 TGSLIMQGICDLKNLVELNINENEFDGL-LPQCLSNLTYLRVLDLSSNKLSG--NLPLSV 244
                + G+ +L  L EL +  N        Q L +   L +L+L  N L     +   +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 245 IANLTSLEYL 254
              L S+  +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
            L  L  +  LDLS NR+    +   +  L+ L  L  ++N  + +      NL  L+ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVA--NLPRLQEL 70

Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
            L +N+L  +  +  + +   L  L+L  N   +
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 31/149 (20%)

Query: 227 RVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286
           RVL L+   L+    L  +  L  + +L L  N                       RL+ 
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTHLDLSHN-----------------------RLRA 34

Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
                  L    L+VL      +              + + L +N L  +     L +  
Sbjct: 35  LPPALAAL--RCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCP 90

Query: 347 KLEIMFLFNNFLTGNLQLPNS-KRNLPHL 374
           +L ++ L  N L     +       LP +
Sbjct: 91  RLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
           VL L+   +T   ++  +  L  +  L+++ N            L  LR L++     + 
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNA 54

Query: 239 NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS 282
              +  +ANL  L+ L L +N  Q+S  +  L +  RL +  L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 398 YLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457
            L ++      ++   +  +  +  LDLS N      P   L +   LE +  S N    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNAL-- 55

Query: 458 QIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL-NASSLYVLDVSNNMLSGQ---LPRWIGK 513
           +      NL +L  L L +N+      +  L +   L +L++  N L  +     R    
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 514 FSNLDVLL 521
             ++  +L
Sbjct: 116 LPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 495 VLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP 554
           VL +++  L+      + +   +  L +S N         L+ L    +L  S+N L   
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS---GNIAHLINEDSN 611
              ++       L  +N          L+   +L  L+L+ N      G    L     +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 612 LRALL 616
           + ++L
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIG 383
           R + L+  +L        L+    +  + L +N L      P +   L  L +   S   
Sbjct: 1   RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL---PPALAALRCLEVLQASDNA 54

Query: 384 KLPENFGLILPELVYLDMSQNSFEG-SIPPSMGYMERLLFLDLSSNNFSRD 433
               +    LP L  L +  N  +  +    +    RL+ L+L  N+  ++
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 24/104 (23%)

Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP---------------------RS 749
           L L+  +LT  +   +  L  +  L+LS+N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 750 FSNLKMTESMDLSYNKLNG-QIPPELGELSFLAIFNVSYNNLSG 792
            +NL   + + L  N+L        L     L + N+  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 24/188 (12%)

Query: 220 LSNLTYLRVLDLSSNKLSGNLPL-----SVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274
                 +   +    +L G +P      + ++ L + ++L+L  N+ ++   +S L+   
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---ISSLSGME 70

Query: 275 RLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
            L +  L   +   +    L      +  L            ++   + R + +S+N + 
Sbjct: 71  NLRILSLG--RNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128

Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILP 394
           +      L    KLE + L  N L  + +  N+       V+                LP
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR--------------LP 174

Query: 395 ELVYLDMS 402
            L  LD  
Sbjct: 175 NLKKLDGM 182

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 18/205 (8%)

Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
                ++ N+ +      + Q  + L  +  +  +++ +     +     L ++  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLN 76

Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317
            N   +  PL      + L+      L           K   K+ +L   +   +    L
Sbjct: 77  GNKLTDIKPL------ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVIS 377
            +      + L +N + D      L     L +     + +     L      L +L +S
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT----KLQNLYLS 186

Query: 378 NNSFIGKLPENFGLILPELVYLDMS 402
            N  I  L    G  L  L  L++ 
Sbjct: 187 KNH-ISDLRALAG--LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
           +  +    N+   S  +        L S+  +    +      K  +G+  L N+  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 183 SGNRITG 189
           +GN++T 
Sbjct: 76  NGNKLTD 82

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 17/318 (5%)

Query: 125 KQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFS-EGFKH-NKGLVNLRNLEVLDL 182
           K LK+  I      +S+  +L    S+  + L GN+   E  +  ++ + + ++LE+ + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 183 SGNRIT--GSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
           S          I + +  L   +      +                 +  LS +    +L
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 241 PLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLK 300
            L         +  +      QE        N   L      R ++E  +     K    
Sbjct: 127 YLHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 301 VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG 360
              L    +     R    ++           L           +     + +       
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--- 241

Query: 361 NLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM-----G 415
                  +  L   ++S       +     L    L  L +  N  E     ++      
Sbjct: 242 --WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 416 YMERLLFLDLSSNNFSRD 433
            M  LLFL+L+ N FS +
Sbjct: 300 KMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 42/295 (14%), Positives = 77/295 (26%), Gaps = 11/295 (3%)

Query: 169 KGLVNLRNLEVLDLSGNRITG---SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTY 225
             L+   +++ + LSGN I       + + I   K+L     ++     +  +    L  
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84

Query: 226 LRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ 285
           L    L   KL            T+ E L  F +       L +  N    +        
Sbjct: 85  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 144

Query: 286 VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNN 345
           ++        K    + ++             ++   F+   L     +           
Sbjct: 145 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 204

Query: 346 TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNS 405
             L     +   L       N+  +L    ++            GL    L     ++ +
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL----SARGA 260

Query: 406 FEGSIPPSMGYMERLLFLDLSSNNFSRD----LPKHFLTSCVSLEFMNLSHNYFD 456
                  S      L  L L  N    D    L          L F+ L+ N F 
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 46/353 (13%), Positives = 86/353 (24%), Gaps = 40/353 (11%)

Query: 205 LNINENEFDGL--LPQCLSNLTYLRVLDLSSNKLSGNLPL---SVIANLTSLEYLSLFDN 259
           L ++    +    +   L     ++ + LS N +           IA+   LE     D 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 260 HFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQY 319
                                L  L       P L   +L             +  FL  
Sbjct: 70  FTG---------RVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSK 119

Query: 320 QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN 379
                ++ L +N L       + +   +L +     N              L  ++   N
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-----------PLRSIICGRN 168

Query: 380 SFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFL 439
                  + +         L   +    G  P  + ++                    F 
Sbjct: 169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 228

Query: 440 TSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVS 499
               S   + L       ++      L+      + D           L    L  L + 
Sbjct: 229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA-------FSKLENIGLQTLRLQ 281

Query: 500 NNMLSGQLPRWI-----GKFSNLDVLLMSRNSF--EGDVSVQLSNLEVARILD 545
            N +     R +      K  +L  L ++ N F  E DV  ++  +   R   
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 8e-06
 Identities = 54/346 (15%), Positives = 104/346 (30%), Gaps = 33/346 (9%)

Query: 175 RNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
           R    L+L+   ++       + +   +L  L  + N     LP+   +L  L V + + 
Sbjct: 38  RQAHELELNNLGLS------SLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNN- 89

Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293
                   L  +++L  L       N+  E  P    ++  ++     + L+   +  P 
Sbjct: 90  --------LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 294 LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL 353
           L         L        +P       D   +    +  +         N  +      
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPS 413
              FLT      N  + LP L  S  +   +               ++ Q+     +  +
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-------LPELPQSLTFLDVSEN 254

Query: 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473
           +      L  +L   N S +  +       SLE +N+S+N       P      +L  L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPA--LPPRLERLI 310

Query: 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDV 519
            + N     +        +L  L V  N L  + P       +L +
Sbjct: 311 ASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
              +  L++S+N+L  ++P+    L     L  S N L+  +P    NLK    + + YN
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYN 334

Query: 765 KLNGQIPPELGELSFL 780
            L  + P     +  L
Sbjct: 335 PLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 57/314 (18%), Positives = 95/314 (30%), Gaps = 25/314 (7%)

Query: 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARI------- 543
              + L+++N  LS  LP       +L+ L+ S NS   ++     +L+   +       
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 544 LDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603
           L      L      ++    L  L   +      + N  L+        L       N  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663
             + E  NL  L     +       P   L   +IV  +      P       ++     
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 664 GNYYNST-----LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNEL 718
            N   +         AL   DN  +      + +            L  +       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 719 TGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778
           + +I S       +  LN+SNN L   +P     L   E +  S+N L  ++P     L 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLK 327

Query: 779 FLAIFNVSYNNLSG 792
            L   +V YN L  
Sbjct: 328 QL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 56/350 (16%), Positives = 91/350 (26%), Gaps = 31/350 (8%)

Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
           L  CL        L+L++  LS     S+      LE L    N   E     +      
Sbjct: 32  LRDCLDR--QAHELELNNLGLS-----SLPELPPHLESLVASCNSLTE-----LPELPQS 79

Query: 276 LEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335
           L+   +            L      +  L   N        LQ     + ID+ +N+L  
Sbjct: 80  LKSLLVDNNN-----LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPE 395
                            L       NL    +     + +         L          
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
               ++    F  +I      ++ L  L  S    +           +      L  +  
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
                 +              N  +  +        SL  L+VSNN L  +LP       
Sbjct: 255 IFSGLSELP------PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP--- 304

Query: 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLR 565
            L+ L+ S N    +V     NL+    L +  N L    +   +   LR
Sbjct: 305 RLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 12/91 (13%)

Query: 112 WEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGL 171
              N+  +       L+ LN+  N   E    L      L  L    N  +E  +     
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLAEVPEL---- 322

Query: 172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNL 202
              +NL+ L +  N +           +++L
Sbjct: 323 --PQNLKQLHVEYNPLRE--FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 51/339 (15%), Positives = 85/339 (25%), Gaps = 28/339 (8%)

Query: 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357
           Q   L L +  +S ++P           +  S N+L     T L +    L+ + + NN 
Sbjct: 39  QAHELELNNLGLS-SLPELPP---HLESLVASCNSL-----TELPELPQSLKSLLVDNNN 89

Query: 358 LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM 417
           L     LP      P L     S               L  +D+  NS +          
Sbjct: 90  LKALSDLP------PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN 477
                 +                       +    +           N        L + 
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSN 537
            F   +        +L  L  S   L+ +             L     S      +    
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 538 LEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597
             +  +   S               SL  L   NN L   +P       +L  L    N 
Sbjct: 264 PNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFN- 314

Query: 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKL 636
              ++A +     NL+ L +  N L+   P+    +  L
Sbjct: 315 ---HLAEVPELPQNLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 51/331 (15%), Positives = 84/331 (25%), Gaps = 30/331 (9%)

Query: 99  LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQG 158
            H L+L++       E            L+ L    NS  E    L     SL SL +  
Sbjct: 40  AHELELNNLGLSSLPE--------LPPHLESLVASCNSLTE----LPELPQSLKSLLVDN 87

Query: 159 NSFSEGFKHNKGL-VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP 217
           N+          L     +   L+        S +     D  +L +L       + +  
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 218 QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLE 277
                     + +L           S+         L            L  L N   L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 278 VFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337
                   ++T          L V +    ++                         + +
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 338 PTWLLQNN--------TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENF 389
                 N           LE + + NN L    +LP     L  L+ S N  + ++PE  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI---ELPALPPRLERLIASFNH-LAEVPE-- 321

Query: 390 GLILPELVYLDMSQNSFEGSIPPSMGYMERL 420
             +   L  L +  N      P     +E L
Sbjct: 322 --LPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYNKLN 767
           +GL  + +    D    +     +  L + N      +       L    ++ +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 768 GQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVR 820
              P        L+  N+S+N L        Q  +  E    GNP  C  A+R
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 1/143 (0%)

Query: 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYF 455
              L  +++         +   E L  L + +    + L    L     L  + +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 456 DGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFS 515
                  +    +L  L L+ N         +   S   ++   N +      RW+ ++ 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 516 NLDVLLMSRNSFEGDVSVQLSNL 538
              +  +     +      L+++
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHM 151

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 22/189 (11%), Positives = 49/189 (25%), Gaps = 19/189 (10%)

Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258
           L   ++  + +      + Q  ++L  +  L      +     +  +  L +L  ++  +
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 71

Query: 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQ 318
           N   +  PL  L     + +       +                N             L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 319 YQYDFRYIDLSDNNLVDTFPTWL-------------LQNNTKLEIMFLFNNFLTGNLQLP 365
                       + L                     L N T LE + + +N ++  + + 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-ISVL 190

Query: 366 NSKRNLPHL 374
               NL  L
Sbjct: 191 AKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 193 MQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE 252
                  +       + N  + L        +   +LD+S  ++  +LP   + NL  L 
Sbjct: 170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 228

Query: 253 YLSLF 257
             S +
Sbjct: 229 ARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 189 GSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235
             L           V L+I+      L    L NL  LR     + K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 104 LSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSE 163
           L++ + E  E+ K   + R     + L++     +    P L +      L  + +  + 
Sbjct: 1   LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA- 55

Query: 164 GFKHNKGLVNLRNLEVLDLSGNRITG-SLIMQGICDLKNLVELNINENEFDGLLPQCLSN 222
                    N+  L  L+LS NR+     +   +    NL  LN++ NE           
Sbjct: 56  --TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 113

Query: 223 LTYLRVLDLSSNKLSGNLP------LSVIANLTSLEYL 254
              L  L L  N LS           ++      L  L
Sbjct: 114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	844
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.8e-37  Score=326.96  Aligned_cols=295  Identities=25%  Similarity=0.386  Sum_probs=171.6

Q ss_pred             CCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCC--CCceEecCCC--CceEEEeeCcCcccCCCCCCCCC
Q 038149           10 SCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCT--WERIKCNATT--GRVMELSLDSAIQVDSDDVNDGF   85 (844)
Q Consensus        10 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gv~c~~~~--~~V~~l~L~~~~~~~~~~~~~~~   85 (844)
                      -|+++||+||++||+++.+    |   ..+++|..  ++|||.  |.||+|+..+  +||++|+|+++.+  .|..    
T Consensus         2 ~c~~~e~~aLl~~k~~~~~----~---~~l~sW~~--~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l--~g~~----   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGN----P---TTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--PKPY----   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC----C---GGGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--SSCE----
T ss_pred             CCCHHHHHHHHHHHHHCCC----C---CcCCCCCC--CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC--CCCC----
Confidence            4999999999999999964    3   46899975  479994  9999998643  4899999998876  3321    


Q ss_pred             cccCCCCccCCCCCcEEeCCC-CCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCC
Q 038149           86 PIINMSLFVPFQELHVLDLSD-NRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEG  164 (844)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  164 (844)
                       .+ ++.+.++++|++|+|++ |.+.|..|    ..++++++|++|+|++|++.+..+..+.                  
T Consensus        67 -~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~------------------  122 (313)
T d1ogqa_          67 -PI-PSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLS------------------  122 (313)
T ss_dssp             -EC-CGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGG------------------
T ss_pred             -CC-ChHHhcCccccccccccccccccccc----cccccccccchhhhcccccccccccccc------------------
Confidence             01 22344455555555543 44444333    3344444444444444444444444444                  


Q ss_pred             CcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCC-CEEECcCCCCCCCCChh
Q 038149          165 FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYL-RVLDLSSNKLSGNLPLS  243 (844)
Q Consensus       165 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~p~~  243 (844)
                              .+.+|+++++++|.+.+.++ ..+.++++|+++++++|.+.+.+|..+..+..+ +.+++++|++++..| .
T Consensus       123 --------~~~~L~~l~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~-~  192 (313)
T d1ogqa_         123 --------QIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-P  192 (313)
T ss_dssp             --------GCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-G
T ss_pred             --------chhhhcccccccccccccCc-hhhccCcccceeecccccccccccccccccccccccccccccccccccc-c
Confidence                    44455555555544443333 234455555555555555554455544444443 445555555544444 3


Q ss_pred             hhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCC
Q 038149          244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF  323 (844)
Q Consensus       244 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  323 (844)
                      .+..+..+ ++++..+...+.+| ..+..+++++.+++.++.+......+....+|+.|++++|+++|.+|.+++++++|
T Consensus       193 ~~~~l~~~-~l~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L  270 (313)
T d1ogqa_         193 TFANLNLA-FVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             GGGGCCCS-EEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             cccccccc-cccccccccccccc-ccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCC
Confidence            44433322 45555554444443 23444444444444444443332233334467777788888888888888888888


Q ss_pred             CEEEccCCcccccCchhHhhcCCCCcEEEcCCCc
Q 038149          324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF  357 (844)
Q Consensus       324 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~  357 (844)
                      ++|+|++|+++|.+|..  .++++|+.+++.+|+
T Consensus       271 ~~L~Ls~N~l~g~iP~~--~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         271 HSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             CEEECcCCcccccCCCc--ccCCCCCHHHhCCCc
Confidence            88888888888888753  255566665555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.4e-33  Score=293.77  Aligned_cols=260  Identities=32%  Similarity=0.516  Sum_probs=222.4

Q ss_pred             CCCcEEEccCcccCc--CCChhhhcCCCCCEEeCCC-CcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEE
Q 038149          491 SSLYVLDVSNNMLSG--QLPRWIGKFSNLDVLLMSR-NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYL  567 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  567 (844)
                      ..++.|++++|.++|  .+|..++++++|++|++++ |.++|.+|..+.++++|++|++++|++.               
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~---------------  114 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---------------  114 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc---------------
Confidence            468888888888887  4778888888888888876 6788788887877777777777766654               


Q ss_pred             ECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCC-CEEEcCCCcc
Q 038149          568 FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKL-AIVDISYNTL  646 (844)
Q Consensus       568 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l  646 (844)
                              +..+..+..+..|+.+++++|.+.+.+|..++.++.|+++++++|.+.|.+|..+..+..+ +.+++++|++
T Consensus       115 --------~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         115 --------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             --------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             --------ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                    4556667777888888888888888888888888888888888888888888888888776 7899999999


Q ss_pred             ccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149          647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI  726 (844)
Q Consensus       647 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  726 (844)
                      +|..|..+.++                                                 ....++++++.+.|.+|..+
T Consensus       187 ~~~~~~~~~~l-------------------------------------------------~~~~l~l~~~~~~~~~~~~~  217 (313)
T d1ogqa_         187 TGKIPPTFANL-------------------------------------------------NLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             EEECCGGGGGC-------------------------------------------------CCSEEECCSSEEEECCGGGC
T ss_pred             ccccccccccc-------------------------------------------------cccccccccccccccccccc
Confidence            98888877653                                                 23468999999999999999


Q ss_pred             hhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCcc
Q 038149          727 GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES  806 (844)
Q Consensus       727 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~  806 (844)
                      +.+++|+.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.++++++|++|||++|+|+|.||+.+.+.+++.+
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             ccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence            999999999999999998766 5899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcCccCCCCCC
Q 038149          807 NYRGNPYLCGPAVRKNCS  824 (844)
Q Consensus       807 ~~~gn~~lc~~~~~~~c~  824 (844)
                      ++.||+.+||.|+. .|.
T Consensus       297 ~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         297 AYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             GTCSSSEEESTTSS-CCC
T ss_pred             HhCCCccccCCCCC-CCC
Confidence            99999999999874 673

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.2e-26  Score=250.39  Aligned_cols=321  Identities=23%  Similarity=0.282  Sum_probs=190.4

Q ss_pred             CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149          394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF  473 (844)
Q Consensus       394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (844)
                      .+|++|+++++.|+. + +.+..+++|++|++++|+++ .++.  +..+++|++|++++|++.+..  .+..+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccccc
Confidence            344444444444442 1 23444444555555555443 2322  344445555555555444321  244444555555


Q ss_pred             CCCCcCcccccccccCCCCCcEEEccCcccCcC-------------------CChhhhcCCCCCEEeCCCCcccccCCcc
Q 038149          474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ-------------------LPRWIGKFSNLDVLLMSRNSFEGDVSVQ  534 (844)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-------------------~p~~l~~l~~L~~L~ls~n~l~~~~~~~  534 (844)
                      ++++.+++..+  ......+.......|.+...                   ....+.............|...  ....
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  192 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISV  192 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCGG
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--cccc
Confidence            55444443222  12223344444444433321                   1122334444445555554432  2334


Q ss_pred             ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCE
Q 038149          535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRA  614 (844)
Q Consensus       535 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  614 (844)
                      +..+++++.+++++|.+.+..+. ..+++|+.|++++|.++. + ..+..+++|+.|++++|++++..+  ++.+++|++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             cccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCE
Confidence            55666777777777776654432 245667777777777663 2 356667777777777777775433  566777777


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeec
Q 038149          615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAK  694 (844)
Q Consensus       615 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (844)
                      |++++|++++..  .+..++.++.+++++|.+++.  ..+.                                       
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~---------------------------------------  304 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPIS---------------------------------------  304 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGG---------------------------------------
T ss_pred             eeccCcccCCCC--ccccccccccccccccccccc--cccc---------------------------------------
Confidence            777777776432  356667777777777776531  1111                                       


Q ss_pred             cccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccc
Q 038149          695 NRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPEL  774 (844)
Q Consensus       695 ~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  774 (844)
                               .++.++.|++++|++++. + .+..+++|++|++++|+|++ +| .++++++|++||+++|++++.+|  +
T Consensus       305 ---------~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l  369 (384)
T d2omza2         305 ---------NLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--L  369 (384)
T ss_dssp             ---------GCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--G
T ss_pred             ---------hhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--h
Confidence                     145778899999999864 3 37889999999999999984 44 58899999999999999997654  8


Q ss_pred             cCCCCCCEEEccCC
Q 038149          775 GELSFLAIFNVSYN  788 (844)
Q Consensus       775 ~~l~~L~~L~ls~N  788 (844)
                      .++++|+.|++++|
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            88999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.5e-25  Score=243.82  Aligned_cols=319  Identities=23%  Similarity=0.268  Sum_probs=214.6

Q ss_pred             CCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcE
Q 038149          368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEF  447 (844)
Q Consensus       368 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  447 (844)
                      +++|++|++++|++++ ++. + ..+++|++|++++|.+.+. + .++.+++|+.|+++++.+++. +.  ......+..
T Consensus        65 L~nL~~L~Ls~N~l~~-l~~-l-~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~-~~--~~~~~~~~~  136 (384)
T d2omza2          65 LNNLTQINFSNNQLTD-ITP-L-KNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI-DP--LKNLTNLNR  136 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSE
T ss_pred             CCCCCEEeCcCCcCCC-Ccc-c-cCCcccccccccccccccc-c-ccccccccccccccccccccc-cc--ccccccccc
Confidence            4555555555555543 332 2 2367777777777777643 2 366777777777777776542 22  234456666


Q ss_pred             EeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcc
Q 038149          448 MNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSF  527 (844)
Q Consensus       448 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  527 (844)
                      .....|.+.......................     ...+...+.........|...  .+..+..+++++.+++++|.+
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         137 LELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccch-----hhhhccccccccccccccccc--cccccccccccceeeccCCcc
Confidence            6666665544322222212122111111111     122334455555555555543  344567777888888888887


Q ss_pred             cccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhh
Q 038149          528 EGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN  607 (844)
Q Consensus       528 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~  607 (844)
                      ++..|  +...++|++|++++|.+.. ++....+++|+.+++++|.+++..  .+..+++|++|++++|++++..+  +.
T Consensus       210 ~~~~~--~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~  282 (384)
T d2omza2         210 SDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LA  282 (384)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CCCCc--ccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--cc
Confidence            76544  3556778888888887764 333336778888888888887544  37788899999999999886543  67


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccce
Q 038149          608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRV  687 (844)
Q Consensus       608 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (844)
                      .++.++.+.++.|++++.  ..+..+++++.|++++|++++..|  +..                               
T Consensus       283 ~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~-------------------------------  327 (384)
T d2omza2         283 GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSS-------------------------------  327 (384)
T ss_dssp             TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGG-------------------------------
T ss_pred             cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--ccc-------------------------------
Confidence            788999999999998853  457888999999999999986432  322                               


Q ss_pred             eeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCC
Q 038149          688 EVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN  764 (844)
Q Consensus       688 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  764 (844)
                                       +++|++|++++|+++ .+| .++.+++|++|++++|++++.+|  ++++++|+.|+|++|
T Consensus       328 -----------------l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 -----------------LTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----------------CTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -----------------CCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                             568899999999998 455 58999999999999999997665  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.8e-24  Score=223.61  Aligned_cols=202  Identities=21%  Similarity=0.226  Sum_probs=100.9

Q ss_pred             CcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEcc
Q 038149          420 LLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVS  499 (844)
Q Consensus       420 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  499 (844)
                      ++.++-+++.++ .+|..+   .+++++|++++|+++...+..|.++++|++|++++|.+....|..|.+++.|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            445555555554 455433   2445555555555554444455555555555555555555445555555666666666


Q ss_pred             CcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccC
Q 038149          500 NNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP  579 (844)
Q Consensus       500 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p  579 (844)
                      +|+++. +|..  ....+..|++.+|.+.+..+..+.....+..++...|...                     .....+
T Consensus        88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~---------------------~~~~~~  143 (305)
T d1xkua_          88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK---------------------SSGIEN  143 (305)
T ss_dssp             SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC---------------------GGGBCT
T ss_pred             CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc---------------------ccCCCc
Confidence            665552 3322  2234555555555555444444444444444444443321                     111233


Q ss_pred             ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCc
Q 038149          580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS  652 (844)
Q Consensus       580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  652 (844)
                      ..+..+++|+.+++++|.+.. +|..  .+++|+.|++++|..++..+..+..++.++.|++++|.+++..|.
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~  213 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG  213 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence            345555566666666665552 2322  134555555555555555555555555555555555555433333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.3e-23  Score=220.18  Aligned_cols=245  Identities=19%  Similarity=0.235  Sum_probs=193.4

Q ss_pred             CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149          395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL  474 (844)
Q Consensus       395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (844)
                      ..+.++.++++++ .+|..+.  +.+++|++++|+++ .+|...|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3556777777777 5666553  56788888888875 566655677788888888888888777777888888888888


Q ss_pred             CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc--ccCCccccCCCCCCEEecCCCcCc
Q 038149          475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE--GDVSVQLSNLEVARILDISENKLY  552 (844)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~  552 (844)
                      ++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.+.
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            8888874 44333  467888888888888766666777888888888887543  344556788888999999988876


Q ss_pred             ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                      .. +.. ..++|+.|++++|..++..+..+..++.+++|++++|.+.+..+.++..+++|++|+|++|+++ .+|.++..
T Consensus       164 ~l-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TI-PQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SC-CSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cc-Ccc-cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            43 322 3678999999999999888899999999999999999999888889999999999999999998 67888999


Q ss_pred             CCCCCEEEcCCCccccC
Q 038149          633 LRKLAIVDISYNTLNGP  649 (844)
Q Consensus       633 l~~L~~L~Ls~N~l~~~  649 (844)
                      +++|++|+|++|+|+..
T Consensus       241 l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CSSCCEEECCSSCCCCC
T ss_pred             ccCCCEEECCCCccCcc
Confidence            99999999999998843

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-24  Score=220.09  Aligned_cols=56  Identities=16%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149          491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI  546 (844)
Q Consensus       491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l  546 (844)
                      +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+..+..++.++.
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccc
Confidence            34455555555554433344555555555555555554444444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.1e-24  Score=220.69  Aligned_cols=223  Identities=19%  Similarity=0.146  Sum_probs=128.4

Q ss_pred             EEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECC-CC
Q 038149          495 VLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPH-NN  572 (844)
Q Consensus       495 ~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~-~n  572 (844)
                      .++.++++++ .+|..+.  +++++|+|++|+++...+..|.+++.|++|++++|.+....+..+ ....++.+... .+
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4566666666 5665443  567888888888887666778888888888888887766555444 45555555443 34


Q ss_pred             ccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCc
Q 038149          573 SLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPS  652 (844)
Q Consensus       573 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  652 (844)
                      .++...+..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|++++..|.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            44444455556666666666666665554455555555555555555555544444555555555555555555544443


Q ss_pred             hhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcccc
Q 038149          653 CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEI  732 (844)
Q Consensus       653 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  732 (844)
                      +|.+                                                +++|+.+++++|++++..|..|..+++|
T Consensus       172 ~f~~------------------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         172 AFRG------------------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTT------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhcc------------------------------------------------ccccchhhhhhccccccChhHhhhhhhc
Confidence            3333                                                2344555555555555445555555555


Q ss_pred             CeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149          733 HALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG  768 (844)
Q Consensus       733 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  768 (844)
                      ++||+++|++++..|..|+.+++|+.|+|++|.+.+
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCCC
Confidence            555555555554444455555555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.7e-22  Score=202.70  Aligned_cols=203  Identities=22%  Similarity=0.195  Sum_probs=161.3

Q ss_pred             CCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEE
Q 038149          537 NLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALL  616 (844)
Q Consensus       537 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  616 (844)
                      ....+.+++.+++.++. +|..+ .+.+++|+|++|++++..+..|.++++|++|+|++|+++. ++ .++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            45566778888888875 45432 3578899999999887667788888999999999998884 34 356788899999


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccc
Q 038149          617 LRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNR  696 (844)
Q Consensus       617 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (844)
                      |++|+++ .++..+..+++|+.|++++|.+.+..+..+..                                        
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------------------  122 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------------------------  122 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------------------------------
T ss_pred             ccccccc-ccccccccccccccccccccccceeecccccc----------------------------------------
Confidence            9999888 45677888888999999988887544444433                                        


Q ss_pred             cccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccC
Q 038149          697 YESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGE  776 (844)
Q Consensus       697 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  776 (844)
                              +.++++|++++|.+++..+..+..++.|+.|++++|++++..+..|+.+++|++|||++|+|+ .+|+++..
T Consensus       123 --------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         123 --------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             --------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             --------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence                    456788899999888666677778888999999999998877788888999999999999988 78888888


Q ss_pred             CCCCCEEEccCCccccc
Q 038149          777 LSFLAIFNVSYNNLSGT  793 (844)
Q Consensus       777 l~~L~~L~ls~N~l~g~  793 (844)
                      +++|+.|+|++|++.+.
T Consensus       194 ~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TCCCSEEECCSCCBCCS
T ss_pred             CCCCCEEEecCCCCCCC
Confidence            88899999998888653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-21  Score=197.82  Aligned_cols=126  Identities=21%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECC
Q 038149          516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR  594 (844)
Q Consensus       516 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  594 (844)
                      .+.+++.+++.++ .+|..+.  +++++|+|++|++.+..+..+ .+++|++|++++|+++ .+| .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            3344444444444 2333221  234455555554444333322 4444555555555444 222 23344445555555


Q ss_pred             CCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149          595 DNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       595 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      +|++++ .+..+..+++|++|++++|++.+..+..+..+.+++.|++++|.++
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             cccccc-cccccccccccccccccccccceeeccccccccccccccccccccc
Confidence            554442 2334444445555555555444444444444445555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.8e-17  Score=176.84  Aligned_cols=159  Identities=29%  Similarity=0.354  Sum_probs=77.3

Q ss_pred             CcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecC
Q 038149          468 KLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDIS  547 (844)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls  547 (844)
                      .|++|++++|.+.. +|. +..+++|++|++++|.+... +.   ....+..+.+..+...  ....+..++.++.++++
T Consensus        99 ~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          99 LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred             cccccccccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccc
Confidence            35555555555442 222 34455555555555554422 11   1234444444444332  12234445555555555


Q ss_pred             CCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCC
Q 038149          548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP  627 (844)
Q Consensus       548 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  627 (844)
                      +|........   ....+.+...++.+. .++ .+..++.|+.+++++|.... ++.   ...++..+.+.++++.. .+
T Consensus       171 ~n~~~~~~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~~  240 (353)
T d1jl5a_         171 NNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LP  240 (353)
T ss_dssp             SSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CC
T ss_pred             cccccccccc---ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccc-cc
Confidence            5554322211   122334444444443 233 34566777778877776653 332   24567777777777662 22


Q ss_pred             cccCCCCCCCEEEcCCCccc
Q 038149          628 EPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       628 ~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      .   ....+...++..+.+.
T Consensus       241 ~---~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         241 E---LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             C---CCTTCCEEECCSSCCS
T ss_pred             c---cccccccccccccccc
Confidence            2   2345666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=2.9e-17  Score=175.13  Aligned_cols=58  Identities=31%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             ccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 038149          729 LGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       729 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      +++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|+.   +.+|++|++++|+++ .+|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            345555555555555 34432   344555555555555 44432   234555566666554 344

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-20  Score=205.92  Aligned_cols=381  Identities=18%  Similarity=0.162  Sum_probs=229.3

Q ss_pred             CCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhh----c
Q 038149          370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT----S  441 (844)
Q Consensus       370 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~  441 (844)
                      +|++|+++++++++..-..+...+++++.|+|++|.++.    .+...+..+++|++|+|++|+++......+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777777654323333346778888888887763    23445567788888888888774211111111    2


Q ss_pred             CCCCcEEeCcCcccCCc----CCccccCCCCcCEecCCCCcCccccccc----cc-CCCCCcEEEccCcccCcC----CC
Q 038149          442 CVSLEFMNLSHNYFDGQ----IFPKYMNLAKLVFLFLNDNQFTGRLEVG----LL-NASSLYVLDVSNNMLSGQ----LP  508 (844)
Q Consensus       442 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~ls~n~l~~~----~p  508 (844)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.+.......    +. ..............+...    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34688888888887654    2344567778888888888776432111    11 122334444444333211    11


Q ss_pred             hhhhcCCCCCEEeCCCCcccccC----Cccc-cCCCCCCEEecCCCcCcccCC-----CCCCCCCCcEEECCCCcccc--
Q 038149          509 RWIGKFSNLDVLLMSRNSFEGDV----SVQL-SNLEVARILDISENKLYGPLE-----FSSNHSSLRYLFPHNNSLSG--  576 (844)
Q Consensus       509 ~~l~~l~~L~~L~ls~n~l~~~~----~~~l-~~l~~L~~L~ls~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~--  576 (844)
                      ..+.....++.++++++......    ...+ ........+++..+.+.....     .......++.+.+.+|.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            22345677888888877654211    0011 122345567777665532111     01145677888888887642  


Q ss_pred             ---ccCccccCCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCCcccccCCcc----c-CCCCCCCEEEcCCC
Q 038149          577 ---TIPNALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGNIPEP----L-CHLRKLAIVDISYN  644 (844)
Q Consensus       577 ---~~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~----l-~~l~~L~~L~Ls~N  644 (844)
                         ..+........++.+++++|.+...    ....+...+.++.+++++|.++......    + .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               2233444567888888888887643    2334566788888888888876432211    1 23457888888888


Q ss_pred             ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC---
Q 038149          645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD---  721 (844)
Q Consensus       645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~---  721 (844)
                      .++..-...+.++.                                            ...++|++|||++|++++.   
T Consensus       323 ~l~~~~~~~l~~~~--------------------------------------------~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         323 SFTAACCSHFSSVL--------------------------------------------AQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             CCBGGGHHHHHHHH--------------------------------------------HHCSSCCEEECCSSBCHHHHHH
T ss_pred             chhhhhhhhccccc--------------------------------------------ccccchhhhheeeecccCcccc
Confidence            87643333332210                                            0134688999999998753   


Q ss_pred             -CCchhh-hccccCeEeccCcccccc----cCcccccccCCCEEeCCCCcccccCCccc----c-CCCCCCEEEccCCcc
Q 038149          722 -IPSEIG-YLGEIHALNLSNNFLSGS----IPRSFSNLKMTESMDLSYNKLNGQIPPEL----G-ELSFLAIFNVSYNNL  790 (844)
Q Consensus       722 -ip~~l~-~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~-~l~~L~~L~ls~N~l  790 (844)
                       ++..+. ..+.|++|+|++|+|+..    ++..+...++|++|||++|+++......+    . ....|++|++.+|++
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence             333333 356799999999999743    55567778999999999999876433333    2 334689999999988


Q ss_pred             cccC
Q 038149          791 SGTV  794 (844)
Q Consensus       791 ~g~i  794 (844)
                      ....
T Consensus       439 ~~~~  442 (460)
T d1z7xw1         439 SEEM  442 (460)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.3e-20  Score=203.71  Aligned_cols=78  Identities=22%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             CCCcEEECCCCccccc----cCccccCCCCCCEEECCCCcCCcccchh----hh-CCCCCCEEEccCCcccccCCccc--
Q 038149          562 SSLRYLFPHNNSLSGT----IPNALLQSSQLTTLDLRDNEFSGNIAHL----IN-EDSNLRALLLRGNNLQGNIPEPL--  630 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~L~~N~l~~~~p~~l--  630 (844)
                      +.|++|++++|.++..    ++..+..+++|++|||++|+++......    +. ....|+.|++.+|.+.......+  
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            4456666666666532    3445666777888888888776433322    22 23468888888887764433322  


Q ss_pred             --CCCCCCCEE
Q 038149          631 --CHLRKLAIV  639 (844)
Q Consensus       631 --~~l~~L~~L  639 (844)
                        ...++|++|
T Consensus       449 l~~~~~~l~~~  459 (460)
T d1z7xw1         449 LEKDKPSLRVI  459 (460)
T ss_dssp             HHHHCTTSEEE
T ss_pred             HHHhCCCCEEe
Confidence              234555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.8e-17  Score=164.48  Aligned_cols=186  Identities=23%  Similarity=0.252  Sum_probs=105.6

Q ss_pred             CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeC
Q 038149          443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLM  522 (844)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  522 (844)
                      .+|+.|++.+|.++..  ..+..+++|++|++++|++++..+  +..+++++++++++|.++. ++ .+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-ccccccccccccc
Confidence            3444444444444322  223444444444444444443222  4445555555555555442 22 3445555555555


Q ss_pred             CCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149          523 SRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI  602 (844)
Q Consensus       523 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  602 (844)
                      +++...+..  .+...+.++.+.++++.+....+ ...+++|+.|++++|.+++.  ..+.++++|++|++++|++++. 
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             ccccccccc--hhccccchhhhhchhhhhchhhh-hccccccccccccccccccc--hhhcccccceecccCCCccCCC-
Confidence            555544322  23444555555555555543222 22455666677766666533  2377788888888888888753 


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY  643 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  643 (844)
                      + .++.+++|++|+|++|++++. + .+.++++|++|++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            3 377888888888888888843 3 378888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.5e-17  Score=163.49  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCC
Q 038149          470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN  549 (844)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n  549 (844)
                      ..++++.+++++..  .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|.+++..|  +..+++++++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            33445555554332  23344566666666666653 32 35566666666666665553322  444444444444444


Q ss_pred             c
Q 038149          550 K  550 (844)
Q Consensus       550 ~  550 (844)
                      .
T Consensus        96 ~   96 (227)
T d1h6ua2          96 P   96 (227)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.9e-17  Score=159.46  Aligned_cols=109  Identities=19%  Similarity=0.240  Sum_probs=57.4

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      +|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+....+... -...++.+.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~  157 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLN  157 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCS
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhhhccc
Confidence            45555666666654445556666666666666666665555566666666666666666653322111 11224444555


Q ss_pred             CCcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149          787 YNNLSGTVPNKGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       787 ~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      .|.+.+..|..  +....-.++..|..-|..+
T Consensus       158 ~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         158 GGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             GGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             CCCeEeCCChh--hcCCEeeecCHhhCcCCCC
Confidence            56665555542  3333334455555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.3e-17  Score=158.86  Aligned_cols=175  Identities=18%  Similarity=0.201  Sum_probs=96.4

Q ss_pred             EEECCCCccccccCccccCCCCCCEEECCCCcCCccc-chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI-AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      .++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|++|+|++|++.+..+..+..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3444444444 4444332  45566666666665432 344555666666666666666555666666666666666666


Q ss_pred             ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc
Q 038149          645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS  724 (844)
Q Consensus       645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  724 (844)
                      +|++..|.+|.+                                                +++|++|+|++|+|++..|.
T Consensus        89 ~l~~l~~~~F~~------------------------------------------------l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          89 KIKEISNKMFLG------------------------------------------------LHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCCEECSSSSTT------------------------------------------------CTTCCEEECCSSCCCEECTT
T ss_pred             cccccCHHHHhC------------------------------------------------CCcccccccCCccccccCHH
Confidence            666544544443                                                34556666666666655555


Q ss_pred             hhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 038149          725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVP  795 (844)
Q Consensus       725 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  795 (844)
                      .|..+++|++|+|++|.+....+.. .-...++.+.+..|.++...|..+.   .++.++++.|.+...-+
T Consensus       121 ~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~l~---~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCCC
T ss_pred             HhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChhhc---CCEeeecCHhhCcCCCC
Confidence            5666666666666666665332211 1112344555666666666665443   34566777777765433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.2e-16  Score=151.62  Aligned_cols=163  Identities=29%  Similarity=0.439  Sum_probs=128.7

Q ss_pred             cCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccC
Q 038149           94 VPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVN  173 (844)
Q Consensus        94 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  173 (844)
                      ..++++++|++++|.+..+      ..+..+++|++|++++|++++..+  ++++++|++|++++|.+..  ++  .+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l------~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~--~~--~l~~  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT--PLAN  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--CG--GGTT
T ss_pred             HHhcCCCEEECCCCCCCCc------cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc--cc--cccc
Confidence            4567888999998888765      346778899999999998877544  8889999999999988744  33  5788


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCe
Q 038149          174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEY  253 (844)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~  253 (844)
                      +++|+.|++++|.+.. +  ..+..+++|++|++++|.+.. + +.+..+++|++|++++|+++ .++  .++++++|++
T Consensus       105 l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~--~l~~l~~L~~  176 (199)
T d2omxa2         105 LTNLTGLTLFNNQITD-I--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLK--PLANLTTLER  176 (199)
T ss_dssp             CTTCSEEECCSSCCCC-C--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCCE
T ss_pred             cccccccccccccccc-c--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCc--cccCCCCCCE
Confidence            8999999999888773 3  347888999999999998874 3 45888899999999999988 454  4888999999


Q ss_pred             EecCCCcccCccChhhhcCCCCCCEE
Q 038149          254 LSLFDNHFQESFPLSVLANHSRLEVF  279 (844)
Q Consensus       254 L~L~~n~l~~~~~~~~l~~l~~L~~L  279 (844)
                      |++++|++++ ++  .++.+++|+.|
T Consensus       177 L~ls~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCC-CG--GGGGCTTCSEE
T ss_pred             EECCCCCCCC-Cc--cccCCCCCCcC
Confidence            9999998875 33  36777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.8e-16  Score=152.42  Aligned_cols=164  Identities=21%  Similarity=0.330  Sum_probs=119.3

Q ss_pred             CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149          562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI  641 (844)
Q Consensus       562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  641 (844)
                      .+|+.|++++|.++. ++ .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            345555555555553 22 3667788888888888887543  25678888888888888874 44 4778888888888


Q ss_pred             CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149          642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD  721 (844)
Q Consensus       642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  721 (844)
                      ++|.+.. ++ .+..                                                ++.++.+++++|.+++ 
T Consensus       120 ~~~~~~~-~~-~l~~------------------------------------------------l~~l~~l~~~~n~l~~-  148 (210)
T d1h6ta2         120 EHNGISD-IN-GLVH------------------------------------------------LPQLESLYLGNNKITD-  148 (210)
T ss_dssp             TTSCCCC-CG-GGGG------------------------------------------------CTTCCEEECCSSCCCC-
T ss_pred             ccccccc-cc-cccc------------------------------------------------cccccccccccccccc-
Confidence            8887652 11 2222                                                4567888888888874 


Q ss_pred             CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149          722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY  787 (844)
Q Consensus       722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  787 (844)
                       +..+..+++|+++++++|++++ ++ .++++++|+.|+|++|+++ .+| .+..+++|++|+|++
T Consensus       149 -~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 -ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence             3357788899999999999985 33 3888999999999999987 455 588899999998874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-16  Score=159.23  Aligned_cols=80  Identities=16%  Similarity=0.008  Sum_probs=44.2

Q ss_pred             cceEEEeecCcccCCCCchhhhccccCe-EeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEc
Q 038149          707 YMTGLDLSSNELTGDIPSEIGYLGEIHA-LNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV  785 (844)
Q Consensus       707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  785 (844)
                      .++.|++++|+++ .++........++. +++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            3455666666666 33333333344333 345666666333344666777777777777776443445666666666555


Q ss_pred             cC
Q 038149          786 SY  787 (844)
Q Consensus       786 s~  787 (844)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-16  Score=158.36  Aligned_cols=218  Identities=16%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcC-CccccCCCCcCEecCC
Q 038149          397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI-FPKYMNLAKLVFLFLN  475 (844)
Q Consensus       397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~  475 (844)
                      +.++.++..++ .+|..+.  +++++|++++|+++ .+|...|.++++|++|++++|.+...+ +..|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34445555544 3443332  34555555555553 444444455555555555555554322 2344555555555543


Q ss_pred             C-CcCcccccccccCCCCCcEEEccCcccCcCCC-hhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcc
Q 038149          476 D-NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG  553 (844)
Q Consensus       476 ~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  553 (844)
                      . |.+....+..|.++++|+++++++|++....+ ..+..+..+..+...++.+....+..+.+++              
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------  152 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  152 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc--------------
Confidence            2 34444444555555666666666665543211 1122333333444444444433333333332              


Q ss_pred             cCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEE-ECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149          554 PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL-DLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH  632 (844)
Q Consensus       554 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  632 (844)
                              ..++.+++++|+++. ++......++++++ ++++|+++...+..|.++++|++|+|++|+++...+..|.+
T Consensus       153 --------~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         153 --------FESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             --------SSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             --------ccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence                    234444444444442 22222223333333 34445555333344555556666666666555333334445


Q ss_pred             CCCCCEEEc
Q 038149          633 LRKLAIVDI  641 (844)
Q Consensus       633 l~~L~~L~L  641 (844)
                      +++|+++++
T Consensus       224 l~~L~~l~~  232 (242)
T d1xwdc1         224 LKKLRARST  232 (242)
T ss_dssp             CCEEESSSE
T ss_pred             CcccccCcC
Confidence            554444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.7e-16  Score=150.69  Aligned_cols=165  Identities=27%  Similarity=0.394  Sum_probs=120.9

Q ss_pred             CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149           95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL  174 (844)
Q Consensus        95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  174 (844)
                      .+..|++|++++|.+....      .+..+++|++|++++|.+++..  .++.+++|++|++++|+++.  ++  .+.++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~--l~--~l~~l  111 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD--LS--SLKDL  111 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--GG--GGTTC
T ss_pred             HhcCccEEECcCCCCCCch------hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc--cc--ccccc
Confidence            3567788888888777653      3567788888888888887643  36778888888888888753  33  57778


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149          175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL  254 (844)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  254 (844)
                      ++|+.|++++|.+. .+  ..+..+++++++++++|.+++  +..+.++++|+++++++|+++ .++  .+.++++|++|
T Consensus       112 ~~L~~L~l~~~~~~-~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~--~l~~l~~L~~L  183 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNL  183 (210)
T ss_dssp             TTCCEEECTTSCCC-CC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCG--GGTTCTTCCEE
T ss_pred             cccccccccccccc-cc--ccccccccccccccccccccc--ccccccccccccccccccccc-ccc--cccCCCCCCEE
Confidence            88888888888776 33  347778888888888888764  345677888888888888887 454  37788888888


Q ss_pred             ecCCCcccCccChhhhcCCCCCCEEEcc
Q 038149          255 SLFDNHFQESFPLSVLANHSRLEVFQLS  282 (844)
Q Consensus       255 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~  282 (844)
                      ++++|+++. ++  .+.++++|++|+++
T Consensus       184 ~Ls~N~i~~-l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         184 YLSKNHISD-LR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCB-CG--GGTTCTTCSEEEEE
T ss_pred             ECCCCCCCC-Ch--hhcCCCCCCEEEcc
Confidence            888888764 33  37777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.4e-15  Score=144.24  Aligned_cols=160  Identities=33%  Similarity=0.426  Sum_probs=134.4

Q ss_pred             CceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCch
Q 038149           63 GRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLV  142 (844)
Q Consensus        63 ~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  142 (844)
                      .+++.|+++++.+.            +...+..+++|++|++++|.+++..      .++++++|++|++++|.+.... 
T Consensus        40 ~~l~~L~l~~~~i~------------~l~~l~~l~nL~~L~Ls~N~l~~~~------~l~~l~~L~~L~l~~n~~~~~~-  100 (199)
T d2omxa2          40 DQVTTLQADRLGIK------------SIDGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADIT-  100 (199)
T ss_dssp             TTCCEEECTTSCCC------------CCTTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             cCCCEEECCCCCCC------------CccccccCCCcCcCccccccccCcc------cccCCccccccccccccccccc-
Confidence            46778999887751            1234678999999999999998864      3789999999999999986643 


Q ss_pred             hhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccC
Q 038149          143 PLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSN  222 (844)
Q Consensus       143 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  222 (844)
                       .+++++.|++|++++|.+..  +  ..+..+++|++|++++|++. .++  .+..+++|++|++.+|.+++.  ..+++
T Consensus       101 -~l~~l~~L~~L~l~~~~~~~--~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l--~~l~~  170 (199)
T d2omxa2         101 -PLANLTNLTGLTLFNNQITD--I--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDL--KPLAN  170 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCC--C--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC--GGGTT
T ss_pred             -cccccccccccccccccccc--c--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCC--ccccC
Confidence             48999999999999998843  2  35889999999999999997 343  589999999999999999864  35899


Q ss_pred             CCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149          223 LTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL  254 (844)
Q Consensus       223 l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  254 (844)
                      +++|++|++++|+++ .++  .++++++|++|
T Consensus       171 l~~L~~L~ls~N~i~-~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVS-DIS--VLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCC-CCG--GGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCC-CCc--cccCCCCCCcC
Confidence            999999999999998 565  58899999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=154.43  Aligned_cols=223  Identities=20%  Similarity=0.192  Sum_probs=134.8

Q ss_pred             EEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCC
Q 038149          325 YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQN  404 (844)
Q Consensus       325 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n  404 (844)
                      .+|++++.+.......+..  .....+.+................+|++|+++++.+.+.....+...+++|++|++++|
T Consensus         4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             EEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            5566665543322222221  12334444444443332223355678888888887766555555566888999999988


Q ss_pred             cCCCCCCccccccccCcEEeccCC-cCCCCCChhhhhcCCCCcEEeCcCcc-cCCcC-Cccc-cCCCCcCEecCCCCc--
Q 038149          405 SFEGSIPPSMGYMERLLFLDLSSN-NFSRDLPKHFLTSCVSLEFMNLSHNY-FDGQI-FPKY-MNLAKLVFLFLNDNQ--  478 (844)
Q Consensus       405 ~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~-~~l~~L~~L~L~~n~--  478 (844)
                      .+++..+..++.+++|++|++++| .++...-..+...+++|++|++++|. +++.. ...+ ..++.|+.|+++++.  
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            888777777888888999999886 44422222334678888888888763 33211 1112 234677788777652  


Q ss_pred             Cccc-ccccccCCCCCcEEEccCc-ccCcCCChhhhcCCCCCEEeCCCC-cccccCCccccCCCCCCEEecCCC
Q 038149          479 FTGR-LEVGLLNASSLYVLDVSNN-MLSGQLPRWIGKFSNLDVLLMSRN-SFEGDVSVQLSNLEVARILDISEN  549 (844)
Q Consensus       479 l~~~-~~~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~ls~n-~l~~~~~~~l~~l~~L~~L~ls~n  549 (844)
                      ++.. +.....++++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3322 2222345677777777775 456556666777777777777775 455555555666666777766655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.8e-15  Score=152.60  Aligned_cols=257  Identities=16%  Similarity=0.147  Sum_probs=135.4

Q ss_pred             CEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCc
Q 038149          372 PHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLS  451 (844)
Q Consensus       372 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  451 (844)
                      +++|++++.+..........  .....+.++...+..... ......+|++||+++|.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35677766554333333322  234566666555543222 233455788888888777654445556777777777777


Q ss_pred             CcccCCcCCccccCCCCcCEecCCCC-cCccc-ccccccCCCCCcEEEccCcc-cCcC-CChhhh-cCCCCCEEeCCCCc
Q 038149          452 HNYFDGQIFPKYMNLAKLVFLFLNDN-QFTGR-LEVGLLNASSLYVLDVSNNM-LSGQ-LPRWIG-KFSNLDVLLMSRNS  526 (844)
Q Consensus       452 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~-l~~~-~p~~l~-~l~~L~~L~ls~n~  526 (844)
                      +|.+++..+..+..+++|++|++++| .++.. +......+++|++|++++|. +++. +...+. .+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            77776655566666777777777764 34321 11122345666666666652 3221 111122 23556666666542


Q ss_pred             --cccc-CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCC-cCCccc
Q 038149          527 --FEGD-VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSGNI  602 (844)
Q Consensus       527 --l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~  602 (844)
                        ++.. +.....++++|++|++++|.                      .+++.....+.++++|++|++++| .+++..
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~----------------------~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSV----------------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCT----------------------TCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             ccccccccccccccccccccccccccc----------------------CCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence              2211 11112334444444444432                      244455555666677777777764 455555


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149          603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN  656 (844)
Q Consensus       603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  656 (844)
                      ...++.+++|++|+++++--.+.++.....+++|   ++..+++++..++.+++
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            5556667777777777662111122112234444   34566666665555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-14  Score=129.69  Aligned_cols=66  Identities=27%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC-cccccCCCCCCEEECcCCCCC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-PQCLSNLTYLRVLDLSSNKLS  237 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~  237 (844)
                      +..+++|++|++++|+++ .++...+..+++|++|++++|.++... ...+..+++|++|++++|.++
T Consensus        59 ~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccCcchhhhhccccccc-CCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            333444444444444443 222222333444444444444443211 123344444444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.5e-14  Score=129.50  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=106.9

Q ss_pred             CCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCccc
Q 038149           91 SLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKG  170 (844)
Q Consensus        91 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  170 (844)
                      ..|.+...+|+|||++|+|+.+..     .+..+++|++|+|++|.++..  +.|..+++|++|++++|.++.  ++...
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~-----~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~--l~~~~   82 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGL   82 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCH
T ss_pred             HhccCcCcCcEEECCCCCCCccCc-----cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC--CCccc
Confidence            456788899999999999998743     456789999999999999764  458999999999999999965  55456


Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC---cccccCCCCCCEEEC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL---PQCLSNLTYLRVLDL  231 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  231 (844)
                      +..+++|++|++++|+++..-....+..+++|++|++++|.++...   +..+..+++|++||-
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            7789999999999999983222356889999999999999987542   124677888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.2e-13  Score=119.44  Aligned_cols=104  Identities=29%  Similarity=0.325  Sum_probs=45.5

Q ss_pred             hcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC-cccccCC
Q 038149          145 LTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-PQCLSNL  223 (844)
Q Consensus       145 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l  223 (844)
                      +.++++|++|++++|.++.  +| ..+..+++|++|++++|.++ .++  .+..+++|++|++++|+++... ...++.+
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp-~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~   89 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LP-PALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSC   89 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CC-GGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             cccCCCCCEEECCCCccCc--ch-hhhhhhhccccccccccccc-ccC--ccccccccCeEECCCCccCCCCCchhhcCC
Confidence            3344444444444444422  33 23444444444444444444 222  2445555555555555554322 1344555


Q ss_pred             CCCCEEECcCCCCCC--CCChhhhcCCCCCCeE
Q 038149          224 TYLRVLDLSSNKLSG--NLPLSVIANLTSLEYL  254 (844)
Q Consensus       224 ~~L~~L~Ls~n~l~~--~~p~~~l~~l~~L~~L  254 (844)
                      ++|++|++++|.++.  .++...+..+++|+.|
T Consensus        90 ~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            555555555555541  1122333445555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.6e-14  Score=151.13  Aligned_cols=244  Identities=17%  Similarity=0.161  Sum_probs=127.6

Q ss_pred             cccCCCCCcEEEccCcccCcC----CChhhhcCCCCCEEeCCCCccccc----------CCccccCCCCCCEEecCCCcC
Q 038149          486 GLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGD----------VSVQLSNLEVARILDISENKL  551 (844)
Q Consensus       486 ~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~----------~~~~l~~l~~L~~L~ls~n~l  551 (844)
                      .+.....++.|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            344556677777777766432    222344556666666666543211          111233444555555555544


Q ss_pred             cccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchh-------------hhCCCCCCEEEcc
Q 038149          552 YGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHL-------------INEDSNLRALLLR  618 (844)
Q Consensus       552 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-------------l~~l~~L~~L~L~  618 (844)
                      ......                   .+...+..+++|++|++++|.+.......             ....+.|+.++++
T Consensus       106 ~~~~~~-------------------~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1         106 GPTAQE-------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             CTTTHH-------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             cccccc-------------------chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            321100                   12233444556666666666553211100             1234566666666


Q ss_pred             CCccccc----CCcccCCCCCCCEEEcCCCccccCCCch-hhccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149          619 GNNLQGN----IPEPLCHLRKLAIVDISYNTLNGPIPSC-FTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA  693 (844)
Q Consensus       619 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (844)
                      +|+++..    +...+...+.|+.|++++|+++..-... +...                                    
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~------------------------------------  210 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG------------------------------------  210 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT------------------------------------
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhh------------------------------------
Confidence            6665421    2233445566777777777664210000 0000                                    


Q ss_pred             ccccccccccccccceEEEeecCcccCC----CCchhhhccccCeEeccCcccccccCccc----c--cccCCCEEeCCC
Q 038149          694 KNRYESYKGDVLKYMTGLDLSSNELTGD----IPSEIGYLGEIHALNLSNNFLSGSIPRSF----S--NLKMTESMDLSY  763 (844)
Q Consensus       694 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~--~l~~L~~L~Ls~  763 (844)
                              ....+.|+.|+|++|.++..    +...+..++.|++|+|++|.|++.-...+    .  ..+.|++||+++
T Consensus       211 --------l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         211 --------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             --------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             --------hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence                    01134667777777776532    34455667777888888887775433333    2  235688888888


Q ss_pred             Cccccc----CCcccc-CCCCCCEEEccCCcccc
Q 038149          764 NKLNGQ----IPPELG-ELSFLAIFNVSYNNLSG  792 (844)
Q Consensus       764 N~l~~~----ip~~l~-~l~~L~~L~ls~N~l~g  792 (844)
                      |+++..    +...+. +.+.|++|++++|++..
T Consensus       283 N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            887643    233332 46778888888888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.9e-14  Score=152.30  Aligned_cols=198  Identities=17%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             hcCCCCcEEeCcCcccCCcC----CccccCCCCcCEecCCCCcCccc----------ccccccCCCCCcEEEccCcccCc
Q 038149          440 TSCVSLEFMNLSHNYFDGQI----FPKYMNLAKLVFLFLNDNQFTGR----------LEVGLLNASSLYVLDVSNNMLSG  505 (844)
Q Consensus       440 ~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~ls~n~l~~  505 (844)
                      ....+++.|+|++|.+....    ...+...++|+.++++++.....          +...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            45667777777777665421    12344556666666666543211          11223344555555655555543


Q ss_pred             C----CChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc----c
Q 038149          506 Q----LPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG----T  577 (844)
Q Consensus       506 ~----~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~  577 (844)
                      .    +...+..+++|+.|++++|.+.......+..  .+..+...        ......+.|+.+.+++|.++.    .
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~~--------~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVN--------KKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHH--------HHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccchhhhhcccccchheecccccccccccccccc--cccccccc--------cccccCcccceeeccccccccccccc
Confidence            2    1222334455555555555443111100000  00000000        000022334444444444331    1


Q ss_pred             cCccccCCCCCCEEECCCCcCCcc-----cchhhhCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccc
Q 038149          578 IPNALLQSSQLTTLDLRDNEFSGN-----IAHLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLN  647 (844)
Q Consensus       578 ~p~~l~~l~~L~~L~Ls~N~l~~~-----~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  647 (844)
                      +...+..++.|+.|++++|+++..     +...+..+++|+.|+|++|+++..    +...+..+++|+.|+|++|.|+
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            223344455666666666665421     122344455555555555555321    2233445555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.1e-13  Score=117.12  Aligned_cols=87  Identities=28%  Similarity=0.355  Sum_probs=40.8

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCC-hhhhcCCC
Q 038149          171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLP-LSVIANLT  249 (844)
Q Consensus       171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~l~~l~  249 (844)
                      +.++++|++|++++|+++ .+|. .++.+++|++|++++|.+++. | .++++++|++|++++|+++ .++ ...+..++
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP   90 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCT
T ss_pred             cccCCCCCEEECCCCccC-cchh-hhhhhhccccccccccccccc-C-ccccccccCeEECCCCccC-CCCCchhhcCCC
Confidence            444455555555555554 3332 344455555555555555432 2 2445555555555555554 222 12344455


Q ss_pred             CCCeEecCCCccc
Q 038149          250 SLEYLSLFDNHFQ  262 (844)
Q Consensus       250 ~L~~L~L~~n~l~  262 (844)
                      +|++|++++|.++
T Consensus        91 ~L~~L~l~~N~i~  103 (124)
T d1dcea3          91 RLVLLNLQGNSLC  103 (124)
T ss_dssp             TCCEEECTTSGGG
T ss_pred             CCCEEECCCCcCC
Confidence            5555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=1.1e-13  Score=132.85  Aligned_cols=143  Identities=19%  Similarity=0.236  Sum_probs=101.1

Q ss_pred             CCEEECCCC--cCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCc
Q 038149          588 LTTLDLRDN--EFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGN  665 (844)
Q Consensus       588 L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~  665 (844)
                      ++.+++++.  .+. .++..+..+++|++|+|++|+|+ .++ .+..+++|+.|+|++|+|+ .+|..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc---------
Confidence            445555543  222 45667788888888888888887 444 4778888888888888876 34433221         


Q ss_pred             ccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccc
Q 038149          666 YYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS  745 (844)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  745 (844)
                                                             ++.|+.|++++|+++ .++ .+..+++|++|++++|+|+..
T Consensus        92 ---------------------------------------~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          92 ---------------------------------------ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             ---------------------------------------HHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCH
T ss_pred             ---------------------------------------ccccccccccccccc-ccc-cccccccccccccccchhccc
Confidence                                                   346788899999888 343 478888899999999988743


Q ss_pred             cC-cccccccCCCEEeCCCCcccccCCcc----------ccCCCCCCEEE
Q 038149          746 IP-RSFSNLKMTESMDLSYNKLNGQIPPE----------LGELSFLAIFN  784 (844)
Q Consensus       746 ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~  784 (844)
                      .. ..++.+++|+.|+|++|.+....+..          +..+++|++||
T Consensus       131 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            22 46788888999999999887654433          56678888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=3.2e-13  Score=129.45  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=104.8

Q ss_pred             ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149          577 TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN  656 (844)
Q Consensus       577 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  656 (844)
                      .++..+..+++|++|+|++|+|+. ++ .+..+++|++|+|++|+++ .+|.....+++|+.|++++|+++. ++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            456778889999999999999985 44 4888999999999999998 566656666789999999999874 22 2322


Q ss_pred             cccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC--chhhhccccCe
Q 038149          657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP--SEIGYLGEIHA  734 (844)
Q Consensus       657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~  734 (844)
                                                                      +++|+.|++++|+++. ++  ..+..+++|+.
T Consensus       114 ------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~  144 (198)
T d1m9la_         114 ------------------------------------------------LVNLRVLYMSNNKITN-WGEIDKLAALDKLED  144 (198)
T ss_dssp             ------------------------------------------------HHHSSEEEESEEECCC-HHHHHHHTTTTTCSE
T ss_pred             ------------------------------------------------cccccccccccchhcc-ccccccccCCCccce
Confidence                                                            5688999999999984 44  46889999999


Q ss_pred             EeccCcccccccCcc----------cccccCCCEEe
Q 038149          735 LNLSNNFLSGSIPRS----------FSNLKMTESMD  760 (844)
Q Consensus       735 L~Ls~N~l~~~ip~~----------l~~l~~L~~L~  760 (844)
                      |+|++|.+....+..          +..+++|+.||
T Consensus       145 L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             eecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999998665543          67789999988

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-11  Score=111.64  Aligned_cols=110  Identities=20%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             ceEEEeecCcccCCCCchhhhccccCeEeccCc-ccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149          708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNN-FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS  786 (844)
Q Consensus       708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  786 (844)
                      .+.++.+++.+. .+|..+..+++|++|++++| .|+...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345777777777 66777777888888888765 4776556678888888888888888887777778888888888888


Q ss_pred             CCcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149          787 YNNLSGTVPNKGQFANFDESNYRGNPYLCGPA  818 (844)
Q Consensus       787 ~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  818 (844)
                      +|+++...+..-....+..+.+.|||.-|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCch
Confidence            88887433333333356677778888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.8e-10  Score=105.12  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             EEECCCCccccccCccccCCCCCCEEECCCC-cCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149          566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN  644 (844)
Q Consensus       566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  644 (844)
                      .++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444444 34444555555555555443 245444445555555555555555555444555555555555555555


Q ss_pred             ccc
Q 038149          645 TLN  647 (844)
Q Consensus       645 ~l~  647 (844)
                      +|+
T Consensus        91 ~l~   93 (156)
T d2ifga3          91 ALE   93 (156)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.6e-08  Score=90.16  Aligned_cols=69  Identities=25%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCC
Q 038149          144 LLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD  213 (844)
Q Consensus       144 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~  213 (844)
                      .+..+++|++|+|++|+|+........+..+++|++|+|++|.++ .++.-.+....+|++|++++|.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            334555666666666655431111122344555555555555554 222211222234444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.9e-08  Score=89.22  Aligned_cols=80  Identities=21%  Similarity=0.140  Sum_probs=45.8

Q ss_pred             cccceEEEeecCcccCC--CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCcc-------cc
Q 038149          705 LKYMTGLDLSSNELTGD--IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-------LG  775 (844)
Q Consensus       705 l~~L~~LdLs~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-------l~  775 (844)
                      ++.|++|||++|+++..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|.++......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45666677777766632  2344566677777777777776433223333445667777777666544322       44


Q ss_pred             CCCCCCEEE
Q 038149          776 ELSFLAIFN  784 (844)
Q Consensus       776 ~l~~L~~L~  784 (844)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=5.9e-06  Score=75.35  Aligned_cols=66  Identities=14%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             CCCCcEEeCCCC-CCCCCCccccccccCCCCCCCEEeCCCCCCCC----CchhhhcCCCCCCEEECCCCCC
Q 038149           96 FQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNE----SLVPLLTSLTSLTSLFLQGNSF  161 (844)
Q Consensus        96 l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l  161 (844)
                      .+.|++|+|+++ .+.......++.++...++|++|+|++|.+..    .+...+...+.|++|+|++|.+
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            456666666653 34332222233455555666666666666542    2222333444555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=1.7e-05  Score=72.23  Aligned_cols=115  Identities=16%  Similarity=0.098  Sum_probs=55.5

Q ss_pred             CCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCccccc
Q 038149          122 RSLKQLKILNIGYN-SFNES----LVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGI  196 (844)
Q Consensus       122 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l  196 (844)
                      .+.++|+.|+|+++ .+...    +...+...+.|++|+|++|.+......                       ...+.+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~-----------------------~la~~L   68 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-----------------------GLIELI   68 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-----------------------THHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH-----------------------HHhhhh
Confidence            34567777777763 45432    233445556666666666655321111                       011123


Q ss_pred             CCCCCCcEEEccCCcCCcC----CcccccCCCCCCEEECcCCCCCCCCC-------hhhhcCCCCCCeEecCCCc
Q 038149          197 CDLKNLVELNINENEFDGL----LPQCLSNLTYLRVLDLSSNKLSGNLP-------LSVIANLTSLEYLSLFDNH  260 (844)
Q Consensus       197 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p-------~~~l~~l~~L~~L~L~~n~  260 (844)
                      ...+.|++|+|++|.++..    +..++...+.|++|++++|.+. .+.       ...+...++|++|+++.+.
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3334455555555544432    1223445556666666665443 221       1234445667777766553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=3.1e-05  Score=70.41  Aligned_cols=67  Identities=15%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             CCCCCcEEeCCC-CCCCCCCccccccccCCCCCCCEEeCCCCCCCCCch----hhhcCCCCCCEEECCCCCC
Q 038149           95 PFQELHVLDLSD-NRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLV----PLLTSLTSLTSLFLQGNSF  161 (844)
Q Consensus        95 ~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l  161 (844)
                      +.+.|++|+|++ +.++...-..+..++...++|++|++++|.+.....    ..+...+.++++++++|.+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            446677777765 344443333344555666667777777766654222    2334445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00013  Score=66.09  Aligned_cols=63  Identities=22%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             CCCCCCcEEEccCCcCCcC----CcccccCCCCCCEEECc--CCCCCC----CCChhhhcCCCCCCeEecCCCc
Q 038149          197 CDLKNLVELNINENEFDGL----LPQCLSNLTYLRVLDLS--SNKLSG----NLPLSVIANLTSLEYLSLFDNH  260 (844)
Q Consensus       197 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls--~n~l~~----~~p~~~l~~l~~L~~L~L~~n~  260 (844)
                      ...+.++.+++++|.+...    +...+...+.|+.++|+  +|.+..    .+. ..+...++|++|+++.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCCC
Confidence            3445555555555554432    22344555666654443  344431    122 344566777777776654