Citrus Sinensis ID: 038196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccccccccEEEEEEEccccccccEEEEEEcccccEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEccccEEEEEcccEEEEEEcccccccEEEEEEccccccEEEEcccccEEEEEEEEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEEcc
Coil and Loop (DISEMBL)
GYAFDYERSKKLVFtlkeppnssclvrnssiristettarsnnfevkgyfpdkyciivdpsgnivaqIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Flexible Loop (DISEMBL)
gyafdyerskklvftlkeppnssclvrnssiristettarsnnfevkgyfPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Low Complexity Region (SEG)
GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Disordered region (IsUnstruct)
************VFT*********LV****IRI*****ARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIF**
Disordered Region (DISOPRED)
GYA****RSKKLVFTLKEPP****LVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Disordered Region (DISEMBL)
GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Disordered Region (DISPRO)
*****YERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRCWSIRIFTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
A0MFH4	215	Protein LURP-one-related	yes	no	0.926	0.525	0.454	4e-25
Q9ZUF7	191	Protein LURP-one-related	no	no	0.860	0.549	0.491	8e-23
Q9SSC7	210	Protein LURP-one-related	no	no	0.868	0.504	0.285	0.0004
Q9SF24	194	Protein LURP-one-related	no	no	0.811	0.510	0.29	0.0007
Q9LZX1	217	Protein LURP-one-related	no	no	0.557	0.313	0.333	0.0008

>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640 PE=2 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 8/121 (6%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTE------TTARSNNFEVKGYFPDKY 54
           G+ +D E +++LVFTLK+P +S CLV+NSSI+I         ++ R+N  E+KG F ++ 
Sbjct: 96  GFGYDNEGTERLVFTLKDPKDS-CLVQNSSIKILVHGKPPKISSTRNNYVEIKGSFAERA 154

Query: 55  CIIVDPSGNIVAQIGVKKEIEDLM-ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
           C I+D  G  +A++ ++KE+E+++   KDLYH++VKP +DQ+FI  +IA LDYI+GE T 
Sbjct: 155 CNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIHGESTI 214

Query: 114 C 114
           C
Sbjct: 215 C 215

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 9/114 (7%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
           GY++DY+ S K VFTL++P +S C    SSIRIS      +  F+VKGYFPD+ C IVD 
Sbjct: 87  GYSYDYQGSPKPVFTLRDPKHS-CFSITSSIRISVGPG--NCYFDVKGYFPDRDCSIVDS 143

Query: 61  SGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
            GN++AQ+      ++ + S+D+Y +V KP +D+AF+  VIA LDYIYGE T C
Sbjct: 144 KGNVIAQV------KEWIGSRDIYKVVTKPSVDKAFVFGVIAVLDYIYGESTSC 191

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
           GY  +    +K +F ++    SS + RNS + +      + + + ++G F  + C +V+ 
Sbjct: 86  GYLGERSDGQKPIFGVR---RSSIIGRNS-VTVEVYGDYQCSEYLIEGSFGARNCTVVEA 141

Query: 61  -SGNIVAQIGVKKEIE-DLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
            +   VA+I  K +   ++M  KD++ + VKPG D AF   ++  LD IYG+
Sbjct: 142 ETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGD 193

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 12  LVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCII-VDPSGNIVAQIGV 70
           L++TLK       +     I ++     +  +F VKG + D+ C++    S  IVAQ+  
Sbjct: 91  LLYTLKRSSMIQIMKPKLDIFLAHNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHK 150

Query: 71  KKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
           K   + ++  K  + + V P +D AFI  +I  LD I  E
Sbjct: 151 KHTAQSILIGKSNFSVTVYPNVDFAFIVSLIVILDDINRE 190

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 43  NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
           +F VKG + ++ C++    S  IVAQ+  K  ++ +   KD + + V P +D AFIA ++
Sbjct: 145 DFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLV 204

Query: 102 ATLDYIYGE 110
             LD +  E
Sbjct: 205 VILDDVNRE 213

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
357450041	206	hypothetical protein MTR_2g042230 [Medic	0.926	0.548	0.649	1e-36
224068474	210	predicted protein [Populus trichocarpa]	0.918	0.533	0.675	5e-36
356532780	203	PREDICTED: protein LURP-one-related 6-li	0.926	0.556	0.649	2e-35
356556394	211	PREDICTED: protein LURP-one-related 6-li	0.926	0.535	0.641	3e-35
255550427	208	conserved hypothetical protein [Ricinus	0.918	0.538	0.641	1e-34
225444710	208	PREDICTED: protein LURP-one-related 6 [V	0.918	0.538	0.641	1e-34
351723407	204	uncharacterized protein LOC100306504 [Gl	0.877	0.524	0.612	2e-31
373938247	209	hypothetical protein [Diospyros kaki]	0.926	0.540	0.589	2e-30
356545778	166	PREDICTED: protein LURP-one-related 6-li	0.901	0.662	0.578	4e-30
116831511	216	unknown [Arabidopsis thaliana]	0.926	0.523	0.454	1e-23

>gi|357450041|ref|XP_003595297.1| hypothetical protein MTR_2g042230 [Medicago truncatula] gi|355484345|gb|AES65548.1| hypothetical protein MTR_2g042230 [Medicago truncatula] gi|388518905|gb|AFK47514.1| unknown [Medicago truncatula]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 94/117 (80%), Gaps = 4/117 (3%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN---NFEVKGYFPDKYCII 57
           GY+ +YE  +KLVF+LKEP NS CLV+N  IRI+ E  + SN   +FE++GYFPDK+C I
Sbjct: 91  GYSINYEGLQKLVFSLKEPGNS-CLVKNKGIRIAIEPGSVSNKSWDFEIRGYFPDKHCSI 149

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GNIVAQ+G+ KE+E LME+KDLYH+VVKPG+DQAF+  VIATLDYIYGE T C
Sbjct: 150 VDTRGNIVAQVGINKEVEKLMENKDLYHVVVKPGMDQAFVFGVIATLDYIYGESTYC 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068474|ref|XP_002326129.1| predicted protein [Populus trichocarpa] gi|222833322|gb|EEE71799.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 92/117 (78%), Gaps = 5/117 (4%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN---NFEVKGYFPDKYCII 57
           GY FDYE S+KLVF+LKEP N SCLVR ++IR+STE   RSN   +FE+KGYFPD+ C I
Sbjct: 96  GYTFDYEGSQKLVFSLKEP-NFSCLVRKNAIRVSTEPR-RSNKDWDFEIKGYFPDRSCSI 153

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GNIVAQIG+ KE + LM +KDLYH+VV+PGIDQ F   VIA LDYIYGE TRC
Sbjct: 154 VDSLGNIVAQIGINKEEDQLMANKDLYHVVVRPGIDQVFTFGVIAVLDYIYGESTRC 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532780|ref|XP_003534948.1| PREDICTED: protein LURP-one-related 6-like [Glycine max]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 4/117 (3%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN---NFEVKGYFPDKYCII 57
           GY+ +YE  + LVF+LKEP NS CLVRN++IRIS E    SN   +FEV+GYFPD+ C I
Sbjct: 88  GYSVNYEGLQSLVFSLKEP-NSCCLVRNNAIRISIEPRNASNKGWDFEVRGYFPDRSCSI 146

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GN++AQ+GV KE+E LMESKDLYH+VVKPGIDQAF+  VIA LD IYGE T C
Sbjct: 147 VDVRGNVIAQVGVNKEVEKLMESKDLYHVVVKPGIDQAFVFGVIAILDNIYGESTHC 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556394|ref|XP_003546511.1| PREDICTED: protein LURP-one-related 6-like [Glycine max]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 92/117 (78%), Gaps = 4/117 (3%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN---NFEVKGYFPDKYCII 57
           GY+ +YE  + LVF+LKEP N+ CLV+N++IRIS E    SN   +FEV+GYFPD+ C I
Sbjct: 90  GYSVNYEGLQSLVFSLKEP-NNCCLVKNNAIRISIEPRNSSNKGWDFEVRGYFPDRSCSI 148

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GN++AQ+GV KE+E LMESKDLYH+VVKPGIDQAF+  VIA LDYIYGE T C
Sbjct: 149 VDVRGNVIAQVGVNKEVEKLMESKDLYHVVVKPGIDQAFVFGVIAILDYIYGESTYC 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550427|ref|XP_002516264.1| conserved hypothetical protein [Ricinus communis] gi|223544750|gb|EEF46266.1| conserved hypothetical protein [Ricinus communis]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 95/117 (81%), Gaps = 5/117 (4%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN---NFEVKGYFPDKYCII 57
           G+ FDYE S+KLVF+LKEP +S CL+RN++IR+STE   RSN   +FE++G FPD+ C I
Sbjct: 94  GFTFDYEGSQKLVFSLKEPKDS-CLLRNNAIRVSTEPR-RSNKDWDFEIRGCFPDRDCRI 151

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GNI+AQIGVKKE+ ++M SKDLYH+VVK GIDQAF+  +I+ LDYIYGE TRC
Sbjct: 152 VDYFGNIIAQIGVKKEVNEVMRSKDLYHVVVKSGIDQAFVFGIISVLDYIYGESTRC 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444710|ref|XP_002278209.1| PREDICTED: protein LURP-one-related 6 [Vitis vinifera] gi|147777894|emb|CAN71378.1| hypothetical protein VITISV_001493 [Vitis vinifera] gi|297738553|emb|CBI27798.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 89/117 (76%), Gaps = 5/117 (4%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNS-SIRISTETTARSNN--FEVKGYFPDKYCII 57
           GY+FDYE  +KLVF+LKEP   SCL RN+ +IR S E      N  FE+ GYFPD+ C I
Sbjct: 94  GYSFDYEGLQKLVFSLKEPK--SCLARNNITIRTSIEHNRGHKNWDFEINGYFPDRDCSI 151

Query: 58  VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           VD  GNIVAQ+GVKKE+++ M SKDLYH+V+KPGIDQAF+  VIA LDYIYGE TRC
Sbjct: 152 VDSKGNIVAQVGVKKEVDEFMGSKDLYHVVIKPGIDQAFVFGVIAVLDYIYGESTRC 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723407|ref|NP_001235998.1| uncharacterized protein LOC100306504 [Glycine max] gi|255628727|gb|ACU14708.1| unknown [Glycine max]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 87/111 (78%), Gaps = 4/111 (3%)

Query: 2   YAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPS 61
           Y+ DYE S+KLVF+L+EP  +SCLV+N++IRI T    R  +F++ G FPDK C IVD  
Sbjct: 96  YSLDYEGSRKLVFSLREP--NSCLVKNNAIRIFTRNRGR--DFKISGCFPDKCCSIVDSK 151

Query: 62  GNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT 112
           GN VAQ+G+ KE+E+L+ESKDLYH+VV PG+DQAF+  VIA LDYIYGE T
Sbjct: 152 GNEVAQVGMMKEVEELIESKDLYHVVVNPGMDQAFVFGVIAVLDYIYGEST 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373938247|dbj|BAL46495.1| hypothetical protein [Diospyros kaki]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 88/117 (75%), Gaps = 4/117 (3%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSN--NFEVKGYFPDKYCIIV 58
           G+A D+E  ++LVF+LKEP  SSCLV+ + IRISTE        +FE+KGYF DK C I+
Sbjct: 94  GHAVDFEGPQRLVFSLKEP-KSSCLVKKNPIRISTEPKGYGTKWDFEIKGYFKDKACCII 152

Query: 59  DPSGNIVAQIGVKKEIEDLM-ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
           D  GNI+AQ+GV++E E+L+  SKDLYH+VV+PGIDQAFI  +IA LDYIY   TRC
Sbjct: 153 DSHGNIIAQVGVEEEAEELIPASKDLYHVVVRPGIDQAFIIGLIAVLDYIYDGSTRC 209

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545778|ref|XP_003541312.1| PREDICTED: protein LURP-one-related 6-like [Glycine max]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 4/114 (3%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
           GY+ DYE S+KL+F+L+E  ++SC V+N++IRI T    R  +F++ G FPDK C IVD 
Sbjct: 57  GYSLDYEGSRKLIFSLRE--SNSCFVKNNAIRIFTRN--RGCDFKISGCFPDKCCSIVDS 112

Query: 61  SGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
            GN VAQ+ + KE+E L+ESKDLYH+VV PG+DQAF+  VIA LDYIYGE T C
Sbjct: 113 KGNEVAQVRMMKEVEKLIESKDLYHVVVNPGMDQAFVFGVIAILDYIYGESTHC 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831511|gb|ABK28708.1| unknown [Arabidopsis thaliana]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 8/121 (6%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTE------TTARSNNFEVKGYFPDKY 54
           G+ +D E +++LVFTLK+P +S CLV+NSSI+I         ++ R+N  E+KG F ++ 
Sbjct: 96  GFGYDNEGTERLVFTLKDPKDS-CLVQNSSIKILVHGKPPKISSTRNNYVEIKGSFAERA 154

Query: 55  CIIVDPSGNIVAQIGVKKEIEDLM-ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
           C I+D  G  +A++ ++KE+E+++   KDLYH++VKP +DQ+FI  +IA LDYI+GE T 
Sbjct: 155 CNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIHGESTI 214

Query: 114 C 114
           C
Sbjct: 215 C 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2180459	215	AT5G20640 "AT5G20640" [Arabido	0.926	0.525	0.454	9.7e-25
TAIR|locus:2064686	191	AT2G05910 "AT2G05910" [Arabido	0.860	0.549	0.491	3.8e-23
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.868	0.504	0.285	1e-06
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.811	0.510	0.29	8.4e-06
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.557	0.313	0.333	1.6e-05
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.696	0.386	0.318	6.1e-05

TAIR|locus:2180459 AT5G20640 "AT5G20640" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 55/121 (45%), Positives = 86/121 (71%)

Query:     1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTE------TTARSNNFEVKGYFPDKY 54
             G+ +D E +++LVFTLK+P +S CLV+NSSI+I         ++ R+N  E+KG F ++ 
Sbjct:    96 GFGYDNEGTERLVFTLKDPKDS-CLVQNSSIKILVHGKPPKISSTRNNYVEIKGSFAERA 154

Query:    55 CIIVDPSGNIVAQIGVKKEIEDLM-ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
             C I+D  G  +A++ ++KE+E+++   KDLYH++VKP +DQ+FI  +IA LDYI+GE T 
Sbjct:   155 CNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIHGESTI 214

Query:   114 C 114
             C
Sbjct:   215 C 215

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2064686 AT2G05910 "AT2G05910" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query:     1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
             GY++DY+ S K VFTL++P +S C    SSIRIS      +  F+VKGYFPD+ C IVD 
Sbjct:    87 GYSYDYQGSPKPVFTLRDPKHS-CFSITSSIRISVGPG--NCYFDVKGYFPDRDCSIVDS 143

Query:    61 SGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
              GN++AQ+      ++ + S+D+Y +V KP +D+AF+  VIA LDYIYGE T C
Sbjct:   144 KGNVIAQV------KEWIGSRDIYKVVTKPSVDKAFVFGVIAVLDYIYGESTSC 191

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 32/112 (28%), Positives = 59/112 (52%)

Query:     1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
             GY  +    +K +F ++    SS + RNS + +      + + + ++G F  + C +V+ 
Sbjct:    86 GYLGERSDGQKPIFGVRR---SSIIGRNS-VTVEVYGDYQCSEYLIEGSFGARNCTVVEA 141

Query:    61 -SGNIVAQIGVKKEIE-DLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
              +   VA+I  K +   ++M  KD++ + VKPG D AF   ++  LD IYG+
Sbjct:   142 ETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGD 193

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query:    12 LVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCII-VDPSGNIVAQIGV 70
             L++TLK       +     I ++     +  +F VKG + D+ C++    S  IVAQ+  
Sbjct:    91 LLYTLKRSSMIQIMKPKLDIFLAHNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHK 150

Query:    71 KKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
             K   + ++  K  + + V P +D AFI  +I  LD I  E
Sbjct:   151 KHTAQSILIGKSNFSVTVYPNVDFAFIVSLIVILDDINRE 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query:    43 NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
             +F VKG + ++ C++    S  IVAQ+  K  ++ +   KD + + V P +D AFIA ++
Sbjct:   145 DFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLV 204

Query:   102 ATLDYIYGE 110
               LD +  E
Sbjct:   205 VILDDVNRE 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    26 VRNSSI--RISTETTARSNNFE---VKGYFPDKYCIIVDPSGNIVAQIGVKKEIE-DLME 79
             VR SSI  R + E        E   + G F  + C+I D     VA+I  K +   ++M 
Sbjct:   114 VRRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVML 173

Query:    80 SKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
              +D++ + +KPG D AF   ++  LD I G+
Sbjct:   174 GRDVFTLEIKPGFDGAFAMGLVVVLDQINGD 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.50    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.35u 0.10s 14.45t   Elapsed:  00:00:00
  Total cpu time:  14.35u 0.10s 14.45t   Elapsed:  00:00:00
  Start:  Mon May 20 17:44:02 2013   End:  Mon May 20 17:44:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280034 hypothetical protein (210 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam04525	185	pfam04525, Tub_2, Tubby C 2	8e-16

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score = 69.4 bits (170), Expect = 8e-16
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 1   GYAFDYERSKKLVFTLKE------PPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKY 54
            Y  +    K  +FT++         +SS   + +S  I  +    + +F++KG F D+ 
Sbjct: 80  VYRGEGTEGKDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDDEK--NCDFDIKGSFLDRS 137

Query: 55  CIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
           C I D S  ++A++  ++  + +   KD+Y + VKP +D AFI  ++
Sbjct: 138 CKIYDDSDKLIAEVK-RQTSKGVFLGKDVYTVTVKPEVDYAFIMALV 183

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	99.91
COG4894	159	Uncharacterized conserved protein [Function unknow	98.98
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	97.73
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	90.51

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=99.91  E-value=1.5e-24  Score=163.12  Aligned_cols=99  Identities=29%  Similarity=0.490  Sum_probs=59.1

Q ss_pred             CcCCcCCCCeeEEEEEcCCCcccccccceEEEEEcCC-------CCcceEEEEeecCCceeEEEcCCCCeEEEEeeeccc
Q 038196            2 YAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETT-------ARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEI   74 (122)
Q Consensus         2 y~~d~~~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~-------~~~~~~~i~G~~~~rsc~I~~~~g~vVAev~rK~~~   74 (122)
                      |++++.+.++|+|++|+++   .++.+++..+|+...       +..++|+|+|+|.+++|+|++..|++||||+||+..
T Consensus        82 ~~~~~~~~~~~i~tvkk~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~~~  158 (187)
T PF04525_consen   82 YRGGGSEGKKPIFTVKKKS---MLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKYSS  158 (187)
T ss_dssp             EETT---GGGEEEEEE-------------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE----
T ss_pred             EECCCCccCceEEEEEEec---ccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEecccce
Confidence            5666666789999999886   588899999999743       367899999999999999998779999999999888


Q ss_pred             ceeeeeeeeEEEEEeCCCcHHHHHHHHHh
Q 038196           75 EDLMESKDLYHIVVKPGIDQAFIAVVIAT  103 (122)
Q Consensus        75 ~~v~~G~dvf~v~V~PgvD~AfimaLvvi  103 (122)
                      ++++.|+|+|+|+|+||+|+|||||||+|
T Consensus       159 k~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  159 KKWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             ------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            99999999999999999999999999986

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=1.7e-09  Score=80.07  Aligned_cols=61  Identities=28%  Similarity=0.443  Sum_probs=56.1

Q ss_pred             eEEEEeecCCceeEEEcCCCCeEEEEeeecccceeeeeeeeEEEEEeCCCcHHHHHHHHHhhchhcC
Q 038196           43 NFEVKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYG  109 (122)
Q Consensus        43 ~~~i~G~~~~rsc~I~~~~g~vVAev~rK~~~~~v~~G~dvf~v~V~PgvD~AfimaLvvilD~i~~  109 (122)
                      +++|.|++.+-.++..++ ++++|||++|     ++.++|+|+|+|.|+-|.++|.|++|+||++..
T Consensus        98 ~~eihGNi~d~efkl~dg-~~~~aeVsKk-----wf~~rdTY~l~vapde~a~lii~i~VaLD~v~~  158 (159)
T COG4894          98 NWEIHGNIWDDEFKLTDG-ENVRAEVSKK-----WFSWRDTYHLQVAPDEDALLIIAIAVALDMVLY  158 (159)
T ss_pred             CeEEecceeceEEEEecC-Cceehhheee-----eEeccceEEEEEcCchhhHHHHHHHHHHHHHhc
Confidence            489999999999999988 5699999998     467899999999999999999999999999854

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=97.73  E-value=0.00064  Score=51.88  Aligned_cols=70  Identities=30%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             cceEEEEeec------CCceeEEEcCCCCeEEEEeeeccc--ceeeeeeeeEEEEEeCCCcH---HHHHHHHHhhchhcC
Q 038196           41 SNNFEVKGYF------PDKYCIIVDPSGNIVAQIGVKKEI--EDLMESKDLYHIVVKPGIDQ---AFIAVVIATLDYIYG  109 (122)
Q Consensus        41 ~~~~~i~G~~------~~rsc~I~~~~g~vVAev~rK~~~--~~v~~G~dvf~v~V~PgvD~---AfimaLvvilD~i~~  109 (122)
                      ...|+|+|..      .+..+.|++.+|+.||+|+||+..  .+.+...|.|.|+..|..|.   |+++|.++.+|-++-
T Consensus       140 ~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~F  219 (221)
T PF03803_consen  140 NPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYF  219 (221)
T ss_pred             ceEEEEeCCcceeccccceeeeeecccCcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            4568888873      456789999778999999999543  24667899999999888765   789999999999875


Q ss_pred             C
Q 038196          110 E  110 (122)
Q Consensus       110 ~  110 (122)
                      |
T Consensus       220 e  220 (221)
T PF03803_consen  220 E  220 (221)
T ss_pred             c
Confidence            5

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=90.51  E-value=1.4  Score=32.89  Aligned_cols=59  Identities=24%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCCeeEEEEEcCCCcccccccceEEEEEcCCCCcceEEEEe-ec--CCceeEEEcCCCCeEEEEeee
Q 038196            8 RSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKG-YF--PDKYCIIVDPSGNIVAQIGVK   71 (122)
Q Consensus         8 ~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~~~~~~~i~G-~~--~~rsc~I~~~~g~vVAev~rK   71 (122)
                      .++.-.|+|++.++   +.......|+=..  ....|+|+| .+  ..+.-.|+|.+|+.++.|++|
T Consensus        10 ~~~~~~l~v~~k~~---~~~~~~f~V~D~~--G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k   71 (187)
T PF04525_consen   10 SPQPVTLTVKKKSL---SFSGDDFTVYDEN--GNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRK   71 (187)
T ss_dssp             -SS-EEEEEE-------------EEEEETT--S-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--
T ss_pred             CCCceEEEEEEEEe---eecCCCEEEEcCC--CCEEEEEEEecccCCCCEEEEECCCCCEEEEEEee
Confidence            34455678865442   2234457777554  367899999 43  446678888889999999887

; PDB: 1ZXU_A 2Q4M_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		1e-04

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 43  NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
           +F VKG + ++ C++    S  IVAQ   K  ++ +   KD + + V P +D AFIA ++
Sbjct: 145 DFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLV 204
Query: 102 ATLDYIYGE 110
             LD +  E
Sbjct: 205 VILDDVNRE 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	1e-19

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score = 79.7 bits (196), Expect = 1e-19
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 1   GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVD- 59
            +       + L++T+K   +   L     + +      +  +F VKG + ++ C++   
Sbjct: 104 VFRGGSTDQRDLLYTVKRS-SMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAG 162

Query: 60  PSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
            S  IVAQ+  K  ++ +   KD + + V P +D AFIA ++  LD +  E
Sbjct: 163 ESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	99.9
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	89.3
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	80.19

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=99.90  E-value=8.6e-24  Score=160.97  Aligned_cols=108  Identities=24%  Similarity=0.434  Sum_probs=79.4

Q ss_pred             CcCCcCCCCeeEEEEEcCCCcccccccceEEEEEcCC--CCcceEEEEeecCCceeEEEcCC-CCeEEEEeeecccceee
Q 038196            2 YAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETT--ARSNNFEVKGYFPDKYCIIVDPS-GNIVAQIGVKKEIEDLM   78 (122)
Q Consensus         2 y~~d~~~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~--~~~~~~~i~G~~~~rsc~I~~~~-g~vVAev~rK~~~~~v~   78 (122)
                      |.+++.++++|+|++|+++   +++.++.++|+++++  ++.++|+|+|+|.+++|+|++++ |++||+|+||+++++++
T Consensus       105 ~~~~~~~~~~~i~~vrk~~---~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~  181 (217)
T 1zxu_A          105 FRGGSTDQRDLLYTVKRSS---MLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVF  181 (217)
T ss_dssp             EETTCCCGGGEEEEEEC----------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC-------
T ss_pred             EcCCCCCCCcEEEEEEEec---cccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeeccccc
Confidence            3444444457999999875   355677899999875  35689999999999999999976 79999999999889999


Q ss_pred             eeeeeEEEEEeCCCcHHHHHHHHHhhchhcCCCc
Q 038196           79 ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT  112 (122)
Q Consensus        79 ~G~dvf~v~V~PgvD~AfimaLvvilD~i~~~~~  112 (122)
                      +|+|+|.|+|.||+|++|||||++++|+|+++..
T Consensus       182 ~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~  215 (217)
T 1zxu_A          182 LGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR  215 (217)
T ss_dssp             -CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999999998864

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=89.30  E-value=1.9  Score=31.77  Aligned_cols=58  Identities=17%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CCeeEEEEEcCCCcccccccceEEEEEcCCCCcceEEEEeecC--CceeEEEcCCCCeEEEEeee
Q 038196            9 SKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFP--DKYCIIVDPSGNIVAQIGVK   71 (122)
Q Consensus         9 ~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~~~~~~~i~G~~~--~rsc~I~~~~g~vVAev~rK   71 (122)
                      +....|+||+..+  .+. ....+|+-+.  ....|+++|.+.  .....|+|.+|+.|.+|+||
T Consensus        35 ~~~~~l~vkqk~~--~~~-~~~f~V~D~~--G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk   94 (217)
T 1zxu_A           35 PYPIDMAIVRKMM--SLT-DGNFVITDVN--GNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREK   94 (217)
T ss_dssp             SSCEEEEEECC--------CCCEEEEETT--SCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-
T ss_pred             CCCcEEEEEEEEe--Eee-CCCEEEEeCC--CCEEEEEEccccCCCCEEEEECCCCCEEEEEEcc
Confidence            4566788886553  122 2357887544  467899999864  34567889889999999998

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=80.19  E-value=12  Score=29.21  Aligned_cols=80  Identities=13%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             CCCeeEEEEEcCCCcccccccceEEEEEcCCC---CcceE--EEEeecCCceeEEEcCC--------------CCeEEEE
Q 038196            8 RSKKLVFTLKEPPNSSCLVRNSSIRISTETTA---RSNNF--EVKGYFPDKYCIIVDPS--------------GNIVAQI   68 (122)
Q Consensus         8 ~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~---~~~~~--~i~G~~~~rsc~I~~~~--------------g~vVAev   68 (122)
                      +.++.|+..||..    -+..+..-|++..++   ....|  +++.++.+..++|||..              ..-+|.|
T Consensus        65 ~~~~fLLaarK~k----~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V  140 (276)
T 2fim_A           65 EKKVFLLAGRKRK----RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAV  140 (276)
T ss_dssp             SSCEEEEEEEECT----TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEE
T ss_pred             CCCEEEEEEEecc----CCCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEE
Confidence            3456788887764    222344555554331   22344  78999999999999841              1678888


Q ss_pred             eeecccceeeeeeeeEEEEEeCCCc
Q 038196           69 GVKKEIEDLMESKDLYHIVVKPGID   93 (122)
Q Consensus        69 ~rK~~~~~v~~G~dvf~v~V~PgvD   93 (122)
                      .-+.+..+. -|.-.+.+.+ |+.+
T Consensus       141 ~Ye~nvlg~-~gPR~m~v~i-P~~~  163 (276)
T 2fim_A          141 IYETNVLGF-RGPRRMTVII-PGMS  163 (276)
T ss_dssp             EEC----------CCEEEEE-ECBC
T ss_pred             EEEecccCC-CCCeEEEEEe-cCcc
Confidence            776444322 2566777777 6653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	3e-16

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	99.95
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	90.18