Citrus Sinensis ID: 038158

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKRHGEGLAKYTA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mqkgkvktitndatkplhqLELIDTLQGLGLAYHFESEIRNILRNIYNknkddkwkkenvRVHATSLEFGLLRQHEVFNGFKETksylisddfNGILSLYVASYYSLIRRRKRhgeglakyta
Flexible Loop (DISEMBL)
mqkgkvktitndatkplhqLELIDTLQGLGLAYHFESEIRNILRNIynknkddkwkkenVRVHATslefgllrqhEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRrrkrhgeglakyta
Low Complexity Region (SEG)
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYnknkddkwkkENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKRHGEGLAKYTA
Disordered region (IsUnstruct)
***************PLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRR*************
Disordered Region (DISOPRED)
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKRHGEGLAKYTA
Disordered Region (DISEMBL)
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKR**********
Disordered Region (DISPRO)
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKRHGEGLAKY**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQHEVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRRKRHGEGLAKYTA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q8L5K3	606	(R)-limonene synthase 1 O	N/A	no	0.837	0.169	0.639	1e-23
Q93X23	597	Myrcene synthase, chlorop	N/A	no	0.821	0.169	0.460	1e-18
Q6PWU2	590	(-)-alpha-terpineol synth	no	no	0.837	0.174	0.460	4e-18
Q9ZUH4	591	Tricyclene synthase, chlo	yes	no	0.821	0.170	0.468	4e-16
P0CJ43	589	(E)-beta-ocimene synthase	no	no	0.837	0.174	0.412	2e-14
P0DI77	600	1,8-cineole synthase 2, c	no	no	0.902	0.185	0.430	4e-14
P0DI76	600	1,8-cineole synthase 1, c	no	no	0.902	0.185	0.430	4e-14
A7IZZ2	615	(+)-alpha-pinene synthase	N/A	no	0.796	0.159	0.422	6e-14
Q9LRZ6	598	Beta-myrcene/(E)-beta-oci	no	no	0.796	0.163	0.439	7e-14
A4FVP2	565	Tricyclene synthase, chlo	no	no	0.796	0.173	0.432	2e-13

>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 81/111 (72%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           +GKVK    D  +PL QLELID LQ LGLA+ FE+EIRNIL NIYN NKD  W+KEN  +
Sbjct: 88  RGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVFNGFK+ +   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGILSLHEASYYSL 196

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0

>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 12/113 (10%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNK-DDKWKKENVR 61
           K +V+ + +    PL QLELI+ LQ LGL+YHFE EI+ IL  +YN +   D WK EN  
Sbjct: 92  KEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAEN-- 149

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKS---YLISDDFNGILSLYVASYY 105
           ++AT+L+F LLRQH      EVFN FK+ +      + +D  G+LSLY AS++
Sbjct: 150 LYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFF 202

Involved in monoterpene (C10) biosynthesis. The major product is myrcene followed by minor amounts (1.2%) of the cyclic monoterpene limonene.

Quercus ilex (taxid: 58334)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 12/115 (10%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNK-NKDDKWKKENVR 61
           K  VK +     KPL QLELID LQ LG+ YHF+ EI+ IL  IYN+ N+ ++W+K++  
Sbjct: 84  KRDVKPMLGKVKKPLDQLELIDVLQRLGIYYHFKDEIKRILNGIYNQYNRHEEWQKDD-- 141

Query: 62  VHATSLEFGLLRQH------EVFNGFK-ETKSY--LISDDFNGILSLYVASYYSL 107
           ++AT+LEF LLRQH      +VF+ FK +T S+   + +D  G+L LY ASY  +
Sbjct: 142 LYATALEFRLLRQHGYDVPQDVFSRFKDDTGSFKACLCEDMKGMLCLYEASYLCV 196

Mediates the conversion of geranyl diphosphate into alpha-terpineol, a monoterpenol. Monoterpenols contribute to the final grape and wine aroma and flavor. Also forms some 1,8-cineole and traces of other monoterpenoids.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 1

>sp|Q9ZUH4|TPSA_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 10/111 (9%)

Query: 3   KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K KV+ + ND  K  L QLE ID LQ LG++YHFE+EI NIL + Y K   D+   +   
Sbjct: 81  KEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKK---DRTNIQESD 137

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYS 106
           +HAT+LEF L RQH      +VF+ F E       DD  G++SLY ASY S
Sbjct: 138 LHATALEFRLFRQHGFNVSEDVFDVFMENCGKFDRDDIYGLISLYEASYLS 188

Involved in monoterpene (C10) biosynthesis. The major product is beta-myrcene (56%) followed by (E)-beta-ocimene (20%) and minor amounts (less than 5%) of the cyclic monoterpene (-)-limonene, (+)-limonene, 2-carene and tricyclene.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|P0CJ43|OCISB_ARATH (E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 11/114 (9%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           K +V+   N+    + QLE+ID+LQ LG++YH++ EI +ILR I++++ +   ++E   +
Sbjct: 78  KEEVRKTLNEIEGSIEQLEMIDSLQRLGISYHYKHEIHDILRKIHDQHGEI--ERETQDL 135

Query: 63  HATSLEFGLLRQH------EVFNGF-KETKSY--LISDDFNGILSLYVASYYSL 107
           HATSLEF LLRQH      + F+ F  ET  +   +  D  G+LSLY ASY+S+
Sbjct: 136 HATSLEFILLRQHGFDVSQDAFDVFISETGEFRKTLHSDIKGLLSLYEASYFSM 189

Predominantly involved in monoterpene (C10) biosynthesis. Using GPP as substrate, the major product is (E)-beta-ocimene with minor amounts of (Z)-beta-ocimene and myrcene. Using FPP as substrate, could also be able to synthesize in vitro sesquiterpenes (C15) with (E,E)-alpha-farnesene as the major product and with (Z,E)-alpha-farnesene and (E,E)-beta-farnesene as minor products.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 12/123 (9%)

Query: 3   KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K KVK++ +D  K  L QLELID LQ LG++YHFE EI + L +++ K   + WK +   
Sbjct: 82  KKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEE 141

Query: 62  -VHATSLEFGLLRQH---------EVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRR 111
            +HATSLEF LLRQH         +V     E+ ++  +++ NGI+SLY ASY S     
Sbjct: 142 DLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFK-TNNINGIISLYEASYLSTKSDT 200

Query: 112 KRH 114
           K H
Sbjct: 201 KLH 203

Involved in monoterpene (C10) biosynthesis. The major product is 1,8-cineole (52%) followed by minor amounts of sabinene (14.5%), myrcene (13.3%), (-)-(1S)-beta-pinene (7.8%), (-)-(4S)-limonene (4.0%), (E)-beta-ocimene (2.7%), alpha-terpineol (2.4%), (-)-(1S)-alpha-pinene (1.9%), terpinolene (0.8%), and (+)-alpha-thujene (0.6%).

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 0

EC: 8

>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 12/123 (9%)

Query: 3   KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K KVK++ +D  K  L QLELID LQ LG++YHFE EI + L +++ K   + WK +   
Sbjct: 82  KKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEE 141

Query: 62  -VHATSLEFGLLRQH---------EVFNGFKETKSYLISDDFNGILSLYVASYYSLIRRR 111
            +HATSLEF LLRQH         +V     E+ ++  +++ NGI+SLY ASY S     
Sbjct: 142 DLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFK-TNNINGIISLYEASYLSTKSDT 200

Query: 112 KRH 114
           K H
Sbjct: 201 KLH 203

Involved in monoterpene (C10) biosynthesis. The major product is 1,8-cineole (52%) followed by minor amounts of sabinene (14.5%), myrcene (13.3%), (-)-(1S)-beta-pinene (7.8%), (-)-(4S)-limonene (4.0%), (E)-beta-ocimene (2.7%), alpha-terpineol (2.4%), (-)-(1S)-alpha-pinene (1.9%), terpinolene (0.8%), and (+)-alpha-thujene (0.6%).

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 0

EC: 8

>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 18/116 (15%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIY---NKNKDDKWKKEN 59
           K +VK +       L QLELIDTLQ LG++YHFE+EI +IL+  +   + NK+ K+    
Sbjct: 106 KEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYD--- 162

Query: 60  VRVHATSLEFGLLRQH------EVFNGFKET----KSYLISDDFNGILSLYVASYY 105
             ++AT+LEF LLR++      E+FN FK+     K+ + +DD  G+L+LY AS+Y
Sbjct: 163 --LYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEASFY 216

Involved in monoterpene (C10) olefins biosynthesis. The major product is (+)-alpha-pinene.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 9/107 (8%)

Query: 17  LHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWK-KENVRVHATSLEFGLLRQH 75
           L +LELID LQ LG++YHFE EI NIL N + +N  + WK  +   +HAT+LEF LLRQH
Sbjct: 98  LEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQH 157

Query: 76  ------EVFNGF--KETKSYLISDDFNGILSLYVASYYSLIRRRKRH 114
                 ++F+    K   +   SD+   I++LY ASY S     K H
Sbjct: 158 GFGVSEDIFDVIIDKIESNTFKSDNITSIITLYEASYLSTKSDTKLH 204

Involved in monoterpene (C10) biosynthesis. The major products are alpha- and beta-pinene, sabinene, beta-myrcene, (E)-beta-ocimene and limonene.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 66/118 (55%), Gaps = 20/118 (16%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKN--------KDDK 54
           K +V  + N+    L QLELIDTLQ LG++YHFE EI+  L N++ KN          ++
Sbjct: 61  KQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNR 120

Query: 55  WKKENVRVHATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYS 106
           W      ++AT+LEF LLRQH      +VF+G       L   D  GILSLY ASY S
Sbjct: 121 WGD----LYATALEFRLLRQHGFSIAQDVFDG--NIGVDLDDKDIKGILSLYEASYLS 172

Predominantly involved in sesquiterpenes (C15) biosynthesis. Using FPP as substrate, the major product is (E,E)-alpha-farnesene with minor amounts of (Z,E)-alpha-farnesene and (E,E)-beta-farnesene. Using GPP as substrate, could also be able in vitro to synthesize monoterpene (C10) with (E)-beta-ocimene as the major product and with (Z)-beta-ocimene and myrcene as minor products.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
49659437	608	d-limonene synthase [Citrus unshiu]	0.837	0.169	0.684	3e-32
209446863	607	limonene synthase [Poncirus trifoliata]	0.837	0.169	0.684	1e-31
49659435	606	d-limonene synthase [Citrus unshiu]	0.837	0.169	0.639	1e-30
21435708	606	(+)-limonene synthase 2 [Citrus limon]	0.837	0.169	0.666	2e-30
322424201	607	limonene synthase [Murraya paniculata]	0.829	0.168	0.631	2e-27
41017756	606	RecName: Full=(R)-limonene synthase 1; A	0.837	0.169	0.639	5e-22
394556815	612	geraniol synthase [Citrus jambhiri]	0.837	0.168	0.639	2e-21
255562431	222	(R)-limonene synthase, putative [Ricinus	0.967	0.536	0.496	6e-20
359495034	596	PREDICTED: LOW QUALITY PROTEIN: myrcene	0.837	0.172	0.517	6e-20
225465905	590	PREDICTED: myrcene synthase, chloroplast	0.837	0.174	0.504	2e-19

>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 84/111 (75%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KGKVKT   D T+PL QLELID LQ LGLAYHFE EIRNILRNI+N NKD  W+KEN  +
Sbjct: 88  KGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVF+GFK+ K   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSL 196

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 82/111 (73%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KGKVKT   D T+PL QLELID LQ LGLAYHFE+EIRNIL NIYN NKD  W+KEN  +
Sbjct: 88  KGKVKTAIEDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNIYNNNKDYIWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EV  GFKE K   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVSTGFKEDKGVFICDDFMGILSLHEASYYSL 196

Source: Poncirus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 84/111 (75%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KGKV T   D T+PL+QLELID+LQ LGLAYHFE+EIRNIL +IYN N D  W+KEN  +
Sbjct: 88  KGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVFNGFK+ +   I DDF G+LSL+ ASY+SL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGVLSLHEASYFSL 196

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 82/111 (73%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KGKVK    D T+PL QLELID LQ LGLAY FE+EIRNIL NIYN NKD  W+KEN  +
Sbjct: 88  KGKVKIAIKDVTEPLDQLELIDNLQRLGLAYRFETEIRNILHNIYNNNKDYVWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVFNGFK+ +   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFIFDDFKGILSLHEASYYSL 196

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 12/114 (10%)

Query: 3   KGKVKTITNDAT---KPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKEN 59
           KGKVKT+ N+ +   KPL QLELID LQ LGLAYHFE+EI+NIL N+YN NK DKWKKEN
Sbjct: 89  KGKVKTVINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIKNILHNVYN-NKYDKWKKEN 147

Query: 60  VRVHATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
             ++ATSLEF LLRQH      EVF+ FK+     I +DF GILSLY A Y SL
Sbjct: 148 --LYATSLEFRLLRQHGYNVSQEVFSSFKDKNGGFICNDFKGILSLYEALYSSL 199

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 81/111 (72%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           +GKVK    D  +PL QLELID LQ LGLA+ FE+EIRNIL NIYN NKD  W+KEN  +
Sbjct: 88  RGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVFNGFK+ +   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGILSLHEASYYSL 196

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 80/111 (72%), Gaps = 8/111 (7%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KGKVK    D  +PL QLELID LQ LGLA+ FE+EIRNIL NIYN NKD  W+KEN  +
Sbjct: 88  KGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKEN--L 145

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYSL 107
           +ATSLEF LLRQH      EVFNG K+ +   I DDF GILSL+ ASYYSL
Sbjct: 146 YATSLEFRLLRQHGYPVSQEVFNGLKDGQGGFICDDFKGILSLHEASYYSL 196

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562431|ref|XP_002522222.1| (R)-limonene synthase, putative [Ricinus communis] gi|223538593|gb|EEF40197.1| (R)-limonene synthase, putative [Ricinus communis]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 82/137 (59%), Gaps = 18/137 (13%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDK-WKKENVR 61
           K  VKT+ N+A  PL QLELIDTLQ LGLAYHF+ EI  IL NIY +N+ +K W KE+  
Sbjct: 14  KKSVKTMLNEAVIPLDQLELIDTLQRLGLAYHFQDEINKILNNIYIQNRFEKTWTKED-- 71

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKS---YLISDDFNGILSLYVASYYS------ 106
           +HAT+L+F LLRQH      E+FN F +        I +D  G+LSLY ASY S      
Sbjct: 72  LHATALQFRLLRQHGYNISQEIFNIFLDDLGNFKACIGEDLKGLLSLYEASYLSEEGENI 131

Query: 107 LIRRRKRHGEGLAKYTA 123
           L   RK     L KYT 
Sbjct: 132 LEVARKFATICLQKYTT 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495034|ref|XP_003634902.1| PREDICTED: LOW QUALITY PROTEIN: myrcene synthase, chloroplastic-like [Vitis vinifera]

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 74/114 (64%), Gaps = 11/114 (9%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
           KG VK +  +A KPLHQLELIDTLQ LG+ YHF  EI+ IL  IYN N++D WK  N  +
Sbjct: 89  KGDVKMMLGEAEKPLHQLELIDTLQRLGIHYHFGEEIKRILHGIYNYNRNDTWK--NGDL 146

Query: 63  HATSLEFGLLRQH------EVFNGFKE---TKSYLISDDFNGILSLYVASYYSL 107
           +AT+LEF LLRQH      +VF+ F     T    +++D  GIL LY ASY S+
Sbjct: 147 YATALEFRLLRQHGYHVPQDVFHIFINKMGTVKPWLNEDIKGILCLYEASYLSV 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465905|ref|XP_002266808.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 12/115 (10%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIY-NKNKDDKWKKENVR 61
           K +VK +     KPL QLELID LQ LG++Y FE EI+ +L +IY N N DDKWKKEN  
Sbjct: 87  KREVKMMLGKVEKPLDQLELIDLLQRLGISYQFEDEIKRLLNSIYCNHNIDDKWKKEN-- 144

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYSL 107
           +HAT+LEF +LRQ+      +VF+ FK+        +S+D  GIL LY ASY S+
Sbjct: 145 LHATALEFRILRQNGYSIPQDVFSSFKDEMGGFKACLSEDIQGILCLYEASYLSI 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:2047510	591	TPS10 "terpene synthase 10" [A	0.821	0.170	0.450	2e-14
TAIR|locus:2829283	600	TPS-CIN ""terpene synthase-lik	0.910	0.186	0.434	1.8e-12
TAIR|locus:2086014	600	TPS-CIN ""terpene synthase-lik	0.910	0.186	0.434	1.8e-12
UNIPROTKB|J7LH11	546	J7LH11 "(+)-epi-alpha-bisabolo	0.829	0.186	0.396	1.9e-12
TAIR|locus:2129101	565	TPS03 "terpene synthase 03" [A	0.829	0.180	0.429	4.3e-12
TAIR|locus:2086004	598	AT3G25810 [Arabidopsis thalian	0.910	0.187	0.406	4.8e-12
UNIPROTKB|J7LQ09	542	J7LQ09 "Trans-alpha-bergamoten	0.845	0.191	0.380	6.7e-12
UNIPROTKB|Q9SPN0	567	QH1 "R-linalool synthase QH1,	0.837	0.181	0.385	3.2e-11
UNIPROTKB|Q9SPN1	583	QH5 "R-linalool synthase QH5,	0.837	0.176	0.394	7e-11
UNIPROTKB|Q50L36	595	ISPS "Isoprene synthase, chlor	0.804	0.166	0.390	9.3e-11

TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 50/111 (45%), Positives = 63/111 (56%)

Query:     3 KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVR 61
             K KV+ + ND  K  L QLE ID LQ LG++YHFE+EI NIL + Y          +   
Sbjct:    81 KEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESD--- 137

Query:    62 VHATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYS 106
             +HAT+LEF L RQH      +VF+ F E       DD  G++SLY ASY S
Sbjct:   138 LHATALEFRLFRQHGFNVSEDVFDVFMENCGKFDRDDIYGLISLYEASYLS 188

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 53/122 (43%), Positives = 68/122 (55%)

Query:     3 KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVR 61
             K KVK++ +D  K  L QLELID LQ LG++YHFE EI + L +++          +   
Sbjct:    82 KKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEE 141

Query:    62 -VHATSLEFGLLRQH--EVF-NGFKETKSYLISDDF-----NGILSLYVASYYSLIRRRK 112
              +HATSLEF LLRQH  +V  N F      + S+ F     NGI+SLY ASY S     K
Sbjct:   142 DLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFKTNNINGIISLYEASYLSTKSDTK 201

Query:   113 RH 114
              H
Sbjct:   202 LH 203

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 53/122 (43%), Positives = 68/122 (55%)

Query:     3 KGKVKTITNDATKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVR 61
             K KVK++ +D  K  L QLELID LQ LG++YHFE EI + L +++          +   
Sbjct:    82 KKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEE 141

Query:    62 -VHATSLEFGLLRQH--EVF-NGFKETKSYLISDDF-----NGILSLYVASYYSLIRRRK 112
              +HATSLEF LLRQH  +V  N F      + S+ F     NGI+SLY ASY S     K
Sbjct:   142 DLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFKTNNINGIISLYEASYLSTKSDTK 201

Query:   113 RH 114
              H
Sbjct:   202 LH 203

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=ISS;IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)]

 Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 44/111 (39%), Positives = 59/111 (53%)

Query:     3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRV 62
             K +V+ +    + PL  +EL+D LQ L ++YHF   I   L+NIY              +
Sbjct:    41 KDEVRMLLEKTSDPLDHIELVDVLQRLAISYHFTEYIDRNLKNIYDILIDGRRWNHADNL 100

Query:    63 HATSLEFGLLRQH------EVFNGFK-ETKSYL--ISDDFNGILSLYVASY 104
             HAT+L F LLRQH      EVF  F  ET ++   + DD  G+LSLY ASY
Sbjct:   101 HATTLSFRLLRQHGYQVSPEVFRNFMDETGNFKKNLCDDIKGLLSLYEASY 151

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901943 "(+)-epi-alpha-bisabolol biosynthetic process" evidence=IDA

TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 49/114 (42%), Positives = 63/114 (55%)

Query:     3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXX-ENVR 61
             K +V  + N+    L QLELIDTLQ LG++YHFE EI+  L N++           +  R
Sbjct:    61 KQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNR 120

Query:    62 ---VHATSLEFGLLRQH------EVFNGFKETKSYLISDDFNGILSLYVASYYS 106
                ++AT+LEF LLRQH      +VF+G       L   D  GILSLY ASY S
Sbjct:   121 WGDLYATALEFRLLRQHGFSIAQDVFDG--NIGVDLDDKDIKGILSLYEASYLS 172

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009625 "response to insect" evidence=IEP

GO:0016106 "sesquiterpenoid biosynthetic process" evidence=IMP

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0052578 "alpha-farnesene synthase activity" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 50/123 (40%), Positives = 66/123 (53%)

Query:     3 KGKVKTITNDA-TKP-LHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENV 60
             K KVK +  +  TK  L +LELID LQ LG++YHFE EI NIL N +          +  
Sbjct:    82 KKKVKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKE 141

Query:    61 R-VHATSLEFGLLRQH------EVFNGF--KETKSYLISDDFNGILSLYVASYYSLIRRR 111
               +HAT+LEF LLRQH      ++F+    K   +   SD+   I++LY ASY S     
Sbjct:   142 EDLHATALEFRLLRQHGFGVSEDIFDVIIDKIESNTFKSDNITSIITLYEASYLSTKSDT 201

Query:   112 KRH 114
             K H
Sbjct:   202 KLH 204

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0034002 "(R)-limonene synthase activity" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

GO:0050550 "pinene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0050552 "(4S)-limonene synthase activity" evidence=IDA

GO:0080015 "sabinene synthase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)]

 Score = 170 (64.9 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 43/113 (38%), Positives = 65/113 (57%)

Query:     3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVR- 61
             K +VK I  +  + L QL+LID +Q LG+++HF  EI+ +L+NIY            +  
Sbjct:    39 KWQVKVIIKETKQRLDQLDLIDNIQRLGISHHFRDEIQRVLQNIYEKMRVECPDRMLMEK 98

Query:    62 -VHATSLEFGLLRQH------EVFNGFKE-TKSYLISDDFNGILSLYVASYYS 106
              +++TSL+F LLRQH      +VF  F +   ++   DD  GIL+LY AS+ S
Sbjct:    99 DLYSTSLQFRLLRQHGYHVSQDVFCSFMDGAGNFQAVDDLKGILALYEASFLS 151

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA

UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)]

 Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 44/114 (38%), Positives = 61/114 (53%)

Query:     3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRV 62
             K  VKT+   +   L  LEL+D LQ LG++Y FE EI N+L  IY            + +
Sbjct:    64 KDAVKTMIRKSGNSLRTLELVDELQRLGISYLFEEEISNLLETIYYNYYKFPENWNKINL 123

Query:    63 HATSLEFGLLRQH------EVFNGFKETK----SYLISDDFNGILSLYVASYYS 106
             +  +L F LLRQH      E+F  FK+      SYL++D    +L+LY ASY+S
Sbjct:   124 NLKALGFRLLRQHGYHVPQEIFLNFKDKNQNLNSYLLNDVVE-MLNLYEASYHS 176

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)]

 Score = 161 (61.7 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 45/114 (39%), Positives = 60/114 (52%)

Query:     3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRV 62
             K  VKT+       L  LEL+D LQ LG++Y FE EI N+L  IY              +
Sbjct:    80 KESVKTMIRKEGNLLRTLELVDELQRLGISYLFEGEISNLLETIYYNHYKFPEKWNKFDL 139

Query:    63 HATSLEFGLLRQH------EVFNGFKETK----SYLISDDFNGILSLYVASYYS 106
             +  +L F LLRQH      E+F  FK+      SYL+ +D  G+L+LY ASY+S
Sbjct:   140 NLKALGFRLLRQHGYHVPQEIFLNFKDKNQNLNSYLL-EDVVGMLNLYEASYHS 192

GO:0009611 "response to wounding" evidence=IEP

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)]

 Score = 160 (61.4 bits), Expect = 9.3e-11, P = 9.3e-11
 Identities = 43/110 (39%), Positives = 59/110 (53%)

Query:     7 KTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATS 66
             + I N+  + L  LELID +Q LGL Y FES+IR  L               ++  H T+
Sbjct:    95 REINNEKAEFLTLLELIDNVQRLGLGYRFESDIRGALDRFVSSGGFDAVTKTSL--HGTA 152

Query:    67 LEFGLLRQH------EVFNGFKETK-SYL--ISDDFNGILSLYVASYYSL 107
             L F LLRQH      E F+GFK+   ++L  + +D   ILSLY AS+ +L
Sbjct:   153 LSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDIKAILSLYEASFLAL 202

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0034009 "isoprene synthase activity" evidence=IDA

GO:0043612 "isoprene biosynthetic process" evidence=IDA

GO:0050993 "dimethylallyl diphosphate metabolic process" evidence=IDA

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0071485 "cellular response to absence of light" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030956001 SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (590 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	8e-31
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	2e-22
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	3e-04

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  107 bits (270), Expect = 8e-31
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 18/124 (14%)

Query: 3   KGKVKT-ITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K +V+  + +     L QLELID LQ LG++YHFE EI+ IL  IY    D+  ++++  
Sbjct: 27  KEEVRKMLPSSYPDLLEQLELIDALQRLGISYHFEKEIKEILDQIYRNWDDNDEEEDD-- 84

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYSLIRRRK 112
           ++ T+L F LLRQH      +VFN FK+        +++D  G+LSLY AS+        
Sbjct: 85  LYTTALAFRLLRQHGYDVSSDVFNKFKDEDGKFKESLTNDVKGLLSLYEASHLR------ 138

Query: 113 RHGE 116
            HGE
Sbjct: 139 THGE 142

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 10/106 (9%)

Query: 10  TNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEF 69
           +        +L LID LQ LG++YHFE EI+ IL  IY     ++ +     ++ T+L F
Sbjct: 47  SEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYW-TERGESNEDDLYTTALGF 105

Query: 70  GLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYS 106
            LLRQH      +VF  FK+        ++ D  G+LSLY AS+ S
Sbjct: 106 RLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS 151

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 23  IDTLQGLGLAYHFESEIRNILRNIYNKNKDDK--WKKENVRVH---ATSLEFGLLRQH-- 75
           +D LQ LG++ +FE EI+  +  ++    ++   W + N  VH    T++ F LLR H  
Sbjct: 317 VDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGH 375

Query: 76  ----EVFNGFKETKSYLI-----SDDFNGILSLYVAS 103
               +VF  F++   +       +    G+ +LY AS
Sbjct: 376 QVSADVFKHFEKGGEFFCFAGQSTQAVTGMFNLYRAS 412

Length = 800

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	99.96
PLN02592	800	ent-copalyl diphosphate synthase	99.94

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=1.5e-43  Score=271.63  Aligned_cols=112  Identities=45%  Similarity=0.660  Sum_probs=98.5

Q ss_pred             cHHHHHHHHhhcC-CccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDAT-KPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~~-~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||++||.|+.... +++++|+|||+||||||+|||++||+++|+++|+.|.....  ...|||+|||+|||||||     
T Consensus        31 Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~--~~~dL~~~AL~FRLLRqhGy~VS  108 (183)
T PF01397_consen   31 LKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNE--EIDDLYTTALRFRLLRQHGYYVS  108 (183)
T ss_dssp             HHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSH--TSSCHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhcccccc--ccCchhHHHHHHHHHHHcCCccc
Confidence            7999999998764 79999999999999999999999999999999999876431  235999999999999999     


Q ss_pred             -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+    +.++ ++|++||||||||||+++|||.+|.+.
T Consensus       109 ~DvF~~F~d~~g~F~~~l-~~Dv~glLsLYeAS~l~~~gE~iLdeA  153 (183)
T PF01397_consen  109 SDVFNKFKDEKGNFKESL-SNDVKGLLSLYEASHLRFHGEDILDEA  153 (183)
T ss_dssp             GGGGGGGBETTSSBSGGG-GGHHHHHHHHHHHHTT--TT-HHHHHH
T ss_pred             HHHHhCcccCCCccchhh-hHhHHHHHHHHHHHHccCCChHHHHHH
Confidence             999999998    4566 789999999999999999999988764

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=1.3e-38  Score=274.72  Aligned_cols=113  Identities=39%  Similarity=0.566  Sum_probs=100.4

Q ss_pred             cHHHHHHHHhh---cCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc---
Q 038158            2 QKGKVKTITND---ATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH---   75 (123)
Q Consensus         2 lkeeVr~ml~~---~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh---   75 (123)
                      ||++||+|+..   ..|++++|++||+||||||+|||++||+++|+++|+.|...+. ....|||+|||+|||||||   
T Consensus        36 lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~-~~~~dl~~~al~FRlLR~~Gy~  114 (542)
T cd00684          36 LKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGE-SNEDDLYTTALGFRLLRQHGYN  114 (542)
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhccccc-ccCCCHHHHHHHHHHHHHcCCC
Confidence            79999999986   5689999999999999999999999999999999998864321 2347999999999999999   


Q ss_pred             ---ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 ---EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 ---DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                         |||++|+|+    +.++ .+|++||||||||||+++|||.+|.+.
T Consensus       115 vs~dvf~~F~~~~g~f~~~~-~~d~~g~l~Ly~As~l~~~gE~iLdeA  161 (542)
T cd00684         115 VSSDVFKKFKDEDGKFKESL-TQDVKGMLSLYEASHLSFPGEDILDEA  161 (542)
T ss_pred             cCHHHHhhhcCCCCCcCchh-hhhhHHHHHHHHHhhcCCCCcHHHHHH
Confidence               999999988    4455 679999999999999999999998654

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=99.96  E-value=1.9e-29  Score=226.36  Aligned_cols=102  Identities=25%  Similarity=0.357  Sum_probs=88.7

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc------ccccccccC--C
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH------EVFNGFKET--K   85 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh------DvF~~F~d~--~   85 (123)
                      .++++++++||+||||||+|||++||+++|+.+|+.|..... ....|+++|||+|||||||      |||++|+|+  +
T Consensus       268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~-~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~F~  346 (784)
T PLN02279        268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEE-EIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDHFS  346 (784)
T ss_pred             ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCccc
Confidence            578999999999999999999999999999999998864321 2357999999999999999      999999987  3


Q ss_pred             cccc--cCchHHHHHHHHhhccccccccccccc
Q 038158           86 SYLI--SDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        86 ~~l~--~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      .++.  .+|++||||||||||+++|||.+|.+.
T Consensus       347 ~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA  379 (784)
T PLN02279        347 DSLGGYLKDTGAVLELFRASQISYPDESLLEKQ  379 (784)
T ss_pred             chhcccchhhHHHHHHHHHHhcCCCccHHHHHH
Confidence            3320  389999999999999999999998754

>PLN02592 ent-copalyl diphosphate synthase

Probab=99.94  E-value=4.3e-28  Score=217.89  Aligned_cols=102  Identities=23%  Similarity=0.339  Sum_probs=87.7

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc----cCCchhhhhHHhhhhhhc------cccccccc
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK----ENVRVHATSLEFGLLRQH------EVFNGFKE   83 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~----~~~dL~~~AL~FRLLRqh------DvF~~F~d   83 (123)
                      .+++++|++||+||||||+|||++||+++|+.+|+.|...+.++    ...|+++|||+|||||||      |||++|++
T Consensus       308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~  387 (800)
T PLN02592        308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK  387 (800)
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence            57899999999999999999999999999999999876532211    247999999999999999      99999987


Q ss_pred             C------CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           84 T------KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        84 ~------~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      +      .+.. .+|++|||+||||||+++|||.+|.+.
T Consensus       388 ~g~F~~~~ge~-~~Dv~glL~LYeAS~l~~~gE~iLdeA  425 (800)
T PLN02592        388 GGEFFCFAGQS-TQAVTGMFNLYRASQVLFPGEKILENA  425 (800)
T ss_pred             CCCcccccccc-ccchHHHHHHHHHHhcCCCcchHHHHH
Confidence            5      2223 589999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		1e-11
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		7e-11
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		6e-10
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		4e-09
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		4e-09
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		3e-08
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		3e-08
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		3e-08
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		4e-08
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		4e-08
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		4e-08
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-08
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		3e-07
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		3e-07

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 6   VKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXX--XXENVRVH 63
           VK      T  + QLELID LQ +GL+ HF++E + IL +IY            E   ++
Sbjct: 40  VKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLY 99
Query: 64  ATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
           +TSL F LLR+H      EVF+ FK  +      +SDD  G+L LY AS+
Sbjct: 100 STSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASF 149

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 7   KTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATS 66
           + I N+  + L  LELID +Q LGL Y FES+IR  L                  +HAT+
Sbjct: 55  REINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVT--KTSLHATA 112
Query: 67  LEFGLLRQH------EVFNGFKETKSYLIS---DDFNGILSLYVASYYSL 107
           L F LLRQH      E F+GFK+     +    +D   ILSLY AS+ +L
Sbjct: 113 LSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLAL 162

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 7   KTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATS 66
           K I         +L  ID++Q LG++YHF  EI + L NIY          EN  ++ TS
Sbjct: 61  KMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY----HNNNDAEN-DLYTTS 115
Query: 67  LEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYSLIRRRKRHGEG 117
           + F LLR+H      +VFN FK+ +      ++ D  G+L LY ASY  +      HGE 
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRV------HGED 169
Query: 118 L 118
           +
Sbjct: 170 I 170

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 5   KVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHA 64
           +VK +  +    + +LELID L+ LG++ HFE EI  IL + Y          +   +++
Sbjct: 72  QVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKY----YTNNEIDERDLYS 127
Query: 65  TSLEFGLLRQH------EVFNGFKETKSY----LISDDFNGILSLYVASYYS 106
           T+L F LLRQ+      EVF+ FK  K       + DD  G+L LY AS+ S
Sbjct: 128 TALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLS 179

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 5   KVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYXX-XXXXXXXXENVRVH 63
           +V+ +  +  +P+ QLELI  L+ LGL+  F+ EI+ IL  IY           E + ++
Sbjct: 43  QVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLY 102
Query: 64  ATSLEFGLLRQH------EVFNGFKETKSY----LISDDFNGILSLYVASYYSLIRR 110
            T+L F LLRQH      +VFN FK  K       ++ D  G+L LY AS+  L+R+
Sbjct: 103 FTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASF--LLRK 157

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 70  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 123
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 124 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 70  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 123
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 124 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 55  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 108
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 109 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 142

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LIDT++ LG++YHFE EI +IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LID ++ LG++YHFE EI  IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 20  LELIDTLQGLGLAYHFESEIRNILRNIYXXXXXXXXXXENVRVHATSLEFGLLRQH---- 75
           L LID ++ LG++YHFE EI  IL  IY              +  ++L+F LLRQH    
Sbjct: 68  LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCND------LCTSALQFRLLRQHGFNI 121
Query: 76  --EVFNGFKETKSYL---ISDDFNGILSLYVASY 104
             E+F+ F++        ++ D  G+L+LY AS+
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	1e-20
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	2e-20
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	5e-19
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	3e-17
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	3e-17
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	6e-15
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	9e-15
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	1e-14
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	6e-14
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	7e-14

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score = 84.8 bits (209), Expect = 1e-20
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 1   MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKN--KDDKWKKE 58
                VK      T  + QLELID LQ +GL+ HF++E + IL +IY  +    + + KE
Sbjct: 35  ELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKE 94

Query: 59  NVRVHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYY 105
              +++TSL F LLR+H      EVF+ FK  +      +SDD  G+L LY AS+ 
Sbjct: 95  ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFL 150

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score = 84.1 bits (207), Expect = 2e-20
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 11/116 (9%)

Query: 1   MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENV 60
               +V+ +  +  +P+ QLELI  L+ LGL+  F+ EI+ IL  IYN++K     +   
Sbjct: 39  ELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEK 98

Query: 61  R-VHATSLEFGLLRQH------EVFNGFKETKSYL----ISDDFNGILSLYVASYY 105
             ++ T+L F LLRQH      +VFN FK  K       ++ D  G+L LY AS+ 
Sbjct: 99  MDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFL 154

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score = 80.2 bits (197), Expect = 5e-19
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 14/113 (12%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRV 62
             +VK +  +    + +LELID L+ LG++ HFE EI  IL + Y  N +    + +  +
Sbjct: 70  IDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNE--IDERD--L 125

Query: 63  HATSLEFGLLRQH------EVFNGFKETKSYL----ISDDFNGILSLYVASYY 105
           ++T+L F LLRQ+      EVF+ FK  K       + DD  G+L LY AS+ 
Sbjct: 126 YSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFL 178

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 16/113 (14%)

Query: 3   KGKVKTITNDATK-PLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K + + +           L LIDT++ LG++YHFE EI +IL  IYN+N +         
Sbjct: 52  KEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN------D 105

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYY 105
           +  ++L+F LLRQH      E+F+ F++        ++ D  G+L+LY AS+ 
Sbjct: 106 LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 7   KTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATS 66
           + I N+  + L  LELID +Q LGL Y FES+IR  L    +    D   K +  +HAT+
Sbjct: 55  REINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTS--LHATA 112

Query: 67  LEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYSL 107
           L F LLRQH      E F+GFK+        + +D   ILSLY AS+ +L
Sbjct: 113 LSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLAL 162

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score = 68.7 bits (167), Expect = 6e-15
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 15/113 (13%)

Query: 3   KGKVKTITNDATK-PLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K +V+ +          +L  ID++Q LG++YHF  EI + L NIY+ N +D        
Sbjct: 56  KEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYH-NNNDAEND---- 110

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYY 105
           ++ TS+ F LLR+H      +VFN FK+ +      ++ D  G+L LY ASY 
Sbjct: 111 LYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYL 163

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score = 68.3 bits (166), Expect = 9e-15
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 16/108 (14%)

Query: 14  TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWK----KENVRVHATSLEF 69
              L +L L+D ++ LG+  HF+ EI+  L  +Y    +             ++ T+L  
Sbjct: 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGL 303

Query: 70  GLLRQH------EVFNGFKETKSY------LISDDFNGILSLYVASYY 105
             LR H      +V N FK+              +   +++L+ AS  
Sbjct: 304 RTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDL 351

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYN--KNKDDKWKKENV 60
            G V  +          + ++D LQ LG++ +FE EI+  L  ++    +    W + + 
Sbjct: 234 NGGVPNVFPV--DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSH 291

Query: 61  R--VHATSLEFGLLRQH------EVFNGFKETKSYL-----ISDDFNGILSLYVASYY 105
              +  T++ F LLRQH      +VF  F++   +       +    G+ +LY AS  
Sbjct: 292 VQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQL 349

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 65.7 bits (159), Expect = 6e-14
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 14  TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYN--KNKDDKWKKENVR--VHATSLEF 69
              L +L ++D +  LG+  HFE EI+  L  +Y     +   W + N    +  T+L F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355

Query: 70  GLLRQH------EVFNGFKETKSYL------ISDDFNGILSLYVASYYS 106
            LLR H       +F+ FK+            + D   +L+LY AS  +
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLA 404

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score = 65.6 bits (159), Expect = 7e-14
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 16/121 (13%)

Query: 1   MQKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYN--KNKDDKWKKE 58
           ++K       +       +L  +DT++ LG+  HF+ EI+  L  +Y+    +   W +E
Sbjct: 255 LKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARE 314

Query: 59  NVR--VHATSLEFGLLRQH------EVFNGFKETKSYLIS------DDFNGILSLYVASY 104
           N    +  T++   +LR H      +V   F++                  +L++   S+
Sbjct: 315 NPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSH 374

Query: 105 Y 105
            
Sbjct: 375 V 375

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	99.97
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	99.97
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	99.96
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	99.96

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=9.4e-39  Score=274.97  Aligned_cols=113  Identities=40%  Similarity=0.556  Sum_probs=100.7

Q ss_pred             cHHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc--c-CCchhhhhHHhhhhhhc---
Q 038158            2 QKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK--E-NVRVHATSLEFGLLRQH---   75 (123)
Q Consensus         2 lkeeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~--~-~~dL~~~AL~FRLLRqh---   75 (123)
                      ||++||+|+.++.+++++|+|||+||||||+|||++||+++|+++|+.|.+.. ++  . ..|||+|||+|||||||   
T Consensus        36 Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-~~~~~~~~dl~~~al~FRlLR~hGy~  114 (543)
T 2ong_A           36 LVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYK-NPFPKEERDLYSTSLAFRLLREHGFQ  114 (543)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCC-SSCCCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccc-cccccccCCHHHHHHHHHHHHHcCCC
Confidence            79999999988779999999999999999999999999999999999875421 11  1 36999999999999999   


Q ss_pred             ---ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 ---EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 ---DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                         |||++|||+    +.++ ++|++|||||||||||++|||.+|.+.
T Consensus       115 vs~dvf~~Fk~~~g~F~~~l-~~d~~glL~Ly~As~l~~~gE~iL~eA  161 (543)
T 2ong_A          115 VAQEVFDSFKNEEGEFKESL-SDDTRGLLQLYEASFLLTEGETTLESA  161 (543)
T ss_dssp             CCGGGGGGGBCTTSSBCTTG-GGCHHHHHHHHHHHTTCCSSCHHHHHH
T ss_pred             ccHHHHhcccCCCCCccchh-hhccHHHHHHHHHHHcCCCChHHHHHH
Confidence               999999987    4555 789999999999999999999999764

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=2.4e-38  Score=273.63  Aligned_cols=108  Identities=37%  Similarity=0.587  Sum_probs=99.6

Q ss_pred             cHHHHHHHHhh-cCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITND-ATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~-~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||+|||+||.+ ..++.++|+|||+||||||+|||++||+++|+++|+.|..      ..|||+|||+|||||||     
T Consensus        51 Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~------~~dl~~~al~FRLLR~hGy~VS  124 (550)
T 3m00_A           51 LKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN------CNDLCTSALQFRLLRQHGFNIS  124 (550)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC------CSSHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc------CCCHHHHHHHHHHHHhcCCCCC
Confidence            79999999975 5789999999999999999999999999999999998854      37999999999999999     


Q ss_pred             -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+    ++++ ++|++||||||||||+++|||.+|.+.
T Consensus       125 ~dvf~~F~~~~G~F~~~l-~~d~~glL~LYeAs~l~~~gE~iLdeA  169 (550)
T 3m00_A          125 PEIFSKFQDENGKFKESL-ASDVLGLLNLYEASHVRTHADDILEDA  169 (550)
T ss_dssp             GGGGGGGBCTTSCBCGGG-GGCHHHHHHHHHHHTTCCTTCGGGTTH
T ss_pred             hHHhhhccccCCCccccc-hhchHHHHHHHHHHhcCCCCcHHHHHH
Confidence             999999976    5667 799999999999999999999998764

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=3.4e-38  Score=272.88  Aligned_cols=112  Identities=39%  Similarity=0.556  Sum_probs=98.2

Q ss_pred             cHHHHHHHHhhcC-CccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDAT-KPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~~-~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||+|||+||.+.. +++++|+|||+||||||+|||++||+++|+++|+..  ...++...|||+|||+|||||||     
T Consensus        49 Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~--~~~~~~~~DL~~~Al~FRLLR~hGy~VS  126 (555)
T 3n0f_A           49 LEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSG--GFDGVTKTSLHATALSFRLLRQHGFEVS  126 (555)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTC--HHHHHTTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhc--cccccccCCHHHHHHHHHHHHhcCCCcC
Confidence            7999999997666 899999999999999999999999999999999741  00012247999999999999999     


Q ss_pred             -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+    ++++ ++|++||||||||||+++|||.+|.+.
T Consensus       127 ~dvF~~F~d~~G~F~~~l-~~dv~glL~LYeAs~l~~~gE~iLdeA  171 (555)
T 3n0f_A          127 QEAFSGFKDQNGNFLENL-KEDTKAILSLYEASFLALEGENILDEA  171 (555)
T ss_dssp             GGGGGGGBCTTSCBCGGG-GGCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             hHHHhcccccCccchhhh-hhhhHHHHHHHHHHhcccCCcHHHHHH
Confidence             999999976    5667 899999999999999999999988754

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=8.7e-38  Score=270.56  Aligned_cols=110  Identities=37%  Similarity=0.554  Sum_probs=98.9

Q ss_pred             cHHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHHHHHHHHHH-hhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIY-NKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~-~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||++||+|+.+..+++++|+|||+||||||+|||++||+++|+++| +.+.+     ...|||+|||+|||||||     
T Consensus        69 Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~-----~~~Dl~~~al~FRlLR~hGy~Vs  143 (569)
T 2j5c_A           69 MIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI-----DERDLYSTALRFRLLRQYDFSVS  143 (569)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS-----CTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc-----ccCChhhhhHHhHHHHhcCCCcC
Confidence            7999999998877999999999999999999999999999999999 76432     246999999999999999     


Q ss_pred             -ccccccccCCc-ccc---cCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKETKS-YLI---SDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~~~-~l~---~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|++| .+.   ++|++|||||||||||++|||.+|.+.
T Consensus       144 ~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA  189 (569)
T 2j5c_A          144 QEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLA  189 (569)
T ss_dssp             GGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             HHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHH
Confidence             99999998755 331   689999999999999999999999764

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=6.3e-38  Score=270.38  Aligned_cols=115  Identities=37%  Similarity=0.501  Sum_probs=99.5

Q ss_pred             cHHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcc-cccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKW-KKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~-~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||++||+|+.+..+++++|+|||+||||||+|||++||+++|+++|+.+..... .....|||+|||+|||||||     
T Consensus        40 Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs  119 (549)
T 1n1b_A           40 LIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS  119 (549)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcC
Confidence            799999999877799999999999999999999999999999999987532100 01136999999999999999     


Q ss_pred             -ccccccccCCc-ccc---cCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKETKS-YLI---SDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~~~-~l~---~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|++| .+.   ++|++||||||||||+++|||.+|.+.
T Consensus       120 ~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA  165 (549)
T 1n1b_A          120 QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELA  165 (549)
T ss_dssp             GGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             HHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHH
Confidence             99999998755 331   689999999999999999999998764

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=1.3e-37  Score=269.34  Aligned_cols=109  Identities=36%  Similarity=0.615  Sum_probs=97.5

Q ss_pred             cHHHHHHHHhh-cCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITND-ATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~-~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||+|||+||.+ ..++.++|+|||+||||||+|||++||+++|+++|+. . .   ....|||+|||+|||||||     
T Consensus        55 Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~-~---~~~~dl~~~al~FRlLR~hGy~VS  129 (554)
T 3g4d_A           55 LKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-N-N---DAENDLYTTSIRFRLLREHGYNVS  129 (554)
T ss_dssp             HHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-C-C---CTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-c-C---CCCCCHHHHHHHHHHHHhcCCCCC
Confidence            79999999976 5799999999999999999999999999999999986 2 1   1136999999999999999     


Q ss_pred             -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+    ++++ ++|++||||||||||+++|||.+|.+.
T Consensus       130 ~dvf~~F~~~~g~F~~~l-~~d~~glL~LYeAs~l~~~gE~iLdeA  174 (554)
T 3g4d_A          130 CDVFNKFKDEQGNFKSSV-TSDVRGLLELYQASYLRVHGEDILDEA  174 (554)
T ss_dssp             GGGGGGGBCTTSSBCHHH-HHCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             hhHHhhhcccCCCccccc-ccchHHHHHHHHHHhCCCCCcHHHHHH
Confidence             999999987    4556 689999999999999999999988754

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=99.97  E-value=2.8e-31  Score=237.72  Aligned_cols=103  Identities=28%  Similarity=0.460  Sum_probs=87.7

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc----cCCchhhhhHHhhhhhhc------cccccccc
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK----ENVRVHATSLEFGLLRQH------EVFNGFKE   83 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~----~~~dL~~~AL~FRLLRqh------DvF~~F~d   83 (123)
                      .+++++|++||+||||||+|||++||+++|+++|+.|.+++.++    ...||++|||+|||||||      |||++|+|
T Consensus       296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  375 (817)
T 3sdr_A          296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKD  375 (817)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhh
Confidence            47799999999999999999999999999999999886532211    236999999999999999      99999997


Q ss_pred             CCcccc------cCchHHHHHHHHhhccccccccccccc
Q 038158           84 TKSYLI------SDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        84 ~~~~l~------~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      +++.+.      .+|++||||||||||+++|||.+|.+.
T Consensus       376 ~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA  414 (817)
T 3sdr_A          376 ANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEA  414 (817)
T ss_dssp             C--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             cCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHH
Confidence            744331      479999999999999999999988754

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=99.97  E-value=5.1e-31  Score=234.69  Aligned_cols=102  Identities=25%  Similarity=0.412  Sum_probs=88.6

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc----cCCchhhhhHHhhhhhhc------cccccccc
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK----ENVRVHATSLEFGLLRQH------EVFNGFKE   83 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~----~~~dL~~~AL~FRLLRqh------DvF~~F~d   83 (123)
                      .+++++|++||+||||||+|||++||+++|+++|+.|.+++.++    ...||++|||+|||||||      |||++|+|
T Consensus       244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  323 (764)
T 3p5p_A          244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKD  323 (764)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhc
Confidence            47799999999999999999999999999999999886532211    136999999999999999      99999997


Q ss_pred             CCc-------ccccCchHHHHHHHHhhccccccccccccc
Q 038158           84 TKS-------YLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        84 ~~~-------~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      +++       ++ .+|++||||||||||+++|||.+|.+.
T Consensus       324 ~~g~F~~~~~~~-~~dv~gmL~LYeAS~l~~~gE~iLdeA  362 (764)
T 3p5p_A          324 ENGRFFSSAGQT-HVELRSVVNLFRASDLAFPDERAMDDA  362 (764)
T ss_dssp             TTSCBCSCTTCS-CCCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             CCCCcccccccc-ccccHHHHHHHHHHhCCCCCcHHHHHH
Confidence            633       34 689999999999999999999988754

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=99.96  E-value=8.6e-31  Score=233.77  Aligned_cols=103  Identities=19%  Similarity=0.324  Sum_probs=88.5

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc----cCCchhhhhHHhhhhhhc------cccccccc
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK----ENVRVHATSLEFGLLRQH------EVFNGFKE   83 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~----~~~dL~~~AL~FRLLRqh------DvF~~F~d   83 (123)
                      .+++++|++||+||||||+|||++||+++|+++|+.|.+++.++    ...||++|||+|||||||      |||++|+|
T Consensus       268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  347 (785)
T 3s9v_A          268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD  347 (785)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            47899999999999999999999999999999999886533211    236999999999999999      99999997


Q ss_pred             CCcccc------cCchHHHHHHHHhhccccccccccccc
Q 038158           84 TKSYLI------SDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        84 ~~~~l~------~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      +++.+.      .+|++||||||||||+++|||.+|.+.
T Consensus       348 ~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA  386 (785)
T 3s9v_A          348 ENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEA  386 (785)
T ss_dssp             TTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             cCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHH
Confidence            643331      589999999999999999999988754

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=99.96  E-value=2.1e-30  Score=229.76  Aligned_cols=102  Identities=26%  Similarity=0.416  Sum_probs=87.1

Q ss_pred             CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCccc----ccCCchhhhhHHhhhhhhc------cccccccc
Q 038158           14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWK----KENVRVHATSLEFGLLRQH------EVFNGFKE   83 (123)
Q Consensus        14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~----~~~~dL~~~AL~FRLLRqh------DvF~~F~d   83 (123)
                      .+++++|++||+||||||+|||++||+++|+++|+.|...+.+    ....||++|||+|||||||      |||++|++
T Consensus       243 ~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk~  322 (727)
T 3pya_A          243 VDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEK  322 (727)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGEE
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhccC
Confidence            5789999999999999999999999999999999987643321    1236999999999999999      99999984


Q ss_pred             C---C---cccccCchHHHHHHHHhhccccccccccccc
Q 038158           84 T---K---SYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        84 ~---~---~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                      +   +   +.. .+|++|||+||||||+++|||.+|.+.
T Consensus       323 ~G~F~~~~~e~-~~Dv~glLsLYeAS~l~~~gE~iLdeA  360 (727)
T 3pya_A          323 EGEFFCFVGQS-NQAVTGMFNLYRASQLAFPREEILKNA  360 (727)
T ss_dssp             TTEECSSTTCC-CCCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             CCccccccccc-ccccHHHHHHHHHHHcCCCchHHHHHH
Confidence            3   2   233 579999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	3e-25
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	1e-21

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score = 92.6 bits (230), Expect = 3e-25
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 3   KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR- 61
             +V+ +  +  +P+ QLELI  L+ LGL+  F+ EI+ IL  IYN++K     +     
Sbjct: 27  IVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMD 86

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL----ISDDFNGILSLYVASYYS 106
           ++ T+L F LLRQH      +VFN FK  K       ++ D  G+L LY AS+  
Sbjct: 87  LYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLL 141

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 82.6 bits (204), Expect = 1e-21
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 16/114 (14%)

Query: 3   KGKVKTITNDATK-PLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVR 61
           K + +++     +     L LID ++ LG++YHFE EI  IL  IYN+N +         
Sbjct: 27  KEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN------D 80

Query: 62  VHATSLEFGLLRQH------EVFNGFKETKSYL---ISDDFNGILSLYVASYYS 106
           +  ++L+F LLRQH      E+F+ F++        ++ D  G+L+LY AS+  
Sbjct: 81  LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVR 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.2e-43  Score=270.69  Aligned_cols=108  Identities=36%  Similarity=0.578  Sum_probs=100.1

Q ss_pred             cHHHHHHHHhhc-CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDA-TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~-~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||++||.||.++ .++.++|+|||+||||||+|||++||+++|++||+.|..      ..|||+|||+|||||||     
T Consensus        26 Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~------~~dl~~~AL~FRLLRqhGy~Vs   99 (197)
T d5easa1          26 LKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSN------CNDLCTSALQFRLLRQHGFNIS   99 (197)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCC------CCSHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcCcccC
Confidence            799999999875 689999999999999999999999999999999998764      46999999999999999     


Q ss_pred             -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+    ++++ ++|++||||||||||++++||.+|.+.
T Consensus       100 ~dvF~~Fkd~~G~f~~~l-~~D~~glLsLYeAS~l~~~gE~iLdeA  144 (197)
T d5easa1         100 PEIFSKFQDENGKFKESL-ASDVLGLLNLYEASHVRTHADDILEDA  144 (197)
T ss_dssp             GGGGGGGBCTTSSBCGGG-GGCHHHHHHHHHHHTTCCTTCGGGTTH
T ss_pred             HHHHhhhccCCCCcccch-hHhHHHHHHHHHHhccCCCCcHHHHHH
Confidence             999999988    6777 899999999999999999999988653

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=9.7e-44  Score=274.40  Aligned_cols=114  Identities=38%  Similarity=0.522  Sum_probs=100.1

Q ss_pred             cHHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCc-ccccCCchhhhhHHhhhhhhc-----
Q 038158            2 QKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDK-WKKENVRVHATSLEFGLLRQH-----   75 (123)
Q Consensus         2 lkeeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~-~~~~~~dL~~~AL~FRLLRqh-----   75 (123)
                      ||++||+||.++.+++++|+|||+||||||+|||++||+++|+++|+...... ......|||+|||+|||||||     
T Consensus        26 Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS  105 (207)
T d1n1ba1          26 LIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS  105 (207)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhccccccccccHHHHHHHHHHHHHcCCCCC
Confidence            79999999998889999999999999999999999999999999998522100 012356999999999999999     


Q ss_pred             -ccccccccC-----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158           76 -EVFNGFKET-----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE  116 (123)
Q Consensus        76 -DvF~~F~d~-----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e  116 (123)
                       |||++|+|+     ++++ .+|++||||||||||+++|||.+|.+.
T Consensus       106 ~dvF~~F~d~~g~~fk~~l-~~Dv~glLsLYeAS~l~~~gE~iLdeA  151 (207)
T d1n1ba1         106 QDVFNCFKNEKGIDFKASL-AQDTKGMLQLYEASFLLRKGEDTLELA  151 (207)
T ss_dssp             GGGGGGGBCTTSSSBCGGG-GGCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             HHHHHHhccCCCCchhhhH-HHhHHHHHHHHHHHccCCCchHHHHHH
Confidence             999999988     4567 899999999999999999999988753