Citrus Sinensis ID: 038208
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | 2.2.26 [Sep-21-2011] | |||||||
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.991 | 0.619 | 0.454 | 2e-53 | |
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.995 | 0.635 | 0.436 | 7e-53 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.991 | 0.633 | 0.411 | 3e-51 | |
| P0DH60 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.991 | 0.627 | 0.446 | 2e-49 | |
| Q93WU2 | 357 | Eugenol O-methyltransfera | N/A | no | 0.982 | 0.627 | 0.429 | 3e-49 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.636 | 0.397 | 3e-49 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.636 | 0.397 | 4e-49 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.636 | 0.397 | 6e-49 | |
| Q84KK6 | 367 | Isoflavone 4'-O-methyltra | N/A | no | 0.991 | 0.615 | 0.445 | 7e-49 | |
| Q93WU3 | 356 | Chavicol O-methyltransfer | N/A | no | 0.982 | 0.629 | 0.416 | 1e-48 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/273 (45%), Positives = 155/273 (56%), Gaps = 47/273 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD+IH HG+ ITL EL +RLL H+G
Sbjct: 25 VYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRPSKIGVLHRFLRLLTHNGF 84
Query: 44 FNKTKVNG-----QEEAYGLTASSTLLIKEN-------------PFSLSSWFKGT----- 80
F KT V+ +E AYGLT S LL+K N P SL W
Sbjct: 85 FAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSLDMWRSSKKWFLE 144
Query: 81 ---ELTLWGTVHGIKFWEFLNQNPGIN--QRFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
ELTL+ + G FWEFLN+ + F EAMA+DS + + ECK +FEGLG
Sbjct: 145 DNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMFK--LALKECKHVFEGLG 202
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
SLVDV GG G +++I EAFP +KCTV D P VVANL +NL ++ GDMF+ VPPADA
Sbjct: 203 SLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGDMFKSVPPADAV 262
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
L K V H DE LKILK +EAI+ G+ GK
Sbjct: 263 LLKWVLHDWNDELSLKILKNCKEAISGRGKEGK 295
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2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 2 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 155/266 (58%), Gaps = 39/266 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+FN + SMSLKCAI+L I DIIH HG+ +TL EL MR+LVHSG
Sbjct: 23 IFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRSQCVYRLMRILVHSGF 82
Query: 44 FNKTKVN--GQEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTEL 82
+V +EE Y LT +S LL+ ++ S LS+WF+ +
Sbjct: 83 LAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILTKPWHYLSAWFQNDDP 142
Query: 83 TLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGG 142
T + T + FW++ P +N FNEAMASD+ ++TS ++K E + +F GL SLVDVGG
Sbjct: 143 TPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLK-EGQGVFAGLNSLVDVGG 201
Query: 143 GNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFH 202
G G ++ I+ AFP + CTVLDL HVVA L + NL Y AGDMF+ +PPADA L K + H
Sbjct: 202 GTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEAIPPADAILLKWILH 261
Query: 203 GLGDEDGLKILKKRREAIASNGERGK 228
+E+ +KILK+ REAI S GK
Sbjct: 262 DWSNEECVKILKRCREAIPSKENGGK 287
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 155/267 (58%), Gaps = 41/267 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++ + SM LK +EL I +IIH HG+ IT+SEL MR + H+G
Sbjct: 24 IYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQTKAGNVQRIMRYMAHNGF 83
Query: 44 FNKTKVNGQEE---AYGLTASSTLLIKENPFSLS-------------------SWFKGTE 81
F + ++ ++E AY LTA+S LL+K + L+ W +
Sbjct: 84 FERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQLKKWIYEED 143
Query: 82 LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVG 141
LTL+G G FWEFLN+NP N+ FN+AMASDS+++ + +C FEG+ S+VDVG
Sbjct: 144 LTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN--LALRDCNSGFEGVESIVDVG 201
Query: 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVF 201
GG G+ ++II + FP +KC V D P VV NL T+NL Y+ GDMFQ VP ADA L K +
Sbjct: 202 GGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKADAVLLKWIL 261
Query: 202 HGLGDEDGLKILKKRREAIASNGERGK 228
H D D +IL+K +EA++S+GE+GK
Sbjct: 262 HNWTDNDCRRILEKCKEAVSSDGEKGK 288
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 151/269 (56%), Gaps = 43/269 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD IH HG+ +TL EL +RLL H+G
Sbjct: 24 IYNFVSSMALKSAVELGIADAIHNHGKPMTLPELASSLKLHPSKVNILYRFLRLLTHNGF 83
Query: 44 FNKTKV--NGQEE--AYGLTASSTLLIKENPFSLSSWFKGT----ELTLWGT-------- 87
F KT V NG+EE AY LT SS LL+ LSS KG L LWG
Sbjct: 84 FAKTTVKSNGEEEETAYVLTPSSKLLVSGKSTCLSSVVKGALHPISLDLWGVSKKWFHED 143
Query: 88 --------VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVD 139
G +W+FLN++ F +AMA+DS + + E K +FEGL SLVD
Sbjct: 144 KEQTLFECATGENYWDFLNKDSDYLSIFQDAMAADSRLFK--LAIQENKHVFEGLESLVD 201
Query: 140 VGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKL 199
V GG G +++I EAFP IKCTV D P VV NL +NL +++GDMF+ VP ADA L K
Sbjct: 202 VAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVSGDMFKSVPSADAVLLKW 261
Query: 200 VFHGLGDEDGLKILKKRREAIASNGERGK 228
V H DE LKILKK +EAI+ G+ GK
Sbjct: 262 VLHDWNDELSLKILKKSKEAISHKGKDGK 290
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3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 148/263 (56%), Gaps = 39/263 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
M+ +SMSLKCAI+L I DI+H HGR +TLS+L MR LV+S
Sbjct: 26 MYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQCFQRLMRALVNSNF 85
Query: 44 F-NKTKVNGQEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTE-L 82
F + N QE Y LT +S LL+KE P + +S WF +
Sbjct: 86 FIEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHMSEWFTHEKHA 145
Query: 83 TLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGG 142
T + +G FWE L P + F+EAM+ DS ++ K + K + EG+ +LVDVGG
Sbjct: 146 TQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTK-DYKHVIEGIRTLVDVGG 204
Query: 143 GNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFH 202
GNG+ ++ I EA P IKCTV+DLPHVVA L TDNL YI GDMFQ +P ADA L K + H
Sbjct: 205 GNGTMAKAIVEAMPTIKCTVIDLPHVVAGLESTDNLNYIGGDMFQSIPSADAILLKSIIH 264
Query: 203 GLGDEDGLKILKKRREAIASNGE 225
D +GLKILKK ++A+ G+
Sbjct: 265 DWDDVEGLKILKKCKDAVVMGGK 287
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Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 153/264 (57%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
++ + SMSLK A+E++I +II HG+ I+LS LMR L H+G
Sbjct: 24 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTELTL 84
F + +EE+Y LT +S LL++ + L+ W +LTL
Sbjct: 84 FEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+AMASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 153/264 (57%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
++ + SMSLK A+E++I +II HG+ I+LS LMR L H+G
Sbjct: 24 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTELTL 84
F + +EE+Y LT +S LL++ + L+ W +LTL
Sbjct: 84 FEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+AMASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 153/264 (57%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
++ + SMSLK A+ ++I +IIH HG+ I+LS LMR L H+G
Sbjct: 24 IYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTELTL 84
F + +EE+Y LT +S LL++ + L+ W +LTL
Sbjct: 84 FEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+AMASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q84KK6|I4OMT_GLYEC Isoflavone 4'-O-methyltransferase OS=Glycyrrhiza echinata GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/276 (44%), Positives = 159/276 (57%), Gaps = 50/276 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD+IH HG+ ITL EL +RLL H+G
Sbjct: 24 VYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGILYRFLRLLTHNGF 83
Query: 44 FNKTKV------NGQEE---AYGLTASSTLLIKENPFSLSS------------------- 75
F KT V +G+EE AY LT S LL+K P L+S
Sbjct: 84 FAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALHPSSLDMWRSSEK 143
Query: 76 WFK-GTELTLWGTVHGIKFWEFLNQNP--GINQRFNEAMASDSEIMTSFVVKAECKQIFE 132
WFK ELTL+ + G FW+FLN++ G F EAMA+DS++ + EC+ +FE
Sbjct: 144 WFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFK--LALKECRHVFE 201
Query: 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPA 192
GL SLVDVGGG G +++I E FP +KCTV D P VV NL +NLK++ GDMF+ +PPA
Sbjct: 202 GLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFVGGDMFKSIPPA 261
Query: 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
DA L K V H DE LKILK +EAI+ G+ GK
Sbjct: 262 DAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGK 297
|
2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone, (+)-6a-hydroxymaackiain or medicarpin as substrate, but not daidzein or (-)-6a-hydroxymaackiain. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 147/262 (56%), Gaps = 38/262 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
M+ +SMSLKCAI+L I DI+H H +TLS+L MR LV+S
Sbjct: 26 MYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQSFQRLMRALVNSNF 85
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFS-------------------LSSWFKG-TELT 83
F + N QE Y LT +S LL+K P + +S WFK T
Sbjct: 86 FIEENSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMSEWFKHENHAT 145
Query: 84 LWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGG 143
+ +G FWE L P + + F+EAM+ DS ++ + K + K + +G+ +LVDVGGG
Sbjct: 146 QFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTK-DYKHVIDGIRTLVDVGGG 204
Query: 144 NGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHG 203
NG+ ++ I EA P +KCTVLDLPHVVA L TD L YI GDMFQ +P ADA L K + H
Sbjct: 205 NGTMAKAIVEAVPTMKCTVLDLPHVVAGLESTDKLSYIGGDMFQSIPSADAILLKFIIHD 264
Query: 204 LGDEDGLKILKKRREAIASNGE 225
DE+GLKILK+ ++A+ G+
Sbjct: 265 WDDEEGLKILKRCKDAVGIGGK 286
|
Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 0.978 | 0.621 | 0.516 | 2e-65 | |
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 0.991 | 0.629 | 0.522 | 2e-65 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 0.991 | 0.607 | 0.516 | 8e-64 | |
| 225443574 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.995 | 0.634 | 0.498 | 1e-59 | |
| 123718188 | 346 | putative orcinol O-methyltransferase [Ro | 0.995 | 0.656 | 0.471 | 2e-59 | |
| 224113601 | 359 | flavonoid o-methyltransferase related [P | 0.986 | 0.626 | 0.469 | 2e-59 | |
| 359483934 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.995 | 0.634 | 0.501 | 2e-59 | |
| 55163122 | 346 | putative orcinol O-methyltransferase [Ro | 0.995 | 0.656 | 0.467 | 3e-59 | |
| 225446489 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.995 | 0.635 | 0.473 | 3e-59 | |
| 55163124 | 346 | putative orcinol O-methyltransferase [Ro | 0.995 | 0.656 | 0.467 | 3e-59 |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/265 (51%), Positives = 171/265 (64%), Gaps = 42/265 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+FN+++SM LKCA++L I DIIH HG+ ITL EL MR+LVHSG
Sbjct: 23 IFNYINSMCLKCAVQLGIPDIIHKHGKPITLPELVSALHIHPTKINFMYRLMRMLVHSGF 82
Query: 44 FNKTKV-NGQEE---AYGLTASSTLLIKENP-------------------FSLSSWFKGT 80
F+ TK NGQEE Y LT SS LL+K+NP L WF+G
Sbjct: 83 FSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLKPFVDSLLKPDFVTPGHVLGDWFRGN 142
Query: 81 ELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDV 140
ELT++ HG+ FWE+ +NP NQ FNEAMASDS +M +V +CK IFEG+ SLVDV
Sbjct: 143 ELTVFQRAHGMAFWEYNERNPEFNQLFNEAMASDSRMMN--LVIRDCKPIFEGVNSLVDV 200
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLV 200
GGGNGS +RIISEAFP +KCTVL+LP V+ NL T NL Y+ GDMFQ +P ADA + KL+
Sbjct: 201 GGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNLNYVGGDMFQHIPSADAIILKLI 260
Query: 201 FHGLGDEDGLKILKKRREAIASNGE 225
HG DE+ +KILKK +EAI+S G+
Sbjct: 261 LHGWNDEECVKILKKCKEAISSTGK 285
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/268 (52%), Positives = 169/268 (63%), Gaps = 42/268 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
MFN+++SMSL CA +L I DIIH HGR ITL LMR+LVHSG
Sbjct: 24 MFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSALHIAPNKTSIIYRLMRMLVHSGF 83
Query: 44 FNKTKV-----NGQEEAYGLTASSTLLIKEN-----PF-------------SLSSWFKGT 80
F TK G+EEAY LT S LL+K+N PF SL WF+G
Sbjct: 84 FATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSPFMSLINPAFVTPWLSLGDWFRGN 143
Query: 81 ELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDV 140
E T + +G+ FWE+ NQNP +N+ FNEAMA DS++M +V +CK IFEGL S+VDV
Sbjct: 144 EPTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMN--LVIRDCKPIFEGLNSMVDV 201
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLV 200
GGG GS SRIISEAFP + CTVL+LP V+ NL T NL Y+ GDMFQ +P ADA L KL+
Sbjct: 202 GGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYVGGDMFQHIPSADAVLLKLI 261
Query: 201 FHGLGDEDGLKILKKRREAIASNGERGK 228
FHG DED LKILKK +EAI+S + GK
Sbjct: 262 FHGWSDEDCLKILKKCKEAISSKEKGGK 289
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 169/267 (63%), Gaps = 41/267 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
MFN+L+SMSL CA +L I DIIH HGR ITL EL MR+LVHSG
Sbjct: 38 MFNYLNSMSLVCAAQLGIPDIIHNHGRPITLPELVSALHIPPNKSSCIYRLMRMLVHSGF 97
Query: 44 FNKTKV----NGQEEAYGLTASSTLLIKEN-----PF-------------SLSSWFKGTE 81
F TK G EAY LT S LL+K+N PF SL WF+G+E
Sbjct: 98 FATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPFMSLINPAFVTPWHSLGDWFRGSE 157
Query: 82 LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVG 141
T + +G+ FWE+ NQNP +N FN AMA DS++M +V +CK IFEGL S+VDVG
Sbjct: 158 PTAFQQAYGMAFWEYNNQNPELNGLFNAAMACDSQMMN--LVIRDCKPIFEGLDSMVDVG 215
Query: 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVF 201
GG GS +RIISE FP + CTVL++P V+ANL T+NLKY+ GDMFQ +P ADA L KL+F
Sbjct: 216 GGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENLKYVGGDMFQHIPSADAVLLKLIF 275
Query: 202 HGLGDEDGLKILKKRREAIASNGERGK 228
HG DED +KILKK +EAI+S + GK
Sbjct: 276 HGWSDEDCVKILKKCKEAISSKEKGGK 302
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443574|ref|XP_002278208.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 162/271 (59%), Gaps = 44/271 (16%)
Query: 1 MFNH----LSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLV 39
M+ H ++SM+L+CA++L I DIIH H TL +L MRLLV
Sbjct: 19 MYKHICSFMNSMALRCAVQLGIPDIIHNHAHPTTLPQLVSALHIPPTKASCVHRLMRLLV 78
Query: 40 HSGCFNKTKVNG--QEEAYGLTASSTLLIKENPFS--------------------LSSWF 77
HSG F KV+ +EE Y LT SS LL+K+NP S W
Sbjct: 79 HSGFFAMAKVHEHEEEEGYILTPSSRLLLKDNPTSNLSPLVLTMLHPVLVTPWHFFGDWL 138
Query: 78 KGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSL 137
+G +LT + T HG+ FW+ + NP I FNE MASDS++M S V E K +FEGL SL
Sbjct: 139 RGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQMM-SVVNFRELKPVFEGLSSL 197
Query: 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLF 197
VD+GGG G +RIISEAFP +KCTV DLPHVVANLPE+ NL+Y+ GDMFQ VP ADA L
Sbjct: 198 VDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNLEYVGGDMFQSVPSADAILL 257
Query: 198 KLVFHGLGDEDGLKILKKRREAIASNGERGK 228
K V H DED LKILKK REAI S E GK
Sbjct: 258 KCVLHDWSDEDCLKILKKCREAIRSEEEGGK 288
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|123718188|emb|CAJ65609.1| putative orcinol O-methyltransferase [Rosa bracteata] | Back alignment and taxonomy information |
|---|
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 169/265 (63%), Gaps = 38/265 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+F+ ++SMSLK AI+L I DII+ HG +TLSEL MR+LVHSG
Sbjct: 23 IFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGF 82
Query: 44 FNKTKVNG-QEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTELT 83
F K K++ EE Y LT +S LL+K++P S LS+WF+ + T
Sbjct: 83 FAKKKLSTTDEEGYTLTDASQLLLKDHPLSITPFLTAMLDPVLTKPWNYLSTWFQNDDPT 142
Query: 84 LWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGG 143
+ T HG+ FW++ N P I FN+AMASD+ ++TS ++ +CK +FEGL SLVDVGGG
Sbjct: 143 PFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIID-DCKGVFEGLESLVDVGGG 201
Query: 144 NGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHG 203
G+ ++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ VPPADA L K + H
Sbjct: 202 TGTVAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADAVLLKWILHD 261
Query: 204 LGDEDGLKILKKRREAIASNGERGK 228
DE+ +KILK+ REAI S ++GK
Sbjct: 262 WNDEECVKILKRSREAITSKDKKGK 286
|
Source: Rosa bracteata Species: Rosa bracteata Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113601|ref|XP_002332531.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222832667|gb|EEE71144.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 168/264 (63%), Gaps = 39/264 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+FN ++SM+LKCA++L I D+I HG+ +TLSEL MR+LVHSG
Sbjct: 23 IFNFINSMTLKCAVQLGIPDVIQKHGKPMTLSELVSALPIHPSKAQYVHRLMRILVHSGF 82
Query: 44 FNKTKVNG--QEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTEL 82
F++ +NG +EAY LT S+ LL+K+NP++ LS+WF+ E
Sbjct: 83 FSQQNLNGVHNQEAYSLTQSTRLLLKDNPWNMRPLLLFELDSVLTKPWDCLSTWFRNDEA 142
Query: 83 TLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGG 142
T + H FWE+ Q+P I FNEAMASDS I+ S +V ++CK IFEGL SLVDVGG
Sbjct: 143 TAFSVAHENTFWEYAGQDPRIKNLFNEAMASDS-ILASKLVVSKCKGIFEGLSSLVDVGG 201
Query: 143 GNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFH 202
G G+ ++ I+EAFP + CTV DLPHVV++L NLKY+ GDMFQ VPPA+A L K + H
Sbjct: 202 GFGTMAKGIAEAFPHMDCTVFDLPHVVSDLQGCKNLKYVGGDMFQAVPPAEAILLKWILH 261
Query: 203 GLGDEDGLKILKKRREAIASNGER 226
DED +KIL++ R+AI S G++
Sbjct: 262 DWSDEDCVKILRRCRQAIMSKGQQ 285
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/271 (50%), Positives = 161/271 (59%), Gaps = 44/271 (16%)
Query: 1 MFNH----LSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLV 39
M+ H ++SM+LKCA++L I DIIH H TL +L MRLLV
Sbjct: 19 MYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLVSALHIPPTKASCVHRLMRLLV 78
Query: 40 HSGCFNKTKVNG--QEEAYGLTASSTLLIKENPFS--------------------LSSWF 77
HSG F KV+ +EE Y LT SS LL K+NP S W
Sbjct: 79 HSGFFAIAKVHEHEEEEGYILTPSSRLLFKDNPTSNLSPFVLTVLHPALVTPWHFFGDWL 138
Query: 78 KGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSL 137
+G +LT + T HG+ FW+ + NP I FNE MASDS++M S V E K +FEGL SL
Sbjct: 139 RGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQMM-SVVNFRELKPVFEGLSSL 197
Query: 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLF 197
VD+GGG G +RIISEAFP +KCTV DLPHVVANLPE+ NL+Y+ GDMFQ VP ADA L
Sbjct: 198 VDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNLEYVGGDMFQSVPSADAILL 257
Query: 198 KLVFHGLGDEDGLKILKKRREAIASNGERGK 228
K V H DED LKILKK REAI S E GK
Sbjct: 258 KCVLHDWSDEDCLKILKKCREAIRSEEEGGK 288
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|55163122|emb|CAH05079.1| putative orcinol O-methyltransferase [Rosa gallica] | Back alignment and taxonomy information |
|---|
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 169/265 (63%), Gaps = 38/265 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+F+ ++SMSLK AI+L I DII+ HG +TLSEL MR+LVHSG
Sbjct: 23 IFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGF 82
Query: 44 FNKTKVN-GQEEAYGLTASSTLLIKENPFSL-------------------SSWFKGTELT 83
F K K++ EE Y LT +S LL+K++P SL S+WF+ + T
Sbjct: 83 FAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPT 142
Query: 84 LWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGG 143
+ T HG+ FW++ N +P I FN+AMASD+ ++TS ++ +CK +FEGL SLVDVGGG
Sbjct: 143 PFDTAHGMTFWDYGNHHPSIAHFFNDAMASDARLVTSVIID-DCKGVFEGLESLVDVGGG 201
Query: 144 NGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHG 203
G+ ++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ VPPAD L K + H
Sbjct: 202 TGTLAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADTVLLKWILHD 261
Query: 204 LGDEDGLKILKKRREAIASNGERGK 228
DE+ +KILK+ REAI S ++GK
Sbjct: 262 WNDEECVKILKRSREAITSKDKKGK 286
|
Source: Rosa gallica Species: Rosa gallica Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 167/266 (62%), Gaps = 39/266 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+FN ++SMSLKCAIEL I DIIH HG+ +TLSEL MRLLV SG
Sbjct: 23 IFNFINSMSLKCAIELGIPDIIHNHGKPMTLSELVAELPVNPEKTKCVYRLMRLLVQSGF 82
Query: 44 FNKTKV--NGQEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTEL 82
F + +V +GQEE Y LT +S LL+K++P S +S+WF+ +
Sbjct: 83 FTRKRVQESGQEEGYVLTHASRLLLKDDPLSARPFLLAMLDPVLITPWQYVSAWFQNDDP 142
Query: 83 TLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGG 142
T + T HG FW++ P +N FNEAMASD+ ++TS ++K +CK IF GL SLVDVGG
Sbjct: 143 TPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDARLVTSVLIK-DCKGIFVGLNSLVDVGG 201
Query: 143 GNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFH 202
G G+ +R I+ AFP + CTVLDLPHVVA L + NL Y+AGDMF+ +PPADA L K + H
Sbjct: 202 GTGTVARAIANAFPHLNCTVLDLPHVVAGLEGSKNLNYLAGDMFEAIPPADAILLKWILH 261
Query: 203 GLGDEDGLKILKKRREAIASNGERGK 228
++ +KILK+ R+AI S + GK
Sbjct: 262 DWNHDECVKILKRCRDAIPSKEKGGK 287
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|55163124|emb|CAH05080.1| putative orcinol O-methyltransferase [Rosa gallica] | Back alignment and taxonomy information |
|---|
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 169/265 (63%), Gaps = 38/265 (14%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
+F+ ++SMSLK AI+L I DII+ HG +TLSEL MR+LVHSG
Sbjct: 23 IFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGF 82
Query: 44 FNKTKVNG-QEEAYGLTASSTLLIKENPFSL-------------------SSWFKGTELT 83
F K K++ EE Y LT +S LL+K++P SL S+WF+ + T
Sbjct: 83 FAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMPDPVLTKPWNYLSTWFQNDDPT 142
Query: 84 LWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGG 143
+ T HG+ FW++ N +P I FN+AMASD+ ++TS ++ +CK +FEGL SLVDVGGG
Sbjct: 143 PFDTAHGMTFWDYGNHHPSIAHFFNDAMASDARLVTSVIIN-DCKGVFEGLESLVDVGGG 201
Query: 144 NGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHG 203
G+ ++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ VPPAD L K + H
Sbjct: 202 TGTLAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADTVLLKWILHD 261
Query: 204 LGDEDGLKILKKRREAIASNGERGK 228
DE+ +KILK+ REAI S ++GK
Sbjct: 262 WNDEECVKILKRSREAITSKDKKGK 286
|
Source: Rosa gallica Species: Rosa gallica Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.679 | 0.422 | 0.512 | 1.4e-46 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.679 | 0.424 | 0.521 | 2.3e-46 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.675 | 0.431 | 0.506 | 2.6e-45 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.714 | 0.445 | 0.448 | 9.6e-44 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.666 | 0.428 | 0.451 | 3.6e-42 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.679 | 0.445 | 0.452 | 5.9e-42 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.706 | 0.430 | 0.389 | 6.3e-35 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.657 | 0.392 | 0.384 | 5.2e-28 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.938 | 0.658 | 0.339 | 9.7e-25 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.732 | 0.463 | 0.333 | 1.2e-24 |
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 82/160 (51%), Positives = 104/160 (65%)
Query: 72 SLSSWFK-GTELTLWGTVHGIKFWEFLNQNP--GINQRFNEAMASDSEIMTSFVVKAECK 128
S WFK ELTL+ + G FW+FLN++ G F EAMA+DS+ M +K EC+
Sbjct: 140 SSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQ-MFKLALK-ECR 197
Query: 129 QIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF 188
+FEGL SLVDVGGG G +++I E FP +KCTV D P VV NL +NLK++ GDMF+
Sbjct: 198 HVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFVGGDMFKS 257
Query: 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
+PPADA L K V H DE LKILK +EAI+ G+ GK
Sbjct: 258 IPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGK 297
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 84/161 (52%), Positives = 102/161 (63%)
Query: 72 SLSSWF--KGTELTLWGTVHGIKFWEFLNQNPGIN--QRFNEAMASDSEIMTSFVVKAEC 127
S WF ELTL+ + G FWEFLN+ + F EAMA+DS M +K EC
Sbjct: 137 SSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSH-MFKLALK-EC 194
Query: 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ 187
K +FEGLGSLVDV GG G +++I EAFP +KCTV D P VVANL +NL ++ GDMF+
Sbjct: 195 KHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGDMFK 254
Query: 188 FVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
VPPADA L K V H DE LKILK +EAI+ G+ GK
Sbjct: 255 SVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGK 295
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 79/156 (50%), Positives = 106/156 (67%)
Query: 73 LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFE 132
L W +LTL+G G FWEFLN+NP N+ FN+AMASDS+ M + ++ +C FE
Sbjct: 135 LKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQ-MINLALR-DCNSGFE 192
Query: 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPA 192
G+ S+VDVGGG G+ ++II + FP +KC V D P VV NL T+NL Y+ GDMFQ VP A
Sbjct: 193 GVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKA 252
Query: 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
DA L K + H D D +IL+K +EA++S+GE+GK
Sbjct: 253 DAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGK 288
|
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| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 74/165 (44%), Positives = 109/165 (66%)
Query: 60 ASSTLLIKENPFSLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMT 119
A S + E LS WF+ + + T +G+ F E+ + +N FNEAMA D+ +
Sbjct: 128 AMSDPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVN 187
Query: 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLK 179
S ++ EC++IF+GL S+VDVGGG G+ ++ I+ AFPG++CTVLDLP+VV L ++NL
Sbjct: 188 S-ILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLS 246
Query: 180 YIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIA-SN 223
+++GDMF F+P ADA K + H DE+ +KILKK +EAI+ SN
Sbjct: 247 FVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSN 291
|
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| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 70/155 (45%), Positives = 106/155 (68%)
Query: 72 SLSSWFKGTE--LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQ 129
SLS W++ + T + T HG FW + +++ + FNEAMASDS++++ ++ E K
Sbjct: 129 SLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLI-GEYKF 187
Query: 130 IFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFV 189
+FEGL SLVD+GGG G+ ++ I++ FP +KCTV DLPHVVANL +N++++AGDMF+ +
Sbjct: 188 LFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGDMFEKI 247
Query: 190 PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
P A+A K + H DED +KILK ++AI + G
Sbjct: 248 PSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG 282
|
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| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 71/157 (45%), Positives = 106/157 (67%)
Query: 72 SLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIF 131
++S WF+ +LT + T HG FW+F ++ + F+ MA+DS I+ S ++ E +F
Sbjct: 122 AMSEWFQNEDLTAFETAHGKNFWDFGAEDK-YGKNFDGVMAADS-ILVSKMLIPEFNYLF 179
Query: 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPP 191
EGL SLVDVGGG G+ ++ I+++FP +KCTV DLPHVVANL T+NL+++ GDMF+ +P
Sbjct: 180 EGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMFEKIPS 239
Query: 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
A+A L K + H DE+ +K+LK R+AI + GK
Sbjct: 240 ANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGK 276
|
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| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 67/172 (38%), Positives = 104/172 (60%)
Query: 67 KENPFS--LSSWFKGTE------LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIM 118
+++P S L++WF+ E + + ++G WE ++ IN FN AMA+DS +
Sbjct: 135 RDSPLSMGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFL 194
Query: 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD-- 176
++K E ++F G+ SLVDV GG G + I+ AFP +KCTVLDLPHVVA P +
Sbjct: 195 MQILLK-EFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIG 253
Query: 177 NLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
N++++ GDMF+ +PPA+ L K + H +++ +KILK ++AI S GK
Sbjct: 254 NVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRDAGGK 305
|
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| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 58/151 (38%), Positives = 82/151 (54%)
Query: 73 LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFE 132
+SS G+ + VHG W F NP ++ NEAMA D+ + V A C +F+
Sbjct: 151 VSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGA-CHGLFD 209
Query: 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPA 192
G+ ++VDVGGG G ++ + FP IK DLPHV+ D ++ + GDMF +P
Sbjct: 210 GVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGDMFDSIPAC 269
Query: 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASN 223
DA K V H GD+D +KILK +EA+ N
Sbjct: 270 DAIFIKWVLHDWGDKDCIKILKNCKEAVPPN 300
|
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| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 78/230 (33%), Positives = 116/230 (50%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCH--GRAITLSELMRLLVHSGCFNKTKVNGQEEAYGL 58
+F + KCAI+L I + I H + +TLSEL S + + + + L
Sbjct: 23 VFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLSEL------SSAVSASPSHLRRIMRFL 76
Query: 59 TASSTLLIKENPFS--LSSWFKGTELT---LWGTVHGIKFWEFLNQNPGINQRFNEAMAS 113
L KE P L++ + T L+ + +HG W F N +Q NEAMA
Sbjct: 77 VHQG--LFKEVPTKDGLATGYTNTPLSRRMMITKLHGKDLWAFAQDNLCHSQLINEAMAC 134
Query: 114 DSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP 173
D+ + V A C+ +F+G+ ++VDVGGG G I+ + FP IK DLPHV+
Sbjct: 135 DARRVVPRVAGA-CQGLFDGVATVVDVGGGTGETMGILVKEFPWIKGFNFDLPHVIEVAQ 193
Query: 174 ETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223
D ++ + GDMF +P +DA + K V H GD+D +KILK +EA+ N
Sbjct: 194 VLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKDCIKILKNCKEAVLPN 243
|
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| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 58/174 (33%), Positives = 97/174 (55%)
Query: 57 GLTASSTLLIKENPFSLSSWFKGTELTLWGTV-----HGIKFWEFLNQNPGINQRFNEAM 111
G++ ++ L+ ++ + SW+ + L G + +G+ +E+ +P N+ FNE M
Sbjct: 118 GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGM 177
Query: 112 ASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVAN 171
+ S I+T ++ E + FEGLG++VDVGGG G+ I+ A+P IK DLPHV++
Sbjct: 178 KNHSIIITKKLL--EVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISE 235
Query: 172 LPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
+ ++ GDMFQ VP DA L K + H DE +LK +A+ ++G+
Sbjct: 236 AQPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGK 289
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | FOMT1 | flavonoid o-methyltransferase related (359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 228 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 5e-53 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 4e-09 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-06 | |
| TIGR04325 | 235 | TIGR04325, MTase_LIC12133, putative methyltransfer | 0.003 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 5e-53
Identities = 74/192 (38%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 52 QEEAYGLTASSTLLIKEN--------------PFSLSSWFKGTE-----LTLWGTVHGIK 92
E YGLT +S LL+K P L SW + + G+
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMP 62
Query: 93 FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIIS 152
F+E+L +P N+ FN AMA+ S ++ ++ E F GL SLVDVGGG G+ + I
Sbjct: 63 FFEYLGADPEFNRVFNRAMAAHSRLVMKKIL--ETAFDFSGLSSLVDVGGGTGALAAAIV 120
Query: 153 EAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKI 212
A+P IK V DLPHV+A+ P D ++++ GD F+ VP ADA L K V H DED +KI
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKI 180
Query: 213 LKKRREAIASNG 224
LK+ EA+ G
Sbjct: 181 LKRCYEALPPGG 192
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 4e-09
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 113 SDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANL 172
S+++ +++ + +G+ ++DVGGG G S + + FP + T+L+LP + +
Sbjct: 132 SNAKFAIQLLLE---EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 188
Query: 173 PE-------TDNLKYIAGDMF-QFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
E D ++ IA D++ + P ADA LF + + ++ + KK +A+ S G
Sbjct: 189 NENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG 248
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 8 MSLKCAIELSIADIIHCHGRAITLSEL 34
M LKCAIEL I DII HG+ ++ SEL
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSEL 27
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPET------DNLKYIAGDM-- 185
++D+G G GS + ++ FPG + T +DL P ++ E + ++ GD
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 186 -FQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
+ DA VF G G D L++L + G
Sbjct: 63 ALDLLEGFDA-----VFIGGGGGDLLELLDALASLLKPGG 97
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|234544 TIGR04325, MTase_LIC12133, putative methyltransferase, LIC12133 family | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKC---TVLDLPHVV----ANLPETDNLKYIAGD 184
EG ++D GG GS P TV++ P VV + D L + D
Sbjct: 64 EGRLRVLDFGGSLGSTYYQYKRFLPLPDGLRWTVVEQPEVVEAGRRLAEDGDRLSFY-TD 122
Query: 185 MFQFVPPADAFLFKLVFHGLGD--EDGLKILKKRREAI 220
+ P D L V L D + L +L I
Sbjct: 123 LEDAEGP-DVVLLSGVLQYLEDPLAELLALLAYNPRYI 159
|
Members of this family tend to occur next to glycosyltransferases and other characteristic enzymes of O-antigen biosynthetic regions. The founding member is LIC12133 from Leptospira interrogans serovar Copenhageni. PSI-BLAST reveals distant homology to known SAM-dependent methyltransferases, as in pfam13489. Length = 235 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.66 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.61 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.59 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.58 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.56 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.56 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.55 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.54 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.54 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.54 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.48 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.47 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.46 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.46 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.46 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.45 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.41 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.41 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.41 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.4 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.4 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.39 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.38 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.38 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.37 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.37 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.37 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.37 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.35 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.35 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.34 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.34 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.34 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.33 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.33 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.31 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.29 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.28 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.28 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.28 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.28 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.27 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.25 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.23 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.23 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.2 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.2 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.2 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.18 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.16 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.13 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.13 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.13 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.12 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.11 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.1 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.09 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.08 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.08 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.08 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.07 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.06 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.04 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.04 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.98 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.98 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.97 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.97 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.94 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.94 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.92 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.92 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.91 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.91 | |
| PLN02366 | 308 | spermidine synthase | 98.91 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.91 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.89 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.89 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.89 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.88 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.88 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.87 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.85 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.85 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.85 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.85 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.83 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.82 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.78 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.78 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.77 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.77 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.73 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.7 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.69 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.66 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.66 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.62 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.62 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.59 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.59 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.58 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.57 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.57 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.56 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.55 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.54 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.54 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.53 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.52 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.52 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.51 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.49 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.49 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.48 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.47 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.46 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.46 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.46 | |
| PLN02823 | 336 | spermine synthase | 98.42 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.41 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.41 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.4 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.39 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.38 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.38 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.36 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.32 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.3 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.3 | |
| PLN02476 | 278 | O-methyltransferase | 98.27 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.27 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.26 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.25 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.24 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.24 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.19 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.19 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.1 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.07 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.06 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.06 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.05 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.05 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.03 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.03 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.03 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.02 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.0 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.95 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.94 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 97.9 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.86 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.82 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.81 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.79 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.79 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.74 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.73 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.71 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.67 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.63 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.63 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.61 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.51 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.5 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.49 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.45 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.43 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.4 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.4 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.35 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.35 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.33 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.33 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.3 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.28 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.28 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.25 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.25 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.22 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.14 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.11 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.02 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.99 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.97 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.9 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.81 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.72 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.7 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.66 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.55 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.54 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.54 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.48 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.45 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.24 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 96.19 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.17 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.15 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.04 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.04 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.99 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.99 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.82 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.79 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.75 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.72 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.38 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.33 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 95.27 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.15 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 95.13 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.95 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.92 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.91 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.89 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.73 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.64 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.6 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 94.42 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 94.33 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.26 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.25 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.18 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.17 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 93.92 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.84 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.76 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.68 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.22 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.93 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 92.84 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 92.53 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.44 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 91.96 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 91.95 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 91.37 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 91.28 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.21 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 90.77 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 90.41 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 90.19 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.23 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 88.9 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 87.57 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.43 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 86.73 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 86.57 | |
| PF14338 | 92 | Mrr_N: Mrr N-terminal domain | 86.55 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.45 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 86.21 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.06 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.99 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 85.96 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 85.88 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 84.66 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.45 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 84.26 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 84.04 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 83.9 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 83.25 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 82.71 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 81.15 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 80.29 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 80.2 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=241.73 Aligned_cols=167 Identities=34% Similarity=0.670 Sum_probs=146.2
Q ss_pred CCeEeCChhchhhhhCCC-CC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHH
Q 038208 53 EEAYGLTASSTLLIKENP-FS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMA 112 (228)
Q Consensus 53 ~~~~~~t~~~~~l~~~~~-~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 112 (228)
+++|+||++|+.|+.+++ .+ |.++++++. ++|+..+|.++|+|+.++|+..+.|+++|+
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776655 22 667777776 789888999999999999999999999999
Q ss_pred hccchhH-HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCC
Q 038208 113 SDSEIMT-SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~ 191 (228)
..+.... ..++. .++ +++..+|||||||+|.++.+++++||+++++++|+|++++.+++.+||++++|||++++|.
T Consensus 82 ~~~~~~~~~~~~~-~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLE-AFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHH-HST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhc-ccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9888777 67777 777 7888999999999999999999999999999999999999988899999999999998999
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
+|+|++++|||+|+|++|.+||++++++|+||
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=235.11 Aligned_cols=219 Identities=29% Similarity=0.440 Sum_probs=186.8
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH----------------HHHHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE----------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e----------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
+++..+++|.+|+||||||+|+..++|..++- +||.|+++++++....+ .. .|++++.++++
T Consensus 15 ~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~ 92 (342)
T KOG3178|consen 15 NGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYF 92 (342)
T ss_pred hhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhh
Confidence 67889999999999999999998642322221 99999999999987521 11 79999999966
Q ss_pred hhC-CCCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHH
Q 038208 66 IKE-NPFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKA 125 (228)
Q Consensus 66 ~~~-~~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~ 125 (228)
.++ +..+ +.+.+..++ .+|..++|+.+|+|...++.....|+++|...+....+.+++
T Consensus 93 l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~- 170 (342)
T KOG3178|consen 93 LKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILE- 170 (342)
T ss_pred eecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhh-
Confidence 643 3333 334444554 578889998899999999988899999999999888878888
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPET-DNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~-~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
.+. .++.....||||||.|..+..++..||+++++.+|+|.+++.+... +.|+.+.||+|.+.|..|+|++.||||||
T Consensus 171 ~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 171 VYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDW 249 (342)
T ss_pred hhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccC
Confidence 776 4788999999999999999999999999999999999999988875 78999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++|.+||+|++++|+|||+
T Consensus 250 tDedcvkiLknC~~sL~~~Gk 270 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGK 270 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCE
Confidence 999999999999999999974
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=234.51 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhhC-C
Q 038208 5 LSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKE-N 69 (228)
Q Consensus 5 ~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~-~ 69 (228)
+...+|++|+++||||+|++ +|.|++| |||+|+++|+|+++ ++.|++|+.++.+..+ +
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~ 74 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTP 74 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCc
Confidence 45789999999999999987 7999998 99999999999997 5899999999855543 3
Q ss_pred CC---C------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHh-ccchhHHHHHHHhh
Q 038208 70 PF---S------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMAS-DSEIMTSFVVKAEC 127 (228)
Q Consensus 70 ~~---~------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~-~~~~~~~~~~~~~~ 127 (228)
+. + +.+.++. .++|. ..+++....++. ..|...|.. ......+.+++ .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~--~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~ 145 (306)
T TIGR02716 75 KEPNLHQTPVAKAMAFLADDFYMGLSQAVRG--QKNFK-----GQVPYPPVTRED-NLYFEEIHRSNAKFAIQLLLE-EA 145 (306)
T ss_pred cchhhhcCchHHHHHHHHHHHHHhHHHHhcC--Ccccc-----cccCCCCCCHHH-HHhHHHHHHhcchhHHHHHHH-Hc
Confidence 31 1 1111111 11221 112222222222 345555543 33344455566 55
Q ss_pred hhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehh
Q 038208 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 128 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~ 199 (228)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|++|+|++++
T Consensus 146 ~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 146 K--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223 (306)
T ss_pred C--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence 5 67788999999999999999999999999999999999887653 5789999999997 677899999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|+|+++++.++|++++++|+|||.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~ 249 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGR 249 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999963
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=112.62 Aligned_cols=92 Identities=25% Similarity=0.498 Sum_probs=79.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-CC-CCceEeeehh-hh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDM-FQ-FV-PPADAFLFKL-VF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~-~~-~~-p~~D~v~~~~-vl 201 (228)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+||+++++|+ .. +. +.||+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 888877653 68999999999 33 33 3599999999 67
Q ss_pred cCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
|++. .++..++|+++++.|+|||.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcE
Confidence 7554 46789999999999999964
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=123.80 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=83.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA--FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~v 200 (228)
.+..+|||||||+|..+..+++. +|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +.+.+|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999999884 68999999999 999988764 3489999999987 6667999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++++...++++++++|+|||.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGA 159 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCE
Confidence 9999988889999999999999974
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=121.54 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCC--ceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh 202 (228)
++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...|+|+.+|+.+ |+|+ ||+|++++.|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 578999999999999999999999999999999 899998875 2239999999998 8884 99999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+|. .+.|++++|+|||||.
T Consensus 131 nv~d~--~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 131 NVTDI--DKALKEMYRVLKPGGR 151 (238)
T ss_pred cCCCH--HHHHHHHHHhhcCCeE
Confidence 99977 6899999999999973
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=135.80 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=103.3
Q ss_pred CChhhhcccCccHHHHHHHHHHhccchh--HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hH
Q 038208 91 IKFWEFLNQNPGINQRFNEAMASDSEIM--TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PH 167 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~ 167 (228)
..+|+++..+++..++|.+.|....... ...... .++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~-i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRI-ILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHH-Hhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 4678888888888888988776543331 111122 333 44678999999999999999999999999999999 77
Q ss_pred HHhcCCC-----CCCeEEEeCCCCC-C--CC--CceEeeehhhhcCC-----------ChhHHHHHHHHHHHHhccCCC
Q 038208 168 VVANLPE-----TDNLKYIAGDMFQ-F--VP--PADAFLFKLVFHGL-----------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 168 ~i~~a~~-----~~rv~~~~gD~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++.+++ ..+++++++|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|||||.
T Consensus 454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence 8877653 3578889999876 3 44 39999999999976 356789999999999999974
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=123.77 Aligned_cols=100 Identities=21% Similarity=0.351 Sum_probs=85.0
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CceEee
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP--PADAFL 196 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p--~~D~v~ 196 (228)
..+++ .+. .....+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+++++.+|+.+..+ .||+|+
T Consensus 19 ~~ll~-~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLA-RVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 44566 554 45678999999999999999999999999999999 899988875 479999999865322 599999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.++|++++. .++++++++.|||||.
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAPGSW 121 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCCCcE
Confidence 99999988865 6899999999999974
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=122.61 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=83.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~v 200 (228)
....+|||||||+|.++..+++++ |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 899987764 3579999999987 6677999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++++...+|++++++|+|||.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 9999988889999999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=107.11 Aligned_cols=88 Identities=19% Similarity=0.417 Sum_probs=73.9
Q ss_pred EEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeeh-hhhcC
Q 038208 137 LVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFK-LVFHG 203 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~-~vlh~ 203 (228)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++ ..+++++++|+.+ ++. .+|+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 889887764 3589999999987 433 59999995 55999
Q ss_pred CChhHHHHHHHHHHHHhccCC
Q 038208 204 LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG 224 (228)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999996
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-16 Score=109.83 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=58.3
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCCC-C-CceEeeehhhhcCCC
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TD---NLKYIAGDMFQFV-P-PADAFLFKLVFHGLG 205 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~---rv~~~~gD~~~~~-p-~~D~v~~~~vlh~~~ 205 (228)
||||||+|.++..+++++|..+++++|+ |.+++.+++ .. ++++...|..+.. + .||+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899987775 22 3444555554433 3 599999999999994
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+...+|+++++.|+|||.
T Consensus 81 --~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-E
T ss_pred --hHHHHHHHHHHHcCCCCC
Confidence 446999999999999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=121.72 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCC--ceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPP--ADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~--~D~v~~~~ 199 (228)
..+..+|||||||+|..+..++++. |+.+++++|+ +.+++.+++ ..+|+++++|..+ |+|+ ||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999885 6789999999 899998874 3589999999988 7874 99999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+++|. .+.|++++++|||||.
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGR 148 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEE
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeE
Confidence 99999986 5789999999999974
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=117.85 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=86.3
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceE
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADA 194 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~ 194 (228)
...++. .++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+..+ .+|+
T Consensus 20 ~~~ll~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 20 ARDLLA-RVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHHh-hCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 345555 554 56678999999999999999999999999999999 888988875 5689999999976323 5999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++.++|+.+|. .++|++++++|+|||.
T Consensus 97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~ 125 (258)
T PRK01683 97 IFANASLQWLPDH--LELFPRLVSLLAPGGV 125 (258)
T ss_pred EEEccChhhCCCH--HHHHHHHHHhcCCCcE
Confidence 9999999988765 6899999999999974
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=114.44 Aligned_cols=102 Identities=21% Similarity=0.376 Sum_probs=89.9
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceE
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADA 194 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~ 194 (228)
+..++. .++ .....+|+|+|||+|..+..+++++|+.+++++|- |.|++.|+. .++++|..+|+.+-.| .+|+
T Consensus 19 a~dLla-~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 19 ARDLLA-RVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHHHh-hCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence 355666 666 67889999999999999999999999999999998 999998875 8899999999987434 6999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.+-+||..+|- .++|.++...|.|||+
T Consensus 96 lfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 96 LFANAVLQWLPDH--PELLPRLVSQLAPGGV 124 (257)
T ss_pred hhhhhhhhhcccc--HHHHHHHHHhhCCCce
Confidence 9999999977765 7899999999999986
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=101.64 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=73.3
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHH
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~ 210 (228)
||||||+|..+..++++ +..+++++|. +.+++.+++ ..+++++.+|+.+ ++|+ +|+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8999999999 777877764 5678899999988 6763 9999999999999 4458
Q ss_pred HHHHHHHHHhccCCC
Q 038208 211 KILKKRREAIASNGE 225 (228)
Q Consensus 211 ~il~~~~~aL~pgG~ 225 (228)
+++++++++|||||.
T Consensus 78 ~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 78 AALREIYRVLKPGGR 92 (95)
T ss_dssp HHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHcCcCeE
Confidence 999999999999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=118.33 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=84.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~ 191 (228)
..++. .+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .++++++.+|+.+ ++| .
T Consensus 42 ~~~l~-~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILS-DIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 34455 444 5677899999999999999998875 679999999 788776653 4689999999987 666 3
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..+++++++++...+|+++++.|||||.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 9999999998888877778999999999999974
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=113.98 Aligned_cols=101 Identities=26% Similarity=0.286 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p- 190 (228)
+.+++ .+. .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++ ..++++...|+.+ +++
T Consensus 20 ~~l~~-~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 20 SEVLE-AVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred HHHHH-hcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 44555 554 445689999999999999999986 568999999 888876653 3468899999976 444
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++++...++++++++|+|||.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 49999999999999988889999999999999985
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-14 Score=116.51 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--ADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D~v~ 196 (228)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +++++.+++ .++++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456899999999999999999875 6789999999 899887753 3479999999987 6663 99999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+..++|++++. .++|++++++|||||.
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSR 177 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcE
Confidence 99999999876 6799999999999974
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=109.72 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=79.2
Q ss_pred CCCeEEEecCCCcHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIIS-EAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~~v 200 (228)
+..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.++. .++++|..+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5588999999999 899988764 4589999999998 4 43 6999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+|+++.+.|+|||.
T Consensus 83 l~~~~~~--~~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 83 LHHFPDP--EKVLKNIIRLLKPGGI 105 (152)
T ss_dssp GGGTSHH--HHHHHHHHHHEEEEEE
T ss_pred hhhccCH--HHHHHHHHHHcCCCcE
Confidence 9999887 5889999999999974
|
... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=114.23 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCcH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC---------------------------
Q 038208 133 GLGSLVDVGGGNGS----FSRIISEAFP-----GIKCTVLDL-PHVVANLPET--------------------------- 175 (228)
Q Consensus 133 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-p~~i~~a~~~--------------------------- 175 (228)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5666777665 578999999 8899877651
Q ss_pred ------CCeEEEeCCCCCC-CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 176 ------DNLKYIAGDMFQF-VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 176 ------~rv~~~~gD~~~~-~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|..+|+.++ .| .||+|+++++||++++++..+++++++++|+|||.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence 3799999999883 33 49999999999999999889999999999999974
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=117.58 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 777776543 3689999999987 665 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+++|. .+++++++++|||||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGR 218 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcE
Confidence 9999875 6899999999999974
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=108.14 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG------IKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--AD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D 193 (228)
...++|||+||||..+..|++.-+. .+++++|+ |++++.+++ ..++.++++|..+ |+|. +|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 3579999999999999999998877 78999999 999976542 4569999999988 8884 99
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.|++..-+-+|++. .+.|++++++|||||
T Consensus 180 ~yTiafGIRN~th~--~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 180 AYTIAFGIRNVTHI--QKALREAYRVLKPGG 208 (296)
T ss_pred eEEEecceecCCCH--HHHHHHHHHhcCCCc
Confidence 99999999999988 689999999999996
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=110.04 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=79.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
.....+|||||||+|.++..+++.. |+.+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 4556899999999999999999986 6789999999 888876653 4589999999977 555 399999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. .++|+++.+.|+|||.
T Consensus 123 ~l~~~~~~--~~~l~~~~~~Lk~gG~ 146 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVVKPGGK 146 (231)
T ss_pred ccccCCCH--HHHHHHHHHHcCcCeE
Confidence 99988776 5799999999999974
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=107.42 Aligned_cols=101 Identities=23% Similarity=0.189 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~ 191 (228)
..+++ .+. .....+|||||||+|..+..++++ ..+++++|+ |.+++.+++ .-++++...|+.. +++ .
T Consensus 20 ~~l~~-~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 20 SAVRE-AVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED 94 (195)
T ss_pred HHHHH-Hhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence 34445 444 345679999999999999999986 568999999 888876543 2247788888765 344 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|++..++|++++++...+++++++.|+|||.
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999888888999999999999974
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=108.18 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=80.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d 206 (228)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+++++..+|+.++++ .||+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45677999999999999999999889999999999 899998876 5678899999988655 4999999999999988
Q ss_pred hHHHHHHHHHHHHhc
Q 038208 207 EDGLKILKKRREAIA 221 (228)
Q Consensus 207 ~~~~~il~~~~~aL~ 221 (228)
++..++++++++.++
T Consensus 121 ~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 121 DNLPTAYRELYRCSN 135 (204)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888999999999873
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-13 Score=110.01 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=77.3
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhhcCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~ 204 (228)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777766553 4689999999976 455 49999999999998
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++. ..+|+++++.|+|||.
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGH 99 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCE
Confidence 775 6899999999999974
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=112.21 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=76.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--FVP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~~p--~~D~v~~~~ 199 (228)
+...+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 568999999 889887764 3689999999865 233 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||++++. ..+|+++++.|||||.
T Consensus 121 vl~~~~~~--~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRPGGA 144 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCCCeE
Confidence 99998876 5799999999999975
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=111.62 Aligned_cols=92 Identities=13% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCcHHHH--HHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSR--IISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV---PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~---p~~D~v~~~ 198 (228)
.+++|+|||||.|-++. .+++.+|+.+++++|+ |++++.|++ .+|++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 67899999999885433 3445689999999999 888876653 478999999998732 359999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||+|..++..++|+++++.|+|||.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcE
Confidence 99999877779999999999999974
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-13 Score=113.60 Aligned_cols=91 Identities=26% Similarity=0.301 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~ 205 (228)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 888887764 4579999999977 555 399999999999999
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+. .++|+++++.|+|||.
T Consensus 193 d~--~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGK 210 (340)
T ss_pred CH--HHHHHHHHHhcCCCcE
Confidence 87 4689999999999975
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=106.90 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccch------hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-
Q 038208 103 INQRFNEAMASDSEI------MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE- 174 (228)
Q Consensus 103 ~~~~f~~~m~~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~- 174 (228)
..+.|.++...+... .+..+++ .++ .....+|||||||+|.++..+.+. ..+++++|+ +.+++.+++
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLA-MLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHH-hcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhh
Confidence 445666665554431 2233344 333 234679999999999999988774 578999999 889988765
Q ss_pred CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...+.++.+|+.+ +++ .||+|+++.++|..+|. ..+|+++++.|+|||.
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGV 135 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeE
Confidence 3456789999977 555 39999999999866654 6899999999999974
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=104.43 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=95.0
Q ss_pred hhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~ 171 (228)
.|+.+..++.....+...|..........+++ .+.....+..+|||||||+|.++..+++. +.+++++|+ |.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLD-WLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM 92 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 35555555555556666664433333444444 33311235789999999999999999886 458999999 888887
Q ss_pred CCC-------CCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 172 LPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 172 a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++ .+++++..+|+.+....||+|++..+++++++++...+++++++.+++++
T Consensus 93 a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 93 ARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred HHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 764 25899999999763356999999999999988878889999999888764
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=117.21 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
+.+..+|||||||+|..+..+++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 4556799999999999999999876 779999999 788876643 4589999999987 565 39999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++++. .++|++++++|+|||.
T Consensus 343 ~h~~d~--~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 343 LHIQDK--PALFRSFFKWLKPGGK 364 (475)
T ss_pred cccCCH--HHHHHHHHHHcCCCeE
Confidence 999876 5899999999999974
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=105.73 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d 206 (228)
...+|||||||+|.++..+++.+|..+++++|+ +.++..++. .++++++.+|+.+ +++ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 777766654 4589999999977 544 3999999999998766
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+|+++++.|+|||.
T Consensus 114 ~--~~~l~~~~~~L~~~G~ 130 (240)
T TIGR02072 114 L--SQALSELARVLKPGGL 130 (240)
T ss_pred H--HHHHHHHHHHcCCCcE
Confidence 5 5799999999999974
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=104.82 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=79.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
+....+|||||||+|.++..+++.+ |..+++++|+ +..++.+++ ..++++..+|+.+ +++ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5567899999999999999999998 7889999999 777765543 4679999999876 554 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+++++++.|+|||.
T Consensus 97 ~~~~~~~--~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 97 LQHLEDP--ARALAEIARVLRPGGR 119 (241)
T ss_pred hhccCCH--HHHHHHHHHHhcCCcE
Confidence 9999876 6789999999999973
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=103.30 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~ 207 (228)
....+|||||||+|.++..+++++ +.+++++|+ +++++.+++. ..++.+|+.+ |++ .||+|++..+||+++|.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 346899999999999999999987 679999999 8999988753 3467888877 666 39999999999998876
Q ss_pred HHHHHHHHHHHHhccC
Q 038208 208 DGLKILKKRREAIASN 223 (228)
Q Consensus 208 ~~~~il~~~~~aL~pg 223 (228)
.+.|++++++|||.
T Consensus 127 --~~~l~e~~RvLkp~ 140 (226)
T PRK05785 127 --EKVIAEFTRVSRKQ 140 (226)
T ss_pred --HHHHHHHHHHhcCc
Confidence 67999999999994
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=9e-13 Score=103.01 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=74.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
-....+++|+|||.|.++..|+.++ -+++++|+ +..++.+++ .++|+++..|+-+..| .||+|+++-++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556899999999999999999996 46899999 888888764 6799999999987656 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHHhccCCC
Q 038208 204 LGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
+.+ ++...+++++.++|+|||.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCE
Confidence 986 6788999999999999973
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=108.40 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~ 203 (228)
....+|||||||+|..+..++++ +.+++++|. +.+++.+++ .-++++...|+.. +++ .||+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999986 578999999 788776543 3378889999876 344 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++++...+++++++.|+|||.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcE
Confidence 9988889999999999999974
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=110.94 Aligned_cols=92 Identities=27% Similarity=0.417 Sum_probs=77.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC--CceEeeehhhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQFVP--PADAFLFKLVF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~~p--~~D~v~~~~vl 201 (228)
..+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++..|.++.++ .||+|+++-.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 46999999999999999999999999999999 778877653 2478999999987553 49999997665
Q ss_pred c---CCChhHHHHHHHHHHHHhccCCC
Q 038208 202 H---GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h---~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
| .++++...++++.+++.|+|||.
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 5 35667778999999999999974
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=111.56 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+|+++++|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4678999999 888887763 2489999999865 433 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++|. ..+|+++++.|||||.
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGA 230 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcE
Confidence 999987 5799999999999974
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=110.54 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQ-FVP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh 202 (228)
...+|||||||+|.++..+++..+. +++++|. +.++.+++ ...+++++.+|+.+ +.+ .||+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4579999999999999999998766 5999998 55554321 14589999999976 544 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+..+. ..+|+++++.|+|||.
T Consensus 201 H~~dp--~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVPGGE 221 (322)
T ss_pred ccCCH--HHHHHHHHHhcCCCcE
Confidence 98776 5799999999999974
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=102.86 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
.+..+|||||||+|.++..+++. .|+.+++++|+ |.+++.+++ ..++++...|... +.+ .+|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 46779999999 899988765 3456666665433 223 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhc
Q 038208 201 FHGLGDEDGLKILKKRREAIA 221 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~ 221 (228)
||++++++...+|+++++.++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 999999888899999999987
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=100.59 Aligned_cols=90 Identities=26% Similarity=0.374 Sum_probs=74.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|...+++ .+|+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45678999999999999999999999999999999 888877653 3579999999865555 499999876654
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ ..+++++++.|+|||.
T Consensus 109 ~~-----~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHPGGR 126 (187)
T ss_pred CH-----HHHHHHHHHhcCCCeE
Confidence 33 4689999999999974
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=108.22 Aligned_cols=94 Identities=17% Similarity=0.299 Sum_probs=76.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-C-----ceE
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF--VP-P-----ADA 194 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~--~p-~-----~D~ 194 (228)
....+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++ ..+|.++++|+.+. ++ . ..+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4557899999999999999999987 689999999 788766643 24577889999763 33 2 235
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++..++|+++++++..+|++++++|+|||.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5667889999999999999999999999973
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-12 Score=98.13 Aligned_cols=93 Identities=24% Similarity=0.427 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
...++||+|||+|..+..+++++|+.+++++|+ +.+++.+++ .+.++++..|.+++.+ .||+|+++-.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888877654 2339999999999665 4999999988886
Q ss_pred CCh---hHHHHHHHHHHHHhccCCC
Q 038208 204 LGD---EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d---~~~~~il~~~~~aL~pgG~ 225 (228)
-.+ +-..++++++.+.|+|||.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCE
Confidence 654 4568899999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-12 Score=105.54 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+....+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999988777764 6678999999 888888764 3689999999976 555 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. .++++++++.|+|||.
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGR 178 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcE
Confidence 99988765 5799999999999974
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=100.09 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-C---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-F--- 188 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~--- 188 (228)
....+|||+|||.|..+..++++ +.+++++|+ |..++.+. +..+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 778999999 77777531 13579999999988 3
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.||.|+-+.++|+++++...+.++++.++|+|||.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 2349999999999999999999999999999999974
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-12 Score=106.86 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=73.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CC-CCceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQ-FV-PPADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~-~~-p~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..+++..+. +++++|. +.++.+++ ...++.+...|+.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34689999999999999999988764 7999998 65654321 24688888888865 32 359999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++. ...|++++++|+|||.
T Consensus 199 ~H~~dp--~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 199 YHRKSP--LEHLKQLKHQLVIKGE 220 (314)
T ss_pred hccCCH--HHHHHHHHHhcCCCCE
Confidence 999876 5799999999999974
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-12 Score=111.85 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ---FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~---~~p- 190 (228)
..+++ .++ ..+..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ .++++++++|+.+ ++|
T Consensus 27 ~~il~-~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILS-LLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHh-hcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 44445 444 3356799999999999999999985 47899999 888876542 4689999999964 344
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++++...+|+++++.|+|||.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGY 137 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeE
Confidence 39999999999999998889999999999999974
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=99.23 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
.+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 3457999999999999999999998 789999999 777766553 3579999999977 433 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. ..+|+++.+.|+|||.
T Consensus 130 ~l~~~~~~--~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 130 GLRNVPDI--DKALREMYRVLKPGGR 153 (239)
T ss_pred ccccCCCH--HHHHHHHHHhccCCcE
Confidence 99998875 6789999999999974
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=105.28 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CceEeeehhhhcCC--
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-PADAFLFKLVFHGL-- 204 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~-- 204 (228)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .-..+++..|.++..+ .||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 46899999999999999999999999999999 788877754 2346788889877555 49999999999864
Q ss_pred -ChhHHHHHHHHHHHHhccCCC
Q 038208 205 -GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 -~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+...++++++.+.|+|||.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~ 298 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGE 298 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCE
Confidence 345678999999999999974
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.5e-12 Score=98.76 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-CCceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV-PPADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~-p~~D~v~~~~vlh~ 203 (228)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ +. ..||+|++.. +|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 367999999999999999999999999999999 676665442 3579999999976 22 3599998876 544
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ..+++.+++.|+|||.
T Consensus 121 ~-----~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGY 137 (181)
T ss_pred H-----HHHHHHHHHhcCCCCE
Confidence 3 3578888999999974
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=87.86 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FV-PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~-p~~D~v~~~~ 199 (228)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.. .. +.+|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34567999999999999999999999999999999 777776553 4679999998764 12 2599999866
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+ ...++++++++.|+|||.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRPGGR 117 (124)
T ss_pred cch-----hHHHHHHHHHHHcCCCCE
Confidence 443 345899999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=98.95 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~ 203 (228)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .+++++..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999875 45999999 888877764 25899999995333345999999999999
Q ss_pred CChhHHHHHHHHHHHHhccC
Q 038208 204 LGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pg 223 (228)
+++++...+++++.+.++++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~ 159 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGS 159 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCe
Confidence 99998899999999877554
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=97.24 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=78.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~ 191 (228)
+.+++ .++ .-+..++||||||.|..+..++++ +..++++|. +..++.++. .-.|+....|+.+ .++ .
T Consensus 20 s~v~~-a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~ 94 (192)
T PF03848_consen 20 SEVLE-AVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEE 94 (192)
T ss_dssp HHHHH-HCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTT
T ss_pred HHHHH-HHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCC
Confidence 34555 555 446789999999999999999998 778999999 666655432 4459999999977 555 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|++..|+++++.+...++++++.++++|||.
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGY 128 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEE
Confidence 9999999999999999999999999999999973
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=94.11 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=67.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CC--CCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FV--PPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~--p~~D~v~~~~vlh~~~d 206 (228)
.....+|||||||+|.++..+++... +++++|+ +.+++. .++.....+... +. ..||+|++..+||+.+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977643 9999999 777776 233333332223 22 25999999999999996
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+|+++++.|||||.
T Consensus 94 ~--~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 94 P--EEFLKELSRLLKPGGY 110 (161)
T ss_dssp H--HHHHHHHHHCEEEEEE
T ss_pred H--HHHHHHHHHhcCCCCE
Confidence 4 7999999999999974
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=103.34 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||-|.++..+++++ +++++++.+ ++..+.++ ..+++++...|+.+--+.
T Consensus 52 ~~~~~-~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 52 DLLCE-KLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHT-TTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHH-HhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 33455 554 6788999999999999999999998 899999999 55444332 267899999999763337
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.|++..++.+..++.-..+++++.+.|+|||.
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 9999999999999988889999999999999974
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=97.70 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+|+|++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 45789999999999999999999987 79999999 777766553 3579999999987 444 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.++. ..+++++++.|+|||.
T Consensus 118 ~~~~~--~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 118 NVTDI--QKALREMYRVLKPGGR 138 (223)
T ss_pred CcccH--HHHHHHHHHHcCCCcE
Confidence 88764 6899999999999974
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=96.64 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh 202 (228)
+...+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|+++.+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 788876653 3459999999977 323 4999998752
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ....+++++++.|+|||.
T Consensus 122 --~--~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKPGGR 140 (187)
T ss_pred --c--CHHHHHHHHHHhcCCCeE
Confidence 1 235789999999999974
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-12 Score=100.50 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC--CeEEEeCCCCC-CC--CCceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TD--NLKYIAGDMFQ-FV--PPADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~--rv~~~~gD~~~-~~--p~~D~v~~~~vlh~ 203 (228)
...+|||||||-|.++..+++.. .++++.|+ +..|+.|+. .. .+++.+....+ .. ..||+|++..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46799999999999999999985 88999999 888888774 22 34455555544 22 35999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|++ .+++.+.+.+||||+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~ 156 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGI 156 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcE
Confidence 99995 599999999999985
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=98.79 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDM-FQ-F--VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~-~~-~--~p--~~D~v~~~~ 199 (228)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 888876653 36899999999 33 3 43 399998876
Q ss_pred hhcCCCh------hHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
..+.... .....+|+++++.|+|||.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence 5432211 1236789999999999974
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=104.11 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=78.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d 206 (228)
+.+..+|||||||+|.++..+++++ +.+++++|+ +++++.+++ ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 4567899999999999999999876 679999999 888877664 33588888888653235999999999999888
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++++++.|||||.
T Consensus 244 ~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred HHHHHHHHHHHHHcCCCcE
Confidence 7778999999999999974
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-11 Score=97.01 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F---VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~---~p--~~D~v~~~~ 199 (228)
...++||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 467999999999999999999999999999999 778776643 3589999999965 1 34 388888776
Q ss_pred hhcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
..+ |+... ...+++++++.|+|||.
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGV 127 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCE
Confidence 543 43321 14689999999999975
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=99.28 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=87.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||-|.+++.++++| +++++++++ ++..+.+++ ..+|++.-.|+....+.
T Consensus 62 ~~~~~-kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 62 DLILE-KLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHH-hcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 34455 565 7889999999999999999999999 999999999 666555443 56899999999764444
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||-|++.-+++++..+.-...++++++.|+|||.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCce
Confidence 9999999999999998889999999999999975
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=94.28 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQF---- 188 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~~---- 188 (228)
.+..+|||+|||.|..+..|+++ +.+++++|+ |..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 778999999 77776431 136799999999883
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.||+|+-+.++|+++++...+.++++.+.|+|||.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 2358999999999999999999999999999999975
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=92.57 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CceEeeehhhhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~ 204 (228)
.+..+|||+|||+|.++..++++.+ +++++|+ |.+++.+++ ..+++++.+|+.+..+ .||+|+++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 888877664 3468899999977433 59999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHHhccCCC
Q 038208 205 GDE-------------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~-------------------~~~~il~~~~~aL~pgG~ 225 (228)
+++ ....+|+++.+.|+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 542 135789999999999974
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-11 Score=99.40 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------C----CCeEEEeCCCCCCCCCceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------T----DNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~----~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
..+|||||||.|.++..|++. ..+++++|. +.+++.|++ . -|+++.+.|.....+.||.|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 367999999999999999998 478999999 889988764 2 2588888888665566999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|..|. ..+++.+.+.|||||.
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGR 190 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCc
Confidence 9999877 6899999999999964
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=96.19 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=82.4
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCC-c
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVPP-A 192 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p~-~ 192 (228)
-+++ .++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.+++ .++..+...|.+++.++ |
T Consensus 149 lLl~-~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 149 LLLE-TLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHH-hCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 3455 665 34445999999999999999999999999999999 677877775 23336778888887664 9
Q ss_pred eEeeehhhhcCC---ChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGL---GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~---~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+++=.+|.= .+.-..+|++.+++.|++||+
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 999999999964 344556999999999999974
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=97.46 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehh---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKL--- 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~--- 199 (228)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|++++++ .+|+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 356899999999999999999999999999999 888887764 3589999999988665 499999751
Q ss_pred ----------hhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 200 ----------VFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 ----------vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
.+++.|. +....+++++.+.|+|||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1121111 2346889999999999974
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=93.60 Aligned_cols=93 Identities=22% Similarity=0.377 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhhc-
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVFH- 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh- 202 (228)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|++++++ .+|+|+++-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446899999999999999999999999999999 888876653 3479999999988654 499998853322
Q ss_pred -----CCChhH------------------HHHHHHHHHHHhccCCC
Q 038208 203 -----GLGDED------------------GLKILKKRREAIASNGE 225 (228)
Q Consensus 203 -----~~~d~~------------------~~~il~~~~~aL~pgG~ 225 (228)
.+..+. ...+++++.+.|+|||.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 222221 24789999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=97.58 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=73.4
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehh-----
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKL----- 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~----- 199 (228)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++.+| .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 3579999999987655 499999751
Q ss_pred --------hhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 200 --------VFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 --------vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
..++.|. +....+++++.+.|+|||.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence 1122221 2346889999999999974
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-10 Score=90.85 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CC-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA----NLPETDNLKYIAGDMFQF-----VP-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~----~a~~~~rv~~~~gD~~~~-----~p-~~D~v~~~~ 199 (228)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..+|.++.+|..++ ++ .+|+++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~--- 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY--- 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence 45678999999999999999999988778999999 76665 344457899999998653 22 388887
Q ss_pred hhcCCChh-HHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
|+.++. ....+|+++++.|||||.
T Consensus 147 --~d~~~p~~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 147 --QDVAQPNQAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred --ECCCChhHHHHHHHHHHHhcCCCcE
Confidence 444433 335678999999999974
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=96.75 Aligned_cols=93 Identities=23% Similarity=0.387 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC-CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVP-PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p-~~D~v~~~~ 199 (228)
+.+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999987763 3789999999865 234 499998752
Q ss_pred hhc--CCChh-HHHHHHHHHHHHhccCCC
Q 038208 200 VFH--GLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh--~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
.+ ..+.. ....+++++++.|+|||+
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGv 172 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGI 172 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcE
Confidence 22 12211 126899999999999975
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-10 Score=90.57 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=69.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~ 198 (228)
..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+.++ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 34567999999999999999998864 568999999 788876653 2469999999987433 49999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+++.+ +++.+.|+|||.
T Consensus 150 ~~~~~~~--------~~l~~~L~~gG~ 168 (205)
T PRK13944 150 AAASTIP--------SALVRQLKDGGV 168 (205)
T ss_pred cCcchhh--------HHHHHhcCcCcE
Confidence 8887655 356788999974
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=97.28 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p--~~D~v~~~~v 200 (228)
....+||||||+|.++..+++++|+..++++|+ +.+++.+.. .+++.++.+|+.. .+| .+|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 456999999999999999999999999999999 777665542 4689999999843 455 3899987654
Q ss_pred hcCCChhHH-----HHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDG-----LKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~-----~~il~~~~~aL~pgG~ 225 (228)
. .|+...- ..+|+.+++.|+|||.
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGT 230 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcE
Confidence 3 2543322 4789999999999974
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=96.02 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=68.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC---eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI---KCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~ 204 (228)
...+|||||||+|.++..+++..|.. +++++|+ +.+++.+++ .++++++.+|..+ |++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 888887765 5789999999887 665 3999987543
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ..+++++++|+|||.
T Consensus 161 ~-----~~~~e~~rvLkpgG~ 176 (272)
T PRK11088 161 P-----CKAEELARVVKPGGI 176 (272)
T ss_pred C-----CCHHHHHhhccCCCE
Confidence 1 235789999999974
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=94.47 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=73.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeeh------
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFK------ 198 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~------ 198 (228)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++++ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888877664 3469999999988765 49999885
Q ss_pred -------hhhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 199 -------LVFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 -------~vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
.++++-|. +...++++++.+.|+|||.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 22332221 2457899999999999974
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-10 Score=88.51 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p--~~D~v~~~ 198 (228)
+.+..+|||||||+|.++..++++. +..+++++|+.++. ...+++++.+|+.++ ++ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3566799999999999999999987 55799999995432 245699999999873 33 39999998
Q ss_pred hhhcCCChh---------HHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDE---------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~---------~~~~il~~~~~aL~pgG~ 225 (228)
...|...+. ....+|+.+++.|+|||.
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 777654322 125689999999999974
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-10 Score=83.34 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=72.3
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CC--CceEeeehhhh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F--VP--PADAFLFKLVF 201 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~--~p--~~D~v~~~~vl 201 (228)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+ .+|+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 887776653 4789999999977 2 33 49999998877
Q ss_pred cCCCh------hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
+.... +....+++++.+.|+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~ 110 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGV 110 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeE
Confidence 65421 2346889999999999975
|
... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=89.01 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=69.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
+.+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.+++ .++++++.+|..+..+ .||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 5667899999999999999999875 4579999999 888877764 4589999999977332 499999887
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+..+ +.+.+.|+|||.
T Consensus 154 ~~~~~~--------~~l~~~LkpgG~ 171 (212)
T PRK13942 154 AGPDIP--------KPLIEQLKDGGI 171 (212)
T ss_pred Ccccch--------HHHHHhhCCCcE
Confidence 665443 456678999974
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=95.61 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCCceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++|...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 578999999 888876653 13678899997543235999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+|+++++....+++.+.+ +.+||
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~ 244 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKR 244 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCE
Confidence 999998877788888875 45543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.8e-10 Score=87.83 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=70.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CceEeeehhhhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~~ 205 (228)
+...+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+ +++ .||+|++++++|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45679999999999999988876 4567899999 778877653 468899999865 243 399999999999997
Q ss_pred hhHHHHHHHHHHHHhccC
Q 038208 206 DEDGLKILKKRREAIASN 223 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pg 223 (228)
+. ..+|+++.+.++++
T Consensus 90 d~--~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NP--EEILDEMLRVGRHA 105 (194)
T ss_pred CH--HHHHHHHHHhCCeE
Confidence 75 56788888877654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=88.04 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=69.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..+ +.+++++|+ |++++.+++ .++++++.+|..+..+ .||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 56678999999999999999999864 578999998 888887764 3689999999977332 499999876
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..... .+.+.+.|+|||.
T Consensus 155 ~~~~~--------~~~~~~~L~~gG~ 172 (215)
T TIGR00080 155 AGPKI--------PEALIDQLKEGGI 172 (215)
T ss_pred Ccccc--------cHHHHHhcCcCcE
Confidence 55433 3557888999974
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-10 Score=87.62 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FV-PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~-p~~D~v~~~~ 199 (228)
.....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ .++++++.+|..+ .+ +.+|.+++.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 45668999999999999999999899999999999 888877653 3579999999865 22 235665442
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ......+++++.+.|+|||.
T Consensus 117 ----~-~~~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 117 ----G-GRPIKEILQAVWQYLKPGGR 137 (196)
T ss_pred ----C-CcCHHHHHHHHHHhcCCCeE
Confidence 1 23346889999999999974
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=90.20 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=73.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhh-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVF- 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vl- 201 (228)
.+..+|||+|||+|..+..+++..|+.+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 777776653 3689999999988654 49999875322
Q ss_pred -----cCCCh------------------hHHHHHHHHHHHHhccCCC
Q 038208 202 -----HGLGD------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 -----h~~~d------------------~~~~~il~~~~~aL~pgG~ 225 (228)
+...+ +....+++++.+.|+|||.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 11111 2236789999999999974
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-10 Score=88.58 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------- 174 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------------- 174 (228)
.+..++ .+...+-.+..+|||||.+|.++..|++.+-...++++|+ +..|..|++
T Consensus 45 ~D~rLk-~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLK-VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhh-hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 345566 6654466789999999999999999999998889999999 666665542
Q ss_pred ------------------CCCeEEEeC-------CCCC-CCCCceEeee----hhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 175 ------------------TDNLKYIAG-------DMFQ-FVPPADAFLF----KLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 ------------------~~rv~~~~g-------D~~~-~~p~~D~v~~----~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.+++.|+.+ ||.. ..|.||+|++ .||--+|.|+..+++|+++.+.|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 113333333 3443 3456999964 445457999999999999999999997
Q ss_pred C
Q 038208 225 E 225 (228)
Q Consensus 225 ~ 225 (228)
+
T Consensus 204 i 204 (288)
T KOG2899|consen 204 I 204 (288)
T ss_pred E
Confidence 5
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=75.66 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=73.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC----CCceEeeehhhhcCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------ETDNLKYIAGDMFQFV----PPADAFLFKLVFHGL 204 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------~~~rv~~~~gD~~~~~----p~~D~v~~~~vlh~~ 204 (228)
+++|+|||.|..+..+++ .+..+++++|+ +..+..++ ...+++++.+|+.+.. +.+|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67889999999 66655444 1578999999998732 249999999999875
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+....+++++.+.|+|||.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCE
Confidence 55668999999999999974
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=89.14 Aligned_cols=94 Identities=14% Similarity=0.303 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVP--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p--~~D~v~~ 197 (228)
.+...+|||+|||+|..+..+++++++.+++++|+ +.+.+.|++ .+||++++.|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34589999999999999999999999999999999 777777764 7899999999976 222 3899999
Q ss_pred hhhhcCCChh----------------HHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLGDE----------------DGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~----------------~~~~il~~~~~aL~pgG 224 (228)
+=..+.-++. .-..+++.+...|||||
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 8776654433 24578899999999996
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=87.99 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=79.1
Q ss_pred CeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----CC--CceEeeehh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF-----VP--PADAFLFKL 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~-----~p--~~D~v~~~~ 199 (228)
.++++||||.|...-.+++.+|+ +++..+|. |..++..++ ..|+.....|+..+ .+ ..|++++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 99999999 888887664 56777777787652 11 389999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.-.+++.....++++++.|||||.
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~ 178 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGS 178 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcE
Confidence 99999999999999999999999975
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=91.39 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=72.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFV---P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~---p-~~D~v 195 (228)
+++.+||+||||+|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+-+ + .||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 5678999999999999999998655568999999 888887763 468999999987622 2 49999
Q ss_pred eehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
++-..-+..+.. ....+++.+++.|+|||+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGv 186 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGI 186 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 985543332222 136789999999999975
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-09 Score=92.55 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC---CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF-VP---PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~-~p---~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|++++ .| .||+|+++-..
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 888887764 45899999999873 33 39999985432
Q ss_pred cCCCh-----------------------hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD-----------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d-----------------------~~~~~il~~~~~aL~pgG~ 225 (228)
..-.+ +--+++++.+.+.|+|||.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 11100 1234778888889999974
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-09 Score=81.13 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCCceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVPPADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p~~D~v~~~~v 200 (228)
..+..+++|||||+|..+.+++..+|..+++.+|. ++.++..+. .++++++.||.-+ ..|.+|.|++.-.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 56778999999999999999999999999999998 777766543 7899999999866 3446999999876
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
- ....+|+.+...|+|||
T Consensus 112 ~------~i~~ile~~~~~l~~gg 129 (187)
T COG2242 112 G------NIEEILEAAWERLKPGG 129 (187)
T ss_pred C------CHHHHHHHHHHHcCcCC
Confidence 2 22578999999999996
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=88.48 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=74.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC-C-CceEeeehhhhcCCChhHH
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFV-P-PADAFLFKLVFHGLGDEDG 209 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~-p-~~D~v~~~~vlh~~~d~~~ 209 (228)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+.+.. . .||+|+++-..+..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 56999999999999999999888889999999 888887765 468999999998733 3 4999999888876554322
Q ss_pred ------------------HHHHHHHHHHhccCCCC
Q 038208 210 ------------------LKILKKRREAIASNGER 226 (228)
Q Consensus 210 ------------------~~il~~~~~aL~pgG~~ 226 (228)
.++++.+...|+|+|+.
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~ 179 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA 179 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceE
Confidence 35667777888888753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=86.00 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCC-C--CC-CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----T-DNLKYIAGDMFQ-F--VP-PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~-~rv~~~~gD~~~-~--~p-~~D~v~~~~vl 201 (228)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++ . .++++...|+.+ + .+ .+|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 367999999999999999988654 5999999 777776653 2 268999998865 2 22 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+..+. ..+|+++.+.|+|||.
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGI 144 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcE
Confidence 998776 5799999999999974
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-09 Score=81.29 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=71.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDN-LKYIAGDMFQFVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~r-v~~~~gD~~~~~p--~~D~v~~~~v 200 (228)
.+..+|||+|||+|.++..++++ ..+++++|+ |.+++.+++ .++ +.++.+|+.++++ .+|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999998 678999999 788876643 222 8999999988655 4999998655
Q ss_pred hcCCC-------------------hhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLG-------------------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~-------------------d~~~~~il~~~~~aL~pgG~ 225 (228)
++... ......+++++.+.|+|||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 43211 12346689999999999974
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-09 Score=84.07 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-FV-- 189 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~~-- 189 (228)
.+..+||+.|||.|.-+..|++. +.+++++|+ +..++.+. ...+|+++++|+|+ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999997 667999999 77776631 14689999999998 32
Q ss_pred ---CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 ---PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 ---p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|+|+=+.+++.++++...+..+++.+.|+|||.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 249999999999999999999999999999999964
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-09 Score=83.67 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V-PPADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~-p~~D~v~~ 197 (228)
.....+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.+. . +.+|+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4567899999999999999998874 6789999999 888876653 36899999998652 2 35999988
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ..++...+++.+.+.|+|||.
T Consensus 118 ~~-----~~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCCCcE
Confidence 43 223346789999999999974
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=95.37 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhh---
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLV--- 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~v--- 200 (228)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .++++++.+|+++.++ .||+|+++-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887764 3589999999987554 4999998421
Q ss_pred -----------hcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 201 -----------FHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 -----------lh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
+.+.|. +.-.++++++.+.|+|||.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 111111 2235678889999999974
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=89.37 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=71.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC--CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP--PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D~ 194 (228)
.+++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35688999999999999999987533457999999 778876654 4699999999754 333 4999
Q ss_pred eeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
|++-..-+.-+.. -...+++.+++.|+|||+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGV 201 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 9874433222211 135789999999999985
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-09 Score=84.57 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-F--VP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~--~p-~~D~v~~~~vlh 202 (228)
+..+|||||||+|.++..+++. ..+++++|+ +..++.+++ ..+++++..|+.+ + .+ .||+|++.++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999886 467999999 677766553 3467888888755 2 22 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.++. ..+|+++.+.|+|||.
T Consensus 126 ~~~~~--~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 126 HVPDP--ASFVRACAKLVKPGGL 146 (233)
T ss_pred ccCCH--HHHHHHHHHHcCCCcE
Confidence 88765 5789999999999974
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-09 Score=84.19 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCcH--HHH--HHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 038208 133 GLGSLVDVGGGNGS--FSR--IISEA----FP-GIKCTVLDL-PHVVANLPE---------------------------- 174 (228)
Q Consensus 133 ~~~~vlDvGgG~G~--~~~--~l~~~----~p-~~~~~~~Dl-p~~i~~a~~---------------------------- 174 (228)
+.-+|.-.||++|. ++. .+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999997 333 33331 12 468999999 888887652
Q ss_pred ------CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 175 ------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 ------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..+|+|..+|..+ +.+ .+|+|++++||-+++++...+++++++++|+|||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence 3679999999998 322 4999999999999999999999999999999997
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.2e-09 Score=84.11 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+.++ .||+|+++-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 345679999999999999998886 3358999999 777875553 3468899999977544 499999874322
Q ss_pred CCCh-------------------hHHHHHHHHHHHHhccCCC
Q 038208 203 GLGD-------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d-------------------~~~~~il~~~~~aL~pgG~ 225 (228)
.-++ +....+++++.+.|+|||.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 1111 1235688999999999974
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-09 Score=85.85 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCC-----CceEeeehhhhc--
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQFVP-----PADAFLFKLVFH-- 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~~~p-----~~D~v~~~~vlh-- 202 (228)
..+|||+|||+|.++..+++..|..+++++|+ |.+++.+++ ..+++++.+|+++.++ .+|+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888887765 2346899999987432 499998764321
Q ss_pred ----CCChh------------------HHHHHHHHHHHHhccCCC
Q 038208 203 ----GLGDE------------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ----~~~d~------------------~~~~il~~~~~aL~pgG~ 225 (228)
..+++ ..+.+++.+.+.|+|||.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 11111 134788888899999974
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-09 Score=87.51 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=66.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
....+|||||||+|.++..+++. +..+++++|+ |.+++.+++ ..++.+...|.....+ .||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35689999999999999888865 4458999999 788877664 3567777776433223 59999986543
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++++++.|+|||.
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcE
Confidence 2346789999999999974
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-09 Score=82.11 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCC--ceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVPP--ADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p~--~D~v~~~~vlh~~ 204 (228)
.++..+|||+|||.|.++..+.+. .++++.++|+ ++-+..+. ...++++.+|+.+ .+|+ ||.|+++++|...
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 356799999999999999888885 5899999999 55444333 3568899999976 3663 9999999999988
Q ss_pred ChhHHHHHHHHHHHH
Q 038208 205 GDEDGLKILKKRREA 219 (228)
Q Consensus 205 ~d~~~~~il~~~~~a 219 (228)
..+ ..+|+++.+.
T Consensus 89 ~~P--~~vL~EmlRV 101 (193)
T PF07021_consen 89 RRP--DEVLEEMLRV 101 (193)
T ss_pred hHH--HHHHHHHHHh
Confidence 766 4567777655
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.7e-09 Score=81.42 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p--~~D~v~~~ 198 (228)
..+..+|||||||+|.++..+++++ +..+++++|+.+.. ..++++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4567899999999999999999987 66789999994332 246789999998652 23 39999985
Q ss_pred hhhc---CCCh------hHHHHHHHHHHHHhccCCC
Q 038208 199 LVFH---GLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh---~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
...| .|.. +....+|+++++.|+|||.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 4322 1221 2246789999999999974
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-09 Score=89.82 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=72.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CC-Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQF---VP-PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~---~p-~~ 192 (228)
..++.+||+||||+|..++++++..+..+++++|+ |.+++.|++ .+|++++.+|..+- .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998656678999999 888887662 57999999999762 22 49
Q ss_pred eEeeehhhhc---CCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFH---GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh---~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++-..-. ....-....+++.+++.|+|||+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGA 263 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence 9999863210 01112236789999999999985
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=84.15 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=70.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PH----VVANLPETDNLKYIAGDMFQFV------PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~----~i~~a~~~~rv~~~~gD~~~~~------p~~D~v~~~ 198 (228)
+.+..+|||+|||+|.++..+++.. |.-+++++|+ +. +++.++...+|.++.+|+..+. +.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 4566899999999999999999986 4568999998 53 5566555688999999986532 248999776
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. .+++...++.++++.|||||.
T Consensus 210 va----~pdq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 210 VA----QPDQARIVALNAQYFLKNGGH 232 (293)
T ss_pred CC----CcchHHHHHHHHHHhccCCCE
Confidence 63 233456677899999999974
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=79.80 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred hhhhhccCCCe-EEEecCCCcHHHHHHHHHCCCCeEEEeech-HHHhcCC------CCCCe-EEEeCCCCCC---CC---
Q 038208 126 ECKQIFEGLGS-LVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVVANLP------ETDNL-KYIAGDMFQF---VP--- 190 (228)
Q Consensus 126 ~~~~~~~~~~~-vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~------~~~rv-~~~~gD~~~~---~p--- 190 (228)
.+...++...+ ||+||+|||.++..+++++|+++..--|.+ .....++ ..+++ .-+.-|+.++ .+
T Consensus 17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc
Confidence 44333555554 999999999999999999999998877873 3222211 11221 1123344432 11
Q ss_pred -----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|.|++.+++|..+-+.+..+++.+.+.|+|||.
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCE
Confidence 48999999999999999999999999999999974
|
The function of this family is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=81.41 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ..+++++.+|..+.++ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7999998 788776653 3469999999877433 4999999876
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++ .+.+.+.|+|||.
T Consensus 154 ~~~~--------~~~l~~~L~~gG~ 170 (212)
T PRK00312 154 APEI--------PRALLEQLKEGGI 170 (212)
T ss_pred chhh--------hHHHHHhcCCCcE
Confidence 6544 3557789999974
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=83.13 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=61.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
.....+|||||||+|.++..+++..+. +++++|+ |.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~-- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL-- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence 346789999999999999887776443 6999999 888887764 13344433332 5899987532
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+....+++++.+.|+|||.
T Consensus 189 ---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 189 ---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred ---HHHHHHHHHHHHHhcCCCcE
Confidence 23346789999999999974
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=85.52 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|.++- .+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999999 788776653 36899999998652 23 499999
Q ss_pred ehhhhcCCChhH--HHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
+...-+.-+... ...+++++++.|+|||+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence 866533222222 46789999999999975
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=83.96 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc------CC-CCCCeEEEeCCCCCCCC---CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN------LP-ETDNLKYIAGDMFQFVP---PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~------a~-~~~rv~~~~gD~~~~~p---~~D~v~~~~vl 201 (228)
..++|||||||+|.++..++++.|. .++++|- +....+ .- ...++.++..-+ +.+| .||+|++--||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccccCCcCEEEEeeeh
Confidence 5789999999999999999999654 5899995 322222 11 123344443222 2333 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|..++ ...|+++++.|+|||.
T Consensus 193 YHrr~P--l~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLRPGGE 214 (315)
T ss_pred hccCCH--HHHHHHHHHhhCCCCE
Confidence 999888 7899999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-08 Score=79.26 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=95.5
Q ss_pred ChhhhcccCccHHHHHHHHHHhccchh----------HHHHHHHhhhhhc-cCCCeEEEecCCCcH----HHHHHHHHCC
Q 038208 92 KFWEFLNQNPGINQRFNEAMASDSEIM----------TSFVVKAECKQIF-EGLGSLVDVGGGNGS----FSRIISEAFP 156 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~f~~~m~~~~~~~----------~~~~~~~~~~~~~-~~~~~vlDvGgG~G~----~~~~l~~~~p 156 (228)
.++..+..+++..+.|-.+|..-...+ ...+++ .+-..- .+.-+|.-.||++|. .++.+.+..|
T Consensus 45 ~y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p-~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~ 123 (268)
T COG1352 45 EYLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLP-ELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALG 123 (268)
T ss_pred HHHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHH-HHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhc
Confidence 345566666666667777766433211 112222 111001 136789999999996 5566667776
Q ss_pred -----CCeEEEeec-hHHHhcCCC-----------------------------------CCCeEEEeCCCCCC--CC-Cc
Q 038208 157 -----GIKCTVLDL-PHVVANLPE-----------------------------------TDNLKYIAGDMFQF--VP-PA 192 (228)
Q Consensus 157 -----~~~~~~~Dl-p~~i~~a~~-----------------------------------~~rv~~~~gD~~~~--~p-~~ 192 (228)
..++++.|+ ..+++.|+. ...|.|..+|..++ .+ .+
T Consensus 124 ~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~f 203 (268)
T COG1352 124 KLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKF 203 (268)
T ss_pred cccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCC
Confidence 478999999 788877652 24599999999884 44 49
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+|++||-+++.+...+|+++.+..|+|||.
T Consensus 204 D~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 204 DLIFCRNVLIYFDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred CEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCE
Confidence 999999999999999999999999999999974
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=91.63 Aligned_cols=93 Identities=17% Similarity=0.304 Sum_probs=71.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CC-Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQF---VP-PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~---~p-~~ 192 (228)
+++++|||||||+|..+.++++ +|. .+++++|+ |++++.+++ .+|++++.+|..+. .+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 5678999999999999999997 565 79999999 889987764 26899999998762 23 59
Q ss_pred eEeeehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
|+|++...-...+.. -...+++++++.|+|||+
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence 999887433221211 124689999999999975
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=81.59 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=77.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CCC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~~p- 190 (228)
....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+. ...+|++.++|+|+ +..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 45679999999999999999997 678999999 77776541 04579999999998 322
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+=+..|+-++++.+.+-.+++.+.|+|||.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 49999999999999999999999999999999974
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=82.17 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCeEEEecCCCcH--HHH--HHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 038208 134 LGSLVDVGGGNGS--FSR--IISEAFP----GIKCTVLDL-PHVVANLPE------------------------------ 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~--~~~--~l~~~~p----~~~~~~~Dl-p~~i~~a~~------------------------------ 174 (228)
.-+|...||++|. |++ .+.+..+ +.++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 333 3444332 468999999 788876652
Q ss_pred -------CCCeEEEeCCCCC-CCC---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 -------TDNLKYIAGDMFQ-FVP---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 -------~~rv~~~~gD~~~-~~p---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|+|..+|..+ ++| .+|+|+++++|.+++++...+++++++++|+|||.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 2558999999988 444 49999999999999999999999999999999973
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=83.54 Aligned_cols=87 Identities=14% Similarity=0.273 Sum_probs=67.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..+. .+++++|+ +++++.+++ .++++++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 456689999999999999999998864 57999999 888776653 467999999987632 2499999876
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++..+ ..+.+.|+|||.
T Consensus 158 g~~~ip--------~~~~~~LkpgG~ 175 (322)
T PRK13943 158 GVDEVP--------ETWFTQLKEGGR 175 (322)
T ss_pred chHHhH--------HHHHHhcCCCCE
Confidence 554432 345678999974
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=76.50 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..++++|||||||+|.-+..+++..| +.+++.+|+ |+.++.+++ .++|+++.+|..+. + +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45788999999999999999999865 689999999 777777664 57899999999762 1 249
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++- -..+.-...+..+.+.|+|||+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeE
Confidence 999873 3334456789999999999975
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=83.65 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhh--cC--
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVF--HG-- 203 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vl--h~-- 203 (228)
+|||||||||..+..+++++|+.++++.|+ |..++.|++ ..++.++.+|++++++ .||+|+++=-. ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888887764 2667778889999776 59999765321 10
Q ss_pred -C----------------C--hhHHHHHHHHHHHHhccCCC
Q 038208 204 -L----------------G--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 -~----------------~--d~~~~~il~~~~~aL~pgG~ 225 (228)
. . -+...+++..+.+.|+|||.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~ 233 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGV 233 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcE
Confidence 0 0 13456788888889999864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-08 Score=77.76 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~ 205 (228)
...+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-.+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 35799999999999999999875 4678999999 888888876 4679999999976 444 499999887766432
Q ss_pred h----------hHHHHHHHHHHHHhccCC
Q 038208 206 D----------EDGLKILKKRREAIASNG 224 (228)
Q Consensus 206 d----------~~~~~il~~~~~aL~pgG 224 (228)
. .-...+++++.+.++||+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 1 224568888888666663
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=81.04 Aligned_cols=93 Identities=18% Similarity=0.092 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
+.+..+|||+|||+|.++.+.+.. ..+++++|+ +.++..++. .+.+.++.+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456679999999999999887654 678999999 788876553 2448899999987 554 4999998533
Q ss_pred hcC-------CChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHG-------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~-------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... ...+...++|+++++.|+|||.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 211 1223357899999999999974
|
This family is found exclusively in the Archaea. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=83.16 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF---VP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~---~p--~~D~v~~~~ 199 (228)
..+..+|||+|||+|..+..+++..++.+++++|+ +.+++.+++ .-+++++.+|..+. .+ .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 34568999999999999999999998889999999 888877654 23578999999762 22 399998422
Q ss_pred ------hhc-------CCChhH-------HHHHHHHHHHHhccCCC
Q 038208 200 ------VFH-------GLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 ------vlh-------~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
++. .+..++ ..++|+++.+.|+|||.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 111 122222 35799999999999974
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=83.56 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+|+++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 3456799999999999999999986 6789999999 777776653 24699999999762 34 49999864
Q ss_pred hh------hc-------CCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 LV------FH-------GLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~v------lh-------~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
-. +. .++.++ ...+|+++.+.|+|||.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 21 11 122222 25689999999999974
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-08 Score=78.47 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDN-LKYIAGDMFQ--FVP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~r-v~~~~gD~~~--~~p-~~D~v~~~~vlh 202 (228)
+..+.||.|+|.|..+..++-.+ --++-++|. +..++.|++ ..+ .++.+..+.+ |.+ .||+|++-|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999877543 124777776 788887763 223 5566665544 433 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|++...+|+++.++|+|||.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~ 156 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGV 156 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcE
Confidence 99999999999999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=73.09 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=59.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--ceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. +|.++.+-..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py- 87 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY- 87 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-
Confidence 456679999999999999999998 568999999 777776653 4689999999988 5553 7888765444
Q ss_pred CCChhHHHHHH
Q 038208 203 GLGDEDGLKIL 213 (228)
Q Consensus 203 ~~~d~~~~~il 213 (228)
+...+...+++
T Consensus 88 ~~~~~~i~~~l 98 (169)
T smart00650 88 NISTPILFKLL 98 (169)
T ss_pred ccHHHHHHHHH
Confidence 34444333333
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-08 Score=75.22 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=67.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC-C-CC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLK-YIAGDMFQ-F-VP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~-~~~gD~~~-~-~p--~~D~v~~~~ 199 (228)
+....||+||||+|..-... .--|..++|.+|- |.+.+.+.+ ...+. |+.++..+ + ++ .+|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 34567899999999865431 1124678999997 666554432 56677 88888866 3 44 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+...|. .+.|+++.+.|+|||.
T Consensus 154 vLCSve~~--~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRPGGR 177 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCCCcE
Confidence 99877655 8999999999999974
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-08 Score=75.24 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-CceEeeehhhhc
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF--VP-PADAFLFKLVFH 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~--~p-~~D~v~~~~vlh 202 (228)
..+|||+|||+|+++..|++.--.-+.+++|. +..++.|+. .+.|+|+..|+++| .+ .||+|+=+-++-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999865666899998 777766542 45599999999985 33 499997666553
Q ss_pred C------CChhHHHHHHHHHHHHhccCCC
Q 038208 203 G------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
- -++.....-+..+.+.|+|||+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcE
Confidence 2 2222223447788888999974
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=75.49 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=65.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC--CCC----C-C--C-CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGD--MFQ----F-V--P-PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD--~~~----~-~--p-~~D~v~~~~v 200 (228)
...+.++|||||+|..++.++..+. ++++.|. +.+++.+++..+++...-- |.+ + . + ..|+|++.++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445999999999977777777654 4899999 8999999885555544332 221 1 1 2 3899999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+|.+.-+ ++++.+++.|++.|
T Consensus 110 ~HWFdle---~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRKDG 130 (261)
T ss_pred HHhhchH---HHHHHHHHHcCCCC
Confidence 9977654 78999999998876
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=82.58 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeeh---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFK--- 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~--- 198 (228)
....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 3567999999999999999888764 468999999 888877654 3579999999977323 49999851
Q ss_pred ---hhh-------cCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 ---LVF-------HGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ---~vl-------h~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.++ +.+++++ -.++|+++.+.|+|||.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 111 2233332 24699999999999974
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=82.52 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FV--P--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~--p--~~D~v~~ 197 (228)
..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++ ..+++++.+|... +. + .||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 44568999999999999999999988889999999 777776653 2234557788765 22 2 4999985
Q ss_pred h------hhhcCCCh-------h-------HHHHHHHHHHHHhccCCC
Q 038208 198 K------LVFHGLGD-------E-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~------~vlh~~~d-------~-------~~~~il~~~~~aL~pgG~ 225 (228)
- .+++..|+ + ...++|+++.+.|||||.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2 34554443 1 136899999999999974
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=90.47 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=54.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------TDNLKYIAGDMFQFVP 190 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------------~~rv~~~~gD~~~~~p 190 (228)
..+|||||||+|..+..+++++|+.+++++|+ |.+++.+++ .+||+++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 888876632 1489999999988543
Q ss_pred ----CceEeeeh
Q 038208 191 ----PADAFLFK 198 (228)
Q Consensus 191 ----~~D~v~~~ 198 (228)
.+|+|+.+
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 38998765
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-07 Score=76.03 Aligned_cols=74 Identities=18% Similarity=0.378 Sum_probs=58.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPPADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~ 204 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.|+.+-.. ++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy-~i 103 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY-QI 103 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc-cc
Confidence 4567899999999999999999984 57999999 777776653 4689999999988 67778988775554 44
Q ss_pred Chh
Q 038208 205 GDE 207 (228)
Q Consensus 205 ~d~ 207 (228)
+.+
T Consensus 104 ~s~ 106 (258)
T PRK14896 104 SSP 106 (258)
T ss_pred CcH
Confidence 433
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=75.80 Aligned_cols=93 Identities=15% Similarity=0.299 Sum_probs=67.5
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-- 190 (228)
.+++ .++ +.+..+|||||||+|.++..+++.. +..+++.+|. |..++.|++ ..+|+++.+|....++
T Consensus 63 ~~l~-~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 63 RMLE-ALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHH-HTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHH-HHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 3445 454 6778899999999999999999875 5567999998 888887764 5689999999877444
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.||.|++.......|. ...+.|++||
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gG 166 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGG 166 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCc
Confidence 4999999887755443 3556688886
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-07 Score=75.14 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CCCceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF------VPPADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~------~p~~D~v 195 (228)
..+.+||||.||+|.+...+++.+|. .++.+.|. |.-++..++ .+-++|..+|.|.. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35789999999999999999999998 78999999 766665443 44559999999882 2458999
Q ss_pred eehhhhcCCChhH-HHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDED-GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~-~~~il~~~~~aL~pgG~ 225 (228)
+.+-+.-.++|.+ ....|+.+++++.|||.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence 9999999999966 55579999999999974
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=73.43 Aligned_cols=91 Identities=18% Similarity=0.319 Sum_probs=64.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCC----CC--CceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------ETDNLKYIAGDMFQF----VP--PADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------~~~rv~~~~gD~~~~----~p--~~D~v~~~~v 200 (228)
...+||||||.|.++..+++++|+..++++|+ ...+..+. ...++.++++|...- ++ ..|-|++.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34999999999999999999999999999999 55554443 278999999998761 33 3566655433
Q ss_pred hcCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
== |+.. -...+|+.+++.|+|||.
T Consensus 98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 98 DP-WPKKRHHKRRLVNPEFLELLARVLKPGGE 128 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred CC-CcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence 21 3321 125689999999999974
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=76.51 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.3
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CC-CCceEe
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLK----YIAGDMFQ-FV-PPADAF 195 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~----~~~gD~~~-~~-p~~D~v 195 (228)
.+.....+..+|+|||||||.++++.++.. ..+++++|+ |..++.+++ ...|. ....+..+ +. ..||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 333334588999999999999999999874 346999999 888877765 23333 22223322 22 249999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+= | . +-...+...+++.++|||.
T Consensus 234 VANI-L---A-~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 234 VANI-L---A-EVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred Eehh-h---H-HHHHHHHHHHHHHcCCCce
Confidence 8754 3 2 2346889999999999974
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=76.93 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=55.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCCc--eEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVPPA--DAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p~~--D~v~~~~vlh~ 203 (228)
.....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++.+|+.+ +++.. |.++. +.-++
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~-NlPY~ 116 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVA-NLPYN 116 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEE-eCCcc
Confidence 45667999999999999999999976 7999999 888887654 3689999999987 44443 44443 34444
Q ss_pred CC
Q 038208 204 LG 205 (228)
Q Consensus 204 ~~ 205 (228)
.+
T Consensus 117 is 118 (272)
T PRK00274 117 IT 118 (272)
T ss_pred ch
Confidence 44
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=77.70 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC--CCceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV--PPADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~--p~~D~v~~~~vl 201 (228)
.+..+|||||||||.+++..++... .+++++|+ |..++.+++ .+++.+. . ..+. ..||+|+.+-.-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4568999999999999999998743 47999999 887877664 4566553 1 1222 359999865433
Q ss_pred cCCChhHHHHHHHHHHHHhccCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG 224 (228)
+....++..+.+.|+|||
T Consensus 236 -----~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGG 253 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCC
Confidence 334678888999999996
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-07 Score=75.91 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=62.1
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCce
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPPAD 193 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~~D 193 (228)
..+++ .++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.++. .++++++.+|+.+ +++.+|
T Consensus 19 ~~i~~-~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIVE-AAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHH-hcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 33444 443 456789999999999999999999864 888998 777766653 4789999999988 555555
Q ss_pred --EeeehhhhcCCChhHHHHHH
Q 038208 194 --AFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 194 --~v~~~~vlh~~~d~~~~~il 213 (228)
.+++.+.-++++.+-..+++
T Consensus 94 ~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 94 KQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred CcceEEEcCChhhHHHHHHHHh
Confidence 34444444445544333333
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-07 Score=74.65 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p~~D~v~~~~ 199 (228)
..+..+|||+|||+|..+..+++... ..+++++|+ +..++.+++ ..+|+++..|... + .+.||.|++--
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34567999999999999999999875 468999999 777776653 3578999999754 2 23599998621
Q ss_pred ------hh-------cCCChhHH-------HHHHHHHHHHhccCCC
Q 038208 200 ------VF-------HGLGDEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 200 ------vl-------h~~~d~~~-------~~il~~~~~aL~pgG~ 225 (228)
++ ..|.+++. .++|+++.+.|||||.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 11 12343322 5699999999999974
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-07 Score=79.66 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~ 198 (228)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|..+ + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4556799999999999999999986 5679999999 888877654 3468999999865 2 22 49999862
Q ss_pred ------hhhc-------CCChh-------HHHHHHHHHHHHhccCCC
Q 038208 199 ------LVFH-------GLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ------~vlh-------~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
.++. .++.+ .-.++|.++.+.|+|||.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 1122 22221 236789999999999975
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=78.04 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCCC-----CC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------TDNLKYIAGDMFQF-----VP 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------~~rv~~~~gD~~~~-----~p 190 (228)
+..+|||+|||-|.-+.-..+.. -..++++|+ +..|++|++ .-...|+.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999888777666652 346899999 677776653 12467788888752 22
Q ss_pred ----CceEeeehhhhcCC--ChhHHHHHHHHHHHHhccCCC
Q 038208 191 ----PADAFLFKLVFHGL--GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ----~~D~v~~~~vlh~~--~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|-+-..||+. +.+.++.+|+++.+.|+|||.
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 49999999999983 577888899999999999974
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-07 Score=79.72 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C-C-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F----V-P-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~----~-p-~~D~v 195 (228)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++++|..+ + . + .||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 3456899999999999999999986 4568999999 778876653 3579999999876 2 1 1 49999
Q ss_pred eeh------hhhcCCCh-------hH-------HHHHHHHHHHHhccCCC
Q 038208 196 LFK------LVFHGLGD-------ED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~------~vlh~~~d-------~~-------~~~il~~~~~aL~pgG~ 225 (228)
++- .+++..++ ++ ..++|+++.+.|||||.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 862 24443333 22 36899999999999974
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-07 Score=76.24 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p-~~D~v~ 196 (228)
+++++||-||+|.|..++++++..+.-+++.+|+ |.+++.+++ .+|++++.+|-.+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4567999999999999999999988889999999 899988774 4899999999876 344 499998
Q ss_pred ehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
+-..=.. .+. -...+++.++++|+|+|+
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGI 185 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcE
Confidence 7553321 110 125789999999999986
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=69.56 Aligned_cols=85 Identities=12% Similarity=0.237 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
+....+||+||||+|..+.-+++.-- +++.+|+ +...+.|++ ..+|.+.++|-..-+| .||.|+..-.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec
Confidence 67889999999999999999998754 7888998 788877764 4579999999988544 4999998887
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.-..|+ .+.+.|+|||.
T Consensus 148 a~~vP~--------~Ll~QL~~gGr 164 (209)
T COG2518 148 APEVPE--------ALLDQLKPGGR 164 (209)
T ss_pred cCCCCH--------HHHHhcccCCE
Confidence 766664 35677899964
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=73.18 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--CC-C-ceEeeehhhhcC---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQF--VP-P-ADAFLFKLVFHG--- 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~--~p-~-~D~v~~~~vlh~--- 203 (228)
....|||||||+|..+..+... ....+++|+ |+|++.+.+ .-.-.++-+|+-+. ++ + ||-+++...+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 3789999999999988887764 578999999 999998875 11145778888874 33 3 998876655532
Q ss_pred ------CChhHHHHHHHHHHHHhccCC
Q 038208 204 ------LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ------~~d~~~~~il~~~~~aL~pgG 224 (228)
.|......++..++.+|++|+
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCc
Confidence 122344566788999999984
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=71.11 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=83.9
Q ss_pred HHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------
Q 038208 108 NEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISE-AFPGIKCTVLDL-PHVVANLPE------- 174 (228)
Q Consensus 108 ~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-p~~i~~a~~------- 174 (228)
...|...++.. +..++. ... .+...+|+|.|-|+|.++..|++ -.|..+++.+|+ ++..+.|++
T Consensus 68 ~~~~~R~tQiIyPKD~~~I~~-~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 68 LLSMKRRTQIIYPKDAGYIVA-RLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHhCcCCCceecCCCHHHHHH-HcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence 33355544432 334444 444 77899999999999999999997 568899999998 777777764
Q ss_pred CCCeEEEeCCCCCC-CC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQF-VP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~~-~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|++..+|+.+. .+ .+|++++ |.|++ -..+.++.++|+|||.
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~ 190 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGV 190 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcE
Confidence 57799999999883 33 5898876 78877 6789999999999975
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=77.84 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
+++++||.||||.|..++++++..+..+++++|+ |.+++.+++ .+|++++.+|.++- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999998766778999999 888887763 47999999998762 22 499998
Q ss_pred ehhhhcCCC--hh---HHHHHHH-HHHHHhccCCC
Q 038208 197 FKLVFHGLG--DE---DGLKILK-KRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~--d~---~~~~il~-~~~~aL~pgG~ 225 (228)
+--. ..+. .. -...+++ .+++.|+|||+
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 7521 1110 00 1245777 89999999985
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.5e-07 Score=73.37 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=66.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCC-CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQFV-PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~~-p~~D~v~~~ 198 (228)
.+++++||=||||.|..++++++. |. +++.+|+ +.|++.+++ .+|++++.. +.+.. ..||+|++=
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 467899999999999999999996 55 9999999 788877664 689999862 32222 359999865
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. .+ ....+.++++|+|||+
T Consensus 147 s~----~~---~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKEDGV 166 (262)
T ss_pred CC----CC---hHHHHHHHHhcCCCcE
Confidence 42 22 4678999999999985
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.2e-07 Score=79.39 Aligned_cols=125 Identities=21% Similarity=0.297 Sum_probs=79.3
Q ss_pred hhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhh--ccCCCeEEEecCCCcHHHHHHHHHC----CCCeEEEeec-
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQI--FEGLGSLVDVGGGNGSFSRIISEAF----PGIKCTVLDL- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~Dl- 165 (228)
-|+-+++|+...+.|.+++.. .+.+..... -.+...|+|||||+|-++...+++. -..++.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~--------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE--------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH--------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH--------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 467777888877778777522 122011100 0135789999999999987766653 4578999997
Q ss_pred hHHHhcC----C--C-CCCeEEEeCCCCC-CCCC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 166 PHVVANL----P--E-TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 166 p~~i~~a----~--~-~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|..+... + . .++|+++.+|+.+ ..|. +|+++.-..=.....|-....|....+-|||||+
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence 5433221 1 1 6899999999988 6774 9999876665434445556678888889999964
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-07 Score=70.55 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=63.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------C-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQFV------P-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~~~------p-~~D~ 194 (228)
.....+||++|||+|..++.+++..+..++++-|.+++++..+. ..++++...|+.++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999999877888999999767664432 467899998886632 2 4999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+.+.++|+ ++....+++-+.+.|+|+|.
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCE
Confidence 999999975 57778999999999999864
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-07 Score=70.67 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=52.3
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 161 TVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 161 ~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|. +++++.+++ ..+|+++.+|+.+ ++++ ||+|++..++|+++|. .+.|++++++|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeE
Confidence 46888 888887642 2479999999977 6653 9999999999999765 6899999999999974
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=65.45 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=79.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----CC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-F-----VP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~-----~p--~~D~v~~~~ 199 (228)
+....-|+++|.|+|.++.+|+++. ++-..+.++. ++......+ -+.++++.||.+. . .+ .+|.|++.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 5566789999999999999999975 6667888887 777766654 6778899999876 2 33 399999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-+-.+|.....+||.++..-|++||.
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~ 151 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGP 151 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999964
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=73.80 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=61.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|+++. +.-
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~Vva-NlP 110 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVA-NVP 110 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEe-cCC
Confidence 4566899999999999999999974 46899999 777776653 4689999999987 6667887765 455
Q ss_pred cCCChhHHHHHH
Q 038208 202 HGLGDEDGLKIL 213 (228)
Q Consensus 202 h~~~d~~~~~il 213 (228)
++++.+...++|
T Consensus 111 Y~Istpil~~ll 122 (294)
T PTZ00338 111 YQISSPLVFKLL 122 (294)
T ss_pred cccCcHHHHHHH
Confidence 556665555555
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=70.54 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=60.2
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCCC
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------TDNLKYIAGDM 185 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------~~rv~~~~gD~ 185 (228)
+++ .+. +.+...++|||||.|......+-.++--+++++++ |...+.+.. ..++++..+||
T Consensus 34 il~-~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILD-ELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHH-HTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHH-HhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 344 444 56678999999999999998887776556999998 655543321 56799999999
Q ss_pred CC-C-----CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 186 FQ-F-----VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 186 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.+ + +.++|+|++++.+ |+++...++ ++....||||
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G 151 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPG 151 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCC
Confidence 87 3 2469999999986 676655555 6777788887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.4e-07 Score=74.22 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---F-VP-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~-~p-~~D~ 194 (228)
.+++++||=||+|.|..+.++++..+..+++++|+ |.+++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 35789999999999999999998766778999999 888887764 4799999999865 2 23 5999
Q ss_pred eeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
|++-..=-..+.. -...+++.+++.|+|||+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcE
Confidence 9863332111211 136789999999999985
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=73.33 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCC-----C----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TD----NLKYIAGDMFQF-----V---- 189 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~----rv~~~~gD~~~~-----~---- 189 (228)
+....++|+|||-|.-++..-++. =-.+++.|+ .-.|.++++ .. .+.|+++|-+.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 567889999999999888776652 125899999 556777664 12 378999998751 2
Q ss_pred CCceEeeehhhhcC-C-ChhHHHHHHHHHHHHhccCCC
Q 038208 190 PPADAFLFKLVFHG-L-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p~~D~v~~~~vlh~-~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
|.||+|-+-+++|+ | +.+.++.+|+++.+.|+|||+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 24999999999997 4 567888899999999999985
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-06 Score=61.99 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCeEEEecCCCcH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CceEeeehhhhcCCCh
Q 038208 133 GLGSLVDVGGGNGS-FSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP----PADAFLFKLVFHGLGD 206 (228)
Q Consensus 133 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p----~~D~v~~~~vlh~~~d 206 (228)
+..+++|||||+|. .+..+.+. +.+++++|+ |..++.+++ ..++++.+|+|++-+ ++|+|+..+ |+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 45789999999996 77777765 678999999 888877764 468999999999533 599998865 33
Q ss_pred hHHHHHHHHHHHHh
Q 038208 207 EDGLKILKKRREAI 220 (228)
Q Consensus 207 ~~~~~il~~~~~aL 220 (228)
.+...-+.++++..
T Consensus 88 ~el~~~~~~la~~~ 101 (134)
T PRK04148 88 RDLQPFILELAKKI 101 (134)
T ss_pred HHHHHHHHHHHHHc
Confidence 44445555555443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-07 Score=73.70 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccchhHHHHHHHhhhhh-ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC-eE
Q 038208 103 INQRFNEAMASDSEIMTSFVVKAECKQI-FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDN-LK 179 (228)
Q Consensus 103 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~r-v~ 179 (228)
..++|....-..-....+..+...+... .....++||+|||||..+..|...- -+.+++|+ ..|++.+.+..- =+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~ 171 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDT 171 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHH
Confidence 3456665554333333344443122211 2337899999999999999888763 35789999 788888875111 11
Q ss_pred EEeC---CCCC--CCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 180 YIAG---DMFQ--FVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 180 ~~~g---D~~~--~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+... +|.. ....+|+|....||-++.+- ..++--+...|+|||-
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGl 220 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGL 220 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCCCce
Confidence 1112 2433 22349999999999988765 5789999999999974
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.3e-07 Score=72.17 Aligned_cols=90 Identities=19% Similarity=0.303 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV---------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~---------p~~ 192 (228)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .++|+++.+|..+.+ ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45789999999999999999999987 589999999 777776654 579999999986521 249
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++-. ...+-...+..+.+.|+|||+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEE
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeE
Confidence 9998754 445557888999999999975
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=70.40 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=73.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..++++|||||+++|..+..+++..| +.+++.+|. |+..+.|++ .++|+++.||..+. + ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45789999999999999999999875 668999999 777776654 57999999998662 2 248
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++- -+..+-...+..+.+.|+|||+
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcE
Confidence 988874 3455668889999999999985
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=71.15 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEeeehhhhcCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHGL 204 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~~ 204 (228)
.+.|||||||+|.++.-.+++. ..++..++-.+|.+-|++ .+||+++.|-+.+ ++|+ +|+++.--.-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 5789999999999998888774 346888888777776654 7899999999988 8896 9999876555555
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
-.|....-.-.+++.|+|+|.
T Consensus 257 ~NERMLEsYl~Ark~l~P~Gk 277 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGK 277 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCc
Confidence 555555555667799999974
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=70.85 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=74.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG- 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~- 205 (228)
.+....++|+|||.|.++.- +|.+-.+++|+ -..+..++..+.......|+.+ |.+ .+|..+...++|+|+
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 34578999999999998754 58889999999 6677777654444677789887 655 499999999999997
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
.+...+++++..+.++|||-
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~ 138 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGN 138 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 45667899999999999974
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-06 Score=68.16 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=52.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C-CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---P-PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p-~~D~v~~~~vl 201 (228)
...+|||+|||+|.++.+++.+.. .+++.+|. +..++.+++ .++++++.+|+++.+ . .||+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999998766653 68999999 777776653 357999999997632 2 39999876654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-06 Score=68.96 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC-CC----C-CCeEEEeCCCCC---CC-C--CceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL-PE----T-DNLKYIAGDMFQ---FV-P--PADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-~~----~-~rv~~~~gD~~~---~~-p--~~D~v~~~~v 200 (228)
...+||||||.|.++..+++++|+.-++++++ ..++..+ ++ . .++.++++|..+ .+ + +.|-|++.+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999998 4444333 21 3 399999999866 22 3 2555554432
Q ss_pred hcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
= -|+... ...+|+.+.+.|+|||.
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~ 159 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGV 159 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCE
Confidence 1 133221 24679999999999975
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-06 Score=77.21 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=60.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----CC--CceEeee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF-----VP--PADAFLF 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~-----~p--~~D~v~~ 197 (228)
.+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+. ++ .||+|++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 456799999999999999999885 58999999 888887764 35799999998652 22 3899876
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
. -|-.....+++.+.+ ++|++
T Consensus 374 d-----PPr~g~~~~~~~l~~-~~~~~ 394 (443)
T PRK13168 374 D-----PPRAGAAEVMQALAK-LGPKR 394 (443)
T ss_pred C-----cCCcChHHHHHHHHh-cCCCe
Confidence 3 222222334444443 56654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-06 Score=66.19 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C---CCCceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIA-GDMFQ--F---VPPADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~-gD~~~--~---~p~~D~v 195 (228)
.++++++|+||.+.|.-+..++...| +.+++.+|+ |+.++.|++ .++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888774 67788888 58765 2 2359999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ |-...+-...|..+.+.|+|||+
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRPGGL 161 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCCCcE
Confidence 87 34444557889999999999986
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=64.44 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
..++|+|+|||+|.++...+-..| .+++++|+ |+.++.++. ..+|.|++.|....-..+|.++++=.+--|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 567899999999999998877654 47999999 888887765 568999999997644457777776655444
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=66.26 Aligned_cols=92 Identities=24% Similarity=0.399 Sum_probs=59.9
Q ss_pred CCCeEEEecCCCcH--HHHHHHHH-CCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC---C--C-------
Q 038208 133 GLGSLVDVGGGNGS--FSRIISEA-FPGIKCTVLDL-PHVVANLPE----TDN--LKYIAGDMFQF---V--P------- 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~--~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----~~r--v~~~~gD~~~~---~--p------- 190 (228)
+...+||||||-=. ...+++++ .|+.+++-+|. |-++..++. .++ ..++.+|+.++ + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999543 56667664 69999999999 888887764 344 89999999874 1 2
Q ss_pred --CceEeeehhhhcCCCh-hHHHHHHHHHHHHhccCC
Q 038208 191 --PADAFLFKLVFHGLGD-EDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d-~~~~~il~~~~~aL~pgG 224 (228)
..=.+++..+||+.+| ++...+++.++++|.||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS 184 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc
Confidence 1346789999999987 788999999999999984
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.8e-06 Score=69.66 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
-+.++|||||||+|.++..-+++. ..+++++|-.++++.+.+ .+.|+++.|.+.+ .+| ..|+|+.-|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 357899999999999999999987 668999998777766653 5679999998877 566 49999888776
Q ss_pred cCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
+..- +.....+|-.==+.|+|||.
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCce
Confidence 6543 33333444444567889875
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=68.18 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=57.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEe----CCCCCCC--C--CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIA----GDMFQFV--P--PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~----gD~~~~~--p--~~D~v 195 (228)
...++||||||+|.....++.+.++.+++++|+ |..++.|++ .++|++.. .++++.+ + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999988998999999999999 888877764 35787754 2344422 2 49999
Q ss_pred eehhhhcCCChh
Q 038208 196 LFKLVFHGLGDE 207 (228)
Q Consensus 196 ~~~~vlh~~~d~ 207 (228)
+++=-+|.-.++
T Consensus 194 vcNPPf~~s~~e 205 (321)
T PRK11727 194 LCNPPFHASAAE 205 (321)
T ss_pred EeCCCCcCcchh
Confidence 999988865544
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=64.96 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CceEeeehhhhcCCChhHHH
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP-PADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~~d~~~~ 210 (228)
+..++||||.|.|..+..++..+.+ +.+-+. +.|....++ ..++++..|=....+ .||+|.+.++|---.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998877 555677 666655543 445555443333223 59999999999655555 7
Q ss_pred HHHHHHHHHhccCCC
Q 038208 211 KILKKRREAIASNGE 225 (228)
Q Consensus 211 ~il~~~~~aL~pgG~ 225 (228)
.+|+.++++|+|+|.
T Consensus 169 ~LL~~i~~~l~p~G~ 183 (265)
T PF05219_consen 169 TLLRDIRRALKPNGR 183 (265)
T ss_pred HHHHHHHHHhCCCCE
Confidence 899999999999964
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=61.77 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=65.9
Q ss_pred hhhhcccCccHHHHHHHHHHhcc----chhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHH
Q 038208 93 FWEFLNQNPGINQRFNEAMASDS----EIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHV 168 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 168 (228)
-++.+.++|+....|+..-+... ......+++ .+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~-~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~ 104 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIE-WLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP 104 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHH-HHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC
Confidence 34566778877666666554332 223344454 332 124457899999999999966542 357899998221
Q ss_pred HhcCCCCCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 169 VANLPETDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 169 i~~a~~~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++ +...|+.+ |++. .|+++++-.|-.-+ -...++++.+.|||||.
T Consensus 105 ------n~~--Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 105 ------NPR--VTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGI 153 (219)
T ss_dssp ------STT--EEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEE
T ss_pred ------CCC--EEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcE
Confidence 233 56689966 7763 89999888774321 25789999999999973
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.4e-06 Score=71.32 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=66.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C---C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQF---V---P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~~---~---p-~~D~v 195 (228)
.+..+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++. + . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998876643 3458999999 888877664 2 4799999999872 1 2 49999
Q ss_pred eehhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
++.-.--.-+. ..-..+++.+.+.|+|||.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 87643211111 1234566678899999974
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.8e-06 Score=76.30 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
.+..+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ . ++++++.+|.++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45689999999999999999986 3347999999 888887764 2 5899999998762 23 59999874
Q ss_pred hhh--------cCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVF--------HGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vl--------h~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
--- ..+ ....-..+++.+.+.|+|||.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~ 651 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGT 651 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCE
Confidence 211 001 112346788999999999974
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=68.55 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++|+.+|+.+. .. .+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4579999999999999999985 468999999 888887764 35799999999662 22 48998876
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=65.83 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=74.8
Q ss_pred HHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 038208 106 RFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE----- 174 (228)
Q Consensus 106 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----- 174 (228)
.|...|...++.. +..++. .++ +....+||+-|.|+|.++..|++. .|..++.-+|. ++..+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~-~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILM-RLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHH-HTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcceeeCchHHHHHH-HcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 3555555544432 223444 444 678899999999999999999985 58999999998 777777664
Q ss_pred --CCCeEEEeCCCCC-CCC-----CceEeeehhhhcCCChhHHHHHHHHHHHHh-ccCCC
Q 038208 175 --TDNLKYIAGDMFQ-FVP-----PADAFLFKLVFHGLGDEDGLKILKKRREAI-ASNGE 225 (228)
Q Consensus 175 --~~rv~~~~gD~~~-~~p-----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL-~pgG~ 225 (228)
.++|++..+|+.+ -++ .+|.|++ |+|++ -..+..+.++| +|||.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~ 141 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGR 141 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCce
Confidence 5789999999965 232 3898876 77776 46789999999 89964
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=67.82 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=58.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC--C-C
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ--F-V 189 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~--~-~ 189 (228)
...+++ .+. ..+...+||.+||.|.++..+++..| +.+++++|. |.+++.+++ .+|++++.+||.+ . .
T Consensus 8 l~Evl~-~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVD-ALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHH-hhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 345566 554 34567999999999999999999996 789999999 889887764 3689999999975 1 2
Q ss_pred C----CceEeee
Q 038208 190 P----PADAFLF 197 (228)
Q Consensus 190 p----~~D~v~~ 197 (228)
+ .+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 1 4676654
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=65.19 Aligned_cols=66 Identities=26% Similarity=0.517 Sum_probs=56.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
......||+||.|+|.++..++++ ..+++++++ |.+++...+ ....+++.||+++ ++|-+|.++.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeecc
Confidence 566789999999999999999998 677999998 888876653 5789999999999 78988888764
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=67.14 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---CC-----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP----GIKCTVLDL-PHVVANLPE------TDNLKY--IAGDMFQF---VP----- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~~------~~rv~~--~~gD~~~~---~p----- 190 (228)
.....+||+|||+|.-...|++... ..+++.+|+ .+.++.+.. .+.+++ +++||... +|
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 4556899999999998777766553 467999999 455544321 344555 89999652 21
Q ss_pred -CceEe-eehhhhcCCChhHHHHHHHHHHH-HhccCC
Q 038208 191 -PADAF-LFKLVFHGLGDEDGLKILKKRRE-AIASNG 224 (228)
Q Consensus 191 -~~D~v-~~~~vlh~~~d~~~~~il~~~~~-aL~pgG 224 (228)
...++ ++..++.+++++++..+|+++++ .|+|||
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSD 191 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 14444 67779999999999999999999 999985
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=64.68 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=71.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-------CC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V-------PP 191 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~-------p~ 191 (228)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .++|+++.||..+- + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45789999999999999999999874 779999999 777766653 68999999998662 1 25
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++=. ..+.-...+..+.+.|+|||+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeE
Confidence 99998753 344456778888899999975
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=63.73 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC----CC----CCceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA-NLPETDNLK-YIAGDMFQ----FV----PPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-~a~~~~rv~-~~~gD~~~----~~----p~~D~v~~~~vl 201 (228)
+..++||||||+|.++..++++ +..+++++|. +.++. ..+..+++. +...|+.. ++ +.+|+.+++..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 5679999999999999999987 4567999999 53444 455556654 33335442 12 237877766554
Q ss_pred cCCChhHHHHHHHHHHHHhcc
Q 038208 202 HGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~p 222 (228)
+|..+.+.|+|
T Consensus 154 ----------~l~~i~~~l~~ 164 (228)
T TIGR00478 154 ----------ILPELDLLLNP 164 (228)
T ss_pred ----------HHHHHHHHhCc
Confidence 35666666666
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=72.00 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hH-HHhcCCC-----CCCeEEEeCCCCC---CCCC--ceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PH-VVANLPE-----TDNLKYIAGDMFQ---FVPP--ADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~-~i~~a~~-----~~rv~~~~gD~~~---~~p~--~D~v~~~~v 200 (228)
+...+||||||.|.++..+++++|+..++++|+ .. +...+++ ..++.++++|+.. .+|. .|-+++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999998 33 3332221 5688889888732 3552 677766554
Q ss_pred hcCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
=- |+.. -...+|+.+++.|+|||.
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 21 4321 135689999999999974
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.1e-05 Score=49.63 Aligned_cols=27 Identities=59% Similarity=0.997 Sum_probs=23.6
Q ss_pred HHHHHHHHcChhhHhhhCC-CCcCHHHH
Q 038208 8 MSLKCAIELSIADIIHCHG-RAITLSEL 34 (228)
Q Consensus 8 ~~L~~a~~lglfd~L~~~~-~p~t~~el 34 (228)
++|++|+||||||.|...| +|+|++|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~ei 28 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEI 28 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHH
Confidence 5899999999999999986 79999993
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-05 Score=70.93 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=51.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C---C-CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V---P-PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~---p-~~D~v~ 196 (228)
..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+. + . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999999874 47999999 888887764 46899999998642 1 1 378887
Q ss_pred e
Q 038208 197 F 197 (228)
Q Consensus 197 ~ 197 (228)
+
T Consensus 368 ~ 368 (431)
T TIGR00479 368 L 368 (431)
T ss_pred E
Confidence 5
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=62.10 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=58.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--C-C-ceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V--P-P-ADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~--p-~-~D~v~~ 197 (228)
...+|||++||+|.++.+++.+... +++.+|. +..++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999999999753 7999999 677765543 35799999999652 1 1 2 566665
Q ss_pred hhhhcCCChhHHHHHHHHHHH--HhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRRE--AIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~--aL~pgG 224 (228)
-=....... ..++..+.+ .|+++|
T Consensus 128 DPPy~~~~~---~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 128 DPPFFNGAL---QALLELCENNWILEDTV 153 (189)
T ss_pred CcCCCCCcH---HHHHHHHHHCCCCCCCe
Confidence 433322112 333444433 466665
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=60.78 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-- 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-- 191 (228)
..+++ ... ..+..+|++||+|.|.++..++++... ++++++ +..++..++ .++++++.+|+.+ ++|.
T Consensus 20 ~kIv~-~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVE-AAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHH-hcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 44555 443 445789999999999999999999655 777776 555554443 6899999999998 7774
Q ss_pred -ceEeeehhhhcCCChhHHHHHHH
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILK 214 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~ 214 (228)
++. +..+.-++.+.+-..+++.
T Consensus 95 ~~~~-vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 95 QPYK-VVANLPYNISSPILFKLLE 117 (259)
T ss_pred CCCE-EEEcCCCcccHHHHHHHHh
Confidence 344 4445555566554444443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=61.58 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=64.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CC--CeEEEeCCCCC---CCCCceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE----TD--NLKYIAGDMFQ---FVPPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~----~~--rv~~~~gD~~~---~~p~~D~v~~~~vl 201 (228)
.+.+|||+|+|+|..+-++.+.+|.+ +++++|. +.+++.++. .. +......++.. +++..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46799999999999999998888855 5899998 777765442 11 11111122221 34457999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcc
Q 038208 202 HGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~p 222 (228)
-.++++....+++++-+.+.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC
Confidence 999988888888888666543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.8e-06 Score=73.20 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCCCC---CCCC--ceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVL---DL-PHVVANLPETDNLKYIAGDMFQ---FVPP--ADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p~--~D~v~~~~vlh~ 203 (228)
..+++||||||+|.++..++++. +..+-+ |- +..+.-|-+ -.|-.+-+-+.+ |+|. ||+|.+..++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999983 332222 22 222222221 112222222212 6774 999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCC
Q 038208 204 LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG 224 (228)
|.+.+ -.+|-.+-+.|+|||
T Consensus 194 W~~~~-g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGG 213 (506)
T ss_pred chhcc-cceeehhhhhhccCc
Confidence 98776 468999999999997
|
; GO: 0008168 methyltransferase activity |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.9e-05 Score=61.64 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=51.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCC----CCCC---C-ceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMF----QFVP---P-ADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~----~~~p---~-~D~ 194 (228)
+.+...++|+|||+|..+..++...|+.+++++|. +..+..+.+ .+++..+..++. .+.+ + .|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 34566899999999999999999999999999999 666655543 788888865553 3333 2 677
Q ss_pred eeeh
Q 038208 195 FLFK 198 (228)
Q Consensus 195 v~~~ 198 (228)
++.+
T Consensus 226 lvsN 229 (328)
T KOG2904|consen 226 LVSN 229 (328)
T ss_pred EecC
Confidence 7654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.9e-05 Score=58.71 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=68.2
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPE----------------TDNLKYIA 182 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~----------------~~rv~~~~ 182 (228)
+++ .++..+.+..++||||.|+|.++..++.-- +....+++|+ |++++.+++ ..++.++.
T Consensus 72 ~le-~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALE-YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHH-HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 344 444346678899999999999999888643 3333488998 888875442 56799999
Q ss_pred CCCCCC---CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 183 GDMFQF---VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 183 gD~~~~---~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
||-..- ...||.|++.- .+.++.+++...|+|||
T Consensus 151 GDgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKPGG 187 (237)
T ss_pred CCccccCCccCCcceEEEcc--------CccccHHHHHHhhccCC
Confidence 999773 33599998772 23456778888888885
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.1e-05 Score=59.80 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEeCCCCC-CCC--CceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TD--NLKYIAGDMFQ-FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~--rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~ 204 (228)
...+++||||+-|.....+..+. --+.+.+|. -.|++.++. .+ .++...+|=.. ++. .+|+++.+..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 46799999999999999999986 346889998 678887765 22 34455566433 444 49999999999955
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|- ..-+.++..+|||+|.
T Consensus 151 NdL--Pg~m~~ck~~lKPDg~ 169 (325)
T KOG2940|consen 151 NDL--PGSMIQCKLALKPDGL 169 (325)
T ss_pred ccC--chHHHHHHHhcCCCcc
Confidence 543 5678999999999975
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.9e-05 Score=67.09 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=51.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V-PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~-p~~D~v~~~ 198 (228)
...+|||++||+|.++..++.+ ..+++++|. +..++.+++ .++++++.+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3579999999999999999965 468999999 888877664 35899999998652 1 248988775
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=56.91 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=74.6
Q ss_pred hhhhcccCccHHHHHHHHHHhccc----hhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHH
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSE----IMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHV 168 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 168 (228)
.++.+.++|.....|+...+..-. -....+++ .+. .-++...|-|+|||.+.++.. -..+++-+||-.
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~-~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a- 209 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIR-KIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA- 209 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHH-HHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec-
Confidence 345556778777777666554322 12334444 333 135667899999999998862 123578888722
Q ss_pred HhcCCCCCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 169 VANLPETDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 169 i~~a~~~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+-+++..|+.. |++. .|+++++-.|-.- ....+++++++.|+|||.
T Consensus 210 -------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 210 -------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGL 259 (325)
T ss_pred -------CCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCce
Confidence 223346788887 6663 8998877766421 236789999999999974
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=62.45 Aligned_cols=88 Identities=23% Similarity=0.451 Sum_probs=68.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCC----Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQFVP----PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~~p----~~ 192 (228)
.+.++||-+|||.|..++++++ ||+. +++.+|+ |.|++.+++ .+|++++..|.++-+. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 7865 7999999 999998773 6899999999988322 37
Q ss_pred eEeeehhhhcCCChhH--------HHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDED--------GLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~--------~~~il~~~~~aL~pgG~ 225 (228)
|+++. |++|+. ...+-+-+.+.|+++|.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGL 402 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCce
Confidence 77654 444432 34567778888999864
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=59.85 Aligned_cols=91 Identities=18% Similarity=0.317 Sum_probs=62.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP- 191 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~- 191 (228)
+..+++ .++ ..+...|||||+|.|.++..|++.. .+++++|. +..++..++ .++++++.+|+++ +.+.
T Consensus 19 ~~~Iv~-~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVD-ALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHH-HHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHH-hcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 344555 554 5578999999999999999999997 77899998 666655443 6899999999988 4333
Q ss_pred ---ceEeeehhhhcCCChhHHHHHHHHHHH
Q 038208 192 ---ADAFLFKLVFHGLGDEDGLKILKKRRE 218 (228)
Q Consensus 192 ---~D~v~~~~vlh~~~d~~~~~il~~~~~ 218 (228)
..+.++.+.-++.+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 344455555444443 45555444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=55.89 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=69.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------V 189 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~ 189 (228)
.++.+ .+. .+.+..+|+|+|+-+|.|+..++++. +..+++++|+.++-. .+.|.++.+|++.+ +
T Consensus 34 ~el~~-k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 34 LELNE-KFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHH-hcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 34444 553 46788999999999999999888876 456799999844333 45699999999873 2
Q ss_pred CC--ceEee---ehhhhcCCC------hhHHHHHHHHHHHHhccCCC
Q 038208 190 PP--ADAFL---FKLVFHGLG------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p~--~D~v~---~~~vlh~~~------d~~~~~il~~~~~aL~pgG~ 225 (228)
+. +|+|+ ..++--.|. -.-+...+.-+.+.|+|||+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCe
Confidence 22 58886 333322332 23455567777888999975
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=54.43 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFV--PPADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~--p~~D~v~~~~v 200 (228)
...++|||||+|..+..+++.. |+.-....|+ |+.++...+ ..++..+..|+.+.+ .+.|+++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 6789999999999999998875 7888999999 887775433 455778888887732 24787777653
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=63.61 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCCceEeeehhhhcC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VPPADAFLFKLVFHG 203 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p~~D~v~~~~vlh~ 203 (228)
..+|||++||+|.++..++++.+..+++++|+ |..++.+++ .+++++..+|..+. .+.||+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 45899999999999999999887668999999 888877664 34577899998652 23599998742 2
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ...++..+.+.++|||+
T Consensus 135 -Gs--~~~~l~~al~~~~~~gi 153 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKRGGL 153 (382)
T ss_pred -CC--cHHHHHHHHHHhcCCCE
Confidence 11 14577887888899875
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.6e-05 Score=55.23 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--C-ceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--P-ADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~-~D~v~~~~vlh 202 (228)
...++.|+|||.|.+. ++-.+|.. .++++|+ |+.++.... .-++.+++.|+.++.+ + ||..+++.-+.
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 4679999999999998 44456655 5899999 888887664 4467899999988544 3 89988877654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=53.37 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=57.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--CCCceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQF--VPPADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~--~p~~D~v 195 (228)
.+..+|+|+|||.|.++..++.. .|+++++++|. +..++.+.. ..++++..+++... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 27899999998 666655442 35677777776542 2347888
Q ss_pred eehhhhcCCChhH
Q 038208 196 LFKLVFHGLGDED 208 (228)
Q Consensus 196 ~~~~vlh~~~d~~ 208 (228)
+--|.--+.++.-
T Consensus 104 vgLHaCG~Ls~~~ 116 (141)
T PF13679_consen 104 VGLHACGDLSDRA 116 (141)
T ss_pred EEeecccchHHHH
Confidence 8777777777653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=56.93 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=53.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
....++|||||++|.|+..++++ +.+++++|...+-......++|+++.+|-+...| .+|++++=.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 46789999999999999999998 5699999986666666668899999999887433 3777766544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=6.9e-05 Score=57.63 Aligned_cols=62 Identities=21% Similarity=0.466 Sum_probs=46.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--C-ceEeeeh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP--P-ADAFLFK 198 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p--~-~D~v~~~ 198 (228)
.+|+|+-||.|.-++.+++.+. +++.+|+ |..++.++. .+||+++++|+++. +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3799999999999999999964 4899998 777776653 67999999999872 22 2 7999865
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00024 Score=56.76 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=61.6
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCC-----CceEeeehhhhcCCC-hh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-FVP-----PADAFLFKLVFHGLG-DE 207 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~~p-----~~D~v~~~~vlh~~~-d~ 207 (228)
-++|||||=+...... .++-+.++-+||.+. .+. +...||++ |+| .||+|.++-||.+.| +.
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~~~--I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------HPG--ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCCC------CCC--ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 5999999876554433 355677999998331 122 36679988 777 299999999999998 46
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
++-.+|+++++.|+|+|.
T Consensus 122 ~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 777889999999999975
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=62.84 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=43.5
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 888887764 3579999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=53.18 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=62.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeC-CCCCC---------CCC--ceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAG-DMFQF---------VPP--ADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~g-D~~~~---------~p~--~D~v~~ 197 (228)
+.+..+|||+||.+|.|+.-..++. |+..+.++|+-.+.. .+.++++++ |+..| +|. .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5678899999999999999777776 999999999855443 456666666 66543 343 677764
Q ss_pred hhhh---------cCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVF---------HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vl---------h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-+.- |.-.-+-|..+|.-+...+.|+|+
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~ 179 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGS 179 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcE
Confidence 3221 222335566666666677778864
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=52.47 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCCC--ceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-----TDNLKYIAGDMFQ---FVPP--ADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-----~~rv~~~~gD~~~---~~p~--~D~v~~~~v 200 (228)
..+..+||.||=|-|.....+.++.|..+.++---|+|....+. .++|..+.|-... .+|+ ||=|+.-..
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999999999989888887767999987764 6788888885543 4553 777654432
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-- .-++.+.+.+.+.+.|||+|+
T Consensus 179 ~e--~yEdl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 179 SE--LYEDLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred hh--HHHHHHHHHHHHhhhcCCCce
Confidence 11 126668889999999999976
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=59.27 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=68.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCC-ceEee---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVPP-ADAFL--- 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p~-~D~v~--- 196 (228)
....+|||+++++|.=+..|++...+ ..++..|+ +.-+..+++ ..+|.+...|... .++. ||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 46689999999999999999998754 57999998 555544432 4678888888754 2343 89987
Q ss_pred -ehh---------hhcCCChhHH-------HHHHHHHHHHhccCCC
Q 038208 197 -FKL---------VFHGLGDEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 197 -~~~---------vlh~~~d~~~-------~~il~~~~~aL~pgG~ 225 (228)
++. +...|+.++. .+||+++.+.|||||.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 331 2334554433 7899999999999974
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00019 Score=57.18 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=62.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C-CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV-P-PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~-p-~~D~v~~~~v 200 (228)
..+..+|+|.-||.|.++..+++..+..+++..|+ |..++-+++ .++|..+.+|..+-. . .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999999877888999999 877765442 678999999997733 2 489777654
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|. .+..+|..+.+.+++||+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKEGGI 197 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEEEEE
T ss_pred ----hH-HHHHHHHHHHHHhcCCcE
Confidence 32 234678888888888864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00018 Score=62.64 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=43.2
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 7999999 888877664 3589999999865
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00014 Score=56.85 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C----CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------V----PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~----p~~D~v~~~ 198 (228)
+..++||+||++|.|+..++++. +..+++++|+...- ....+.++.+|+.++ . ..+|+|++=
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999998 77899999994431 135666667776541 1 137888654
Q ss_pred hh---hcCC------ChhHHHHHHHHHHHHhccCC
Q 038208 199 LV---FHGL------GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~v---lh~~------~d~~~~~il~~~~~aL~pgG 224 (228)
.. -.++ .-+.+...|.-+.+.|+|||
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG 133 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGG 133 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 42 1111 11333444555556689997
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00062 Score=50.87 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=42.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
+++|||||.|.++..+++.+|..+++++|. |...+.+++ ..+++++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 589999999999999999999999999998 777765543 2457777766654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00023 Score=56.13 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=59.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCeEEEeCCCCCCCCC-ceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA-------NLPE------TDNLKYIAGDMFQFVPP-ADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-------~a~~------~~rv~~~~gD~~~~~p~-~D~v~~ 197 (228)
....+.|||||.|.++..+...+|+.-++++++ -.|.+ .++. ..++.++..+.+.-+|. |.--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 446799999999999999999999999999987 33332 2221 45677777776665553 222222
Q ss_pred hhhhcCCChh-----------HHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDE-----------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~-----------~~~~il~~~~~aL~pgG~ 225 (228)
+-.++.+||+ -+..++.+..=.|++||.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~ 178 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGI 178 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCce
Confidence 2222223322 124567777778888865
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00083 Score=52.47 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=69.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCceEeeehhhhcCCCh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPPADAFLFKLVFHGLGD 206 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~~d 206 (228)
.++.|+|.|+|.++.-.+++ .-+++.++. |...+-+.+ ..+++++.||... ++..+|+|++-..=.-+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58999999999999877766 557899988 666555554 5789999999988 7877999987765444556
Q ss_pred hHHHHHHHHHHHHhccCC
Q 038208 207 EDGLKILKKRREAIASNG 224 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG 224 (228)
++...+++.+.+-|+-.+
T Consensus 112 E~qVpV~n~vleFLr~d~ 129 (252)
T COG4076 112 EKQVPVINAVLEFLRYDP 129 (252)
T ss_pred ccccHHHHHHHHHhhcCC
Confidence 666788888888887664
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=51.80 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=52.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIK---------CTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-- 190 (228)
+.+...|+|-=||+|.++++.+...++.. +++.|+ +.+++.++. ...|.+...|+.+ +++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888777766 999999 888876653 5679999999988 533
Q ss_pred CceEeeehhhhcC
Q 038208 191 PADAFLFKLVFHG 203 (228)
Q Consensus 191 ~~D~v~~~~vlh~ 203 (228)
.+|+|++.--.-.
T Consensus 106 ~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 106 SVDAIVTNPPYGR 118 (179)
T ss_dssp BSCEEEEE--STT
T ss_pred CCCEEEECcchhh
Confidence 3899888765543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0024 Score=46.79 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=57.9
Q ss_pred EEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---CceEeeehhhhc
Q 038208 137 LVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-T--DN---LKYIAGDMFQ---FVP---PADAFLFKLVFH 202 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-~--~r---v~~~~gD~~~---~~p---~~D~v~~~~vlh 202 (228)
++|+|||+|... .+.+..+. ..++++|. +.++...+. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 44444443 47788898 655554332 1 11 6788888764 333 38999 555544
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.+ ....++++.+.++|+|.
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~ 150 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGR 150 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcE
Confidence 4444 57899999999999864
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00092 Score=53.99 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=66.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCC--CceEeee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ---FVP--PADAFLF 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~---~~p--~~D~v~~ 197 (228)
+...+|||.+.|-|.++++.+++.. ..++-++- |.|++.|.. ..+|+++.||..+ .++ +||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi- 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII- 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence 4578999999999999999999842 35666665 888887763 4479999999987 455 388764
Q ss_pred hhhhcCCC------hhHHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLG------DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~------d~~~~~il~~~~~aL~pgG 224 (228)
||-| .--...+-+++++.|+|||
T Consensus 211 ----HDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 211 ----HDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----eCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 5433 2345678999999999996
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=52.69 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC----CeEEEeec-hHHHhcCC-----C--CCCeEEEeCCCCC---CCCC---ce
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG----IKCTVLDL-PHVVANLP-----E--TDNLKYIAGDMFQ---FVPP---AD 193 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dl-p~~i~~a~-----~--~~rv~~~~gD~~~---~~p~---~D 193 (228)
-+..+++|+|.|+..=++.+...+.+ ++++-+|+ ..++.... + .-.|.-+++|+.. .+|. ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887766 78999999 44443221 2 4457778899865 2442 34
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.+++...|.++++++|..+|.+++.+|.||-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 4578889999999999999999999999983
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00098 Score=52.47 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=61.4
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCCh
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLGD 206 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~d 206 (228)
+++|||.|.|.=+.-++=.+|+.+++++|- . ..+..+.. .++++++++.+.+ ..+ .||+++++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 2 22332221 5789999999977 333 599999998641
Q ss_pred hHHHHHHHHHHHHhccCC
Q 038208 207 EDGLKILKKRREAIASNG 224 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG 224 (228)
...++.-+...++|||
T Consensus 127 --l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGG 142 (184)
T ss_dssp --HHHHHHHHGGGEEEEE
T ss_pred --HHHHHHHHHHhcCCCC
Confidence 2467777777888886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=53.32 Aligned_cols=90 Identities=14% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCeEEEecCCCcHHHH-HHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCCceEeeehh
Q 038208 134 LGSLVDVGGGNGSFSR-IISEAF-PGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ---FVPPADAFLFKL 199 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~-~l~~~~-p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~---~~p~~D~v~~~~ 199 (228)
+.+|+=||+|+=-++. .+++++ ++..++++|+ |+.++.+++ ..+++|+++|..+ ++.++|+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4699999999766554 555443 7888999999 777776643 6899999999976 245799998877
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..- ...++..+||.++.+.|+||.
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTS
T ss_pred hcc-cccchHHHHHHHHHhhCCCCc
Confidence 663 444566899999999999984
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=54.22 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
+.+.+|+|||||---++.-.....|+.+++++|+ +..++.... ..+.+....|..+..| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999999998888889999999999 666665443 5678888889998655 3999999999987
Q ss_pred CChh
Q 038208 204 LGDE 207 (228)
Q Consensus 204 ~~d~ 207 (228)
+...
T Consensus 184 le~q 187 (251)
T PF07091_consen 184 LERQ 187 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0039 Score=49.04 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
+-..++|||+|.|+|..++.-++.. ...++.-|+ |..+..++. .-.|.+...|..-+-|.+|+++...++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999999888764 334666676 555554442 446788888886655579999999999766
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 038208 205 GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG 224 (228)
+. +.+++. ....++-.|
T Consensus 156 ~~--a~~l~~-~~~~l~~~g 172 (218)
T COG3897 156 TE--ADRLIP-WKDRLAEAG 172 (218)
T ss_pred hH--HHHHHH-HHHHHHhCC
Confidence 53 456666 666665554
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.002 Score=51.61 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=54.0
Q ss_pred EEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--C-ceEeeehhhhcCCC
Q 038208 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--P-ADAFLFKLVFHGLG 205 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~-~D~v~~~~vlh~~~ 205 (228)
|.||||-.|.+...++++..--+++..|+ +.-++.|++ .++|++..+|=++.++ + .|+|++.-+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999988888999999 777776653 6899999999888654 3 78887665322
Q ss_pred hhHHHHHHHHHH
Q 038208 206 DEDGLKILKKRR 217 (228)
Q Consensus 206 d~~~~~il~~~~ 217 (228)
.....||.+..
T Consensus 78 -~lI~~ILe~~~ 88 (205)
T PF04816_consen 78 -ELIIEILEAGP 88 (205)
T ss_dssp -HHHHHHHHHTG
T ss_pred -HHHHHHHHhhH
Confidence 33445555443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0098 Score=56.32 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=63.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC------------------------------------------CCCeEEEeec-hHH
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF------------------------------------------PGIKCTVLDL-PHV 168 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p~~~~~~~Dl-p~~ 168 (228)
.+...++|-.||+|.++++.+... +..+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 346799999999999999876531 1236899999 888
Q ss_pred HhcCCC-------CCCeEEEeCCCCC-CCC----CceEeeehhhhcC-CC-hhHHHHHHHHHHHHhc
Q 038208 169 VANLPE-------TDNLKYIAGDMFQ-FVP----PADAFLFKLVFHG-LG-DEDGLKILKKRREAIA 221 (228)
Q Consensus 169 i~~a~~-------~~rv~~~~gD~~~-~~p----~~D~v~~~~vlh~-~~-d~~~~~il~~~~~aL~ 221 (228)
++.++. .++|++..+|+.+ +.+ .+|+|+++--.-. +. +++...+.+.+.+.++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 887764 4679999999977 332 3899887754322 33 3445566666666665
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0027 Score=51.11 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=64.3
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCC--CCCC-ceEeeehhhhcC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQ--FVPP-ADAFLFKLVFHG 203 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~--~~p~-~D~v~~~~vlh~ 203 (228)
..+++|||.|.|.=+.-++=.+|+++++++|- . ..++.+.. .++++++++.+.+ +.+. ||+|+++-+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999998899999999995 2 33343332 6789999998866 2335 99999887541
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ..++.-+...+++||.
T Consensus 147 L-----~~l~e~~~pllk~~g~ 163 (215)
T COG0357 147 L-----NVLLELCLPLLKVGGG 163 (215)
T ss_pred h-----HHHHHHHHHhcccCCc
Confidence 2 3455666677777654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00084 Score=57.23 Aligned_cols=91 Identities=24% Similarity=0.409 Sum_probs=59.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCe-EEEeechH----HHhcCCC---CCCeEEEeCCCCC---CCCCceEeeehhhhc
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDLPH----VVANLPE---TDNLKYIAGDMFQ---FVPPADAFLFKLVFH 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dlp~----~i~~a~~---~~rv~~~~gD~~~---~~p~~D~v~~~~vlh 202 (228)
+.++||||-|.|.-+-+.-.-+|+++ +++++... +++...+ ..+-..-..|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56799999999999999999999986 66666632 2222211 2222233344433 567677776666666
Q ss_pred CCC----hhHHHHHHHHHHHHhccCC
Q 038208 203 GLG----DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 203 ~~~----d~~~~~il~~~~~aL~pgG 224 (228)
.+- +......++++-..+.|||
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCC
Confidence 543 3334448899999999986
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0066 Score=47.78 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=62.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHh-----------cCCC--CCCeEEEeCCCCC-CCC-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVA-----------NLPE--TDNLKYIAGDMFQ-FVP-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~-----------~a~~--~~rv~~~~gD~~~-~~p-~~D~ 194 (228)
+....+|+|+=.|.|.|++-+.... |.-.+..+--.+... .+++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5678999999999999999888764 554444432112211 1111 3456666555544 223 3677
Q ss_pred eeehhhhcC-----CChhHHHHHHHHHHHHhccCCCC
Q 038208 195 FLFKLVFHG-----LGDEDGLKILKKRREAIASNGER 226 (228)
Q Consensus 195 v~~~~vlh~-----~~d~~~~~il~~~~~aL~pgG~~ 226 (228)
+.....-|+ ++...+.++.+.++++|||||+-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~ 162 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVY 162 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEE
Confidence 766544443 34567789999999999999874
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0051 Score=56.23 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--------C
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG--------IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF--------V 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~--------~ 189 (228)
...+|+|.+||+|.++.+++++.+. ..++++|+ +..+..++. ...++....|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987753 46799999 666665442 12455666665431 1
Q ss_pred CCceEeeehh
Q 038208 190 PPADAFLFKL 199 (228)
Q Consensus 190 p~~D~v~~~~ 199 (228)
+.||+|+.+=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 2489997654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0015 Score=53.98 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=56.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCC---------------------C-------------CC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLP---------------------E-------------TD 176 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~---------------------~-------------~~ 176 (228)
+..++||||+|+-.+- ++...+..+ ++..|. +.-.+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997663 333344443 777787 44332111 0 11
Q ss_pred CeE-EEeCCCCCC--C------CC-ceEeeehhhhcCC--ChhHHHHHHHHHHHHhccCC
Q 038208 177 NLK-YIAGDMFQF--V------PP-ADAFLFKLVFHGL--GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 177 rv~-~~~gD~~~~--~------p~-~D~v~~~~vlh~~--~d~~~~~il~~~~~aL~pgG 224 (228)
.|+ ++..|.+++ + |+ +|++++..+|..- +.++-.+.++++.+.|||||
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG 193 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG 193 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 244 667888772 2 33 9999999998764 34677899999999999996
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0026 Score=55.32 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCC--ceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~--~D~v~~~~vl 201 (228)
....++|+|||.|.....+..- -..+++++|. +.-+..... ..+..++.+|+.+ ++++ +|.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 3457999999999999988763 4667888887 333332221 5667779999988 6663 9999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.++- ..++++++++++|||.
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKPGGL 210 (364)
T ss_pred ccCCcH--HHHHHHHhcccCCCce
Confidence 888876 6899999999999974
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.013 Score=49.63 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=53.4
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
..++++ .+. ..+...+||.=+|.|..+..|+++.|+.+++++|. |.+++.+++ .+|++++.++|.+
T Consensus 9 l~Evl~-~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVE-GLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHH-hcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345555 443 34567999999999999999999998899999999 888877754 4689999999865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.018 Score=45.22 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=63.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCC-----C------CC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQF-----V------PP 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~~-----~------p~ 191 (228)
++...||-+|||-=.....+...+++++++-+|+|++++.-++ ..+++++..|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4456999999999999999999888999999999998875442 23467899999862 1 12
Q ss_pred -ceEeeehhhhcCCChhHHHHHHHHHH
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILKKRR 217 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~~~~ 217 (228)
.-++++-.++.+++++++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 57888888999999999999998764
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0015 Score=46.33 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=37.3
Q ss_pred EEecCCCcHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---CC--CceEeeehhhhc
Q 038208 138 VDVGGGNGSFSRIISEAFPGI---KCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQF---VP--PADAFLFKLVFH 202 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~~---~p--~~D~v~~~~vlh 202 (228)
|+||+..|..+..+++..+.. +++.+|. + ..-+..++ .++++++.+|..+- ++ .+|++++=- -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 6899998 5 23333332 67899999999652 33 488887654 22
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+....-++.+.+.|+|||+
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggv 100 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGV 100 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEE
T ss_pred --CHHHHHHHHHHHHHHcCCCeE
Confidence 235667889999999999975
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0083 Score=53.68 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=45.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMF 186 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~ 186 (228)
++....++|+-||||.++.++++. -.+++++++ |+.++.|+. ..+++|++|...
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 556689999999999999999986 467899998 888888774 678999999443
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.035 Score=46.18 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=71.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC----------CC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP---------ETDNLKYIAGDMFQFV----------PP- 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------~~~rv~~~~gD~~~~~----------p~- 191 (228)
.+...||.+|||-=.....+... +++++.=+|+|++++.-+ ...+++++..|+...+ |+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888776422 257888888899886422 2578999999986321 11
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.-++++-.++.+++++++.++|+.+.+...||+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 457788899999999999999999999887774
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.018 Score=48.86 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
..++++ .+. ..+...+||.=-|.|.++.+|++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~-~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLE-ALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHH-HHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHH-hhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 455566 554 45678999999999999999999999999999999 888866653 5899999999865
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.029 Score=45.29 Aligned_cols=90 Identities=10% Similarity=0.132 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHh-------cCCCCCCeEEEeCCCCCCC----C-----Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVA-------NLPETDNLKYIAGDMFQFV----P-----PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~-------~a~~~~rv~~~~gD~~~~~----p-----~~ 192 (228)
+-++++++|||.=+|.-+..++.+.|+ .+++.+|+ +...+ .|.-...|+++.++..+.+ + .|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 457899999999999999999999975 58999998 33333 2333788999999987632 1 38
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++= +|.+.- ...+.++.+.+++||+
T Consensus 151 DfaFvD----adK~nY-~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 151 DFAFVD----ADKDNY-SNYYERLLRLLRVGGV 178 (237)
T ss_pred eEEEEc----cchHHH-HHHHHHHHhhcccccE
Confidence 888763 355554 4889999999999986
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0058 Score=43.40 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
....++|||||+|.+..-|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999999988887 566888885
|
; GO: 0008168 methyltransferase activity |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.065 Score=44.44 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=63.3
Q ss_pred HHHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCC----C
Q 038208 105 QRFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLP----E 174 (228)
Q Consensus 105 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----~ 174 (228)
+.|..+|-..++.. ...++. .++ .....+||+-|.|+|.++.+|++.- |.-++.-+|. ..-.+.+. +
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~-~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILS-MLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHH-Hhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 44566666555432 334455 555 6778999999999999999999986 8888888988 33333333 2
Q ss_pred ---CCCeEEEeCCCCCC-CC----CceEeee
Q 038208 175 ---TDNLKYIAGDMFQF-VP----PADAFLF 197 (228)
Q Consensus 175 ---~~rv~~~~gD~~~~-~p----~~D~v~~ 197 (228)
.+++++...|.... ++ .+|.|++
T Consensus 153 hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 153 HGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred hCCCcceEEEEeecccCCccccccccceEEE
Confidence 78999999998762 33 2788765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0042 Score=48.85 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---C-CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V---P-PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~---p-~~D~v~~ 197 (228)
...+|||+=||+|.++.+.+.|. ..+++.+|. +..+..+++ .++++.+..|.+.. . . .||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999999985 347999998 666665543 45799999997652 1 2 4999987
Q ss_pred hhhhcCCChhHHHHHHHHHH--HHhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRR--EAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~--~aL~pgG 224 (228)
-=... .... ...++..+. ..|+++|
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~~~ 147 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNEDG 147 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEEEE
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCCCE
Confidence 64433 2221 245666665 5667664
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.023 Score=48.31 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-CC---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA-------FPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ-F-VP--- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~-~-~p--- 190 (228)
....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++. .....+..+|.+. + ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34568999999999999998874 47889999999 666554431 3345688899876 2 22
Q ss_pred CceEeeehhhhcC--CChh-----------------HHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHG--LGDE-----------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~--~~d~-----------------~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+++-..-. |.++ .-..++..+.+.|++||.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 4999986543322 1111 113478889999999974
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.03 Score=49.01 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred CeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--C--CCceEeeehhhhc
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF--V--PPADAFLFKLVFH 202 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~--~--p~~D~v~~~~vlh 202 (228)
-+|||.-||+|..+++++++.++ -+++..|+ |..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998765 46999999 888876654 34688999998762 1 2499988743 2
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+ ..++..+.+++++||.
T Consensus 124 Gs~----~~fld~al~~~~~~gl 142 (374)
T TIGR00308 124 GTP----APFVDSAIQASAERGL 142 (374)
T ss_pred CCc----HHHHHHHHHhcccCCE
Confidence 222 3578888899998864
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.015 Score=48.68 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeech-HHHhcCCC----------CCCeEEEeCCCCC---CCC--Cce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDLP-HVVANLPE----------TDNLKYIAGDMFQ---FVP--PAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dlp-~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D 193 (228)
.+++.+|+-||+|.|.++++..+. +.+ .+..+|+. .+++..++ .++|.++.||-+. ..+ .+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 357899999999999999999987 666 47888884 45544332 7899999999765 333 499
Q ss_pred EeeehhhhcCCCh--hHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d--~~~~~il~~~~~aL~pgG~ 225 (228)
+|+.-..=-.-|- --....+.-+.++|||+|+
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcE
Confidence 9875432111111 1123456678899999986
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.036 Score=44.49 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=61.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
.....+.||||-.+.+...+.+.+|...++..|+ +.-++.|.. .++++...+|-+.++. +.|++++.-+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3455699999999999999999999999999998 655554432 7899999999988543 3888876543
Q ss_pred hcCCChhHHHHHHHHHHHHh
Q 038208 201 FHGLGDEDGLKILKKRREAI 220 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL 220 (228)
= -...+.||.+-.+-|
T Consensus 95 G----G~lI~~ILee~~~~l 110 (226)
T COG2384 95 G----GTLIREILEEGKEKL 110 (226)
T ss_pred c----HHHHHHHHHHhhhhh
Confidence 2 233345555444443
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.035 Score=47.05 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEeCCCCC-CCC------C----
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQ-FVP------P---- 191 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~-~~p------~---- 191 (228)
+...||-+|||-=.-+..+- +| ++++.-+|+|++++.-++ ..++++++.|+++ +++ +
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 47899999999776665543 34 467777788999975322 3489999999995 433 1
Q ss_pred -ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.-++++-.++.++++++..++|++|....+||
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~g 202 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPG 202 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCC
Confidence 45778999999999999999999999998887
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.0044 Score=47.34 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCeEEEecCCCcHHH-HHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--C--C-CceEeee
Q 038208 134 LGSLVDVGGGNGSFS-RIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQF--V--P-PADAFLF 197 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~-~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~--~--p-~~D~v~~ 197 (228)
..+||++|||--.++ ..++...|...+.+-|- ...++..++ ..++..+.-+.... + . .||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999965555 45566668888999997 555544332 45666666555442 1 1 3999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..++ +=|+-...+.+.|..-|+|-|.
T Consensus 110 ADCl--FfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 110 ADCL--FFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred ccch--hHHHHHHHHHHHHHHHhCcccc
Confidence 9998 4456678899999999999864
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.15 Score=42.62 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech-HHH-------hc---CC----------------------C-----
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVV-------AN---LP----------------------E----- 174 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i-------~~---a~----------------------~----- 174 (228)
+..+||-=|||-|.++.+|+++ +..+.+.+.. .|+ .. .. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999998 5566777762 221 11 00 0
Q ss_pred ---------CCCeEEEeCCCCC--CCC----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ---------TDNLKYIAGDMFQ--FVP----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ---------~~rv~~~~gD~~~--~~p----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+++...|||.+ +.+ .+|+|+..+.+-- -+....-|+.|++.|||||.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCE
Confidence 3579999999988 223 3999988865532 24467889999999999973
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.02 Score=51.05 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=51.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-CC---CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ--F-VP---PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~--~-~p---~~D~v~~ 197 (228)
..+..+|+|+=||.|.++..++++ ..+++++|+ |+.++.|++ .++++|+.+|..+ + .. .+|+|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346679999999999999999965 567999999 888887764 5679999999876 2 21 3677654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=44.99 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGI---------------------------------------KCTVLDL-PHVVA 170 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~~~~Dl-p~~i~ 170 (228)
|.....++|==||+|+++++.+-..+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4555799999999999999988877642 2679999 88888
Q ss_pred cCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhhcC-CChhH-HHHHHHHHHHHh
Q 038208 171 NLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHG-LGDED-GLKILKKRREAI 220 (228)
Q Consensus 171 ~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~-~~d~~-~~~il~~~~~aL 220 (228)
.|+. .+.|+|..+|+.. +-| .+|+|+++-.--. +.++. ...+-+..-+.|
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 7763 7889999999976 333 5898887754332 23332 222444444444
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.049 Score=46.90 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=64.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--FV-PPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~~-p~~D~v~~~~v 200 (228)
....+|||.=+|.|.++..+++...-. ++.+|+ |..++-+++ .++|+.+.||..+ +. +.||-|+|...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 348899999999999999999975333 999999 887765543 5669999999987 33 45999998875
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
- .+.+.+-.+.+.+++||
T Consensus 266 ~------~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 266 K------SAHEFLPLALELLKDGG 283 (341)
T ss_pred C------cchhhHHHHHHHhhcCc
Confidence 4 12345555566666664
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.16 Score=45.94 Aligned_cols=123 Identities=17% Similarity=0.302 Sum_probs=78.3
Q ss_pred hhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhc-cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hH
Q 038208 94 WEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIF-EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PH 167 (228)
Q Consensus 94 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~ 167 (228)
|+-+++||-....|++++- ..+++ ..+.+- +....++-+|+|.|-+..+..+. ...++.++++- |.
T Consensus 335 YetFEkD~VKY~~Yq~Ai~-------~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAIL-------KALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhccchHHHHHHHHHH-------HHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 5666677777777776642 22233 322111 12456788999999988876664 23456777776 65
Q ss_pred HHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 168 VVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 168 ~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
.+--.+. ..||+++..||.+ +-| .+|+++. ..|..+.| |-...-|..+-..|||+|+
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgI 473 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGI 473 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCce
Confidence 5543332 7899999999988 444 4887754 34444443 3344458888899999975
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.2 Score=44.00 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCcHHHHH--------HHHH-------CCCCeEEEeechH-----HHhcCC---------------CCCC
Q 038208 133 GLGSLVDVGGGNGSFSRI--------ISEA-------FPGIKCTVLDLPH-----VVANLP---------------ETDN 177 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~--------l~~~-------~p~~~~~~~Dlp~-----~i~~a~---------------~~~r 177 (228)
+.-+|+|+|||+|..+.. +.++ -|++++..-|+|. +..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 466899999999966542 3333 2568888889872 111111 0111
Q ss_pred ---eEEEeCCCCC-CCCC--ceEeeehhhhcCCC
Q 038208 178 ---LKYIAGDMFQ-FVPP--ADAFLFKLVFHGLG 205 (228)
Q Consensus 178 ---v~~~~gD~~~-~~p~--~D~v~~~~vlh~~~ 205 (228)
+.-++|.|.. -+|. .++++.++.||.++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 4456678887 4673 89999999999765
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.05 Score=46.01 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=65.8
Q ss_pred CeEEEecCCCcHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC-----------------
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--------------------PGIKCTVLDL---PHVVANLPE----------------- 174 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---p~~i~~a~~----------------- 174 (228)
.+||-||||.|.=..+++..+ |.+.++++|+ ..|+.....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999988666666555 2368999998 355543210
Q ss_pred ------CCCeEEEeCCCCC-CC---------CCceEeeehhhhcCC---ChhHHHHHHHHHHHHhccC
Q 038208 175 ------TDNLKYIAGDMFQ-FV---------PPADAFLFKLVFHGL---GDEDGLKILKKRREAIASN 223 (228)
Q Consensus 175 ------~~rv~~~~gD~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~il~~~~~aL~pg 223 (228)
.-+++|.+.|+++ .. |..++|.+-++++-+ +..+..++|.++-..++||
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G 235 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG 235 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence 2358999999987 22 236899888887753 4567789999999999998
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.024 Score=49.27 Aligned_cols=49 Identities=29% Similarity=0.491 Sum_probs=37.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDM 185 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~ 185 (228)
..|||+=||.|.++..+++.. -+++++|. +++++.|++ .++++|+.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 389999999999999999875 46999998 888887764 57899998764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.028 Score=45.19 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~ 187 (228)
....|+|.-||-|.-.+.++.++|. ++.+|+ |.-|.-|+. .+||+|++||++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 6789999999999999999999876 677888 766666654 6799999999976
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.045 Score=48.05 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC----C---CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV----P---PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~----p---~~D~v 195 (228)
...+|||+=|=||.++...+.. +. ++|.+|+ ...++-+++ ..++.++.+|.|+-+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4789999999999999998886 44 7999999 677776654 577999999998832 2 39999
Q ss_pred eehhh------hcCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLV------FHGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~v------lh~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
++==. =.-|+ ..+-..++..+.+.|+|||+
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCE
Confidence 76211 11132 23456789999999999975
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.014 Score=46.46 Aligned_cols=87 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAG-DMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~g-D~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
.+.++||+|.|.|..+..++..+.+ +..-++ ..|..+.++ .+.+++.. +..+.--.+|+|.+.++|--.-++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 4689999999999999888765543 333344 334444443 12222211 111111138999999999655555 7
Q ss_pred HHHHHHHHHhcc-CC
Q 038208 211 KILKKRREAIAS-NG 224 (228)
Q Consensus 211 ~il~~~~~aL~p-gG 224 (228)
++|+.++.+|+| +|
T Consensus 187 kLL~Di~~vl~psng 201 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNG 201 (288)
T ss_pred HHHHHHHHHhccCCC
Confidence 899999999998 53
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.42 Score=41.16 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=67.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCC--ceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAG-DMFQ-FVPP--ADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~g-D~~~-~~p~--~D~v~~~~v 200 (228)
.....|+|==||||.++++..-- ++++++.|+ ..++..++. .+...++.. |+.. |+++ +|.|..=--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 45669999999999999987765 788999999 678877765 244555555 8877 7775 787754221
Q ss_pred ------hcCC-ChhHHHHHHHHHHHHhccCC
Q 038208 201 ------FHGL-GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 ------lh~~-~d~~~~~il~~~~~aL~pgG 224 (228)
..-- -++--.++|..+.+.|++||
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG 304 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGG 304 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence 2211 25667889999999999986
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.13 Score=43.39 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=52.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
.+.++ .+. .......||.==|.|.++..|++++|+.. ++++|. |.+++.+++ .+|++++.++|.+
T Consensus 13 ~E~i~-~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVE-LLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHH-hcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 44455 443 34568999999999999999999999765 999999 899988875 6799999998754
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.2 Score=40.10 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=46.7
Q ss_pred cCCCeEEEecC---CCcHHHHHHHHHC-CCCeEEEeec-h-HHHhcCCC----CCCeEEEeCCCCCC-----CC----Cc
Q 038208 132 EGLGSLVDVGG---GNGSFSRIISEAF-PGIKCTVLDL-P-HVVANLPE----TDNLKYIAGDMFQF-----VP----PA 192 (228)
Q Consensus 132 ~~~~~vlDvGg---G~G~~~~~l~~~~-p~~~~~~~Dl-p-~~i~~a~~----~~rv~~~~gD~~~~-----~p----~~ 192 (228)
-++.+|+++|- |+-.+...+++.. ++.+++++|+ . ..-..+.+ .+||+++.||...+ .. ..
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 35889999995 4445555666776 8889999998 2 22222222 48999999998652 11 11
Q ss_pred -eEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 193 -DAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 193 -D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
-++++-..=|.+ +.+.+.|+.....++||+
T Consensus 111 ~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 111 HPVLVILDSSHTH--EHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp SSEEEEESS------SSHHHHHHHHHHT--TT-
T ss_pred CceEEEECCCccH--HHHHHHHHHhCccCCCCC
Confidence 223333344444 335788888888888884
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.2 Score=40.98 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCC-----ceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPP-----ADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~-----~D~v~~~~vl 201 (228)
..++||=||=.. ..+.+++-.++..+++++|+ +.+++-+++ .-.|+.+..|+..++|. ||+++.-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 467899898444 44555666677789999999 566654432 44599999999998873 899876432
Q ss_pred cCCChhHHHHHHHHHHHHhccCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG 224 (228)
+..+...-++.+..++||.-|
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT
T ss_pred --CCHHHHHHHHHHHHHHhCCCC
Confidence 455777888999999998665
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.26 Score=39.86 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=66.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCC------CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-P----HVVANLPETDNLKYIAGDMFQFV------PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p----~~i~~a~~~~rv~~~~gD~~~~~------p~~D~v~~~ 198 (228)
+.+..+||-+|..+|.....+..-- |+-.+.+++. | +.+..+++..||--+-.|...|. +..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 5678899999999999999998865 5778899988 5 44555666899998999998752 237887653
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
-. .+++++-++.|+..-||+||
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~gG 172 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKPGG 172 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEEEE
T ss_pred CC----ChHHHHHHHHHHHhhccCCc
Confidence 32 24677888999999999996
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.088 Score=42.66 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=65.1
Q ss_pred hccCCCeEEEecCCCcHHHHHHHHHCCC------C---eEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC-
Q 038208 130 IFEGLGSLVDVGGGNGSFSRIISEAFPG------I---KCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP- 190 (228)
Q Consensus 130 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~------~---~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p- 190 (228)
.+.+..++||+....|.|+.-+.++.-+ - +++.+||..|.. .+.|.-+.+|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 3567889999999999999888775321 1 289999966654 57888899999772 23
Q ss_pred -CceEeeehh-----hhcCCChhHHHH----HHHHHHHHhccCCC
Q 038208 191 -PADAFLFKL-----VFHGLGDEDGLK----ILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~-----vlh~~~d~~~~~----il~~~~~aL~pgG~ 225 (228)
.+|+|++-. -||++.+=...+ .|.-....|+|||+
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~ 158 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGS 158 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCe
Confidence 289998753 478776532223 34455677899975
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.28 Score=40.39 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEeCCCCCC------CCC-ce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE------------TDNLKYIAGDMFQF------VPP-AD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~------------~~rv~~~~gD~~~~------~p~-~D 193 (228)
....+|++|+|+|..++..+. ....+++.-|+|.+++..+. ...|....-+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999955555444 45778999999877765432 23566655555442 234 89
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
+++.+.+++.-..- ..++.-++.-|.-+
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~~ 192 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAKD 192 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhcC
Confidence 99999998754321 33444444444433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.19 Score=39.55 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC---CceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP---PADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p---~~D~v~~~ 198 (228)
...++||+=+|+|.++.+.+.|. ..+++.+|. ...+..+++ ..+++++..|...- .+ .||+|++=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999999986 346888887 555544432 58899999988741 11 39999987
Q ss_pred hhhcC-CChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHG-LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~-~~d~~~~~il~~~~~aL~pgG~ 225 (228)
=..+. ..+.+...++-.-...|+|+|.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~ 149 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGAL 149 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcE
Confidence 66651 2222222223234556788753
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.52 Score=41.04 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=65.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEeCCCCC---CCC--C-ceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLP----E--TDNLKYIAGDMFQ---FVP--P-ADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~----~--~~rv~~~~gD~~~---~~p--~-~D~v 195 (228)
.....+|||...+.|.=+..+++.-++ ..++.+|. +.-+...+ . ..++..+..|... ..+ + ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 356799999999999999999998776 55689998 54443332 2 4557778777643 223 2 8888
Q ss_pred ee------hhhh-------cCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 196 LF------KLVF-------HGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~------~~vl-------h~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
++ ..++ ..|..+ ...+||+.+.+.|||||.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~ 283 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV 283 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 64 1233 334433 236789999999999974
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.094 Score=44.19 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=64.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------CCceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV------PPADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~------p~~D~v~ 196 (228)
....+|||+=|=+|.++...+.. -..+++.+|. ...++.+++ .++++++..|.++.+ ..||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999987664 3457999999 677776653 478999999998732 2499997
Q ss_pred ehhh---hcCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLV---FHGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~v---lh~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
+-=. =..+. ..+-.++++++.+.|+|||.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 5211 01121 23446789999999999974
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.12 Score=39.09 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPAD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D 193 (228)
+..+.+|+|.|.|....+.++.. -...+++++ |..+.-++- ..+..|..-|+++ ++.++.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~ 140 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR 140 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccc
Confidence 45899999999999998888875 456789999 776654431 5677888888877 555543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.46 Score=40.36 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEee---------------c-------hHHH---------hcCCC--------
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLD---------------L-------PHVV---------ANLPE-------- 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D---------------l-------p~~i---------~~a~~-------- 174 (228)
..++|-=|||.|.++..|+...+.+++-=+- + |-+. ++.++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 5689999999999999999988876542110 0 1000 01111
Q ss_pred ------CCCeEEEeCCCCC--CCC----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ------TDNLKYIAGDMFQ--FVP----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ------~~rv~~~~gD~~~--~~p----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+..+...|||.+ ..+ .+|+|+..+.+- .-.....-|+.|...|||||+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcE
Confidence 2345567899987 233 289998886552 223457889999999999985
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.63 Score=37.97 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=60.7
Q ss_pred HHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCCC----CC-CceE
Q 038208 123 VKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL--PHVVANLPETDNLKYIAG-DMFQF----VP-PADA 194 (228)
Q Consensus 123 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~~~~rv~~~~g-D~~~~----~p-~~D~ 194 (228)
++ .|. ...+...+||||..||.|+.-++++. ..++.++|. .+.....+..+||..+.. |+..- +. ..|+
T Consensus 71 le-~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 71 LE-EFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HH-hcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 44 444 22467899999999999999999973 346888887 455556666788777665 55431 22 2455
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++--.+ .....+|-.+...++|++
T Consensus 148 ~v~DvSF-----ISL~~iLp~l~~l~~~~~ 172 (245)
T COG1189 148 IVIDVSF-----ISLKLILPALLLLLKDGG 172 (245)
T ss_pred EEEEeeh-----hhHHHHHHHHHHhcCCCc
Confidence 5432221 223567777777777764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.31 Score=40.12 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=52.9
Q ss_pred HHHHHHhhhhhccCCC--eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------------C--CCCeEEE
Q 038208 120 SFVVKAECKQIFEGLG--SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------------E--TDNLKYI 181 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------~--~~rv~~~ 181 (228)
+.+++ +.. +.+.. +|||.=+|.|..+..++.+ +.+++.+|. |.+....+ . ..|++++
T Consensus 76 ~~l~k-Avg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAK-AVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHH-HhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 44566 554 44444 9999999999999999998 777999998 54332211 1 1579999
Q ss_pred eCCCCCC---CC-CceEeeeh
Q 038208 182 AGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 182 ~gD~~~~---~p-~~D~v~~~ 198 (228)
.+|..+- .+ .||+|++=
T Consensus 151 ~~da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYLD 171 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEEC
Confidence 9998662 33 48999864
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.28 Score=41.56 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCeEEEecCCCcH-HHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C--CceEe
Q 038208 134 LGSLVDVGGGNGS-FSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAG----DMFQFV--P--PADAF 195 (228)
Q Consensus 134 ~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~g----D~~~~~--p--~~D~v 195 (228)
..++||||+|... |...-++.| +-++++.|+ +..++.|++ .++|+++.. +++..+ + .+|+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999875 445445554 889999999 777776653 578888644 345432 2 29999
Q ss_pred eehhhhcCCChh
Q 038208 196 LFKLVFHGLGDE 207 (228)
Q Consensus 196 ~~~~vlh~~~d~ 207 (228)
+++=-+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 998888876554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.31 Score=42.57 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=61.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEe---echHHHhcCC-------------CCCCeEEEeCCCCCC------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVL---DLPHVVANLP-------------ETDNLKYIAGDMFQF------ 188 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---Dlp~~i~~a~-------------~~~rv~~~~gD~~~~------ 188 (228)
+......+|+|+|.|......+...-..+-+++ |-|.-++... ....++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 345688999999999988877765543344444 4444333222 145689999999873
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.+++++++++++. ++++...++= ++..-+++|
T Consensus 270 ~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 270 QTEATVIFVNNVA--FDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred hhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCc
Confidence 2469999999988 5666555544 666666665
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.06 Score=40.94 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 178 LKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 178 v~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+++.-.++ .+. ..|+|+..||+-++.-++-...++.+++.|||||.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~ 81 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGK 81 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcE
Confidence 4444443333 444 49999999999999988889999999999999974
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.99 Score=34.12 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ 187 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~ 187 (228)
..-|+|+|=|+|..=..+.+.+|+-++.++|..-..--..-.+.-.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999972111111113445577788866
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.28 Score=43.47 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCC--ceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F-VPP--ADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~-~p~--~D~v~~~~v 200 (228)
+...|||||.|+|.++...+++..+ .++.++. ..|.+.|++ .++|+++.---.+ . .|. +|+++.-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3467999999999999998888744 4888887 777776664 6778877654433 2 233 777766655
Q ss_pred hcCCChhHHHHHHHHHHHHhcc
Q 038208 201 FHGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~p 222 (228)
...+--+.+..-++.+++.|..
T Consensus 145 dtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhccccchhHHHHHHHhcc
Confidence 5555555566677777777743
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.28 Score=44.09 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=60.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCC-eEEEeCCCCCC---CC-CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P----HVVANLPETDN-LKYIAGDMFQF---VP-PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p----~~i~~a~~~~r-v~~~~gD~~~~---~p-~~D~v~~~~vl 201 (228)
...+.|+|...|.|.|+.+|.+. | +.++.. | ..+..+ .+| ..-+-+|..++ +| .+|++...+++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vI--ydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVI--YDRGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhh--hhcccchhccchhhccCCCCcchhheehhhhh
Confidence 45689999999999999999764 2 444443 2 222222 122 22244566664 45 39999999999
Q ss_pred cCCChh-HHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
..+.+. +...||-++-+.|+|+|-
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGW 462 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCce
Confidence 887643 556889999999999974
|
; GO: 0008168 methyltransferase activity |
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.21 Score=30.46 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=27.5
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeec
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKT 47 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~ 47 (228)
+.|++.|...++++|+.| +|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 467888888777788888 99999999999986
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.99 Score=40.53 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=65.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCC-C
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL-----PETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGL-G 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-----~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~-~ 205 (228)
+++-+|||.-.+...+-+.. --.++-+|. +.+++.. ++.+-..+...|+.. .++ +||+++....++.+ .
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 89999999998888777652 223677788 4444432 235668889999987 566 59999999999975 3
Q ss_pred hhHH-------HHHHHHHHHHhccCCC
Q 038208 206 DEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~-------~~il~~~~~aL~pgG~ 225 (228)
|++. -..+..+.+.|+|||.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 4332 2357899999999964
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=4.5 Score=29.24 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=53.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C---CCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF-V---PPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~-~---p~~D~v~~~~vlh~~~d 206 (228)
.....+|++||-|.=......++++ +..+++.|+.+- .+ ...++++.-|+++| . .++|+|++-. |+
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 3456799999988877555444443 377899998433 22 47899999999996 2 3689888654 33
Q ss_pred hHHHHHHHHHHHHh
Q 038208 207 EDGLKILKKRREAI 220 (228)
Q Consensus 207 ~~~~~il~~~~~aL 220 (228)
.+...-+-.+.+++
T Consensus 81 pEl~~~ildva~aV 94 (129)
T COG1255 81 PELQSAILDVAKAV 94 (129)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444555544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.3 Score=37.36 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=65.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CCC-ceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF----VPP-ADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~----~p~-~D~v~~ 197 (228)
.....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++ ..++.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34567899999999999999999887 678999998 555544332 56788887887652 223 888865
Q ss_pred ------hhhhcCCCh--------------hHHHHHHHHHHHHh----ccCCC
Q 038208 198 ------KLVFHGLGD--------------EDGLKILKKRREAI----ASNGE 225 (228)
Q Consensus 198 ------~~vlh~~~d--------------~~~~~il~~~~~aL----~pgG~ 225 (228)
..++..-++ ..-.+||+++.+.+ +|||.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 112222222 12357899999999 99964
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=87.57 E-value=1 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=33.9
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
-+.|++.|...++++|+.| +|+.|+..|++++... ++.|.+++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~---~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQ---NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCC---CCceeecHH
Confidence 3567888877535788887 8999999999998742 567988874
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.43 E-value=0.17 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred ceEeeehhh---hc-CCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLV---FH-GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~v---lh-~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..| +| +|.|+...++++++++.|+|||.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~ 39 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGI 39 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCE
Confidence 788876554 33 58899999999999999999973
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=86.73 E-value=0.77 Score=39.64 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=43.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHH--------HC--------CCCeEEEeechH-----HHhcCCC-------CCC--eEE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISE--------AF--------PGIKCTVLDLPH-----VVANLPE-------TDN--LKY 180 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~--------~~--------p~~~~~~~Dlp~-----~i~~a~~-------~~r--v~~ 180 (228)
.++.-+|+|+||.+|..+..+.. ++ |.+++..-|+|. +...... ..+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 34567999999999997764432 32 346788889863 1111111 122 556
Q ss_pred EeCCCCC-CCCC--ceEeeehhhhcCCC
Q 038208 181 IAGDMFQ-FVPP--ADAFLFKLVFHGLG 205 (228)
Q Consensus 181 ~~gD~~~-~~p~--~D~v~~~~vlh~~~ 205 (228)
++|.|.. -+|. .|+++.++.||.++
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred cCchhhhccCCCCceEEEEEechhhhcc
Confidence 7889988 4673 89999999999664
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.57 E-value=2.3 Score=34.06 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCCC------CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P----HVVANLPETDNLKYIAGDMFQFVP------PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p----~~i~~a~~~~rv~~~~gD~~~~~p------~~D~v~~~~ 199 (228)
+.+..+||=+|..+|.....+..-.++-.+.+++. | +.++.+++.+|+-=+-+|...|.. ..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 67889999999999999999999888777888887 4 455566667888888889977532 3677653
Q ss_pred hhcCC-ChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGL-GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~-~d~~~~~il~~~~~aL~pgG 224 (228)
|. .++++.-+.+|+..-||+||
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhcccCC
Confidence 33 35677778889999999997
|
|
| >PF14338 Mrr_N: Mrr N-terminal domain | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.4 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.6
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhhhCC
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKEN 69 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~~ 69 (228)
-+-.|...|+++... .|.|++|+.++.+...+
T Consensus 60 a~~~L~~aGli~~~~----rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 60 ARSYLKKAGLIERPK----RGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHHHCCCccCCC----CCceEECHhHHHHHhhC
Confidence 567899999999876 68999999998555443
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.45 E-value=4.4 Score=29.76 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFV----PPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~----p~~D~v~~~~v 200 (228)
.+..++++||=|.=.-....++++ +..+++.|+ |. .+ ...+.++.-|+++|- .++|+|++.+.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 456699999977766544444443 488999998 44 22 378999999999963 36899988763
|
; PDB: 2K4M_A. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=86.21 E-value=0.55 Score=38.87 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 147 FSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 147 ~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++.++.++.|+.+++++|. +..++.+.+..-+.-...+ .+.+.++|+|++.- |.+....+++++...+++|.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence 4678889999999999999 7777776443333333333 22355689998865 55778899999999888874
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.3 Score=36.74 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=31.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-----CCCeEEEeec
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-----PGIKCTVLDL 165 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl 165 (228)
+.+...++|+|||.|.++..+++.. +...++++|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4567799999999999999999998 5678999997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.1 Score=39.33 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCC---CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+||+++.+++.+ ..| .+|.+++..+.-.+++++...+++.+.++++|||.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaR 329 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGAR 329 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCE
Confidence 6899999999876 343 49999999999888999999999999999999963
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.96 E-value=1.8 Score=35.65 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCC--------CeEEEeec
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPG--------IKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl 165 (228)
.-+|+++|+|+|.++..+++.... +++++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 479999999999999998885443 47999998
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=85.88 E-value=3 Score=32.15 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=54.9
Q ss_pred EecCCCcHHHHHHHHHCC-C--CeEEEeec-hHHHhcCCC---------CCCeEEEeC-CCCC--C-C--C--CceEeee
Q 038208 139 DVGGGNGSFSRIISEAFP-G--IKCTVLDL-PHVVANLPE---------TDNLKYIAG-DMFQ--F-V--P--PADAFLF 197 (228)
Q Consensus 139 DvGgG~G~~~~~l~~~~p-~--~~~~~~Dl-p~~i~~a~~---------~~rv~~~~g-D~~~--~-~--p--~~D~v~~ 197 (228)
=||=|.=.++.+|++.++ . +..|.+|- .++.+.-.. ...++++.+ |..+ . . . .||.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888889999999987 3 44677776 334433321 344544444 6655 1 2 2 3999998
Q ss_pred hhhhcCC-----------ChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGL-----------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~-----------~d~~~~~il~~~~~aL~pgG~ 225 (228)
++...-. +.+-...+|+.+...|+++|.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~ 120 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGE 120 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 8765541 123345567888888999864
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=1.5 Score=36.56 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=36.3
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
-+.|++.|.+...|+|+.| +|..|+..|+++++.. .+.|++.+..
T Consensus 30 al~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 88 (274)
T PRK11569 30 GLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE---LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEecCHHH
Confidence 3567888887657899998 9999999999998642 6889998754
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.2 Score=37.08 Aligned_cols=62 Identities=21% Similarity=0.454 Sum_probs=42.0
Q ss_pred CccHHHHHHHHHHhccchhHHHHHHHhhhhh-ccCCCeEEEecCCCcHHHHHHHHH----CC----CCeEEEeec-hHHH
Q 038208 100 NPGINQRFNEAMASDSEIMTSFVVKAECKQI-FEGLGSLVDVGGGNGSFSRIISEA----FP----GIKCTVLDL-PHVV 169 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~Dl-p~~i 169 (228)
.|+..+.|...++ .++++ .++.. .+.+..+|+||.|+|.++.-|++. +| .+++.+++. |...
T Consensus 51 Apels~lFGella-------~~~~~-~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 51 APELSQLFGELLA-------EQFLQ-LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred chhHHHHHHHHHH-------HHHHH-HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 5788888877653 33444 33311 234578999999999998877764 45 457888887 4443
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.4 Score=36.22 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=34.4
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
+.|+++|...+.++++.| +|..|+..|++++++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~---~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPE---DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEeehHHH
Confidence 567888887434456777 9999999999999973 5689999743
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.04 E-value=3.8 Score=34.88 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeechHHHhcCC----C------------------------CCCeEE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDLPHVVANLP----E------------------------TDNLKY 180 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dlp~~i~~a~----~------------------------~~rv~~ 180 (228)
..+...||-+|||.-.+...+...+ +.++++-+|.|++++.-- + ..|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4677899999999999999999988 788999999988775311 0 355666
Q ss_pred EeCCCCC--CC----------CC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 181 IAGDMFQ--FV----------PP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 181 ~~gD~~~--~~----------p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
...|... ++ ++ +-+++.--+|.+.+++++..+++.+.+..+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a 220 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENA 220 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcc
Confidence 6667653 11 11 45667777899999999999999998866543
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=83.90 E-value=1.5 Score=36.01 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=35.9
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
-+.|++.|.....|+|+.| +|..|+..|+++++ ++.|++++...
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~ 68 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence 3567888877557899998 99999999999986 58899998543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=1.8 Score=36.10 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=36.1
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
-+.|++.|...+.++|+.| +|..|+..|+|++++. .+.|+++...
T Consensus 27 ~l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 85 (271)
T PRK10163 27 GIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ---LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEEecHHH
Confidence 4567888887656789888 9999999999988743 6789998743
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=82.71 E-value=8.8 Score=33.48 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=56.2
Q ss_pred ccCCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCC-CCCC---C-C--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYI---AGD-MFQF---V-P--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~---~gD-~~~~---~-p--~~D~v~~~ 198 (228)
+....+|+.+|+|. |..+..++++....++++.|. ++..+.+++...+.++ ..+ +.+. . + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999988 889999999986546888887 6666655432122222 221 2111 1 1 36776542
Q ss_pred ---------------hhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 199 ---------------LVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ---------------~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++|+-.++. ...++.+.+.|+|+|
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G 300 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGG 300 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCC
Confidence 122222333 457888899999986
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=2.3 Score=35.19 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 14 IELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
--+.|++.|...++++|+.| +|+.|+..|++++... ++.|++++....|
T Consensus 12 ral~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~---~~~Y~Lg~~~~~l 74 (263)
T PRK09834 12 RGLMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSAS---DDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC---CCcEEEcHHHHHH
Confidence 34567888876555689888 9999999999998743 5789999755433
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=8 Score=36.75 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=74.2
Q ss_pred CChhhhcccCccHHHHHHHHHHhcc-chhH-----------HHH------HHHhhhhhc--cCCCeEEEecCCCcHHHHH
Q 038208 91 IKFWEFLNQNPGINQRFNEAMASDS-EIMT-----------SFV------VKAECKQIF--EGLGSLVDVGGGNGSFSRI 150 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~f~~~m~~~~-~~~~-----------~~~------~~~~~~~~~--~~~~~vlDvGgG~G~~~~~ 150 (228)
...||.+++++-..+.|.+++...- .+.. ..+ +. ..+..- .....|+-||+|.|-+...
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~md-rvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQ-RVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc-ccccccCCCceEEEEEEcCCccHHHHH
Confidence 3457888899988888988876432 1100 000 00 001000 1124689999999998887
Q ss_pred HHHHCC----CCeEEEeec-hHHH----hcC-C--C--------CCCeEEEeCCCCC-CCC-------------CceEee
Q 038208 151 ISEAFP----GIKCTVLDL-PHVV----ANL-P--E--------TDNLKYIAGDMFQ-FVP-------------PADAFL 196 (228)
Q Consensus 151 l~~~~p----~~~~~~~Dl-p~~i----~~a-~--~--------~~rv~~~~gD~~~-~~p-------------~~D~v~ 196 (228)
.++..- .+++.+++- |..+ .+- . . .++|+++..|+.+ ..+ .+|+++
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV 797 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence 776543 356777775 4421 111 1 1 3579999999987 222 278775
Q ss_pred ehhhhcCCCh-hHHHHHHHHHHHHhcc
Q 038208 197 FKLVFHGLGD-EDGLKILKKRREAIAS 222 (228)
Q Consensus 197 ~~~vlh~~~d-~~~~~il~~~~~aL~p 222 (228)
. -.|-.|.| |-...-|..+.+-||+
T Consensus 798 S-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 798 S-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred H-hhhcccccccCCHHHHHHHHHhhhh
Confidence 4 34444543 3334456666666665
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.20 E-value=5.3 Score=33.82 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=47.1
Q ss_pred CCeEEEecCCC-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 134 LGSLVDVGGGN-G-SFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 134 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...++|+|++.-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788888775 2 34444444433347899998 55555544321111111222112345888876653 33345
Q ss_pred HHHHHHHHHhccCC
Q 038208 211 KILKKRREAIASNG 224 (228)
Q Consensus 211 ~il~~~~~aL~pgG 224 (228)
.+++.+...++||.
T Consensus 81 ~v~~~l~~~l~~~~ 94 (307)
T PRK07502 81 AVAAEIAPHLKPGA 94 (307)
T ss_pred HHHHHHHhhCCCCC
Confidence 66777777777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 228 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 6e-52 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-50 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 7e-47 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 4e-44 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 5e-44 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 6e-44 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-24 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-22 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 4e-22 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 2e-21 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-18 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 4e-15 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 9e-10 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 3e-09 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-06 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 7e-06 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 2e-05 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 2e-04 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 249 bits (638), Expect = 1e-82
Identities = 105/264 (39%), Positives = 152/264 (57%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++ + SMSLK A+E++I +II HG+ I+LS L MR L H+G
Sbjct: 24 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTELTL 84
F + +EE+Y LT +S LL++ + L W +LTL
Sbjct: 84 F--EIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+AMASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL--RDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-76
Identities = 116/273 (42%), Positives = 149/273 (54%), Gaps = 47/273 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD IH HG+ +TLSEL +RLL H+G
Sbjct: 18 VYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGF 77
Query: 44 FNKTKVNGQ------EEAYGLTASSTLLIKENPFSLSSWF-------------------- 77
F KT V G+ E AY LT S LLI P LSS
Sbjct: 78 FAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN 137
Query: 78 KGTELTLWGTVHGIKFWEFLNQNPGINQ--RFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
+ E TL+ G FW+FLN++ + F +AMASDS + + E K++FEGL
Sbjct: 138 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVL--QENKRVFEGLE 195
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
SLVDVGGG G +++I E FP +KCTV D P VV NL +NL ++ GDMF+ +P ADA
Sbjct: 196 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 255
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
L K V H DE LKILK +EAI+ G+ GK
Sbjct: 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGK 288
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-76
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 47/261 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ + +L+ A + +AD + T +EL +RLL +
Sbjct: 30 AMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSWFK------------------GTELTLWGTV 88
+ + + LT L ++P + G E + +
Sbjct: 88 S-----DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADI 142
Query: 89 HGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFS 148
G + + + + + E M + S + +A F G++ DVGGG G F
Sbjct: 143 FGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARA---GDFPATGTVADVGGGRGGFL 199
Query: 149 RIISEAFPGIKCTVLDLPHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHG 203
+ PG++ +LD VVA K + GD + VP AD + K + H
Sbjct: 200 LTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHN 259
Query: 204 LGDEDGLKILKKRREAIASNG 224
GDED ++IL R + ++G
Sbjct: 260 WGDEDSVRILTNCRRVMPAHG 280
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 5e-75
Identities = 69/271 (25%), Positives = 111/271 (40%), Gaps = 49/271 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGR---AITLSEL--------------------MRL 37
N + L AI+L++ +II ++ SE+ +RL
Sbjct: 32 TTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRL 91
Query: 38 LVHSGCFNKTKVN----GQEEAYGLTASSTLLIKENP--------------------FSL 73
L T G E YGL+ L+ + +
Sbjct: 92 LASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNF 151
Query: 74 SSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEG 133
++ L+ VHG+ +EF+ ++ +NQ FN++M ++ E FEG
Sbjct: 152 KEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML--EIYTGFEG 209
Query: 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPAD 193
+ +LVDVGGG+G +I +P IK DLP V+ N P ++++ GDMF VP D
Sbjct: 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGD 269
Query: 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
A + K V H DE ++ L +A++ NG
Sbjct: 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNG 300
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 1e-73
Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 48/269 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGR---AITLSEL------------------MRLLV 39
+ M+LK AIEL + +I+ I+ +E+ +RLL
Sbjct: 29 ASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLA 88
Query: 40 HSGCFNKTKV----NGQEEAYGLTASSTLLIKENP--------------------FSLSS 75
T E YGL L K F L
Sbjct: 89 SYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKD 148
Query: 76 WFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
+ +G+ +++ + IN+ FN+ M+S+S I ++ E FEGL
Sbjct: 149 AIL-EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL--EMYNGFEGLT 205
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
++VDVGGG G+ + +I +P I DLPHV+ + P ++++ GDMF VP DA
Sbjct: 206 TIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAI 265
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNG 224
K + H DE LK+LK A+ +G
Sbjct: 266 FIKWICHDWSDEHCLKLLKNCYAALPDHG 294
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 1e-73
Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 50/265 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ + + M+++ A L +AD I T +E+ +R LV G F +
Sbjct: 13 LADLATPMAVRVAATLRVADHIA--AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTR 70
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSWFK-------------------GTELTLWGT 87
+ YGLT L ++ W T +
Sbjct: 71 D----GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPV 126
Query: 88 VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSF 147
+G FWE L +P ++ F+ M+ E+ + + + LG +VDVGGG+G
Sbjct: 127 RYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAK-YD--WAALGHVVDVGGGSGGL 183
Query: 148 SRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199
+ A + TVLDL + + + + G F +P A ++
Sbjct: 184 LSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA 243
Query: 200 VFHGLGDEDGLKILKKRREAIASNG 224
V H D + IL++ EA S G
Sbjct: 244 VLHDWDDLSAVAILRRCAEAAGSGG 268
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 3e-73
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 50/265 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ + ++ A+EL + +++ T + L +RLL G F+
Sbjct: 46 LQGAWKARAIHVAVELGVPELLQ--EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDD 103
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFS-------------------LSSWFKGTELTLWGT 87
G ++ + A S +L+ + L+ + T +
Sbjct: 104 L---GHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVR-TGEASFDV 159
Query: 88 VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSF 147
+G FW+ +++P + FN AM S S V A F G + VD+GGG GS
Sbjct: 160 ANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY---DFSGAATAVDIGGGRGSL 216
Query: 148 SRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199
+ +AFPG++ T+L+ P V E D + + GD F+ +P AD +L K
Sbjct: 217 MAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH 276
Query: 200 VFHGLGDEDGLKILKKRREAIASNG 224
V H D+D ++IL++ A+ +
Sbjct: 277 VLHDWDDDDVVRILRRIATAMKPDS 301
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 3e-73
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 47/268 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIH-CHGRAITLSEL-------------------MRLLVH 40
+ + M+LK AIEL + +I+ G+++T +E+ +RLL
Sbjct: 28 ASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLAS 87
Query: 41 SGCFNKTKVNGQ----EEAYGLTASSTLLIKENP--------------------FSLSSW 76
G+ +YG L + L
Sbjct: 88 YNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDA 147
Query: 77 FKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGS 136
+ +G+ +E+ +P N+ FNE M + S I+T ++ E FEGLG+
Sbjct: 148 VL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL--ELYHGFEGLGT 204
Query: 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFL 196
LVDVGGG G+ I+ +P IK DLPHV++ P+ + ++ GDMF+ VP D L
Sbjct: 205 LVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTIL 264
Query: 197 FKLVFHGLGDEDGLKILKKRREAIASNG 224
K + H D+ +LK +A+ ++G
Sbjct: 265 MKWILHDWSDQHCATLLKNCYDALPAHG 292
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 3e-73
Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 50/265 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ + + M ++ A L + D I A T+ L +R LV G +
Sbjct: 27 LGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEE 84
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSWFK-------------------GTELTLWGT 87
+ T LL ++P + +W T + +
Sbjct: 85 D----APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYES 140
Query: 88 VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSF 147
++G F+E L P + F+ +A D ++ A + + ++DVGGG G F
Sbjct: 141 IYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAA-YD--WTNVRHVLDVGGGKGGF 197
Query: 148 SRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199
+ I+ P + TVL++ V +D + + GD F+ +P ADA +
Sbjct: 198 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 257
Query: 200 VFHGLGDEDGLKILKKRREAIASNG 224
V D D ++IL + EA+ G
Sbjct: 258 VLLNWPDHDAVRILTRCAEALEPGG 282
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 3e-73
Identities = 57/265 (21%), Positives = 92/265 (34%), Gaps = 48/265 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ N ++ M+L+ A L + D + A TL+ L +R L G
Sbjct: 24 LGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHPQALSRLVRHLTVVGVL-- 79
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSWFK-------------------GTELTLWGT 87
Q T LL +P +W T +
Sbjct: 80 EGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAG 139
Query: 88 VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSF 147
+G FWE L+ + + F+ M+ D ++ A + + ++DVGGGNG
Sbjct: 140 RYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA-YD--WSAVRHVLDVGGGNGGM 196
Query: 148 SRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199
I+ P ++ T+++L D + GD F+ +P AD L
Sbjct: 197 LAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256
Query: 200 VFHGLGDEDGLKILKKRREAIASNG 224
V DED L IL+ A+ G
Sbjct: 257 VLLNWSDEDALTILRGCVRALEPGG 281
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 6e-68
Identities = 62/263 (23%), Positives = 96/263 (36%), Gaps = 51/263 (19%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ S + A L +AD+I + L MRLLV F
Sbjct: 16 VTGEWKSRCVYVATRLGLADLIE--SGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQG 73
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSW--FKGTEL-TLWG--------------TVH 89
+ Y T +S LL ++ S F G E W
Sbjct: 74 D----TRDGYANTPTSHLL-RDVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAF 128
Query: 90 GIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSR 149
G F+ +L + P +RF AM + + + F G S VDVGGG+G ++
Sbjct: 129 GEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD----FRG-RSFVDVGGGSGELTK 183
Query: 150 IISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKLVF 201
I +A P + +LD + + + + + GDM Q VP D +L +
Sbjct: 184 AILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRII 243
Query: 202 HGLGDEDGLKILKKRREAIASNG 224
L + L++L REA+A +G
Sbjct: 244 GDLDEAASLRLLGNCREAMAGDG 266
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 5e-65
Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 47/261 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNK 46
+ +K AIEL + + L+ L+ L N
Sbjct: 39 FKGLIEFSCMKAAIELDLFSHMA--EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINL 96
Query: 47 TKVNGQEEAYGLTASSTLLIKENPFSLSSW-------FKGTELTLWG----TVHGIK--- 92
++ + LT + + P + + V G K
Sbjct: 97 -----EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFK 151
Query: 93 -FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRII 151
+ N F E S+++ +++ K +G+ ++DVGGG G S +
Sbjct: 152 GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEE-AK--LDGVKKMIDVGGGIGDISAAM 208
Query: 152 SEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLVFHG 203
+ FP + T+L+LP + + E D ++ IA D+++ P ADA LF + +
Sbjct: 209 LKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYS 268
Query: 204 LGDEDGLKILKKRREAIASNG 224
++ + KK +A+ S G
Sbjct: 269 ANEQLSTIMCKKAFDAMRSGG 289
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 3e-55
Identities = 36/261 (13%), Positives = 78/261 (29%), Gaps = 48/261 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNK 46
+ S L A+ + D+ T +E L+ L G K
Sbjct: 32 SDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLLTK 88
Query: 47 TKVNGQEEAYGLTA-SSTLLIKENPFSLSSW--FKGTELTLW---------GTVHGIKFW 94
+ +A+ TA + L + + + + W +
Sbjct: 89 -----EGDAFRNTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQE 143
Query: 95 EFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA 154
+ FN+AM S+ M V + +F +++D+ GG+G++ +
Sbjct: 144 SRFAHDTRARDAFNDAMVRLSQPMVDVVSEL---GVFARARTVIDLAGGHGTYLAQVLRR 200
Query: 155 FPGIKCTVLDLPHVVANLPET-------DNLKYIAGDMFQFVPP----ADAFLFKLVFHG 203
P + + DLP +T +++ ++ AD + H
Sbjct: 201 HPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHY 260
Query: 204 LGDEDGLKILKKRREAIASNG 224
+ +++ + G
Sbjct: 261 FDAREAREVIGHAAGLVKPGG 281
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-52
Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 44/260 (16%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNK 46
+ + S ++K A+EL++ I + L LV G K
Sbjct: 14 VNAYQRSAAIKAAVELNVFTAIS--QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK 71
Query: 47 TKVNGQEEAYGLTA-SSTLLIKENPFSLSSWFKG-TELTLWGTVHGIK-----------F 93
Q E Y LT+ S+ L +++ F + + + + +
Sbjct: 72 -----QAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISS 126
Query: 94 WEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISE 153
L+ + +F +AM+ + + + ++D+ +G F +++
Sbjct: 127 EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQL-VNENKIEPLKVLDISASHGLFGIAVAQ 185
Query: 154 AFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP--ADAFLFKLVFHGL 204
P + +D V+ E IAG F+ D L H
Sbjct: 186 HNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHF 245
Query: 205 GDEDGLKILKKRREAIASNG 224
++L+K + A+A G
Sbjct: 246 DVATCEQLLRKIKTALAVEG 265
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-49
Identities = 36/266 (13%), Positives = 77/266 (28%), Gaps = 49/266 (18%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNK 46
F + + ++ I ++ TL E L+ + G
Sbjct: 23 AFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL 82
Query: 47 TKVNGQEEAYGLTASSTLLIKENP----------------FSLSSWFK-GTELTLWGTVH 89
+E+ Y L + L+ + F L G L
Sbjct: 83 -----EEDRYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGE 137
Query: 90 GIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSR 149
+E L+Q P Q+ + L+D+GG G ++
Sbjct: 138 WPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGGNTGKWAT 195
Query: 150 IISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP----ADAFLFK 198
+ ++ T++DLP + + + ++ + ++ P DA
Sbjct: 196 QCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255
Query: 199 LVFHGLGDEDGLKILKKRREAIASNG 224
+E+ + IL + ++I +
Sbjct: 256 QFLDCFSEEEVISILTRVAQSIGKDS 281
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-05
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVV----ANLPETDNLKYIAGDMFQFV 189
+D G G G ++ + +L+ H++ L K+I M
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT 153
Query: 190 PPA---DAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
P D + + L D D +K K ++A+ NG
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG 191
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHV---VA--NLPETDNLKYIAGDM--FQ 187
++D+G G G S + E +P T++D+ +A +KYI D +
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105
Query: 188 FVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
F D + L H L DED ++ K+ + +G
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESG 142
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.75 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.59 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.58 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.57 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.57 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.56 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.53 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.53 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.52 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.51 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.51 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.51 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.51 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.51 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.5 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.5 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.49 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.49 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.49 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.49 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.49 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.48 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.48 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.47 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.46 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.46 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.46 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.45 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.45 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.45 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.45 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.45 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.45 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.44 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.44 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.44 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.44 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.44 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.44 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.43 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.42 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.42 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.38 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.36 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.36 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.36 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.35 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.34 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.33 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.33 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.33 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.33 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.33 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.32 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.32 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.32 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.32 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.32 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.31 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.31 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.3 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.3 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.3 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.3 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.3 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.3 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.3 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.29 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.29 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.29 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.28 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.27 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.27 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.27 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.26 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.25 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.25 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.25 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.24 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.24 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.22 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.22 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.21 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.21 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.2 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.2 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.2 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.2 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.2 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.2 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.19 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.19 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.19 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.19 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.18 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.18 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.18 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.17 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.16 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.16 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.16 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.16 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.15 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.15 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.14 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.13 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.13 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.13 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.12 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.11 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.11 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.11 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.11 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.1 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.1 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.1 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.1 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.09 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.09 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.09 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.08 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.08 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.07 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.06 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.06 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.06 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.05 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.05 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.05 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.05 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.05 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.04 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.04 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.03 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.03 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.02 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.02 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.02 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.01 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.01 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.01 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.01 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.01 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.0 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.0 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.0 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.99 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.98 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.97 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.97 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.94 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.92 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.91 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.89 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.87 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.86 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.85 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.85 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.85 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.83 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.83 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.8 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.76 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.75 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.73 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.69 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.69 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.65 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.64 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.64 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.58 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.57 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.57 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.57 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.56 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.56 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.56 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.56 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.55 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.55 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.52 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.51 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.5 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.48 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.48 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.47 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.46 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.46 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.45 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.38 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.29 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.29 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.28 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.16 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.14 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.1 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.08 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.04 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.02 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.01 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.97 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.91 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.9 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.88 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.87 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.75 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.73 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.68 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.65 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.64 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.63 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.53 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.49 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.26 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.24 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.23 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.12 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.01 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.8 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.73 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.58 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.54 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.52 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.03 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.9 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 95.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 94.82 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.65 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 93.09 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.94 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 90.32 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 89.59 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 89.52 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 89.5 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.1 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.02 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 87.65 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 86.81 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 86.63 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 86.52 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 85.36 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 85.01 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 84.24 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 83.81 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 81.12 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 81.04 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 80.95 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=302.86 Aligned_cols=219 Identities=21% Similarity=0.347 Sum_probs=190.8
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhch-hhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST-LLI 66 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~-~l~ 66 (228)
+||+.+++|++|+||||||+|.+.++|+|++| +||+|+++|+|++... ++.+.|++|+.++ +|.
T Consensus 17 ~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~-~~~~~y~~t~~s~~~l~ 95 (353)
T 4a6d_A 17 NGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR-GGKAFYRNTELSSDYLT 95 (353)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc-CccceeeCCHHHHHHhh
Confidence 69999999999999999999998667999888 9999999999986531 1245799999987 666
Q ss_pred hCCCCC------------------hHHhhccCCCCccccccC---CChhhhcccCccHHHHHHHHHHhccchhHHHHHHH
Q 038208 67 KENPFS------------------LSSWFKGTELTLWGTVHG---IKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKA 125 (228)
Q Consensus 67 ~~~~~~------------------l~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~ 125 (228)
++++.+ |.+.++++. +++...+| .++|+++.++|+....|+++|........+.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~- 173 (353)
T 4a6d_A 96 TVSPTSQCSMLKYMGRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLT- 173 (353)
T ss_dssp TTSTTCCHHHHHHHHHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHH-
T ss_pred cCCchHHHHHHHHhCHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 776654 455556665 56777776 4689999999999999999999988888888888
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE------TDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~------~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+||++ +.|++|+|+++
T Consensus 174 ~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~ 251 (353)
T 4a6d_A 174 AFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILA 251 (353)
T ss_dssp SSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEE
T ss_pred hcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEee
Confidence 888 88889999999999999999999999999999999999987653 6899999999998 56789999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++||+|+|+++.+||++++++|+|||.
T Consensus 252 ~vlh~~~d~~~~~iL~~~~~al~pgg~ 278 (353)
T 4a6d_A 252 RVLHDWADGKCSHLLERIYHTCKPGGG 278 (353)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHCCTTCE
T ss_pred eecccCCHHHHHHHHHHHHhhCCCCCE
Confidence 999999999999999999999999963
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=281.21 Aligned_cols=222 Identities=31% Similarity=0.528 Sum_probs=192.3
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCC-CCcCHHH-------------------HHHHHHhCCceeecccCC--C--CCeE
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHG-RAITLSE-------------------LMRLLVHSGCFNKTKVNG--Q--EEAY 56 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~-~p~t~~e-------------------ll~~L~~~g~l~~~~~~~--~--~~~~ 56 (228)
++||+.+++|++|+++||||+|+..+ +|+|++| +||+|++.|+|+++..++ + ++.|
T Consensus 28 ~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y 107 (364)
T 3p9c_A 28 ASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSY 107 (364)
T ss_dssp TTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEE
T ss_pred HHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEE
Confidence 47999999999999999999999853 5887665 799999999999862100 0 2689
Q ss_pred eCChhchhhhhCC-CCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccc
Q 038208 57 GLTASSTLLIKEN-PFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSE 116 (228)
Q Consensus 57 ~~t~~~~~l~~~~-~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 116 (228)
++|+.++.|+.++ +.+ |.++++++. ++|+..+|.++|+|+.++|+..+.|+++|...+.
T Consensus 108 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 186 (364)
T 3p9c_A 108 GAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSI 186 (364)
T ss_dssp EECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhH
Confidence 9999999887654 433 444555664 7898889999999999999999999999999887
Q ss_pred hhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEee
Q 038208 117 IMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFL 196 (228)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~ 196 (228)
.....+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|..|+|+
T Consensus 187 ~~~~~~~~-~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~ 264 (364)
T 3p9c_A 187 IITKKLLE-LYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTIL 264 (364)
T ss_dssp HHHHHHHH-HCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEE
T ss_pred HHHHHHHH-hcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEE
Confidence 77777787 775 2667899999999999999999999999999999999999999988999999999999888679999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++||+|+|+++.++|++++++|+|||.
T Consensus 265 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 293 (364)
T 3p9c_A 265 MKWILHDWSDQHCATLLKNCYDALPAHGK 293 (364)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred ehHHhccCCHHHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999999999999963
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=276.65 Aligned_cols=214 Identities=24% Similarity=0.428 Sum_probs=190.7
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
++||+.+++|++|+++||||+|++ +|+|++| +||+|++.|+|++ . ++.|++|+.++.|+
T Consensus 30 ~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~----~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 30 AMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-S----DGRFALTDKGAALR 102 (348)
T ss_dssp HTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-E----TTEEEECTTTGGGS
T ss_pred HHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-c----CCEEecCHHHHHHh
Confidence 368999999999999999999986 6999998 9999999999999 4 68999999999888
Q ss_pred hCCCCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhh
Q 038208 67 KENPFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAEC 127 (228)
Q Consensus 67 ~~~~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 127 (228)
++++.+ |+++++++. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.+++ .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~ 180 (348)
T 3lst_A 103 SDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILAR-AG 180 (348)
T ss_dssp TTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHH-HS
T ss_pred cCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHH-hC
Confidence 776543 445556664 678888899999999999999999999999988877788888 88
Q ss_pred hhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 128 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
+ +++..+|||||||+|.++..+++++|+++++++|+|.++...+. .+||+++.+|+++++|.||+|+++++||
T Consensus 181 ~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh 258 (348)
T 3lst_A 181 D--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILH 258 (348)
T ss_dssp C--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred C--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhcc
Confidence 7 78889999999999999999999999999999999888874321 5789999999998778999999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|+++.++|++++++|||||.
T Consensus 259 ~~~d~~~~~~L~~~~~~LkpgG~ 281 (348)
T 3lst_A 259 NWGDEDSVRILTNCRRVMPAHGR 281 (348)
T ss_dssp GSCHHHHHHHHHHHHHTCCTTCE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999963
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=277.33 Aligned_cols=221 Identities=31% Similarity=0.520 Sum_probs=190.7
Q ss_pred chhhHHHHHHHHHHcChhhHhhhC---CCCcCHHH------------------HHHHHHhCCceeecccC--CC--CCeE
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCH---GRAITLSE------------------LMRLLVHSGCFNKTKVN--GQ--EEAY 56 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~---~~p~t~~e------------------ll~~L~~~g~l~~~~~~--~~--~~~~ 56 (228)
+||+.+++|++|+++||||+|++. ++|+|++| +||+|++.|+|++...+ .+ +++|
T Consensus 30 ~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y 109 (368)
T 3reo_A 30 SAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLY 109 (368)
T ss_dssp TTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCccccee
Confidence 689999999999999999999883 24788777 89999999999986200 00 2689
Q ss_pred eCChhchhhhhCC-CCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccc
Q 038208 57 GLTASSTLLIKEN-PFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSE 116 (228)
Q Consensus 57 ~~t~~~~~l~~~~-~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 116 (228)
++|+.++.|+.+. +.+ |.++++++. ++|+..+|.++|+|+.++|+..+.|+++|...+.
T Consensus 110 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 188 (368)
T 3reo_A 110 GLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNST 188 (368)
T ss_dssp EECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhh
Confidence 9999999877653 443 444455554 7888889999999999999999999999999887
Q ss_pred hhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEee
Q 038208 117 IMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFL 196 (228)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~ 196 (228)
.....+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|..|+|+
T Consensus 189 ~~~~~~~~-~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~ 266 (368)
T 3reo_A 189 ITMKKILE-MYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIF 266 (368)
T ss_dssp HHHHHHHT-TCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEE
T ss_pred hHHHHHHH-hcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEE
Confidence 77777777 665 2567899999999999999999999999999999999999999888899999999998888679999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++||+|+++++.++|++++++|+|||.
T Consensus 267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~ 295 (368)
T 3reo_A 267 IKWICHDWSDEHCLKLLKNCYAALPDHGK 295 (368)
T ss_dssp EESCGGGBCHHHHHHHHHHHHHHSCTTCE
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999999999999973
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=274.31 Aligned_cols=215 Identities=27% Similarity=0.442 Sum_probs=188.7
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
++||+.+++|++|+++||||+|++ +|+|++| +||+|++.|+++++. ++.|.+|+.++.|.
T Consensus 13 ~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~----~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 13 LADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG----QGVYGLTEFGEQLR 86 (332)
T ss_dssp HTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT----TSBEEECTTGGGGS
T ss_pred HHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC----CCeEEcCHhHHHHh
Confidence 379999999999999999999986 6999998 999999999999976 68999999999887
Q ss_pred hCCCCC--------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHh
Q 038208 67 KENPFS--------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAE 126 (228)
Q Consensus 67 ~~~~~~--------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 126 (228)
++++.+ |+++++++. ++|+..+|.++|+|+.++|+..+.|.+.|...+....+.+++ .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~ 164 (332)
T 3i53_A 87 DDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAA-K 164 (332)
T ss_dssp TTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGG-S
T ss_pred cCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHH-h
Confidence 776643 223334443 677778888999999999999999999999887766666667 6
Q ss_pred hhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeeh
Q 038208 127 CKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFK 198 (228)
Q Consensus 127 ~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~ 198 (228)
++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+||+++.+|+++++| +||+|+++
T Consensus 165 ~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~ 242 (332)
T 3i53_A 165 YD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLS 242 (332)
T ss_dssp SC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEE
T ss_pred CC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEe
Confidence 66 67789999999999999999999999999999999999988763 4789999999998888 69999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++||+|+|+++.++|++++++|+|||.
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~ 269 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGV 269 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCE
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999999999963
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=274.26 Aligned_cols=214 Identities=28% Similarity=0.533 Sum_probs=191.2
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCe-EeCChhchhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEA-YGLTASSTLLI 66 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~-~~~t~~~~~l~ 66 (228)
+||+.+++|++|+++||||+|++ +|+|++| +||+|++.|+|++.+ ++. |++|+.++.|.
T Consensus 47 ~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~----~~~~y~~t~~s~~L~ 120 (369)
T 3gwz_A 47 QGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG----HDDLFAQNALSAVLL 120 (369)
T ss_dssp HHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS----STTEEECCHHHHTTS
T ss_pred HHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC----CCceEecCHHHHHHh
Confidence 68999999999999999999996 7999998 999999999999976 678 99999999888
Q ss_pred hCCCCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhh
Q 038208 67 KENPFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAEC 127 (228)
Q Consensus 67 ~~~~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 127 (228)
++++.+ |.++++++. ++|...+|.++|+|+.++|+..+.|+++|........+.+++ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~-~~ 198 (369)
T 3gwz_A 121 PDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAA-AY 198 (369)
T ss_dssp CCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred cCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHH-hC
Confidence 776643 334445554 678888898999999999999999999999988877788888 77
Q ss_pred hhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeehh
Q 038208 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKL 199 (228)
Q Consensus 128 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~~ 199 (228)
+ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++| +||+|++++
T Consensus 199 ~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~ 276 (369)
T 3gwz_A 199 D--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH 276 (369)
T ss_dssp C--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEES
T ss_pred C--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhh
Confidence 7 77889999999999999999999999999999999999987764 4789999999998888 699999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||+|+|+++.++|++++++|+|||.
T Consensus 277 vlh~~~d~~~~~~L~~~~~~L~pgG~ 302 (369)
T 3gwz_A 277 VLHDWDDDDVVRILRRIATAMKPDSR 302 (369)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred hhccCCHHHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999999999963
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=268.22 Aligned_cols=219 Identities=47% Similarity=0.867 Sum_probs=191.6
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH-----------------HHHHHHhCCceeecccCCCCCeEeCChhchh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE-----------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTL 64 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e-----------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~ 64 (228)
+||+.+++|++|+++||||+|+..++|+|++| +||+|++.|+|++.. .+++.|++|+.++.
T Consensus 25 ~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~--~~~~~y~~t~~s~~ 102 (352)
T 1fp2_A 25 YAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT--KEEESYALTVASEL 102 (352)
T ss_dssp TTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE--SSSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec--CCCCeEeCCHHHHH
Confidence 58999999999999999999997535888887 899999999999871 00589999999998
Q ss_pred hhhCCCCC-------------------hHHhhc-cCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHH
Q 038208 65 LIKENPFS-------------------LSSWFK-GTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVK 124 (228)
Q Consensus 65 l~~~~~~~-------------------l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 124 (228)
|+++++.+ |+++++ ++ .++|+..+|.++|+|+.++|+..+.|.+.|........+. ++
T Consensus 103 L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~ 180 (352)
T 1fp2_A 103 LVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEED-LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LR 180 (352)
T ss_dssp TSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSS-CCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HH
T ss_pred HhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcC-CChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HH
Confidence 88776533 556666 44 4788888899999999999999999999999888776666 77
Q ss_pred HhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 125 AECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 125 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.||+|+++++||+|
T Consensus 181 -~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 181 -DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259 (352)
T ss_dssp -TCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred -hcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccC
Confidence 7732377889999999999999999999999999999999999999987677999999998888889999999999999
Q ss_pred ChhHHHHHHHHHHHHhcc---CCC
Q 038208 205 GDEDGLKILKKRREAIAS---NGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~p---gG~ 225 (228)
+|+++.++|++++++|+| ||.
T Consensus 260 ~d~~~~~~l~~~~~~L~p~~~gG~ 283 (352)
T 1fp2_A 260 TDKDCLRILKKCKEAVTNDGKRGK 283 (352)
T ss_dssp CHHHHHHHHHHHHHHHSGGGCCCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcE
Confidence 999999999999999999 863
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=267.40 Aligned_cols=221 Identities=50% Similarity=0.860 Sum_probs=191.0
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH-----------------HHHHHHhCCceeec-----c-cCCCCCeEeC
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE-----------------LMRLLVHSGCFNKT-----K-VNGQEEAYGL 58 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e-----------------ll~~L~~~g~l~~~-----~-~~~~~~~~~~ 58 (228)
+||+.+++|++|+++||||+|+..++|+|++| +||+|++.|+|++. + .+..++.|++
T Consensus 19 ~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~ 98 (358)
T 1zg3_A 19 YNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSL 98 (358)
T ss_dssp TTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeC
Confidence 58999999999999999999997535888877 89999999999987 1 0000278999
Q ss_pred ChhchhhhhCCCCC-------------------hHHhhccCC-CCccccccCCChhhhcccCccHHH--HHHHHHHhccc
Q 038208 59 TASSTLLIKENPFS-------------------LSSWFKGTE-LTLWGTVHGIKFWEFLNQNPGINQ--RFNEAMASDSE 116 (228)
Q Consensus 59 t~~~~~l~~~~~~~-------------------l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~--~f~~~m~~~~~ 116 (228)
|+.++.|+++++.+ |+++++++. .++|+.++|.++|+|+.++|+..+ .|++.|...+.
T Consensus 99 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~ 178 (358)
T 1zg3_A 99 TPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSR 178 (358)
T ss_dssp CHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccH
Confidence 99999888776533 556666663 367888889999999999999999 99999998777
Q ss_pred hhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEee
Q 038208 117 IMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFL 196 (228)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~ 196 (228)
... .+++ .+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|+
T Consensus 179 ~~~-~~~~-~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~ 256 (358)
T 1zg3_A 179 MFK-LVLQ-ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVL 256 (358)
T ss_dssp THH-HHHH-HTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEE
T ss_pred HHH-HHHH-hcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEE
Confidence 655 6777 77323677899999999999999999999999999999999999998876779999999998888899999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhcc---CC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIAS---NG 224 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~p---gG 224 (228)
++++||+|+|+++.++|++++++|+| ||
T Consensus 257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG 287 (358)
T 1zg3_A 257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDG 287 (358)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHTGGGGGGC
T ss_pred EcccccCCCHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999 86
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=261.33 Aligned_cols=222 Identities=31% Similarity=0.521 Sum_probs=178.1
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCC---cCHHH--------------------HHHHHHhCCceeec----ccCCCCC
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRA---ITLSE--------------------LMRLLVHSGCFNKT----KVNGQEE 54 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p---~t~~e--------------------ll~~L~~~g~l~~~----~~~~~~~ 54 (228)
+||+.+++|++|+++||||+|+..++| +|++| +||+|++.|+|++. +.+..++
T Consensus 33 ~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~ 112 (372)
T 1fp1_D 33 TNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAER 112 (372)
T ss_dssp HTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCC
Confidence 589999999999999999999974225 76544 79999999999987 2000025
Q ss_pred eEeCChhchhhhhCCC-CC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhc
Q 038208 55 AYGLTASSTLLIKENP-FS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASD 114 (228)
Q Consensus 55 ~~~~t~~~~~l~~~~~-~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 114 (228)
.|++|+.++.|+++++ .+ |+++++++..++|+..+|.++|+|+.++|+..+.|++.|...
T Consensus 113 ~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 192 (372)
T 1fp1_D 113 VYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 192 (372)
T ss_dssp EEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHH
T ss_pred eEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhh
Confidence 8999999998887765 22 556667663378888889999999999999999999999988
Q ss_pred cchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceE
Q 038208 115 SEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADA 194 (228)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~ 194 (228)
+....+.+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+
T Consensus 193 ~~~~~~~l~~-~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~ 270 (372)
T 1fp1_D 193 CATEMKRMLE-IYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDA 270 (372)
T ss_dssp HHHHHHHHHH-HCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEE
T ss_pred hHHHHHHHHH-Hhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCE
Confidence 7776777777 764 25678899999999999999999999999999999999999998778899999999988888999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++++||+|+|+++.++|++++++|+|||.
T Consensus 271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~ 301 (372)
T 1fp1_D 271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGK 301 (372)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999999999999963
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=260.67 Aligned_cols=211 Identities=28% Similarity=0.423 Sum_probs=186.1
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
+||+.+++|++++++||||+|.+ +|+|++| +||+|++.|+|++.+ ++.|++|+.++.|+
T Consensus 17 ~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~----~~~y~~t~~s~~l~- 89 (334)
T 2ip2_A 17 TGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT----RDGYANTPTSHLLR- 89 (334)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHTTS-
T ss_pred HHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC----CCeEecCHHHHHHh-
Confidence 58999999999999999999986 6999998 999999999999985 58999999999887
Q ss_pred CCCCC------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhh
Q 038208 68 ENPFS------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQ 129 (228)
Q Consensus 68 ~~~~~------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~ 129 (228)
+++.+ |+++++++. ++|+..+|.++|+|+.++|+..+.|++.| ..+....+.+++ .++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~-~~~- 165 (334)
T 2ip2_A 90 DVEGSFRDMVLFYGEEFHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPR-LLD- 165 (334)
T ss_dssp SSTTCSHHHHHHHTTHHHHHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHH-HSC-
T ss_pred CCCccHHHHHHHhcCchhhHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHH-hCC-
Confidence 65533 445555554 67877788999999999999999999999 877776777787 776
Q ss_pred hccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCC-ceEeeehhhh
Q 038208 130 IFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKLVF 201 (228)
Q Consensus 130 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p~-~D~v~~~~vl 201 (228)
+++ .+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+||+++.+|+++++|+ ||+|++++++
T Consensus 166 -~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl 243 (334)
T 2ip2_A 166 -FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRII 243 (334)
T ss_dssp -CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCG
T ss_pred -CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhc
Confidence 666 9999999999999999999999999999999888887764 47899999999987775 9999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+++++.++|++++++|+|||.
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pgG~ 267 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGDGR 267 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTTCE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999999973
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=264.28 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=179.3
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
+|++.+++|++++++||||+|+..++|+|++| +||+|++.|+|+++ ++.|++|+.+++|++
T Consensus 24 ~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~L~~ 98 (363)
T 3dp7_A 24 FGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-----EDRYVLAKAGWFLLN 98 (363)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-----TTEEEECHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-----CCEEecccchHHhhC
Confidence 68999999999999999999998447999998 99999999999986 589999999998887
Q ss_pred CCCC----------------ChHHhhccCCCCccccccC--CChhhhcccCccHHHH----HHHHHHhccchhHHHHHHH
Q 038208 68 ENPF----------------SLSSWFKGTELTLWGTVHG--IKFWEFLNQNPGINQR----FNEAMASDSEIMTSFVVKA 125 (228)
Q Consensus 68 ~~~~----------------~l~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~----f~~~m~~~~~~~~~~~~~~ 125 (228)
+++. .|+++++++. .++...+| .++|+++.++|+..+. |+..|.... ...++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~- 173 (363)
T 3dp7_A 99 DKMARVNMEFNHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALE- 173 (363)
T ss_dssp CHHHHHHHHHHHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHH-
T ss_pred CCcccchheeecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHH-
Confidence 6542 2777888876 45666777 6899999999987763 555555433 233455
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCC---CC-CceE
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQF---VP-PADA 194 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~---~p-~~D~ 194 (228)
.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++++ +| +||+
T Consensus 174 ~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~ 251 (363)
T 3dp7_A 174 IVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDA 251 (363)
T ss_dssp HHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSE
T ss_pred Hhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCE
Confidence 443 35678999999999999999999999999999999999987764 36899999999984 67 5999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++++||+|+++++.++|++++++|+|||.
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~ 282 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSK 282 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCE
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 9999999999999999999999999999973
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=249.62 Aligned_cols=214 Identities=25% Similarity=0.429 Sum_probs=185.5
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCC--eEeCChhchh
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEE--AYGLTASSTL 64 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~--~~~~t~~~~~ 64 (228)
++||+.+++|++++++||||+|.. +|+|++| +||+|++.|+|++.. ++ .|++|+.++.
T Consensus 24 ~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~----~~~~~y~~t~~s~~ 97 (374)
T 1qzz_A 24 LGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE----KQGRPLRPTRLGML 97 (374)
T ss_dssp TTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC----C-CCCCEECTTGGG
T ss_pred HHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeC----CCCeEEEEChHHHh
Confidence 468999999999999999999965 7999998 999999999999865 56 8999999998
Q ss_pred hhhCCCCChHHh--------------------hccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHH
Q 038208 65 LIKENPFSLSSW--------------------FKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVK 124 (228)
Q Consensus 65 l~~~~~~~l~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 124 (228)
|+++++.++..+ ++++. +++...+|.++|+++..+|+..+.|.+.|........+.+++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 176 (374)
T 1qzz_A 98 LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPAD 176 (374)
T ss_dssp GSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHH
T ss_pred hcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHH
Confidence 888776543322 23343 566667788999999999999999999999887777777888
Q ss_pred HhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCC-ceEee
Q 038208 125 AECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFL 196 (228)
Q Consensus 125 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p~-~D~v~ 196 (228)
.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++|+++.+|+++++|. ||+|+
T Consensus 177 -~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~ 253 (374)
T 1qzz_A 177 -AYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVL 253 (374)
T ss_dssp -TSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEE
T ss_pred -hCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEE
Confidence 776 67788999999999999999999999999999999888887764 35899999999887775 99999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++++|+|+++++.++|++++++|+|||
T Consensus 254 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG 281 (374)
T 1qzz_A 254 LSFVLLNWSDEDALTILRGCVRALEPGG 281 (374)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred EeccccCCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999997
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=245.90 Aligned_cols=213 Identities=25% Similarity=0.439 Sum_probs=185.7
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
+||+.+++|.+++++|||+.|.. +|+|++| +||+|++.|+|++.. ++.|++|+.++.|++
T Consensus 28 ~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~----~g~y~~t~~s~~l~~ 101 (360)
T 1tw3_A 28 GSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA----PGEFVPTEVGELLAD 101 (360)
T ss_dssp HCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEECTTGGGGST
T ss_pred HhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC----CCeEEeCHHHHHHhc
Confidence 58999999999999999999975 7999988 999999999999965 689999999999988
Q ss_pred CCCCChHH--------------------hhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhh
Q 038208 68 ENPFSLSS--------------------WFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAEC 127 (228)
Q Consensus 68 ~~~~~l~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 127 (228)
+++.++.. +++++. ++++..+|.++|+++..+|+..+.|...|........+.+++ .+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~-~~ 179 (360)
T 1tw3_A 102 DHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAA-AY 179 (360)
T ss_dssp TSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHH-HS
T ss_pred CCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHH-hC
Confidence 77654332 223343 456667788999999999999999999999888777777888 77
Q ss_pred hhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCC-ceEeeehh
Q 038208 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199 (228)
Q Consensus 128 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p~-~D~v~~~~ 199 (228)
+ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++++++.+|+++++|. ||+|++++
T Consensus 180 ~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 257 (360)
T 1tw3_A 180 D--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 257 (360)
T ss_dssp C--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred C--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcc
Confidence 6 67788999999999999999999999999999999888887653 35899999999987775 99999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++|+|+++++.++|++++++|+|||
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG 282 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGG 282 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999997
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=242.51 Aligned_cols=213 Identities=22% Similarity=0.313 Sum_probs=177.8
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc-hhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS-TLLI 66 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~-~~l~ 66 (228)
+||+.+++|++++++||||.|+. +|+|++| +||+|++.|+|+++ ++.|++|+.+ .+|.
T Consensus 40 ~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~~~~~l~ 112 (359)
T 1x19_A 40 KGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFS 112 (359)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee-----CCeEecCHHHHHHhc
Confidence 48999999999999999999987 6999998 99999999999998 4799999964 5777
Q ss_pred hCCC---CChHHhhccCC----C--Ccc--ccccCCChhhhcccCcc---HHHHHHHHHHhccc-hhHHHHHHHhhhhhc
Q 038208 67 KENP---FSLSSWFKGTE----L--TLW--GTVHGIKFWEFLNQNPG---INQRFNEAMASDSE-IMTSFVVKAECKQIF 131 (228)
Q Consensus 67 ~~~~---~~l~~~~~~~~----~--~~~--~~~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~ 131 (228)
++++ .++..++.... + ..+ ....|.+ |+|+.++|+ ..+.|.+.|..... ...+.+++ .++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~-~~~--~ 188 (359)
T 1x19_A 113 PTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE-EAK--L 188 (359)
T ss_dssp SSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHH-HCC--C
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHH-hcC--C
Confidence 7777 55443332100 0 000 0112334 788889999 99999999999888 77777888 776 6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~ 203 (228)
.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+||+++.+|+++ +++++|+|++++++|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~ 268 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYS 268 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGG
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhcc
Confidence 7789999999999999999999999999999999988887763 4579999999998 6677899999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+++.++|++++++|+|||.
T Consensus 269 ~~d~~~~~~l~~~~~~L~pgG~ 290 (359)
T 1x19_A 269 ANEQLSTIMCKKAFDAMRSGGR 290 (359)
T ss_dssp SCHHHHHHHHHHHHTTCCTTCE
T ss_pred CCHHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=240.07 Aligned_cols=206 Identities=17% Similarity=0.242 Sum_probs=169.5
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhch-hhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST-LLI 66 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~-~l~ 66 (228)
+||+.+++|++|+++||||+|.. |+|++| +||+|++.|+|++. ++.|.+|+.++ +|.
T Consensus 33 ~~~~~~~~l~~a~~lgif~~l~~---~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 33 DQYRQSAILHYAVADKLFDLTQT---GRTPAEVAASFGMVEGKAAILLHALAALGLLTKE-----GDAFRNTALTERYLT 104 (352)
T ss_dssp HTHHHHHHHHHHHHTTHHHHTTS---CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCChHHHhCC---CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec-----CCeeecCHHHHhhcc
Confidence 58999999999999999999963 899988 99999999999998 47899999997 666
Q ss_pred hCCCCC-----------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhh
Q 038208 67 KENPFS-----------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQ 129 (228)
Q Consensus 67 ~~~~~~-----------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~ 129 (228)
++++.+ |+++++++.+.+|+. ..++.++|+..+.|.++|...... ...+++ .++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~-~~~- 175 (352)
T 3mcz_A 105 TTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQP-MVDVVS-ELG- 175 (352)
T ss_dssp TTCTTCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHHHHHHHHHHHHH-HHHHHH-TCG-
T ss_pred CCChhhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHHHHHHHHhhhhh-HHHHHH-hCC-
Confidence 666654 344444444332221 123457899999999999883322 236677 777
Q ss_pred hccC-CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCC---CCC-ceEeee
Q 038208 130 IFEG-LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQF---VPP-ADAFLF 197 (228)
Q Consensus 130 ~~~~-~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~---~p~-~D~v~~ 197 (228)
+.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++++ .|+ ||+|++
T Consensus 176 -~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~ 254 (352)
T 3mcz_A 176 -VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVML 254 (352)
T ss_dssp -GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEE
T ss_pred -CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEE
Confidence 566 89999999999999999999999999999999988877653 36899999999984 554 999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++||+|+|+++.++|++++++|+|||.
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~ 282 (352)
T 3mcz_A 255 NDCLHYFDAREAREVIGHAAGLVKPGGA 282 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEE
T ss_pred ecccccCCHHHHHHHHHHHHHHcCCCCE
Confidence 9999999999999999999999999963
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=236.27 Aligned_cols=206 Identities=20% Similarity=0.218 Sum_probs=176.5
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc-hhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS-TLLI 66 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~-~~l~ 66 (228)
+||+.+++|++++++||||+|++ +|+|++| +||+|++.|+|++. ++.|++|+.+ ++|.
T Consensus 15 ~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-----~~~y~~t~~~~~~l~ 87 (335)
T 2r3s_A 15 NAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAMFLD 87 (335)
T ss_dssp TTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-----CCEEecCHHHHHHhc
Confidence 68999999999999999999997 6999988 99999999999986 5899999999 6888
Q ss_pred hCCCCChHHh-------------------hccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhh
Q 038208 67 KENPFSLSSW-------------------FKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAEC 127 (228)
Q Consensus 67 ~~~~~~l~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 127 (228)
++++.++..+ ++++. ++++ + |+++.++++..+.|.+.|..........+++ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (335)
T 2r3s_A 88 RQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQ-LV 159 (335)
T ss_dssp TTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHH-HH
T ss_pred cCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHH-hc
Confidence 7766543332 33332 2221 2 7888889999999999999887776777788 77
Q ss_pred hhhc--cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEee
Q 038208 128 KQIF--EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFL 196 (228)
Q Consensus 128 ~~~~--~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~ 196 (228)
+ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+++.+|+++ ++|+ ||+|+
T Consensus 160 ~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~ 237 (335)
T 2r3s_A 160 N--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVL 237 (335)
T ss_dssp T--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEE
T ss_pred c--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEE
Confidence 7 5 6788999999999999999999999999999999988877764 3579999999988 6664 99999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++++|+|+++++.++|++++++|+|||
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG 265 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEG 265 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999997
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=139.73 Aligned_cols=95 Identities=15% Similarity=0.242 Sum_probs=85.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..+++++ |+++++++|+ |.+++.|++ ..+|+++++|+.+ +++.+|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4567899999999999999999985 6789999999 899987763 4689999999988 677899999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||++++++...+|++++++|||||.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~ 173 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGA 173 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcE
Confidence 99999999888999999999999974
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=126.03 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=83.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-CceEeeehhhhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~ 204 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4568999999999999999999999999999999 888877653 3489999999987 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++...+|+++++.|+|||.
T Consensus 123 ~~~~~~~~l~~~~~~LkpgG~ 143 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKESGI 143 (234)
T ss_dssp CHHHHHHHHHHHHHHEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcE
Confidence 998888999999999999974
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=125.98 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=82.2
Q ss_pred CCCeEEEecCCC---cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC------------C--C
Q 038208 133 GLGSLVDVGGGN---GSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQF------------V--P 190 (228)
Q Consensus 133 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~------------~--p 190 (228)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 899987764 47899999999752 2 2
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|++..+||++++++...+|++++++|+|||.
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~ 191 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSY 191 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCE
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcE
Confidence 58999999999999998889999999999999974
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=122.27 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~ 207 (228)
....+|||||||+|.++..+++++ .+++++|+ +.+++.+++.++|+++.+|+.+ +++ .+|+|++..++|+++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 456799999999999999999886 47999999 8999999988999999999977 666 39999999999877543
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
++++++++.|||||.
T Consensus 116 ---~~~~e~~rvLkpgG~ 130 (257)
T 4hg2_A 116 ---RFWAELRRVARPGAV 130 (257)
T ss_dssp ---HHHHHHHHHEEEEEE
T ss_pred ---HHHHHHHHHcCCCCE
Confidence 689999999999974
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=121.26 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=80.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
....+|||||||+|.++..++++.| +++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 4578999999999999999999987 8999999 888887764 3789999999987 555 499999999988
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+..++...+|+++++.|+|||.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~ 137 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGK 137 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcE
Confidence 88888888999999999999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=116.07 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=85.7
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CceE
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQFVP--PADA 194 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~~~p--~~D~ 194 (228)
..+++ .+. ......+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+
T Consensus 35 ~~~~~-~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~ 110 (218)
T 3ou2_A 35 PAALE-RLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA 110 (218)
T ss_dssp HHHHH-HHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred HHHHH-HHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence 33444 443 2455679999999999999999998 679999999 888887765 3789999999987544 4999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++..++|++++++...+|+++++.|+|||.
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~ 141 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGV 141 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCeE
Confidence 9999999999998889999999999999974
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-15 Score=119.22 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=82.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-CCC--CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T----DNLKYIAGDMFQ-FVP--PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~----~rv~~~~gD~~~-~~p--~~D~v~ 196 (228)
.+..+|||||||+|.++..++++.|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4578999999999999999999999999999999 888887764 1 289999999965 332 499999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+..++|++++++..++|+++++.|+|||
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999888999999999999996
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-15 Score=116.86 Aligned_cols=100 Identities=18% Similarity=0.332 Sum_probs=85.0
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC-CceEe
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVP-PADAF 195 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p-~~D~v 195 (228)
.+++ .+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 36 ~~l~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 36 DILE-DVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHH-HHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHH-Hhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 4455 444 346789999999999999999997 678999999 888887765 2589999999987 554 59999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++..++|++++++...+|+++++.|+|||.
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 140 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGK 140 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCE
Confidence 999999999999888899999999999974
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=121.12 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=83.7
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p 190 (228)
...+++ .+. .....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 26 ~~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQ-IAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHH-HHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHH-HhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 445555 554 55778999999999999999999875 8999999 888887654 3689999999987 666
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|+++|. ..+|++++++|+|||.
T Consensus 101 ~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~ 135 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQ 135 (260)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred CCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCE
Confidence 39999999999999876 5899999999999974
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=118.24 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=80.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------------------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------------------~~rv~~~~gD~~~-~~p 190 (228)
+....+|||||||+|..+..++++ ..+++++|+ +.+++.+++ ..+++++++|+.+ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 568999999 888887653 2589999999988 433
Q ss_pred ---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 ---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+++.++|++++++..++++++++.|||||.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 49999999999999988888999999999999974
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-15 Score=117.75 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=82.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-CCC--CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T----DNLKYIAGDMFQ-FVP--PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~----~rv~~~~gD~~~-~~p--~~D~v 195 (228)
..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34678999999999999999999999899999999 888877653 1 289999999965 333 59999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++..++|++++++...+|+++++.|+|||.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 136 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEE
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999998889999999999999973
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=116.93 Aligned_cols=91 Identities=19% Similarity=0.343 Sum_probs=79.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~ 204 (228)
+.+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456689999999999999999998 557999999 8888877644 9999999876 455 39999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++...+|+++++.|||||.
T Consensus 115 ~~~~~~~~l~~~~~~LkpgG~ 135 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKYSSY 135 (240)
T ss_dssp CGGGHHHHHHHHHHHBCTTCC
T ss_pred CcHHHHHHHHHHHHHcCCCcE
Confidence 988889999999999999975
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-15 Score=119.98 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=82.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHH
Confidence 4567899999999999999999987 789999999 888876654 2799999999987 565 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|+|||.
T Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~ 154 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKPTGT 154 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEE
T ss_pred hcChHHHHHHHHHHHHHcCCCCE
Confidence 99888889999999999999974
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=113.69 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=77.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhhcC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHG 203 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~ 203 (228)
.+|||||||+|.++..++++ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 49999999999999999999 8899999999 888877664 3589999999988 665 3999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++. ..+|+++++.|+|||.
T Consensus 124 ~~~~--~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 124 WEDV--ATAFREIYRILKSGGK 143 (219)
T ss_dssp CSCH--HHHHHHHHHHEEEEEE
T ss_pred ccCH--HHHHHHHHHhCCCCCE
Confidence 9665 6899999999999974
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=115.56 Aligned_cols=97 Identities=14% Similarity=0.274 Sum_probs=83.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEe
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAF 195 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v 195 (228)
..+++ .++ ..+..+|||||||+|.++..+++ |+.+++++|+ |.+++.++...+++++.+|+.+ +++ .||+|
T Consensus 24 ~~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIIN-LLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHH-HHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHH-HhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence 33444 443 45678999999999999999998 6889999999 8999988876699999999987 555 49999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++++++|++++. ..+|+++++.|| ||
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk-gG 124 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR-DG 124 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC-SS
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC-Cc
Confidence 999999999765 689999999999 97
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=117.00 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CceEeeehh-hhcCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PADAFLFKL-VFHGLG 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D~v~~~~-vlh~~~ 205 (228)
.++..+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3566899999999999999999985 47999999 888888765 5689999999987 444 499999998 999986
Q ss_pred h-hHHHHHHHHHHHHhccCCC
Q 038208 206 D-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d-~~~~~il~~~~~aL~pgG~ 225 (228)
+ ++...+|+++++.|+|||.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~ 146 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGV 146 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcE
Confidence 4 6778999999999999974
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-15 Score=119.88 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=81.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence 3457899999999999999999987 567999999 888877664 2689999999977 555 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|+|||.
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~ 192 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGY 192 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeE
Confidence 99988889999999999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=120.96 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=80.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C---------------------------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T--------------------------- 175 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~--------------------------- 175 (228)
+....+|||||||+|.++..+++++|..+++++|+ +.+++.|++ .
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 34578999999999999999999999999999999 888876542 0
Q ss_pred ------------------------------CCeEEEeCCCCCCC------C--CceEeeehhhhcCC----ChhHHHHHH
Q 038208 176 ------------------------------DNLKYIAGDMFQFV------P--PADAFLFKLVFHGL----GDEDGLKIL 213 (228)
Q Consensus 176 ------------------------------~rv~~~~gD~~~~~------p--~~D~v~~~~vlh~~----~d~~~~~il 213 (228)
.+|+|+.+|+.... + .||+|++..+++++ +++...++|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 58999999998622 2 49999999998554 788889999
Q ss_pred HHHHHHhccCCC
Q 038208 214 KKRREAIASNGE 225 (228)
Q Consensus 214 ~~~~~aL~pgG~ 225 (228)
+++++.|+|||.
T Consensus 204 ~~~~~~LkpGG~ 215 (292)
T 3g07_A 204 RRIYRHLRPGGI 215 (292)
T ss_dssp HHHHHHEEEEEE
T ss_pred HHHHHHhCCCcE
Confidence 999999999974
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=113.59 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=85.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p 190 (228)
..+++ .+. .....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 27 ~~~~~-~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLK-EFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHH-HHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHH-HhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 44555 554 5667899999999999999999997 8889999999 888887764 3589999999987 555
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++. ..+|+++++.|+|||.
T Consensus 104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~ 138 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAY 138 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEE
T ss_pred CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeE
Confidence 39999999999999765 7899999999999974
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=116.56 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=79.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~ 112 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA 112 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCC
Confidence 4567899999999999999999988 678999999 888887753 3689999999987 343 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+|+++++.|||||.
T Consensus 113 ~~~~~~~--~~~l~~~~r~LkpgG~ 135 (256)
T 1nkv_A 113 TWIAGGF--AGAEELLAQSLKPGGI 135 (256)
T ss_dssp GGGTSSS--HHHHHHHTTSEEEEEE
T ss_pred hHhcCCH--HHHHHHHHHHcCCCeE
Confidence 9999865 7899999999999974
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=117.38 Aligned_cols=93 Identities=19% Similarity=0.384 Sum_probs=82.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
+.+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|+++.+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45678999999999999999999999999999999 888877653 3689999999987 554 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+|+++++.|+|||.
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~ 137 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGT 137 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcE
Confidence 9999887 4899999999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=113.32 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhH
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDED 208 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~ 208 (228)
..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999998 568999999 888888775 6789999999987 554 499999999999999888
Q ss_pred HHHHHHHHHHHhccCCC
Q 038208 209 GLKILKKRREAIASNGE 225 (228)
Q Consensus 209 ~~~il~~~~~aL~pgG~ 225 (228)
...+|+++++.|+|||.
T Consensus 120 ~~~~l~~~~~~L~pgG~ 136 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGG 136 (203)
T ss_dssp HHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHcCCCcE
Confidence 89999999999999974
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=118.14 Aligned_cols=92 Identities=21% Similarity=0.344 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 4567899999999999999999986 469999999 888877653 3689999999988 665 399999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. ..+|+++++.|||||.
T Consensus 159 ~l~~~~~~--~~~l~~~~~~LkpgG~ 182 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKPRGV 182 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred hhhhcCCH--HHHHHHHHHHcCCCeE
Confidence 99999884 7899999999999974
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=115.12 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=81.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC-------CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP-------PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p-------~~D~v~~~ 198 (228)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34568999999999999999999988 7999999 888887754 4589999999987 322 28999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|++++++...+|+++++.|+|||.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~ 158 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGA 158 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCE
Confidence 999999988889999999999999974
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=114.96 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=78.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~ 205 (228)
+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 5789999999999999999998765 8999999 888887764 4789999999977 554 499999999999996
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+. ..+|+++++.|+|||.
T Consensus 123 ~~--~~~l~~~~~~LkpgG~ 140 (253)
T 3g5l_A 123 SF--DDICKKVYINLKSSGS 140 (253)
T ss_dssp CH--HHHHHHHHHHEEEEEE
T ss_pred hH--HHHHHHHHHHcCCCcE
Confidence 64 7899999999999974
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=118.14 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=84.7
Q ss_pred hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-Cce
Q 038208 118 MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PAD 193 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D 193 (228)
....+++ .+. ..+..+|||||||+|.++..+++ |..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||
T Consensus 45 ~~~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 45 YGEDLLQ-LLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp SCCHHHH-HHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHH-HhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcC
Confidence 3445556 554 45678999999999999999998 7889999999 888887765 4789999999987 444 499
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+++.++|++++. ..+|+++++.|+|||.
T Consensus 120 ~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~ 149 (279)
T 3ccf_A 120 AVFSNAMLHWVKEP--EAAIASIHQALKSGGR 149 (279)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred EEEEcchhhhCcCH--HHHHHHHHHhcCCCcE
Confidence 99999999998876 5899999999999974
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-14 Score=118.73 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=81.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..+++.+|. .+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .||+|+++.++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999995 89999999 888876653 3489999999987 455 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++. ..+|+++++.|+|||.
T Consensus 100 ~~~~~~--~~~l~~~~~~LkpgG~ 121 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKKGGK 121 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEEEEE
T ss_pred hcCCCH--HHHHHHHHHHcCCCCE
Confidence 999877 5899999999999974
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=117.00 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 4567899999999999999999986 678999999 888877664 3589999999987 555 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|+++ ...+|+++++.|||||.
T Consensus 194 ~l~~~~---~~~~l~~~~~~LkpgG~ 216 (312)
T 3vc1_A 194 STMYVD---LHDLFSEHSRFLKVGGR 216 (312)
T ss_dssp CGGGSC---HHHHHHHHHHHEEEEEE
T ss_pred chhhCC---HHHHHHHHHHHcCCCcE
Confidence 999994 57899999999999974
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-14 Score=115.73 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p 190 (228)
..+++ .++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 51 DEMIA-LLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHH-HSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHH-hcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 34455 444 5567899999999999999999987 689999999 788776653 4589999999987 565
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++. ..+|+++++.|+|||.
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~ 161 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLRPGGT 161 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEE
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeE
Confidence 39999999999999876 6899999999999974
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=116.44 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
+.+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ .++++++.+|+.+....||+|++..++|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE 140 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchh
Confidence 45678999999999999999997775 49999999 888876653 3689999999965114599999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|||||.
T Consensus 141 ~~~~~~~~~~l~~~~~~LkpgG~ 163 (287)
T 1kpg_A 141 HFGHERYDAFFSLAHRLLPADGV 163 (287)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCE
T ss_pred hcChHHHHHHHHHHHHhcCCCCE
Confidence 99877778999999999999974
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=113.36 Aligned_cols=99 Identities=17% Similarity=0.332 Sum_probs=82.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p- 190 (228)
..+++ .+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 11 ~~~~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMIK-TAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHH-HHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred chHHH-HhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 33445 444 56788999999999999999999875 8999999 888877654 3689999999977 555
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++. ..+|+++++.|+|||.
T Consensus 86 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~ 119 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGR 119 (239)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred CcEEEEEECCchhhccCH--HHHHHHHHHHcCCCcE
Confidence 39999999999999875 6899999999999974
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=116.20 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~d 206 (228)
.....+|||||||+|.++..+++++|..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|+++.++|++++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 110 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPD 110 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTT
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCC
Confidence 45678999999999999999999999999999999 888887765 5789999999977 422 4999999999999976
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+|+++++.|+|||.
T Consensus 111 ~--~~~l~~~~~~L~pgG~ 127 (259)
T 2p35_A 111 H--LAVLSQLMDQLESGGV 127 (259)
T ss_dssp H--HHHHHHHGGGEEEEEE
T ss_pred H--HHHHHHHHHhcCCCeE
Confidence 4 6899999999999974
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=116.63 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCcH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 038208 133 GLGSLVDVGGGNGS----FSRIISEAFP----GIKCTVLDL-PHVVANLPET---------------------------- 175 (228)
Q Consensus 133 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~~~---------------------------- 175 (228)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 8888876531
Q ss_pred ---------CCeEEEeCCCCC-CCC---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 176 ---------DNLKYIAGDMFQ-FVP---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 176 ---------~rv~~~~gD~~~-~~p---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|..+|+.+ ++| .||+|+++++|++++++...+++++++++|+|||.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~ 247 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL 247 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcE
Confidence 369999999998 455 49999999999999999889999999999999974
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=109.01 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=83.9
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-C
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p-~ 191 (228)
.+++ .++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .
T Consensus 23 ~l~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 23 EVLE-AVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHH-HTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHH-Hhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 4455 444 445679999999999999999987 679999999 888887654 3479999999987 444 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..++|++++++...+|+++++.|+|||.
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~ 131 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999988889999999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=112.68 Aligned_cols=91 Identities=24% Similarity=0.328 Sum_probs=77.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhhhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~ 204 (228)
....+|||||||+|.++..++++.+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 4568999999999999999998732 38999999 888877654 3579999999987 554 49999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++. ..+|+++++.|+|||.
T Consensus 121 ~~~--~~~l~~~~~~L~pgG~ 139 (243)
T 3bkw_A 121 EDV--ARLFRTVHQALSPGGH 139 (243)
T ss_dssp SCH--HHHHHHHHHHEEEEEE
T ss_pred chH--HHHHHHHHHhcCcCcE
Confidence 764 6899999999999974
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-14 Score=116.33 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=79.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-CCC--------Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ-FVP--------PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~-~~p--------~~ 192 (228)
.+..+|||||||+|.++..+++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8999999999 888887753 4699999999987 432 49
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++..++|++ + ...+|+++++.|+|||.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~ 144 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGT 144 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcE
Confidence 999999999999 3 47899999999999974
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-14 Score=112.68 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=80.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC-CceEeeehhhhcCCChh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~d~ 207 (228)
+.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++..+++++.+|+.+ +.+ .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 568999999 8888877754478889999877 423 49999999999999988
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
+...+|+++++.|+|||.
T Consensus 119 ~~~~~l~~~~~~LkpgG~ 136 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGL 136 (211)
T ss_dssp HHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcE
Confidence 889999999999999974
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=115.70 Aligned_cols=92 Identities=5% Similarity=-0.036 Sum_probs=79.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------TDNLKYIAGDMFQ 187 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------------------~~rv~~~~gD~~~ 187 (228)
....+|||||||+|..+..++++ +.+++++|+ +.+++.+++ ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 568999999 888876632 2589999999988
Q ss_pred -CC---CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 188 -FV---PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 188 -~~---p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+. ..||+|+.+.+||++++++...+++++++.|||||.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~ 186 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQ 186 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeE
Confidence 43 349999999999999988888999999999999974
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-14 Score=113.38 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=77.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CceEeeehhhhcCCCh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d 206 (228)
.+..+|||||||+|.++..++++++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.++||++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567899999999999999999876 6999999 888887764 2289999999977433 4999999999999987
Q ss_pred hHHHHHHHHHH-HHhccCCC
Q 038208 207 EDGLKILKKRR-EAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~-~aL~pgG~ 225 (228)
. ..+|++++ +.|+|||.
T Consensus 119 ~--~~~l~~~~~~~LkpgG~ 136 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGR 136 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEE
T ss_pred H--HHHHHHHHHHhcCCCCE
Confidence 6 68999999 99999974
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=113.42 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=78.4
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
..+|||||||+|.++..+++ +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 46999999999999999977 5778999999 888877654 2569999999988333 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++++...+|+++++.|+|||.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~ 166 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGE 166 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcE
Confidence 9988889999999999999974
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=115.48 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=83.9
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPA 192 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~ 192 (228)
.+++ .+. ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ .++++++.+|+.+.-..|
T Consensus 63 ~~~~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 63 LALD-KLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHH-HcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 3444 443 45678999999999999999999987 89999999 888877764 358999999997642259
Q ss_pred eEeeehhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++..++|+++| +....+|+++++.|||||.
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~ 178 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 178 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 99999999999954 6678999999999999974
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=110.73 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=79.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~ 203 (228)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 456789999999999999999998 568999999 888887765 5789999999987 555 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++. ..+|+++++.|+|||.
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~ 148 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGY 148 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeE
Confidence 9766 5899999999999974
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=109.76 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CceEee-ehhhhcCCCh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PADAFL-FKLVFHGLGD 206 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D~v~-~~~vlh~~~d 206 (228)
.+..+|||||||+|.++..++++++ +++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|+ +..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999976 8999999 888887765 5689999999987 444 499999 4558888754
Q ss_pred -hHHHHHHHHHHHHhccCCC
Q 038208 207 -EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 -~~~~~il~~~~~aL~pgG~ 225 (228)
++...+|+++++.|+|||.
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~ 136 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGV 136 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeE
Confidence 6778999999999999974
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=115.67 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=80.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+....||+|++..++|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFE 166 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHH
Confidence 4567899999999999999999987 569999999 888877653 3679999999965213599999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|+|||.
T Consensus 167 ~~~~~~~~~~l~~~~~~LkpgG~ 189 (318)
T 2fk8_A 167 HFGHENYDDFFKRCFNIMPADGR 189 (318)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcE
Confidence 99887789999999999999974
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-14 Score=119.40 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=80.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIIS-EAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 6789999999999 888877653 3469999999987 444 499999999
Q ss_pred hhcCCChh-HHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. ....+|+++++.|+|||.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~ 222 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGA 222 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeE
Confidence 99999654 445799999999999974
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=115.16 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCeEEEeCCCCC-CCC-CceEeee-hh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----T----DNLKYIAGDMFQ-FVP-PADAFLF-KL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~----~rv~~~~gD~~~-~~p-~~D~v~~-~~ 199 (228)
...+|||||||+|.++..++++ ..+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|++ ..
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCc
Confidence 4459999999999999999998 578999999 888887764 1 789999999988 555 4998885 57
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++++...+|+++++.|+|||.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~ 185 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGK 185 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcE
Confidence 88888888889999999999999974
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=110.74 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=77.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 888876643 4789999999977 555 39999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++. ..+|+++++.|+|||.
T Consensus 115 ~~~~~~--~~~l~~~~~~L~pgG~ 136 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKPGGA 136 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEEEEE
T ss_pred hhcCCH--HHHHHHHHHHCCCCcE
Confidence 999864 6899999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-14 Score=121.63 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-----PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-----~~D~v~~~~v 200 (228)
+..+||||| |+|.++..+++..|+.+++++|+ |.+++.+++ ..+|+++.+|+.+++| .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 467999999 99999999999999899999999 899987764 2389999999987443 4999999877
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+|... ...++++++++|+|||
T Consensus 251 ~~~~~---~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 251 ETLEA---IRAFVGRGIATLKGPR 271 (373)
T ss_dssp SSHHH---HHHHHHHHHHTBCSTT
T ss_pred CchHH---HHHHHHHHHHHcccCC
Confidence 65442 4889999999999998
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=112.65 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=78.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 455679999999999999999999986 9999999 888877653 4679999999976 555 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|+++ ...+|+++++.|+|||.
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~pgG~ 145 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKKGGF 145 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEEEEE
T ss_pred hHhhcC---HHHHHHHHHHHcCCCcE
Confidence 999983 35799999999999974
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=113.36 Aligned_cols=101 Identities=26% Similarity=0.229 Sum_probs=85.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~ 191 (228)
..+++ .++ .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .
T Consensus 110 ~~~~~-~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 184 (286)
T 3m70_A 110 GDVVD-AAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQEN 184 (286)
T ss_dssp HHHHH-HHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSC
T ss_pred HHHHH-Hhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCC
Confidence 34455 554 346789999999999999999998 568999999 888877664 2389999999987 444 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..++|+++++....+|+++++.|+|||.
T Consensus 185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 218 (286)
T 3m70_A 185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGY 218 (286)
T ss_dssp EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 9999999999999999889999999999999974
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=109.52 Aligned_cols=92 Identities=18% Similarity=0.323 Sum_probs=78.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CceEeeehhhhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQFVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~ 204 (228)
.+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 127 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYL 127 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGS
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhC
Confidence 456799999999999999999985 48999999 888877654 4589999999988323 49999999999999
Q ss_pred Ch-hHHHHHHHHHHHHhccCCC
Q 038208 205 GD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d-~~~~~il~~~~~aL~pgG~ 225 (228)
++ +...++|+++++.|+|||.
T Consensus 128 ~~~~~~~~~l~~~~~~L~pgG~ 149 (216)
T 3ofk_A 128 EDMTQMRTAIDNMVKMLAPGGH 149 (216)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCE
Confidence 86 5667899999999999974
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=113.20 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999999887 568999999 888887664 2369999999876 444 399999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|+|||.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~ 180 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGI 180 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeE
Confidence 99998888999999999999974
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=108.22 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeeh-hhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFK-LVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~-~vlh 202 (228)
.+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++. ..+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 35679999999999999999987 568999999 888887764 3479999999987 445 49999976 4667
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++++...+|+++++.|+|||.
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~ 140 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGV 140 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeE
Confidence 77878889999999999999974
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=107.34 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
.....+|||||||+|.++..++.. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555544 5679999999 888887664 4689999999987 555 39999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++++...+++++++.|+|||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~ 123 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGL 123 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcE
Confidence 999888889999999999999974
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=118.76 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=80.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCeEEEeCCCCC-------C
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPET--------------DNLKYIAGDMFQ-------F 188 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~~--------------~rv~~~~gD~~~-------~ 188 (228)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 8899999999 8888776641 699999999976 4
Q ss_pred CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ .||+|++..++|++++. ..+|+++++.|||||.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~ 198 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGE 198 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCE
Confidence 44 39999999999999875 6899999999999974
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=113.66 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..+++. |..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 356789999999999999999998 8889999999 888877654 3789999999977 554 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++ +. ..+|+++++.|+|||.
T Consensus 123 ~~~~~-~~--~~~l~~~~~~LkpgG~ 145 (267)
T 3kkz_A 123 AIYNI-GF--ERGLNEWRKYLKKGGY 145 (267)
T ss_dssp CGGGT-CH--HHHHHHHGGGEEEEEE
T ss_pred Cceec-CH--HHHHHHHHHHcCCCCE
Confidence 99999 33 6789999999999974
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-14 Score=115.49 Aligned_cols=93 Identities=19% Similarity=0.158 Sum_probs=79.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C---CC--Cce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ-F---VP--PAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~-~---~p--~~D 193 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 3467899999999999999999984 48999999 888877642 3678999999977 4 44 499
Q ss_pred Eeeeh-hhhcCCCh-----hHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFK-LVFHGLGD-----EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~-~vlh~~~d-----~~~~~il~~~~~aL~pgG~ 225 (228)
+|++. +++|++++ ++..++|+++++.|+|||.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 170 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeE
Confidence 99998 89999988 7789999999999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=101.84 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=81.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeeh-hhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFK-LVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~-~vlh~~ 204 (228)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+|+|++. .++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 356789999999999999999987 568999999 888887765 5679999999987 555 49999998 899999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++...+|+++++.|+|||.
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~ 142 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGR 142 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCE
Confidence 888889999999999999974
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=114.10 Aligned_cols=89 Identities=22% Similarity=0.386 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F-VP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~-~p--~~D~v~~~~v 200 (228)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999998 678999999 888887764 2789999999987 3 33 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+|+++++.|+|||.
T Consensus 146 l~~~~~~--~~~l~~~~~~LkpgG~ 168 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRPGGV 168 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEEEEE
T ss_pred hhcccCH--HHHHHHHHHHcCCCeE
Confidence 9999876 6899999999999974
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=108.48 Aligned_cols=93 Identities=13% Similarity=0.230 Sum_probs=78.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC-CCC--CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQ-FVP--PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~-~~p--~~D~v 195 (228)
+.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 456789999999999999999998 679999999 777776543 2368999999987 554 49999
Q ss_pred eehhhhcCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
++..++|++++ ++...+|+++++.|+|||.
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~ 136 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAY 136 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeE
Confidence 99999999975 4567899999999999974
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=108.04 Aligned_cols=92 Identities=20% Similarity=0.339 Sum_probs=78.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehh-hh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKL-VF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~-vl 201 (228)
+....+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 445689999999999999999887 78999999 888887764 3689999999977 455 499999986 88
Q ss_pred cCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++ ++++...+|+++++.|+|||.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~ 132 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGK 132 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeE
Confidence 887 567788999999999999974
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=108.46 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehh-hhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKL-VFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~-vlh~ 203 (228)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999998 468999999 888887764 2389999999987 454 599999998 9999
Q ss_pred CC-hhHHHHHHHHHHHHhccCCC
Q 038208 204 LG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
++ +++...+|+++++.|+|||.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~ 137 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGV 137 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcE
Confidence 85 46778999999999999974
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-14 Score=106.10 Aligned_cols=89 Identities=22% Similarity=0.415 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d 206 (228)
..+..+|||||||+|.++..+++++. +++++|+ +.+++.+++ .++++++.+| .+++ .||+|++..++|++++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccchhcccC
Confidence 56678999999999999999999874 8999999 888887765 6799999999 4444 4999999999999976
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+++++++.|+|||.
T Consensus 91 ~--~~~l~~~~~~L~pgG~ 107 (170)
T 3i9f_A 91 K--QHVISEVKRILKDDGR 107 (170)
T ss_dssp H--HHHHHHHHHHEEEEEE
T ss_pred H--HHHHHHHHHhcCCCCE
Confidence 5 6899999999999974
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=102.89 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=80.3
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CC
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---PP 191 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p~ 191 (228)
++. .+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+.+ +.
T Consensus 32 ~l~-~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 32 TLS-KLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHH-HTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHH-HcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 344 444 56678999999999999999999999999999999 888887764 378999999997633 45
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|++...++ ....+++++.+.|+|||.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~ 137 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGV 137 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCE
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeE
Confidence 99999988776 346899999999999974
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-13 Score=104.67 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 456789999999999999999998765 8999999 888876654 3689999999987 555 499999998887
Q ss_pred CCC-------------hhHHHHHHHHHHHHhccCCC
Q 038208 203 GLG-------------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~-------------d~~~~~il~~~~~aL~pgG~ 225 (228)
.+. .++...+|+++++.|+|||.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 154 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGR 154 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCE
Confidence 654 45668999999999999974
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=110.68 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CceEeee---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ---FVP--PADAFLF--- 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~---~~p--~~D~v~~--- 197 (228)
....+|||||||+|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|... +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999988774 7999999 999988764 5678999998754 344 3888764
Q ss_pred --hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 --KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 --~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...++++++ ...+++++++.|||||+
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkPGG~ 165 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKPGGV 165 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEE
T ss_pred ecccchhhhcc--hhhhhhhhhheeCCCCE
Confidence 445555544 47899999999999974
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-13 Score=101.74 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC----CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV----PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~----p~~D~v~~~ 198 (228)
.....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .+++ ++.+|..+.+ ..||+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 45667999999999999999999999999999999 778877653 3378 8889986643 349999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|+ ..+++++++.|+|||.
T Consensus 102 ~~~~~------~~~l~~~~~~L~~gG~ 122 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPVGGR 122 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCTTCE
T ss_pred CcccH------HHHHHHHHHhcCCCCE
Confidence 99986 5789999999999974
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=109.77 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCcHHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCeEE--EeCCCCC-C------C
Q 038208 133 GLGSLVDVGGGNGSFSR----IISEAFPGIKC--TVLDL-PHVVANLPE-------TDNLKY--IAGDMFQ-F------V 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~Dl-p~~i~~a~~-------~~rv~~--~~gD~~~-~------~ 189 (228)
+..+|||||||+|.++. .++.++|+.++ +++|. +++++.+++ .+++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 35689999999997654 45567788854 99999 888876643 234544 4555532 1 2
Q ss_pred C--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 P--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ .||+|+++++||+++|. .+.|+++++.|||||.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~ 167 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAK 167 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEE
T ss_pred CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcE
Confidence 3 39999999999999886 5789999999999974
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=112.99 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=74.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCCCCC-CC----
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------TDNLKYIAGDMFQ-FV---- 189 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------~~rv~~~~gD~~~-~~---- 189 (228)
+....+|||||||+|..+..+++.++..+++++|+ +.+++.|++ .++|+|+.+|+++ ++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~ 250 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 250 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc
Confidence 56778999999999999999999888778999999 666655532 2789999999988 54
Q ss_pred CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|+|+++.+++ + ++....|+++++.|||||.
T Consensus 251 ~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGr 283 (438)
T 3uwp_A 251 ANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGR 283 (438)
T ss_dssp HTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCE
T ss_pred CCccEEEEccccc-C--chHHHHHHHHHHcCCCCcE
Confidence 3599999988764 3 3346778999999999974
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=107.04 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C-CCeEEEeCCCCC----CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--T-DNLKYIAGDMFQ----FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~-~rv~~~~gD~~~----~~p- 190 (228)
..++. .+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ . ..+..-..|+.. ..+
T Consensus 35 ~~il~-~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 35 ENDIF-LEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHH-TTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHH-hcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 44455 444 566789999999999999999987 468999999 889987764 1 122222222211 122
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++++...+++++++.| |||.
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~ 143 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT 143 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE
Confidence 499999999999999988899999999999 9975
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=107.17 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred HHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------
Q 038208 105 QRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------- 174 (228)
Q Consensus 105 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------- 174 (228)
+.|++.+.. .....+++ .+.....+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++
T Consensus 10 r~~~~~~k~---~l~~~~~~-~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 10 RNFNNWMKS---VLIGEFLE-KVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHH---HHHHHHHH-HHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhccHHHHH---HHHHHHHH-HhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 345555443 22333444 33322246789999999999999999884 6779999999 888876653
Q ss_pred ----CCCeEEEeCCCCC-C----C--C--CceEeeehhhhcCC--ChhHHHHHHHHHHHHhccCCC
Q 038208 175 ----TDNLKYIAGDMFQ-F----V--P--PADAFLFKLVFHGL--GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ----~~rv~~~~gD~~~-~----~--p--~~D~v~~~~vlh~~--~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+++++++|+.+ + + + .||+|++..++|+. +.++...+|+++++.|+|||.
T Consensus 85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~ 150 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY 150 (313)
T ss_dssp CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcE
Confidence 2379999999977 3 3 2 49999999999976 446678999999999999974
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=107.91 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=79.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-C--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FV-P--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~-p--~~D~v~~~ 198 (228)
+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5668999999 888877654 2579999999987 55 3 39999999
Q ss_pred hhhcC--CChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHG--LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~--~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|+ .+.++...+|+++++.|+|||.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~ 169 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGY 169 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 99998 6677789999999999999974
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=103.04 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~ 205 (228)
.+..+|||||||+|.++..+ .. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 36789999999999999887 45 8999999 888887765 4789999999987 555 399999999999998
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+. .++|+++++.|+|||.
T Consensus 110 ~~--~~~l~~~~~~L~pgG~ 127 (211)
T 2gs9_A 110 DV--ERVLLEARRVLRPGGA 127 (211)
T ss_dssp CH--HHHHHHHHHHEEEEEE
T ss_pred CH--HHHHHHHHHHcCCCCE
Confidence 65 6899999999999974
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=111.94 Aligned_cols=94 Identities=27% Similarity=0.390 Sum_probs=77.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQFVP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~~p--~~D~v~~~~ 199 (228)
....+|||||||+|.++..+++++|..+++++|+ +.+++.+++ ..+++++.+|++++++ .||+|++.-
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 3448999999999999999999999999999999 888887764 1268999999998766 499999998
Q ss_pred hhcC---CChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHG---LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~---~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|. ..+....++++++++.|+|||.
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~ 329 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGE 329 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcE
Confidence 8885 3455667899999999999974
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=102.82 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=70.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCeEEEeCCCCC-CCC-CceEee-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN----LPE------TDNLKYIAGDMFQ-FVP-PADAFL- 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~----a~~------~~rv~~~~gD~~~-~~p-~~D~v~- 196 (228)
..+..+|||||||+|.++..+++++|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++ +.|.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999999 776653 221 4589999999987 544 225554
Q ss_pred --ehhhhc--CCChhHHHHHHHHHHHHhccCCC
Q 038208 197 --FKLVFH--GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 --~~~vlh--~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
....+| +.++. ..+|+++++.|||||.
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~ 135 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGAS 135 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEE
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcE
Confidence 222232 34443 6889999999999974
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=101.45 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p--~~D~v~~~~v 200 (228)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 888887764 3689999999986 3 44 3999998865
Q ss_pred hcCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
.+ |... ....+++++++.|+|||.
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 151 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGE 151 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCCCcE
Confidence 43 3221 125799999999999974
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=106.64 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=75.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~~~~v 200 (228)
+....+|||||||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|..+ +.++ ||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35688999999999999999999999999999999 889987764 225666 67655 3343 999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.. ++ ....+.+++++|+|||+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~pggv 147 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHTQNF 147 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhCCCCE
Confidence 9999 44 35666699999999975
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=103.44 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=74.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CceEeeehhhhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~~ 205 (228)
.+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++ .||+|++..++|+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 45789999999999999999998 4 89999999 8888777642 24788999865 344 399999999999998
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+. ..+|+++++.|+|||.
T Consensus 108 ~~--~~~l~~~~~~L~~gG~ 125 (230)
T 3cc8_A 108 DP--WAVIEKVKPYIKQNGV 125 (230)
T ss_dssp CH--HHHHHHTGGGEEEEEE
T ss_pred CH--HHHHHHHHHHcCCCCE
Confidence 76 5899999999999974
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=118.47 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=81.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCeEEEeCCCCC-CCC--CceE
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------------TDNLKYIAGDMFQ-FVP--PADA 194 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------------~~rv~~~~gD~~~-~~p--~~D~ 194 (228)
.+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999998 5679999999 888877643 3579999999987 444 4999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
|++..++|+++++....+++++++.|+||
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999999998889999999999998
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-13 Score=105.43 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF----VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~----~p--~~D~v~~~~ 199 (228)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 888876653 46899999998652 44 389998875
Q ss_pred hhcCCChh-HH------HHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDE-DG------LKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~-~~------~~il~~~~~aL~pgG~ 225 (228)
... |+.. .. ..+++++++.|||||.
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~ 145 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQLGGV 145 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcE
Confidence 543 3322 11 2599999999999974
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=113.68 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=83.3
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p- 190 (228)
..+++ .+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++ .++|+++.+|+.+ ++|
T Consensus 148 ~~il~-~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 148 RAILQ-NHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHH-TGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHH-hhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 34444 443 34568999999999999998887 57889999999557766553 3789999999988 666
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++.+++....+.++++.|+|||.
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~ 258 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN 258 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEE
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCE
Confidence 49999999888888888888899999999999974
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=105.22 Aligned_cols=100 Identities=10% Similarity=0.156 Sum_probs=77.5
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCeEEEeCC-
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PH------VVANLPE-------TDNLKYIAGD- 184 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~------~i~~a~~-------~~rv~~~~gD- 184 (228)
.+++ .++ +.+..+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ .++++++.+|
T Consensus 34 ~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 34 AIAE-AWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHH-HHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHH-HcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 3445 444 5677899999999999999999996 8899999999 44 6665543 2689999998
Q ss_pred CCC---CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 185 MFQ---FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 185 ~~~---~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.. +++ .||+|++..++|++++.. .+++.+...++|||.
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~ 154 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDH 154 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSE
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCE
Confidence 543 333 399999999999998875 367777777777863
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-13 Score=112.45 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=83.1
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-Cc
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-PA 192 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-~~ 192 (228)
..+++ .++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+++..+ .|
T Consensus 186 ~~ll~-~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 186 QLLLS-TLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHH-HSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHH-hcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 33444 443 23456999999999999999999999999999999 788877664 3457889999987434 59
Q ss_pred eEeeehhhhcC---CChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHG---LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~---~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+++.++|+ ++.+...++++++++.|+|||.
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~ 298 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGE 298 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcE
Confidence 99999999986 3556678999999999999974
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=101.17 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p--~~D~v~~~~v 200 (228)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 467999999999999999999999999999999 888877653 3689999999976 3 44 3898876543
Q ss_pred hcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.. |+... ...+|+++++.|+|||.
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~LkpgG~ 148 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGKGGS 148 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCCCCE
Confidence 32 32210 25789999999999974
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=110.47 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=78.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ +.| .+|+|++..++
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMG 126 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCB
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCch
Confidence 346789999999999999999886 5679999999556665543 3789999999987 555 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++..+.....++++++.|+|||.
T Consensus 127 ~~~~~~~~~~~l~~~~~~LkpgG~ 150 (348)
T 2y1w_A 127 YMLFNERMLESYLHAKKYLKPSGN 150 (348)
T ss_dssp TTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred hcCChHHHHHHHHHHHhhcCCCeE
Confidence 888877778889999999999974
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=105.79 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~~D~v~~~~vlh 202 (228)
+....+|||||||+|.++..++.+.++.+++++|+ |++++.|++ .++|+++.+|..+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 56789999999999988877777778999999999 999988874 3799999999977 3235999997654
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ++..++++++++.|||||.
T Consensus 198 -~--~d~~~~l~el~r~LkPGG~ 217 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDTETR 217 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCTTCE
T ss_pred -c--cCHHHHHHHHHHHcCCCcE
Confidence 2 3347899999999999974
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=95.91 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CceEeeehhhhcCCChh-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGDE- 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d~- 207 (228)
.+..+|||||||+|.++..++++. +++++|+ +.+++. ..+++++.+|+.++++ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999987 9999999 888887 5789999999988665 49999999888865544
Q ss_pred ------HHHHHHHHHHHHhccCCC
Q 038208 208 ------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ------~~~~il~~~~~aL~pgG~ 225 (228)
+...+++++.+.+ |||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~ 118 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGM 118 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSE
T ss_pred cccCCcchHHHHHHHHhhC-CCCE
Confidence 4567899999999 8864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=102.34 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHH
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDG 209 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~ 209 (228)
..+|||||||+|.++..++++ +++|+ +.+++.+++. +++++.+|+.+ +++ .||+|++..++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988765 99999 8888877654 89999999977 554 39999999999999765
Q ss_pred HHHHHHHHHHhccCCC
Q 038208 210 LKILKKRREAIASNGE 225 (228)
Q Consensus 210 ~~il~~~~~aL~pgG~ 225 (228)
..+|+++++.|+|||.
T Consensus 119 ~~~l~~~~~~L~pgG~ 134 (219)
T 1vlm_A 119 ERALKEAYRILKKGGY 134 (219)
T ss_dssp HHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHcCCCcE
Confidence 6899999999999974
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-12 Score=96.85 Aligned_cols=99 Identities=18% Similarity=0.341 Sum_probs=79.8
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CeEEEeCCCCCCCC-
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TD--NLKYIAGDMFQFVP- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~--rv~~~~gD~~~~~p- 190 (228)
.+++ .+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .. |++++.+|+.+..+
T Consensus 43 ~l~~-~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 43 ILVE-NVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHH-HCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHH-Hcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 3444 443 446789999999999999999998 779999999 888877653 23 49999999988544
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|++..++| +..+....+++++++.|+|||.
T Consensus 118 ~~~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~ 152 (194)
T 1dus_A 118 RKYNKIITNPPIR-AGKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp SCEEEEEECCCST-TCHHHHHHHHHHHHHHEEEEEE
T ss_pred CCceEEEECCCcc-cchhHHHHHHHHHHHHcCCCCE
Confidence 499999988887 4456678999999999999974
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.9e-12 Score=102.56 Aligned_cols=93 Identities=24% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCCeEEEecCCC--cHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--C----Cce
Q 038208 133 GLGSLVDVGGGN--GSFSRIISE-AFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V--P----PAD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~--G~~~~~l~~-~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~--p----~~D 193 (228)
+..+|||||||+ +..+.++++ ..|+.+++++|. |.|++.++. ..+++++.+|+.++ + | .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 568999999997 444555554 689999999999 999998874 24799999999873 1 1 244
Q ss_pred -----EeeehhhhcCCChhH-HHHHHHHHHHHhccCCC
Q 038208 194 -----AFLFKLVFHGLGDED-GLKILKKRREAIASNGE 225 (228)
Q Consensus 194 -----~v~~~~vlh~~~d~~-~~~il~~~~~aL~pgG~ 225 (228)
.++++.+||+.+|++ ...+|++++++|+|||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~ 195 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSY 195 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCE
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcE
Confidence 688999999999876 47999999999999973
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=103.07 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=75.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-----CC-C-ceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-----VP-P-ADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-----~p-~-~D~v~~~~vlh 202 (228)
.....+|||||||+|.++..+++. ..+++++|+ +.+++.+++..++++..+|+.+. .+ + ||+|++..++|
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 345689999999999999999998 668999999 88888887768888999887551 12 3 99999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++. ..+|+++++.|+|||.
T Consensus 128 -~~~~--~~~l~~~~~~L~pgG~ 147 (227)
T 3e8s_A 128 -HQDI--IELLSAMRTLLVPGGA 147 (227)
T ss_dssp -SSCC--HHHHHHHHHTEEEEEE
T ss_pred -hhhH--HHHHHHHHHHhCCCeE
Confidence 5554 6899999999999974
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=98.45 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC-C-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ--FV-P-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~--~~-p-~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..++++ ..+++++|+ |.+++.+++ .++++++..|+.. ++ + .||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999998 789999999 888888764 3789999977755 13 3 399998763
Q ss_pred -hhcC------CChhHHHHHHHHHHHHhccCCC
Q 038208 200 -VFHG------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 -vlh~------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++. ...+....+|+++++.|||||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 130 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcE
Confidence 3322 0235567889999999999974
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=107.81 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CeEEEeCCCCC---------CCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TD-------NLKYIAGDMFQ---------FVP 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~-------rv~~~~gD~~~---------~~p 190 (228)
...+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877766654 3468999999 899988874 21 26788888722 233
Q ss_pred --CceEeeehhhhcC-CChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHG-LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~-~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|+ |++++...+|+++++.|||||.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~ 164 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGK 164 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCE
Confidence 4999999999997 4555668999999999999974
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-13 Score=105.68 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=63.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-------CCceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFV-------PPADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~-------p~~D~v~~~ 198 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+++ ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 888888875 117899999997742 349999996
Q ss_pred hhh------cCCChhHH------------------HHHHHHHHHHhccCCC
Q 038208 199 LVF------HGLGDEDG------------------LKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vl------h~~~d~~~------------------~~il~~~~~aL~pgG~ 225 (228)
..+ +.++++.. ..+++++++.|+|||.
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 443 33333322 7889999999999975
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=99.41 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=70.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CC-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVV----ANLPETDNLKYIAGDMFQF-----VP-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i----~~a~~~~rv~~~~gD~~~~-----~p-~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..++.+++++|+ |.++ +.++...++.++.+|+..+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 34667999999999999999999988779999999 6544 3343356899999998763 23 49999986
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+. .+++...+++++++.|||||.
T Consensus 134 ~~---~~~~~~~~l~~~~r~LkpgG~ 156 (210)
T 1nt2_A 134 IA---QKNQIEILKANAEFFLKEKGE 156 (210)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEE
T ss_pred cc---ChhHHHHHHHHHHHHhCCCCE
Confidence 22 224445679999999999973
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=104.43 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=73.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CceEeee-hh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ---FVP--PADAFLF-KL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~---~~p--~~D~v~~-~~ 199 (228)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999976544 38999999 888887764 4679999999865 355 3999998 55
Q ss_pred h--hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 V--FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 v--lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. .+++.......+++++++.|||||.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~ 165 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGV 165 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeE
Confidence 4 4455555667889999999999974
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-12 Score=98.76 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
... +|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++. ++
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 344 9999999999999999987 569999999 888887764 3489999999987 555 49999984 34
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++.++...+|+++++.|+|||.
T Consensus 104 ~~~~~~~~~~l~~~~~~L~pgG~ 126 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKPGGV 126 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcE
Confidence 56777789999999999999974
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-12 Score=105.63 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCeEEEeCCCCCCCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE----T---DNLKYIAGDMFQFVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----~---~rv~~~~gD~~~~~p--~~D~v~~~~ 199 (228)
+.+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ . ++++++.+|+.++++ .||+|++
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-- 185 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE--
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEE--
Confidence 556789999999999999999998 78999999999 888876653 2 589999999988655 3999998
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++. ..+|+++.+.|+|||.
T Consensus 186 ---~~~~~--~~~l~~~~~~LkpgG~ 206 (275)
T 1yb2_A 186 ---DIPDP--WNHVQKIASMMKPGSV 206 (275)
T ss_dssp ---CCSCG--GGSHHHHHHTEEEEEE
T ss_pred ---cCcCH--HHHHHHHHHHcCCCCE
Confidence 45544 4789999999999974
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=105.19 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~ 199 (228)
..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+.++ .+|+|++
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~-- 168 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVIL-- 168 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEE--
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEE--
Confidence 456789999999999999999999 89999999999 888887764 3569999999988665 3999987
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++. ..+++++.+.|+|||.
T Consensus 169 ---~~~~~--~~~l~~~~~~L~~gG~ 189 (255)
T 3mb5_A 169 ---DLPQP--ERVVEHAAKALKPGGF 189 (255)
T ss_dssp ---CSSCG--GGGHHHHHHHEEEEEE
T ss_pred ---CCCCH--HHHHHHHHHHcCCCCE
Confidence 34544 5789999999999974
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=103.21 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=77.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehh---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKL--- 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~--- 199 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++++ .||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3467999999999999999999999999999999 888887664 3589999999988653 499999983
Q ss_pred ----------hhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 200 ----------VFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 ----------vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
++++.|. +....+++++.+.|+|||.
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~ 233 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF 233 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 4444432 3457899999999999974
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=100.22 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+++.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 367999999999999999999999999999999 888876653 3459999999987433 4999997542
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+ ...+++++++.|+|||.
T Consensus 142 -~~--~~~~l~~~~~~L~~gG~ 160 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGEQGR 160 (207)
T ss_dssp -SS--HHHHHHHHTTSEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCCCcE
Confidence 22 36899999999999974
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-12 Score=106.41 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..++++ +..+++++|+.++++.+++ .++|+++.+|+.+ ++| .+|+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345789999999999999999998 6679999999657776653 4679999999988 666 4999998776
Q ss_pred hcCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
.|.+ ..+....+++.+.+.|+|||.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~ 168 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGL 168 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCCCCE
Confidence 5554 234457899999999999974
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=96.29 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=71.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p~~D~v~~~~ 199 (228)
.....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+. .+.||+|++..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 556789999999999999999998 789999999 888887664 23899999999873 34699999776
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+ + .. +++++++.|+|||.
T Consensus 131 ~~----~--~~-~l~~~~~~LkpgG~ 149 (204)
T 3njr_A 131 GG----S--QA-LYDRLWEWLAPGTR 149 (204)
T ss_dssp CC----C--HH-HHHHHHHHSCTTCE
T ss_pred cc----c--HH-HHHHHHHhcCCCcE
Confidence 44 2 23 99999999999974
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=101.30 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=68.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec--hHHHhcC---CC------CCCeEEEeCCCCCCCCC--ceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL--PHVVANL---PE------TDNLKYIAGDMFQFVPP--ADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a---~~------~~rv~~~~gD~~~~~p~--~D~v~~~ 198 (228)
....+|||||||+|.++..+++++|+.+++++|+ +.+++.| ++ ..+++++.+|+.. +|. +|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 4567999999999999999999999999999999 3454443 43 3579999999976 242 3555544
Q ss_pred hhhcCCChhH------HHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDED------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~------~~~il~~~~~aL~pgG~ 225 (228)
.+.+.|+... ...+|+++++.|||||.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~ 134 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAH 134 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcE
Confidence 4444444321 14689999999999974
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=98.54 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----CC-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL----PETDNLKYIAGDMFQF-----VP-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a----~~~~rv~~~~gD~~~~-----~p-~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+ +..++++++.+|+.++ ++ .+|+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45678999999999999999999988889999999 7777544 3357899999999762 22 499998
Q ss_pred hhcCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
|++++ +....+++++++.|+|||.
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~ 173 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGY 173 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcE
Confidence 56554 3446779999999999974
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-12 Score=105.75 Aligned_cols=92 Identities=15% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CceEeeehhhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP--PADAFLFKLVF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p--~~D~v~~~~vl 201 (228)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 889887764 4689999999866 333 49999986555
Q ss_pred cCCChhH--HHHHHHHHHHHhccCCC
Q 038208 202 HGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
+...... ...+++++++.|+|||+
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGv 195 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGL 195 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcE
Confidence 5433222 26799999999999975
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-12 Score=102.65 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~ 207 (228)
.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++++.++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 46789999999999999999987 568999999 8888877641111388999977 554 39999998866656433
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
...+|+++++.|+|||.
T Consensus 131 -~~~~l~~~~~~LkpgG~ 147 (260)
T 2avn_A 131 -KDKAFSEIRRVLVPDGL 147 (260)
T ss_dssp -HHHHHHHHHHHEEEEEE
T ss_pred -HHHHHHHHHHHcCCCeE
Confidence 57899999999999974
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=95.86 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=75.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CC--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F-VP--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~-~p--~~D~v~~ 197 (228)
..+..+|||+|||+|.++..+++++ |..+++++|+ +.+++.+++ .++++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566899999999999999999986 7789999999 888887764 2689999999866 2 32 4999998
Q ss_pred hhhhc-------CCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFH-------GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh-------~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...+. ....+....+++++.+.|+|||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 134 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGI 134 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEE
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCE
Confidence 76551 12233556799999999999974
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=93.89 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=71.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-------------------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP--GIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-F------------------- 188 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~------------------- 188 (228)
+.+..+|||||||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 35567999999999999999999998 6899999995421 24679999999977 3
Q ss_pred ------CC--CceEeeehhhhcCCC----hhH-----HHHHHHHHHHHhccCCC
Q 038208 189 ------VP--PADAFLFKLVFHGLG----DED-----GLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ------~p--~~D~v~~~~vlh~~~----d~~-----~~~il~~~~~aL~pgG~ 225 (228)
++ .||+|++...+|... +.. ...+|+++++.|+|||.
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~ 149 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGT 149 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence 34 499999988777531 221 13589999999999973
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=100.74 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 038208 133 GLGSLVDVGGGNGSFSRIISEA--FPGIKCTVLDL-PHVVANLPE---TD-------N---------------------- 177 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~~---~~-------r---------------------- 177 (228)
...+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999998 78889999999 888887763 22 2
Q ss_pred ---eE-------------EEeCCCCCCC------C--CceEeeehhhhcCCC-------hhHHHHHHHHHHHHhccCCC
Q 038208 178 ---LK-------------YIAGDMFQFV------P--PADAFLFKLVFHGLG-------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 178 ---v~-------------~~~gD~~~~~------p--~~D~v~~~~vlh~~~-------d~~~~~il~~~~~aL~pgG~ 225 (228)
++ ++.+|++++. + .||+|+++..++... .+....+++++++.|+|||.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 77 9999998854 3 499999987665543 26678999999999999974
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=95.43 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=67.7
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeee
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLF 197 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~ 197 (228)
.++. .+. ...+..+|||||||+|.++..++ .+++++|+... +++++.+|+.+ +++ .||+|++
T Consensus 57 ~~~~-~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIAR-DLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHH-HHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHH-HHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 3444 443 13456899999999999998873 67999998332 67889999987 555 3999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..++| +.+ ...+|+++++.|+|||.
T Consensus 122 ~~~l~-~~~--~~~~l~~~~~~L~~gG~ 146 (215)
T 2zfu_A 122 CLSLM-GTN--IRDFLEEANRVLKPGGL 146 (215)
T ss_dssp ESCCC-SSC--HHHHHHHHHHHEEEEEE
T ss_pred ehhcc-ccC--HHHHHHHHHHhCCCCeE
Confidence 99998 443 47899999999999974
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=102.15 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ ++| .+|+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999999987 4568999999557776653 3799999999987 566 4999998774
Q ss_pred hcCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.+ .......+|+++.+.|+|||.
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~ 166 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGS 166 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcE
Confidence 3333 233456799999999999974
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=98.20 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C--CC--Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------ETDNLKYIAGDMFQ--F--VP--PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------~~~rv~~~~gD~~~--~--~p--~~ 192 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 77776442 24689999999976 2 44 38
Q ss_pred eEeeehhhhcCCChh---H----HHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDE---D----GLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~---~----~~~il~~~~~aL~pgG~ 225 (228)
|.|++...-. |... . ...+|+++++.|+|||.
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~LkpGG~ 163 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRVGGL 163 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCCCCE
Confidence 9987654322 2110 1 13699999999999974
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=100.61 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-Cc---eEeeeh--
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP-PA---DAFLFK-- 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p-~~---D~v~~~-- 198 (228)
...+|||||||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|++++++ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 5579999999999999999999 9999999999 888887764 3479999999998654 48 999986
Q ss_pred ----------hhhcCCCh------hHHHHHHHHHH-HHhccCCC
Q 038208 199 ----------LVFHGLGD------EDGLKILKKRR-EAIASNGE 225 (228)
Q Consensus 199 ----------~vlh~~~d------~~~~~il~~~~-~aL~pgG~ 225 (228)
.+. +.+. ++...+++++. +.|+|||.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~ 244 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKI 244 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCE
Confidence 233 2221 11237899999 99999974
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-12 Score=98.03 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999876 57779999999 888877664 2349999999987544 599999988776
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ...+++++++.|+|||.
T Consensus 137 ~-----~~~~l~~~~~~L~~gG~ 154 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNEDGQ 154 (205)
T ss_dssp H-----HHHHGGGSGGGEEEEEE
T ss_pred H-----HHHHHHHHHHhcCCCCE
Confidence 4 36889999999999974
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-12 Score=100.14 Aligned_cols=90 Identities=11% Similarity=0.224 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-----CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP-----PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p-----~~D~v~~ 197 (228)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.+++ .++|+++.+|+.+..+ .||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45678999999999999999999889999999999 888887764 3589999999987322 4999986
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... .+....+++++.+.|+|||.
T Consensus 149 ~~~-----~~~~~~~l~~~~~~LkpgG~ 171 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKHQGL 171 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEEEEE
T ss_pred cCc-----HHHHHHHHHHHHHhcCCCeE
Confidence 532 33356799999999999974
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=95.34 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=72.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|..+..+ .||+|++..+
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 466789999999999999999998 678999999 888877764 3579999999987432 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++ ++++.|+|||.
T Consensus 153 ~~~~~~--------~~~~~L~pgG~ 169 (210)
T 3lbf_A 153 PPEIPT--------ALMTQLDEGGI 169 (210)
T ss_dssp CSSCCT--------HHHHTEEEEEE
T ss_pred hhhhhH--------HHHHhcccCcE
Confidence 998886 47889999963
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=100.32 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC---CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP---PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p---~~D~v 195 (228)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+. ++ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 889999999 888877664 46899999998652 22 59999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.. +.+....+|+++.+.|+|||.
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRPGTL 165 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCTTCE
T ss_pred EECC-----chHHHHHHHHHHHHhcCCCeE
Confidence 8743 344557899999999999974
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=104.68 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC--------------------------------
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TD-------------------------------- 176 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~-------------------------------- 176 (228)
+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 457899999999999999998866 68999999 888877653 11
Q ss_pred Ce-EEEeCCCCCC-C--C----CceEeeehhhhcCCCh--hHHHHHHHHHHHHhccCCC
Q 038208 177 NL-KYIAGDMFQF-V--P----PADAFLFKLVFHGLGD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 177 rv-~~~~gD~~~~-~--p----~~D~v~~~~vlh~~~d--~~~~~il~~~~~aL~pgG~ 225 (228)
++ +++.+|+.+. . + .||+|++..+||+.++ ++...+|+++++.|+|||.
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~ 193 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGF 193 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcE
Confidence 28 9999999772 1 2 3999999999995433 3568999999999999974
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=95.57 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+..+++ .||+|++..
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence 4567899999999999999999987 7789999999 888877764 3579999999966544 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++ ++.+.|+|||.
T Consensus 155 ~~~~~~~--------~~~~~L~pgG~ 172 (215)
T 2yxe_A 155 AGPKIPE--------PLIRQLKDGGK 172 (215)
T ss_dssp BBSSCCH--------HHHHTEEEEEE
T ss_pred chHHHHH--------HHHHHcCCCcE
Confidence 9998873 77899999964
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-11 Score=95.53 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--C---C--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQF--V---P--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~--~---p--~~D~v~~~~ 199 (228)
+..+|||||||+|..+..+++. +|+.+++++|+ +.+++.++. .++|+++.+|+.+. + + .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4679999999999999999998 78999999999 888887764 57899999999763 2 2 389998765
Q ss_pred hhcCCChhHHHHHHHHHHH-HhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRRE-AIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~-aL~pgG~ 225 (228)
. |. +...+|+++++ .|+|||.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~ 182 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDY 182 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCE
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCE
Confidence 4 42 34678999997 9999974
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=92.57 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=75.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-C-CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V-P-PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~-p-~~D~v~~~~ 199 (228)
.+..+|||+|||+|.++..++++ +..+++++|+ +.+++.+++ .++++++.+|+.+. + + .||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999988874 5668999999 888887764 36899999999762 3 2 499999988
Q ss_pred hhcCCChhHHHHHHHHHHH--HhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRRE--AIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~--aL~pgG~ 225 (228)
.+|. ..++...+++++.+ .|+|||.
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~pgG~ 148 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTREGTV 148 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCTTCE
T ss_pred CCCc-chhhHHHHHHHHHhcCccCCCeE
Confidence 8664 34566889999999 9999974
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=101.43 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=74.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..++++ +..+++++|+..+++.+++ .++|+++.+|+.+ ++| .+|+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345679999999999999998886 5568999999667766553 4689999999987 566 4999998866
Q ss_pred hcCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.+. .+....+++.+.+.|+|||.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~ 140 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGL 140 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeE
Confidence 55442 33346789999999999974
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-12 Score=106.34 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------------------------------C
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----T-------------------------------D 176 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~-------------------------------~ 176 (228)
+..+|||||||+|.++..+++..- .+++++|+ +.+++.+++ . .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 457899999999988776655421 26999999 888876542 0 1
Q ss_pred CeE-EEeCCCCCC--C-----CCceEeeehhhhcCC-C-hhHHHHHHHHHHHHhccCCC
Q 038208 177 NLK-YIAGDMFQF--V-----PPADAFLFKLVFHGL-G-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 177 rv~-~~~gD~~~~--~-----p~~D~v~~~~vlh~~-~-d~~~~~il~~~~~aL~pgG~ 225 (228)
+++ ++.+|+.+. + +.||+|++..+||+. + .++..++|+++++.|||||.
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~ 192 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH 192 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence 243 889999873 2 249999999999974 2 35667899999999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=89.36 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C--------CC--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-F--------VP--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~--------~p--~~D~v~~~ 198 (228)
..+..+|||||||+|.++..+++.+ |+.+++++|+..+++ ..+++++.+|+.+ + ++ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3456799999999999999999995 779999999954433 3789999999987 4 55 49999999
Q ss_pred hhhcCCChhH---------HHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDED---------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~---------~~~il~~~~~aL~pgG~ 225 (228)
.++|...+.. ...+++++.+.|+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 9888665431 15889999999999974
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=96.58 Aligned_cols=91 Identities=9% Similarity=0.091 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC--CC----CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVA----NLPETDNLKYIAGDMFQF--VP----PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~----~a~~~~rv~~~~gD~~~~--~p----~~D~v~~~ 198 (228)
+....+|||||||+|.++..+++++ |..+++++|+ |.+++ .++...+++++.+|+.++ +| .||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4456799999999999999999986 7889999999 65443 333358899999999872 22 49999984
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ..+....+++++++.|+|||.
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~ 177 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGH 177 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeE
Confidence 43 344556789999999999974
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=99.99 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC----C-CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV----P-PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~----p-~~D~v~~~ 198 (228)
.+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ ..+|+++.+|+.+ +. + .||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999999999999999 888877654 3479999999866 32 2 49999987
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+ .+ ...+++.+++.|+|||.
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~ 169 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGL 169 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCE
Confidence 63 22 46899999999999974
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-12 Score=103.50 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C------------C---------------------
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--T------------D--------------------- 176 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~------------~--------------------- 176 (228)
+..+|||||||+|.++. ++...+..+++++|+ +.+++.+++ . .
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56799999999999543 344445669999999 888875542 0 0
Q ss_pred -CeEEEeCCCCCC-------CCC--ceEeeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 177 -NLKYIAGDMFQF-------VPP--ADAFLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 177 -rv~~~~gD~~~~-------~p~--~D~v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
.++++.+|+.+. ++. ||+|++..+||+.+++ +..++|+++++.|||||.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~ 210 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 210 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 145677798762 222 9999999999985533 668999999999999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=98.77 Aligned_cols=95 Identities=9% Similarity=0.192 Sum_probs=73.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC--------CC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF--------VP- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~--------~p- 190 (228)
.....+|||||||+|.++..+++++|..+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34567999999999999999999999999999999 887776543 13699999999874 23
Q ss_pred -CceEeeehhhhcC----------------CChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHG----------------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~----------------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+++-..+. ........+++.+.+.|+|||.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~ 165 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQ 165 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCE
Confidence 4999999733321 2223357899999999999974
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=106.96 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC------CCC-
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ------FVP- 190 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~------~~p- 190 (228)
...+++ .+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .+......+.. +++
T Consensus 96 ~~~l~~-~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 96 ARDFLA-TEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHH-TTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHH-HhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 344555 454 456789999999999999999987 458999999 7888877653 33333322211 222
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++.++||++++. ..+|+++++.|||||.
T Consensus 170 ~~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~ 203 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYV--QSVLEGVDALLAPDGV 203 (416)
T ss_dssp CCEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEE
T ss_pred CCEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeE
Confidence 49999999999999865 7899999999999974
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=102.78 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C-C-C--CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ-F-V-P--PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~-~-~-p--~~D~v 195 (228)
.+..+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|+.+ . . + .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999999 888876653 4789999999976 2 1 3 49999
Q ss_pred eehhhhcCCChhHH--HHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDG--LKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~--~~il~~~~~aL~pgG~ 225 (228)
++....+.++++.. ..++++++++|+|||+
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~ 205 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGI 205 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence 99877776654433 5889999999999974
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=96.66 Aligned_cols=93 Identities=19% Similarity=0.281 Sum_probs=75.3
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--- 190 (228)
.+++ .++ ..+..+|||||||+|.++..+++..| .+++++|+ +.+++.+++ .++++++.+|+..+++
T Consensus 82 ~~~~-~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 82 IMLE-IAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHH-HHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHH-hcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 3444 444 55678999999999999999999988 89999998 888877664 3569999999855554
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..+++++++ ++.+.|+|||.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~ 184 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGK 184 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEE
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcE
Confidence 3899999999998874 57889999974
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.9e-12 Score=101.42 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=66.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCC----CCCC-----CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMF----QFVP-----PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~----~~~p-----~~D~v 195 (228)
+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988999999999 888887764 357999999953 3444 49999
Q ss_pred eehhhhcCCCh-------------hHHHHHHHHHHHHhccCC
Q 038208 196 LFKLVFHGLGD-------------EDGLKILKKRREAIASNG 224 (228)
Q Consensus 196 ~~~~vlh~~~d-------------~~~~~il~~~~~aL~pgG 224 (228)
++.-..|...+ +....+++++++.|||||
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG 186 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGG 186 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHT
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCC
Confidence 99866654331 112356788889999986
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=103.31 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=75.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..++++. ..+++++|+..+++.+++ .++|+++.+|+.+ ++| .+|+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 3567899999999999999999983 348999999766666553 4679999999987 555 49999997777
Q ss_pred cCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
|.... .....+++++.+.|+|||.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~ 164 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGV 164 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeE
Confidence 76543 3456799999999999974
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-11 Score=96.19 Aligned_cols=94 Identities=13% Similarity=0.195 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCC-CcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC--CCCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGG-NGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMF--QFVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~--~~~p--~~D~v~~~~ 199 (228)
+.+..+||||||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+. .+++ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 788999999 888887764 238999999963 3454 499999887
Q ss_pred hhcCCChhH-----------------HHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDED-----------------GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~-----------------~~~il~~~~~aL~pgG~ 225 (228)
.++..++.. ...+++++.+.|+|||.
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 174 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGK 174 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeE
Confidence 766544322 37899999999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=96.27 Aligned_cols=90 Identities=10% Similarity=0.157 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----CCce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V-----PPAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~-----p~~D 193 (228)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. + ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999998 789999999 888876653 45799999999762 1 2499
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++... .+....+++++.+.|+|||.
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~ 162 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRPGTV 162 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCTTCE
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCCCcE
Confidence 9987543 34457899999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-11 Score=102.74 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCeEEEeCCCC-CC--C--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL-------PE--------TDNLKYIAGDMF-QF--V-- 189 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------~~--------~~rv~~~~gD~~-~~--~-- 189 (228)
+....+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+|+++.+|.+ .+ +
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence 45678999999999999999999988889999999 7776655 32 268999988544 32 2
Q ss_pred --CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 --PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 --p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..||+|++.++++ . ++....|+++.+.|+|||.
T Consensus 320 ~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~ 354 (433)
T 1u2z_A 320 LIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCK 354 (433)
T ss_dssp HGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCE
T ss_pred ccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeE
Confidence 2599999887773 2 3446788999999999974
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=99.69 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----CCceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV-----PPADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~-----p~~D~v~~~ 198 (228)
....+|||||||+|..+..++..+|+.+++++|+ +.+++.+++ ..+|+++++|+.+ +. ..||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 3567999999999999999999999999999999 888877664 3569999999876 32 249999987
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+ .+ ...+++.+.+.|+|||.
T Consensus 159 a~----~~--~~~ll~~~~~~LkpgG~ 179 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEVGGA 179 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEEEEE
T ss_pred Cc----CC--HHHHHHHHHHHcCCCeE
Confidence 54 22 25789999999999973
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=97.72 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC------Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVP------PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p------~~ 192 (228)
..+..+|||||||+|..+..+++..| +.+++++|+ |.+++.+++ .++|+++.+|+.+ .++ .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34678999999999999999999875 889999999 888887764 3579999999844 222 49
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++....+.+.+. ..+++.+ +.|+|||.
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~ 165 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTV 165 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCE
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeE
Confidence 999998877766433 4677777 99999974
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=97.97 Aligned_cols=89 Identities=18% Similarity=0.289 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC----CC--
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------------TDNLKYIAGDMFQF----VP-- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------------~~rv~~~~gD~~~~----~p-- 190 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999999 777765431 25899999999763 33
Q ss_pred CceEeeehhhhcCCChhHH-----------HHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDG-----------LKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~-----------~~il~~~~~aL~pgG~ 225 (228)
.+|.|++. +++... ..+++++.+.|+|||.
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~ 168 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCE
Confidence 26777633 233211 4799999999999974
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-11 Score=96.15 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=76.6
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF-VP 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~-~p 190 (228)
.++. .++ +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 87 ~~~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 87 AMVT-LLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHH-HcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3444 444 566789999999999999999999 78899999999 888876653 26899999999873 66
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|++ ++++. ..+|+++.+.|+|||.
T Consensus 164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~ 193 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEP--WKVLEKAALALKPDRF 193 (258)
T ss_dssp TTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEE
T ss_pred CCCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCE
Confidence 3999997 34444 4789999999999964
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-11 Score=101.30 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC--CceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF-VP--PADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~-~p--~~D~v~~~~vlh~ 203 (228)
+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+. .+ .||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 569999999 888887764 33599999999883 33 4999999999987
Q ss_pred ---CChhHHHHHHHHHHHHhccCCC
Q 038208 204 ---LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ---~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...+....+++++++.|+|||.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~ 335 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGV 335 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcE
Confidence 3456678999999999999974
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=98.70 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC--CCC---CceEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ--FVP---PADAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~--~~p---~~D~v~~~~vlh~ 203 (228)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|+++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~----- 118 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR----- 118 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----
Confidence 356789999999999999999998 579999999 888887765 6789999999965 444 39999987
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. +...+|+++++.|+|||.
T Consensus 119 -~--~~~~~l~~~~~~LkpgG~ 137 (226)
T 3m33_A 119 -R--GPTSVILRLPELAAPDAH 137 (226)
T ss_dssp -S--CCSGGGGGHHHHEEEEEE
T ss_pred -C--CHHHHHHHHHHHcCCCcE
Confidence 1 225789999999999974
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-11 Score=92.82 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=73.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV---PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~---p~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+++ +.+|+|++..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence 4567899999999999999999987 78999999 888877654 268999999987633 3599999988
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++ ..+++++.+.|+|||.
T Consensus 109 ~~~~~-----~~~l~~~~~~l~~gG~ 129 (192)
T 1l3i_A 109 SGGEL-----QEILRIIKDKLKPGGR 129 (192)
T ss_dssp CTTCH-----HHHHHHHHHTEEEEEE
T ss_pred chHHH-----HHHHHHHHHhcCCCcE
Confidence 77643 6789999999999974
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=93.88 Aligned_cols=90 Identities=10% Similarity=0.188 Sum_probs=75.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--C-CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V--P-PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~--p-~~D~v~ 196 (228)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. . + .||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34678999999999999999999999999999999 888877664 35899999999762 2 2 499999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+....+ ....+|+++.+.|+|||.
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~ 155 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGL 155 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEE
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeE
Confidence 877654 346889999999999974
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-11 Score=91.88 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-------CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-------PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-------~~D~v~~~~ 199 (228)
+..+|||+|||+|.++..++++.++ ++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998776 999999 888887764 2289999999976221 499999998
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++| ...++..+.+.+ ++.|+|||.
T Consensus 119 ~~~-~~~~~~~~~~~~-~~~L~~gG~ 142 (171)
T 1ws6_A 119 PYA-MDLAALFGELLA-SGLVEAGGL 142 (171)
T ss_dssp CTT-SCTTHHHHHHHH-HTCEEEEEE
T ss_pred CCc-hhHHHHHHHHHh-hcccCCCcE
Confidence 877 222333333333 499999974
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-11 Score=93.65 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=71.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC---CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQFVP---PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~~p---~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHH
Confidence 4567899999999999999999986 78999999 888877664 2289999999987433 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++ ++.+.|+|||.
T Consensus 146 ~~~~--------~~~~~L~pgG~ 160 (231)
T 1vbf_A 146 TLLC--------KPYEQLKEGGI 160 (231)
T ss_dssp SCCH--------HHHHTEEEEEE
T ss_pred HHHH--------HHHHHcCCCcE
Confidence 8874 57889999974
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=91.39 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=70.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANL----PETDNLKYIAGDMFQF-----VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a----~~~~rv~~~~gD~~~~-----~p-~~D~v~~~ 198 (228)
+.+..+|||+|||+|.++..++++. |..+++++|+ +.+++.+ +..++++++.+|+.++ .+ .+|+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3456799999999999999999985 6789999999 7555443 3357899999999772 23 49999965
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. .++....+++++++.|+|||.
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~ 173 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGY 173 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCE
Confidence 43 233345569999999999974
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-11 Score=95.00 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34678999999999999999999998 789999999 888877654 46799999998652 1 359
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++.. +.+....+++++.+.|+|||.
T Consensus 142 D~v~~~~-----~~~~~~~~l~~~~~~L~pgG~ 169 (225)
T 3tr6_A 142 DLIYIDA-----DKANTDLYYEESLKLLREGGL 169 (225)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEEEEE
T ss_pred cEEEECC-----CHHHHHHHHHHHHHhcCCCcE
Confidence 9998543 344557899999999999974
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.6e-12 Score=101.38 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=81.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-C-CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFV-P-PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~-p-~~D~v~~~~vlh~ 203 (228)
..+.+|||||||.|-++..+....|+.+++++|+ +.+++.+++ ..+.++...|+.... + .+|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888887764 566899999998843 4 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+++....+ ++.++|+|+|+
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~v 231 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNI 231 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCE
Confidence 9988777777 99999999975
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=95.20 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=71.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d 206 (228)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999998899999999 888887765 5789999999976 554 49999986553
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
..++++++.|+|||.
T Consensus 159 ----~~l~~~~~~L~pgG~ 173 (269)
T 1p91_A 159 ----CKAEELARVVKPGGW 173 (269)
T ss_dssp ----CCHHHHHHHEEEEEE
T ss_pred ----hhHHHHHHhcCCCcE
Confidence 248999999999974
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=98.26 Aligned_cols=87 Identities=14% Similarity=0.272 Sum_probs=72.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++..
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence 45678999999999999999999987 488999999 888877664 356999999998732 2499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|+.+ +++.+.|||||.
T Consensus 153 ~~~~~~--------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 153 GVDEVP--------ETWFTQLKEGGR 170 (317)
T ss_dssp BBSCCC--------HHHHHHEEEEEE
T ss_pred CHHHHH--------HHHHHhcCCCcE
Confidence 999887 467889999974
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-11 Score=96.75 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--F-V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~-~------p~~ 192 (228)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + + ..|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 34678999999999999999999986 789999999 788877764 4689999999976 2 2 359
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++... .+....+++++.+.|+|||.
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~ 165 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTPKGL 165 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEEEEE
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCCCeE
Confidence 99987543 34456789999999999974
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=93.58 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=75.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
.++..+|+|||||+|.++..+++.+|..+++++|+ |..++.|++ .++|++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34567999999999999999999999999999999 888887764 4689999999998665 399998765
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+ .-+....||..+.+.|+|+|
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~~~ 113 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLANVE 113 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTTCC
T ss_pred C----ChHHHHHHHHHHHHHhCCCC
Confidence 4 23446789999999999874
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-11 Score=95.08 Aligned_cols=86 Identities=7% Similarity=0.098 Sum_probs=70.1
Q ss_pred CeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCC---CC-C-CceEeeehh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQ---FV-P-PADAFLFKL 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~---~~-p-~~D~v~~~~ 199 (228)
.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ . ++|+++.+|..+ .+ + .||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999985 789999999 888877764 3 689999999866 23 2 499998754
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ......+++++.+.|+|||.
T Consensus 138 ~-----~~~~~~~l~~~~~~LkpGG~ 158 (221)
T 3dr5_A 138 S-----PMDLKALVDAAWPLLRRGGA 158 (221)
T ss_dssp C-----TTTHHHHHHHHHHHEEEEEE
T ss_pred c-----HHHHHHHHHHHHHHcCCCcE
Confidence 2 23346789999999999974
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=94.92 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=73.4
Q ss_pred cc-CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--CceEee
Q 038208 131 FE-GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP--PADAFL 196 (228)
Q Consensus 131 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p--~~D~v~ 196 (228)
.. +..+|||||||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999999776 9999999 888877664 45899999999872 33 499999
Q ss_pred ehhhhcCC------------------ChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGL------------------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~------------------~d~~~~~il~~~~~aL~pgG~ 225 (228)
++-.++.. .......+++.+.+.|+|||.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~ 171 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcE
Confidence 96443322 113346799999999999974
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-11 Score=94.44 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=73.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|+.+. + ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999987 789999999 888877653 36899999998652 2 359
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++.. +......+++++.+.|+|||.
T Consensus 147 D~v~~d~-----~~~~~~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 147 DVAVVDA-----DKENCSAYYERCLQLLRPGGI 174 (229)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEE
T ss_pred cEEEECC-----CHHHHHHHHHHHHHHcCCCeE
Confidence 9998843 234457889999999999974
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=97.06 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=74.5
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p 190 (228)
..+++ .++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~i~~-~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 18 NSIID-KAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHH-HTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHH-hcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 34455 444 4567899999999999999999985 48999999 788876653 2589999999988 677
Q ss_pred CceEeeehhhhcCCChhHHHHHHH--------------HH--HHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILK--------------KR--REAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~--------------~~--~~aL~pgG~ 225 (228)
.+|+|+++... +|..+....+|. ++ +.+++|||.
T Consensus 93 ~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~ 142 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDK 142 (285)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCT
T ss_pred hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCc
Confidence 89998885443 465555555553 23 368899974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=89.08 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++ .++++++.+|+.++++ .+|+|++..+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-
Confidence 45678999999999999999998 7889999999 888877664 2689999999987555 5999999888
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++++++. |||.
T Consensus 110 -----~~~~~~l~~~~~~--~gG~ 126 (183)
T 2yxd_A 110 -----KNIEKIIEILDKK--KINH 126 (183)
T ss_dssp -----SCHHHHHHHHHHT--TCCE
T ss_pred -----ccHHHHHHHHhhC--CCCE
Confidence 2336788888888 8863
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=95.88 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=76.5
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p- 190 (228)
.++. .++ +....+|||+|||+|.++..++++ .|..+++++|+ +.+++.+++ .++++++.+|+.+.++
T Consensus 103 ~i~~-~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 103 FIAM-MLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHH-HhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 3444 444 556789999999999999999999 68899999999 888877664 2689999999987655
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++ +.++. ..+|+++.+.|+|||.
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~ 208 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKGGGR 208 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEE
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCCCCE
Confidence 4999987 34443 4789999999999974
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-11 Score=96.16 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~ 203 (228)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+.++...|... +.| .+|++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999888 8999999999 888887764 5778999999987 555 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+++....+ ++.++|+|+|+
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~v 201 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRM 201 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEE
T ss_pred hhhhchhhHH-HHHHHhcCCCE
Confidence 9887766666 99999999865
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-11 Score=98.92 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
.+..+|||||||+|.++.++++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4578999999999999999998877889999999 888876653 46999999998762 22 499999
Q ss_pred ehhhhcCCChhH--HHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
+....+..+.+. ...+++++++.|+|||+
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~ 184 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGI 184 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 865444333211 25789999999999974
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-11 Score=98.68 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=74.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
.+..+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888899999999 888876543 36899999998762 23 499999
Q ss_pred ehhhhcCCChhHH--HHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDG--LKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~--~~il~~~~~aL~pgG~ 225 (228)
+....+..+.+.. ..+++++++.|+|||+
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~ 187 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGY 187 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 8654443333322 6899999999999974
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-11 Score=92.58 Aligned_cols=90 Identities=8% Similarity=0.081 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC-CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP-PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p-~~D~v~~~~ 199 (228)
.+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++ .++++++.+|+.+. .+ .||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45679999999999999999987 6679999999 888887664 25799999999762 22 499999876
Q ss_pred hhcCCChhHHHHHHHHHH--HHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRR--EAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~--~aL~pgG~ 225 (228)
.+|. .....+++.+. +.|+|||.
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~gG~ 133 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSEQVM 133 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCc---chHHHHHHHHHhCCCcCCCcE
Confidence 6542 23355666666 88999974
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=92.57 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCC--CC----CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLP----ETDNLKYIAGDMFQF--VP----PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----~~~rv~~~~gD~~~~--~p----~~D~v~~~ 198 (228)
+.+..+|||||||+|.++..+++. .|+-+++++|+ |.+++.++ +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 567899999999999999999997 49999999999 88886654 367899999998763 22 38887643
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++. ++...+++++++.|||||.
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~ 177 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGY 177 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEE
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCE
Confidence 2222 3446889999999999974
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-11 Score=94.48 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--FV-PPADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~~-p~~D~v~~~~ 199 (228)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 4678999999999999999999988 789999999 888887764 3579999999865 22 2399998763
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ......+++++++.|+|||.
T Consensus 135 ~-----~~~~~~~l~~~~~~LkpgG~ 155 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAKNAL 155 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEEEEE
T ss_pred C-----hhhhHHHHHHHHHhcCCCeE
Confidence 2 23447899999999999974
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-11 Score=98.69 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
...+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+ .||+|++..++|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 67899999999999999999974 88999999 888887764 2589999999987323 599999999998
Q ss_pred CCChhHHHHHHHHHHHHhccCC
Q 038208 203 GLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG 224 (228)
...+.. ..+.++++.|+|||
T Consensus 156 ~~~~~~--~~~~~~~~~L~pgG 175 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSPDG 175 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSSCH
T ss_pred Ccchhh--hHHHHHHhhcCCcc
Confidence 766543 25667778888885
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=93.98 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------C-C
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--F-V------P-P 191 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~-~------p-~ 191 (228)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + + + .
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999988 789999999 888877653 3689999999865 2 2 2 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++... ......+++++.+.|+|||.
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~ 185 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKVGGV 185 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCTTCC
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCCCeE
Confidence 999987532 23457899999999999975
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=89.70 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=69.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC------C-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV------P-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~------p-~~D~v~ 196 (228)
....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+.. + .||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999999888 46679999999 888887764 258999999997621 2 499999
Q ss_pred ehhhhcCCChhHHHHHHHHH--HHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKR--REAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~--~~aL~pgG~ 225 (228)
+...+|....+ .+++.+ .+.|+|||.
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~gG~ 149 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTNEAV 149 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEEEEE
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCCCCE
Confidence 98876633333 445555 778999974
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-10 Score=93.72 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=66.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE--TD------NLKYI--AGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~--~~------rv~~~--~gD~~~-~~p~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..++++ .+++++|+..++..+++ .. +++++ .+|+.+ +-..||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 345679999999999999999887 68999999445443332 12 68999 999987 322499999876
Q ss_pred hhcCCCh---h-H-HHHHHHHHHHHhccCC
Q 038208 200 VFHGLGD---E-D-GLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d---~-~-~~~il~~~~~aL~pgG 224 (228)
. +..++ + . ...+|+.+.+.|+|||
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 177 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNP 177 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence 6 43322 1 1 2348999999999997
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=89.19 Aligned_cols=89 Identities=13% Similarity=0.305 Sum_probs=67.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC--------------CCceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFV--------------PPADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~--------------p~~D~v~ 196 (228)
+.+..+|||||||+|.++..++++ ..+++++|+.++ ...++++++.+|+.+.. ..+|+|+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 456789999999999999999998 789999999432 22468999999998731 3699999
Q ss_pred ehhhhcC---C------ChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHG---L------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~---~------~d~~~~~il~~~~~aL~pgG~ 225 (228)
+...... + ..+.+..+|+.+.+.|+|||.
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~ 134 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGN 134 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence 8542211 1 112346789999999999974
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=97.05 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=71.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCeEEEeCCCCCCC--C-C
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP----------------ETDNLKYIAGDMFQFV--P-P 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------------~~~rv~~~~gD~~~~~--p-~ 191 (228)
....+|||||||+|..+..+++. |..+++++|+ |.+++.++ ..+|++++.+|..+.+ + .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 88877543 2468999999986521 3 4
Q ss_pred ceEeeehhhhcCCChhH--HHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
||+|++....+..+.+. ...+++++++.|+|||+
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~ 188 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 99999866544322222 26789999999999974
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-11 Score=101.57 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCCeEEEecCC------CcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--------CceEe
Q 038208 133 GLGSLVDVGGG------NGSFSRIISEA-FPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--------PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--------~~D~v 195 (228)
+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ..++|+++.+|+.+ +++ .||+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 56899999999 66667777765 59999999999 66532 35799999999987 432 49999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++. ..|++. +..+.|+++++.|||||.
T Consensus 293 isd-gsH~~~--d~~~aL~el~rvLKPGGv 319 (419)
T 3sso_A 293 IDD-GSHINA--HVRTSFAALFPHVRPGGL 319 (419)
T ss_dssp EEC-SCCCHH--HHHHHHHHHGGGEEEEEE
T ss_pred EEC-Ccccch--hHHHHHHHHHHhcCCCeE
Confidence 876 456554 447899999999999974
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=99.35 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC--CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP--PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D~v 195 (228)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4578999999999999999999888899999999 888877653 3689999999865 233 49999
Q ss_pred eehhhhcCCChhH--HHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
++....+..+.+. ...+++++++.|+|||+
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~ 230 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGV 230 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcE
Confidence 9854422211221 36899999999999974
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=94.44 Aligned_cols=90 Identities=21% Similarity=0.152 Sum_probs=66.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE--TD------NLKYI--AGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~--~~------rv~~~--~gD~~~-~~p~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..++++ .+++++|+..++..+++ .. +++++ .+|+.+ +-..||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 345679999999999999999987 58999999445443332 12 78999 999976 322499999887
Q ss_pred hhcCCCh----hH-HHHHHHHHHHHhccCC
Q 038208 200 VFHGLGD----ED-GLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d----~~-~~~il~~~~~aL~pgG 224 (228)
. +..+. .. ...+|+.+.+.|+|||
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 185 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQ 185 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence 6 43322 11 2348999999999997
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=93.12 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=73.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V--------- 189 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~--------- 189 (228)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++ .++++++.+|+.+. +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999988 689999999 888877654 24699999998652 2
Q ss_pred --------CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 --------PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 --------p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..||+|++... .+....+++++.+.|+|||.
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~ 176 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGL 176 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEE
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeE
Confidence 34999987643 34456889999999999974
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-11 Score=92.63 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCeEEEeCCCCCC---C--CC-ceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------T--DNLKYIAGDMFQF---V--PP-ADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~--~rv~~~~gD~~~~---~--p~-~D~v~~ 197 (228)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ . ++++++.+|+.+. . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999999887743 58999999 888887764 2 6899999998762 1 25 999999
Q ss_pred hhhhcCCChhHHHHHHHHH--HHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKR--REAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~--~~aL~pgG~ 225 (228)
...+| . .....+++.+ .+.|+|||.
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~ 158 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNAL 158 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcE
Confidence 88765 3 3346778888 456999974
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=94.29 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++..+ +++++|+ |.+++.+++ .-.+++..+|+.+.++ .||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999998766 9999999 888877664 1128999999877543 499999865443
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
....+++++++.|+|||.
T Consensus 196 -----~~~~~l~~~~~~LkpgG~ 213 (254)
T 2nxc_A 196 -----LHAALAPRYREALVPGGR 213 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEE
T ss_pred -----HHHHHHHHHHHHcCCCCE
Confidence 347899999999999974
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-11 Score=99.56 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=73.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
.+..+|||||||+|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4568999999999999999999878899999999 888876542 36899999998762 23 499999
Q ss_pred ehhhhcCCChhHH--HHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDG--LKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~--~~il~~~~~aL~pgG~ 225 (228)
+...-+..+.+.. ..+++++++.|+|||.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~ 225 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGY 225 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 8643222122221 6899999999999974
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-11 Score=98.78 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=71.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC--C-C-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF--V-P-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~--~-p-~~D~v~ 196 (228)
.+..+|||||||+|..+..++++.|..+++++|+ +.+++.+++ .+|++++.+|..+. . + .||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4678999999999999999999888899999999 888876653 46899999998652 2 2 499999
Q ss_pred ehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
+....+..+.+ ....+++++++.|+|||+
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~ 204 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGV 204 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeE
Confidence 86554432221 235789999999999974
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=95.74 Aligned_cols=88 Identities=20% Similarity=0.122 Sum_probs=71.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C-CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV-P-PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~-p-~~D~v~~~~v 200 (228)
..+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++ .++++++.+|+.+.. + .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 345789999999999999999999877 8999999 888877653 456999999998843 3 4999988432
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.....+++++.+.|+|||.
T Consensus 202 ------~~~~~~l~~~~~~LkpgG~ 220 (278)
T 2frn_A 202 ------VRTHEFIPKALSIAKDGAI 220 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEE
T ss_pred ------hhHHHHHHHHHHHCCCCeE
Confidence 2226789999999999974
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.8e-11 Score=99.21 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
.+..+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999888899999999 888876542 36899999998762 12 499999
Q ss_pred ehhhhcCCChhHH--HHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDG--LKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~--~~il~~~~~aL~pgG~ 225 (228)
+...-+..+++.. ..+++++++.|+|||+
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~ 217 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGI 217 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeE
Confidence 8554332222221 6899999999999974
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-11 Score=98.81 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC---CC-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQF---VP-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~---~p-~~D~v 195 (228)
....+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999888889999999 888876543 36899999999762 23 49999
Q ss_pred eehhhhcC---CChhH--HHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHG---LGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~---~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
++....|. -+.+. ...+++++++.|+|||+
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~ 190 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGV 190 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcE
Confidence 99776654 11111 36889999999999974
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=96.05 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=75.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+.+..+|||+|||+|.++.+++... |+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .+|+|+++-
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 5667899999999999999999988 8999999999 888887764 2389999999987 333 489999865
Q ss_pred hhcCCCh--h----HHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGD--E----DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d--~----~~~~il~~~~~aL~pgG~ 225 (228)
..+.... . .-..+++++.+.|+|||.
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~ 312 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGR 312 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCTTCE
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCCCcE
Confidence 5443211 1 126789999999999974
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=92.28 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=73.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------C-C
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--F-V------P-P 191 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~-~------p-~ 191 (228)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + + + .
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 45678999999999999999999988 789999999 888877653 3589999999865 2 2 2 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++.. +......+++++.+.|+|||.
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~pGG~ 176 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKVGGI 176 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEEEEE
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCCCeE
Confidence 99998742 334567899999999999974
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-10 Score=86.97 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=68.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCeEEE-eCCCCC-C--------CC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG---------IKCTVLDLPHVVANLPETDNLKYI-AGDMFQ-F--------VP- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~Dlp~~i~~a~~~~rv~~~-~gD~~~-~--------~p- 190 (228)
+.+..+|||||||+|.++..++++++. .+++++|+.++. ..++++++ .+|+.+ + ++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999865 799999995421 14679999 999876 2 23
Q ss_pred -CceEeeehhhhcC---C-ChhH-----HHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHG---L-GDED-----GLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~---~-~d~~-----~~~il~~~~~aL~pgG~ 225 (228)
.||+|++...+|. | .+.. ...+++++++.|+|||.
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 140 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGT 140 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 4999998655442 1 2221 14789999999999974
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.1e-10 Score=89.36 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=68.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVV----ANLPETDNLKYIAGDMFQF-----VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i----~~a~~~~rv~~~~gD~~~~-----~p-~~D~v~~~ 198 (228)
+.+..+|||||||+|.++..+++. .|+.+++++|+ |.++ +.+++..++.++.+|...+ ++ .+|+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 456789999999999999999987 47889999999 7654 3333357899999999763 12 49999876
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... +++...+++.+.+.|||||.
T Consensus 154 ~a~----~~~~~il~~~~~~~LkpGG~ 176 (232)
T 3id6_C 154 IAQ----PDQTDIAIYNAKFFLKVNGD 176 (232)
T ss_dssp CCC----TTHHHHHHHHHHHHEEEEEE
T ss_pred CCC----hhHHHHHHHHHHHhCCCCeE
Confidence 433 23334455667779999974
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-10 Score=93.50 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=73.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CC-CceEeeeh-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F-VP-PADAFLFK- 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~-~p-~~D~v~~~- 198 (228)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45678999999999999999999975 589999999 788877654 3579999999977 3 23 49999973
Q ss_pred -----hhhcC-------CChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 -----LVFHG-------LGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 -----~vlh~-------~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.+++. |+.++ ...+|+++.+.|||||.
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~ 241 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGI 241 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 23332 33322 25899999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-10 Score=96.54 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~ 203 (228)
+.++|||||||+|.++...+++. ..+++++|...+++.|++ .++|+++.+|+.+ ++|+ +|+|++-+.-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999988777753 357999998656665553 6889999999987 6774 999987555444
Q ss_pred CChh-HHHHHHHHHHHHhccCCC
Q 038208 204 LGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
...+ ....++....+.|+|||.
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~ 184 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGL 184 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEE
T ss_pred ccccchhhhHHHHHHhhCCCCce
Confidence 3323 456778888899999974
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=89.24 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CCC--CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ--FVP--PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~--~~p--~~D~v~~~~vl 201 (228)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999999888753 48999999 888887764 2589999999876 332 49999988775
Q ss_pred cCCChhHHHHHHHHHHHH--hccCCC
Q 038208 202 HGLGDEDGLKILKKRREA--IASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~a--L~pgG~ 225 (228)
| +. ....+++.+.+. |+|||.
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~ 155 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEAL 155 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEE
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcE
Confidence 5 32 235677777764 999974
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-10 Score=90.17 Aligned_cols=90 Identities=9% Similarity=-0.047 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
..+..+|+|||||+|.++..+++..|..+++++|+ |..++.|++ .++|++..+|.++.++ .+|+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35668999999999999999999999999999999 888887764 5689999999998543 499998765
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+.- +....||....+.|+++|
T Consensus 99 mGg----~lI~~IL~~~~~~l~~~~ 119 (230)
T 3lec_A 99 MGG----RLIADILNNDIDKLQHVK 119 (230)
T ss_dssp ECH----HHHHHHHHHTGGGGTTCC
T ss_pred Cch----HHHHHHHHHHHHHhCcCC
Confidence 442 455778888888888774
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=87.30 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=72.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-----PGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFV---- 189 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~---- 189 (228)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4556899999999999999999986 6789999999 888877653 258999999998743
Q ss_pred C---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 P---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ .||+|++...+|++ ++++.+.|+|||.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~ 188 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGK 188 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcE
Confidence 2 49999999998864 4778899999974
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=93.98 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCeEEEeC-CCCC-CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-----PHVVANLPE----TDNLKYIAG-DMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~~----~~rv~~~~g-D~~~-~~p~~D~v~~~~ 199 (228)
+.+..+|||||||+|.++..++++ .+++++|+ +..++.+.. .++|+++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 345679999999999999999987 47999998 544433221 267999999 9987 333599999876
Q ss_pred hhc--CC-ChhH-HHHHHHHHHHHhccCCC
Q 038208 200 VFH--GL-GDED-GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh--~~-~d~~-~~~il~~~~~aL~pgG~ 225 (228)
.++ ++ .+.. ...+|+.+++.|+|||.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~ 186 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQ 186 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCE
Confidence 653 12 2222 23689999999999973
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-10 Score=94.47 Aligned_cols=101 Identities=15% Similarity=0.307 Sum_probs=72.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~ 191 (228)
..+++ .+. .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 32 ~~i~~-~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 32 DKIIY-AAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHH-HHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHH-hcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 44445 444 456789999999999999999987 468999999 888876653 3689999999987 5667
Q ss_pred ceEeeehhhhcCCChhHHHHHH---------------HHHHHHhccCCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKIL---------------KKRREAIASNGER 226 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il---------------~~~~~aL~pgG~~ 226 (228)
+|+|+++-. ++|..+....+| ..+.+.++|+|..
T Consensus 107 ~D~Vv~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~ 155 (299)
T 2h1r_A 107 FDVCTANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDS 155 (299)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTST
T ss_pred CCEEEEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCc
Confidence 999988544 457777666776 3466788888753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-10 Score=92.12 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVP--PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p--~~D~v~ 196 (228)
.....+|||||||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+|+|+
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~ 176 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV 176 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEE
Confidence 556789999999999999999996 58899999999 888876653 2589999999987 444 499999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ +.++. ..+|+++.+.|+|||.
T Consensus 177 ~-----~~~~~--~~~l~~~~~~L~pgG~ 198 (280)
T 1i9g_A 177 L-----DMLAP--WEVLDAVSRLLVAGGV 198 (280)
T ss_dssp E-----ESSCG--GGGHHHHHHHEEEEEE
T ss_pred E-----CCcCH--HHHHHHHHHhCCCCCE
Confidence 7 23333 3689999999999964
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-10 Score=87.19 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=67.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHH
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDG 209 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~ 209 (228)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++...+|++++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999987 5557999999 888887765 33899999999772135999999999998876555
Q ss_pred HHHHHHHHHHh
Q 038208 210 LKILKKRREAI 220 (228)
Q Consensus 210 ~~il~~~~~aL 220 (228)
..+++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 67888888877
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=90.68 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP------GIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p-- 190 (228)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ .++++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 34567999999999999999999765 368999999 888877664 2589999999987544
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++...+|+++ +++.+.|+|||.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~ 189 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGR 189 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCE
Confidence 499999999998765 678899999964
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-10 Score=96.15 Aligned_cols=94 Identities=12% Similarity=0.148 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
....+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888899999999 888876553 36899999998652 22 499999
Q ss_pred ehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
+...-+..... ....+++++++.|+|||+
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~ 200 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGV 200 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcE
Confidence 74332201111 126889999999999974
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=86.98 Aligned_cols=86 Identities=14% Similarity=0.242 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV-P--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~-p--~~D~v~~~~ 199 (228)
.....+|||+|||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+.. + .||+|++
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-- 164 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-- 164 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE--
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE--
Confidence 456789999999999999999998 779999998 888877654 278999999998855 4 4999987
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.++. ..+++++.+.|+|||.
T Consensus 165 ---~~~~~--~~~l~~~~~~L~~gG~ 185 (248)
T 2yvl_A 165 ---DVREP--WHYLEKVHKSLMEGAP 185 (248)
T ss_dssp ---CSSCG--GGGHHHHHHHBCTTCE
T ss_pred ---CCcCH--HHHHHHHHHHcCCCCE
Confidence 23333 4679999999999974
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=91.67 Aligned_cols=85 Identities=7% Similarity=0.049 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
+++.+|||||||+|..+.++++. + .+++++|+ |.+++.+++ .+|++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 45689999999999999999998 7 89999999 899988875 258999999997733459999975
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+++. .+++++++.|+|||+
T Consensus 147 ---~~dp~--~~~~~~~~~L~pgG~ 166 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKEDGV 166 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCCCcE
Confidence 33442 489999999999974
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.6e-10 Score=89.97 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=73.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--C-ceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--P-ADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~-~D~v~~~~ 199 (228)
..+..+|+|||||+|.++..+++..|..+++++|+ |..++.|++ .++|++..+|.++.++ . ||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 45668999999999999999999999999999999 888887764 4689999999998544 3 99998754
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+. -+....||....+.|+++|
T Consensus 99 mG----g~lI~~IL~~~~~~L~~~~ 119 (244)
T 3gnl_A 99 MG----GTLIRTILEEGAAKLAGVT 119 (244)
T ss_dssp EC----HHHHHHHHHHTGGGGTTCC
T ss_pred Cc----hHHHHHHHHHHHHHhCCCC
Confidence 43 2556778888888887763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-10 Score=103.58 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=75.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-C-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FV-P-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~-p-~~D~v~~~ 198 (228)
+.++.+|||||||.|.++..+++. +.+++++|+ +..|+.|+. ..+|++.++|..+ +. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 456779999999999999999998 678999999 888887663 2469999999865 23 3 49999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|||.+|++...-+.++.+.|+++|.
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~~~~ 168 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLADVTQ 168 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred cchhcCCCHHHHHHHHHHHHHhccccc
Confidence 999999988766666777778877753
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=93.12 Aligned_cols=89 Identities=21% Similarity=0.181 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-CC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF-VP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~-~p-~~D~v~~~~vl 201 (228)
+.+..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+.+. .+ .+|+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999998889999999 888887764 35799999999874 22 49999886543
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
....+++++.+.|+|||.
T Consensus 197 ------~~~~~l~~~~~~LkpgG~ 214 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGV 214 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCE
Confidence 345689999999999974
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=87.23 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---CCceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFV---PPADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~---p~~D~ 194 (228)
..+..+|||||||+|..+..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999985 6789999999 888877653 258999999997632 24999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++...++++. +++++.|+|||.
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~ 177 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGR 177 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEE
T ss_pred EEECCchHHHH--------HHHHHhcCCCcE
Confidence 99998887654 578899999974
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-10 Score=90.90 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC------CCce
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FV------PPAD 193 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~------p~~D 193 (228)
.+..+|||||||+|..+..+++..| +.+++++|+ |..++.+++ .++++++.+|+.+ .+ ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4578999999999999999999987 789999999 888877664 3579999999754 12 3599
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++... .+....+++++.+.|+|||.
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~ 177 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGL 177 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEE
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeE
Confidence 9987543 34457899999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=92.74 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=72.6
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEEE
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------------TDNLKYI 181 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~-----------------~~rv~~~ 181 (228)
.++. .++ .....+|||||||+|.++..+++. .|+.+++++|+ |.+++.+++ .++++++
T Consensus 96 ~~l~-~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 96 MILS-MMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHH-HHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHH-hcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 3444 444 566789999999999999999998 58899999999 888776653 2689999
Q ss_pred eCCCCCC---CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 182 AGDMFQF---VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 182 ~gD~~~~---~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+.+. ++ .||+|++.. ++. ..+++++++.|+|||.
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~LkpgG~ 214 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKHGGV 214 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEEEEE
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCCCcE
Confidence 9999873 34 399999743 222 2378999999999974
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=88.16 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCeEEEeCCCCC---CC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL--PHVVANLPE------------T----DNLKYIAGDMFQ---FV- 189 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~~------------~----~rv~~~~gD~~~---~~- 189 (228)
....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++..|..+ ++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888863 458999999 577665432 1 478888666543 12
Q ss_pred -----CCceEeeehhhhcCCChhHHHHHHHHHHHHhc---c--CC
Q 038208 190 -----PPADAFLFKLVFHGLGDEDGLKILKKRREAIA---S--NG 224 (228)
Q Consensus 190 -----p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~---p--gG 224 (228)
..||+|++..++|+.++ ...+++.+.+.|+ | ||
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG 199 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTA 199 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTC
T ss_pred hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCC
Confidence 24999999999987544 4789999999999 9 87
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=89.78 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----C-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV-----P-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~-----p-~~D~v 195 (228)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999999877 89999999 777776553 3589999999976 22 3 49999
Q ss_pred eeh------hhhcC---CCh-------hHHHHHHHHHHHHhccCCC
Q 038208 196 LFK------LVFHG---LGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~------~vlh~---~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
++. .+++. |+. +...++|+++.+.|||||.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 206 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGE 206 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 876 22221 222 2237899999999999974
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=89.17 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeEEEe-CCCCC----CCC--CceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN-LPETDNLKYIA-GDMFQ----FVP--PADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~-a~~~~rv~~~~-gD~~~----~~p--~~D~v~~~~vlh~ 203 (228)
...+|||||||+|.++..++++ +..+++++|+ +.+++. ++..+|+.... .|+.. .+| .||++++..++|+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 4579999999999999999887 5568999999 777766 33356665543 34422 234 3899998888775
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ..+|+++++.|+|||.
T Consensus 164 l-----~~vL~e~~rvLkpGG~ 180 (291)
T 3hp7_A 164 L-----NLILPALAKILVDGGQ 180 (291)
T ss_dssp G-----GGTHHHHHHHSCTTCE
T ss_pred H-----HHHHHHHHHHcCcCCE
Confidence 4 5689999999999973
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-10 Score=89.29 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=55.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEE--------Ee-CCCCCCCCCceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKY--------IA-GDMFQFVPPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~--------~~-gD~~~~~p~~D~v~~~~vl 201 (228)
...+|||||||+|.++..++++ ...+++++|+ +.+++.+++ ..++.. +. .|+..+. +|.+.+-.++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~D~v~ 113 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR--PSFTSIDVSF 113 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC--CSEEEECCSS
T ss_pred CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC--CCEEEEEEEh
Confidence 4569999999999999999988 3348999999 777766432 333332 22 2222211 2333332233
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+ ..+|+++++.|||||.
T Consensus 114 ~~l-----~~~l~~i~rvLkpgG~ 132 (232)
T 3opn_A 114 ISL-----DLILPPLYEILEKNGE 132 (232)
T ss_dssp SCG-----GGTHHHHHHHSCTTCE
T ss_pred hhH-----HHHHHHHHHhccCCCE
Confidence 222 5789999999999974
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-09 Score=84.89 Aligned_cols=92 Identities=14% Similarity=0.264 Sum_probs=64.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-ceEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~ 203 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .++.++.+..++
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~vv~nlPy~ 105 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIPYN 105 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEECCGG
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeEEEEeCCcc
Confidence 4567899999999999999999986 78999999 788876653 3689999999988 5652 333444444444
Q ss_pred CChhHHHHHH--------------HHHHHHhccCC
Q 038208 204 LGDEDGLKIL--------------KKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il--------------~~~~~aL~pgG 224 (228)
++.+-...++ ..+.+.++|+|
T Consensus 106 ~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G 140 (244)
T 1qam_A 106 ISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKR 140 (244)
T ss_dssp GHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTS
T ss_pred cCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCc
Confidence 4333333333 23666677764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-09 Score=82.49 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHGLG 205 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~ 205 (228)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .-+++++.+|+.+....||+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 356799999999999999999874 347999999 888877654 1289999999977213699999999988887
Q ss_pred hhHHHHHHHHHHHHh
Q 038208 206 DEDGLKILKKRREAI 220 (228)
Q Consensus 206 d~~~~~il~~~~~aL 220 (228)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555577888888876
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-09 Score=85.57 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=71.1
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-c
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-A 192 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-~ 192 (228)
..+++ .++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~i~~-~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 19 NQIIK-QLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHH-HCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHH-hcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence 34455 444 4567799999999999999999985 78999999 888887775 3689999999987 5552 1
Q ss_pred eEeeehhhhcCCChhHHHHHH--------------HHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKIL--------------KKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il--------------~~~~~aL~pgG~ 225 (228)
.++++.+.-++.+++....++ +.+.+.|+|||.
T Consensus 94 ~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~ 140 (245)
T 1yub_A 94 RYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRT 140 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGS
T ss_pred CcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCc
Confidence 123334443444444333333 568899999963
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.2e-09 Score=89.73 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CceEeeehhhhcC-----
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP--PADAFLFKLVFHG----- 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~----- 203 (228)
...+|||+|||+|.++..+++++ +..+++++|+ |.+++.+ .+++++++|+++..+ .||+|+++-....
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence 45699999999999999999987 6789999999 7777766 689999999988433 5999999522211
Q ss_pred -----CChhHH-----------------HHHHHHHHHHhccCCC
Q 038208 204 -----LGDEDG-----------------LKILKKRREAIASNGE 225 (228)
Q Consensus 204 -----~~d~~~-----------------~~il~~~~~aL~pgG~ 225 (228)
.+++.. ..+++++.+.|+|||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~ 159 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 159 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence 223221 2679999999999974
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-09 Score=91.52 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG-----IKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~ 199 (228)
...+|||+|||+|.++..+++..+. .+++++|+ |.+++.++. ..+++++.+|.+++.+ .||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998765 78999999 888877654 3478999999988544 599999998
Q ss_pred hhcCCChhHH----------------HHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDG----------------LKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~----------------~~il~~~~~aL~pgG~ 225 (228)
.++.++.++. ..+++++.+.|+|||.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~ 251 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGY 251 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCE
Confidence 8776655432 2689999999999974
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-09 Score=90.64 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=74.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p--~~D~v~~ 197 (228)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 455679999999999999999999887 89999999 777766543 3579999999977 3 44 3999996
Q ss_pred ------hhhhcCCChh-------HH-------HHHHHHHHHHhccCCC
Q 038208 198 ------KLVFHGLGDE-------DG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 198 ------~~vlh~~~d~-------~~-------~~il~~~~~aL~pgG~ 225 (228)
..+++..++. +. ..+|+++.+.|||||.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 384 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGR 384 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 3455544432 11 6789999999999974
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-09 Score=83.75 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=63.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CC---C--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FV---P--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~---p--~~D~v~~~~vl 201 (228)
.....+|||||||. +.+|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56678999999996 23788 788887765 3469999999977 44 4 39999999999
Q ss_pred cCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++ ++. ..+|+++++.|||||.
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~ 96 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGC 96 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEE
T ss_pred hhcccCH--HHHHHHHHHHCCCCEE
Confidence 998 554 6899999999999973
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-09 Score=92.49 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=72.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeee-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLF- 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~- 197 (228)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ .. |+++.+|..+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999999875 78999999 888877654 34 9999999876 2 34 4999985
Q ss_pred ------------hhhhcCCChhHH-------HHHHHHHHHHhccCCC
Q 038208 198 ------------KLVFHGLGDEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 198 ------------~~vlh~~~d~~~-------~~il~~~~~aL~pgG~ 225 (228)
..+...|++++. .++|+++.+.|||||.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 224 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGV 224 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 122233444333 7899999999999974
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-09 Score=88.39 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCCC------C-CceEee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TD-NLKYIAGDMFQFV------P-PADAFL 196 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~-rv~~~~gD~~~~~------p-~~D~v~ 196 (228)
+..+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++.. . .||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999999744 8999999 888887764 22 5999999997721 2 499998
Q ss_pred ehhhhcC-------C-ChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHG-------L-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~-------~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.-.... + ..+....+++++.+.|+|||.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ 267 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL 267 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcE
Confidence 8432100 0 123457899999999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=88.36 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeeh--
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFK-- 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~-- 198 (228)
...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..+|+++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 579999999 787776653 3579999999977 2 34 49999871
Q ss_pred ----hhh-------cCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 ----LVF-------HGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ----~vl-------h~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.++ +.|++++ ..++|+++.+.|||||.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 241 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGT 241 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 122 3354432 35789999999999974
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-08 Score=87.91 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=73.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC--CceEeee--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF---VP--PADAFLF-- 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~---~p--~~D~v~~-- 197 (228)
..+..+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 34567999999999999999999999899999999 776665543 33689999999772 33 4999986
Q ss_pred ----hhhhcCCCh-------hHH-------HHHHHHHHHHhccCCC
Q 038208 198 ----KLVFHGLGD-------EDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 198 ----~~vlh~~~d-------~~~-------~~il~~~~~aL~pgG~ 225 (228)
..+++..++ ++. ..+|+++.+.|||||.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~ 369 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 234444333 222 5889999999999974
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=82.19 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=65.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-- 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-- 191 (228)
..+++ ... .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 40 ~~Iv~-~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 40 NKAVE-SAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHH-hcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 34455 444 456789999999999999999998 578999999 888877764 4799999999988 6664
Q ss_pred ceEeeehhhhcCCChhHHHHHH
Q 038208 192 ADAFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il 213 (228)
||+|+.+... +++.+-..++|
T Consensus 115 fD~Iv~NlPy-~is~pil~~lL 135 (295)
T 3gru_A 115 FNKVVANLPY-QISSPITFKLI 135 (295)
T ss_dssp CSEEEEECCG-GGHHHHHHHHH
T ss_pred ccEEEEeCcc-cccHHHHHHHH
Confidence 8998866444 34444333333
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=86.93 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=69.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+.+..+|||+|||+|.++.++++..+..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .+|+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988778999999 888887764 2589999999988 544 499999975
Q ss_pred hhcCCC------hhHHHHHHHHHHHHh
Q 038208 200 VFHGLG------DEDGLKILKKRREAI 220 (228)
Q Consensus 200 vlh~~~------d~~~~~il~~~~~aL 220 (228)
..+... .+.-..+++.+.+.|
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 544321 111256778888877
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=83.44 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=69.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~v 200 (228)
..+..+|||+|||+|.++..++++ ...+++++|+ |..++.+++ .++|+++.+|..+-.+ .||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 456789999999999999999987 3568999999 888876653 6789999999987323 4999887532
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+...|..+.+.|+|||.
T Consensus 202 ------~~~~~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAKDGAI 220 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEE
T ss_pred ------CcHHHHHHHHHHHcCCCCE
Confidence 1224678888999999974
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-08 Score=81.17 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=63.0
Q ss_pred ccCCCeEEEecCCC------cHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEE-EeCCCCC-CCC-CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGN------GSFSRIISEAFP-GIKCTVLDLPHVVANLPETDNLKY-IAGDMFQ-FVP-PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~------G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~~~~rv~~-~~gD~~~-~~p-~~D~v~~~~v 200 (228)
+.+..+|||||||+ |. ..++++.| +.+++++|+.+.+ +++++ +.+|+.+ +++ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 45677999999944 76 44566776 6899999993332 47899 9999987 444 4999998643
Q ss_pred hcC---C------ChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHG---L------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~---~------~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+. + ..+....+|+.+++.|||||.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~ 166 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGS 166 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 221 1 123456899999999999974
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-08 Score=87.84 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~ 198 (228)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+|.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998764 78999999 777776653 4579999999866 2 34 49999873
Q ss_pred h------hhc-------CCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 L------VFH-------GLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~------vlh-------~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
- ++. .|+.++ ..++|+++.+.|||||.
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 229 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQ 229 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2 221 232222 23889999999999974
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-08 Score=83.60 Aligned_cols=92 Identities=7% Similarity=0.002 Sum_probs=71.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 171 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~Dl-p~~i~~ 171 (228)
+.+...|||.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 556789999999999999988876543 57999999 888887
Q ss_pred CCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhhcCC-C-hhHHHHHHHHHHHHhcc
Q 038208 172 LPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGL-G-DEDGLKILKKRREAIAS 222 (228)
Q Consensus 172 a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~-~-d~~~~~il~~~~~aL~p 222 (228)
++. .++|+++.+|+.+ +.+ .+|+|+++-..+.- . +++...+.+.+.+.|++
T Consensus 279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 764 4579999999988 444 49999988544322 2 24566788888888887
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=77.37 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCC-c-e
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVPP-A-D 193 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p~-~-D 193 (228)
..+++ .++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +
T Consensus 21 ~~iv~-~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 21 KKIAE-ELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHH-HTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHH-hcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 33445 444 456789999999999999999987 5678999999 888877665 4689999999988 5553 1 4
Q ss_pred EeeehhhhcCCChhHHHHHH
Q 038208 194 AFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il 213 (228)
++++.+.-++.+.+-..++|
T Consensus 97 ~~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHH
T ss_pred cEEEEECchhccHHHHHHHH
Confidence 45666665555544333333
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.1e-08 Score=80.25 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-F--V 189 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~--~ 189 (228)
...+++ .+. .....+|||+|||+|.++..+++++|+.+++++|+ |.+++.+++ .++++++.+|+.+ + +
T Consensus 15 l~e~l~-~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 15 VREVIE-FLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 91 (301)
T ss_dssp HHHHHH-HHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHH-hcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 344455 444 45678999999999999999999999899999999 888887664 3699999999865 2 1
Q ss_pred -----CCceEeee
Q 038208 190 -----PPADAFLF 197 (228)
Q Consensus 190 -----p~~D~v~~ 197 (228)
..+|.|++
T Consensus 92 ~~~g~~~~D~Vl~ 104 (301)
T 1m6y_A 92 KTLGIEKVDGILM 104 (301)
T ss_dssp HHTTCSCEEEEEE
T ss_pred HhcCCCCCCEEEE
Confidence 34888875
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=80.08 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 171 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~Dl-p~~i~~ 171 (228)
+.+...|+|.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 566789999999999999988875544 56999999 888887
Q ss_pred CCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhhcC-C-ChhHHHHHHHHHHHHhcc
Q 038208 172 LPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHG-L-GDEDGLKILKKRREAIAS 222 (228)
Q Consensus 172 a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~-~-~d~~~~~il~~~~~aL~p 222 (228)
++. .++++++.+|+.+ +.+ .+|+|+++-..+. . ..++...+.+.+.+.|++
T Consensus 272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 764 4579999999988 444 5999998755432 3 345677888889999987
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-08 Score=83.09 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~ 203 (228)
.+..+|||+|||+|.++.. ++ ...+++++|+ |.+++.+++ .++++++.+|+++....||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 77 4778999999 888877664 36899999999874456999998421
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.....+++.+.+.|+|||.
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~ 286 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGV 286 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEE
T ss_pred ---HhHHHHHHHHHHHcCCCCE
Confidence 1123789999999999973
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-08 Score=86.40 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-CCeEEEeCCCCCCC------C-CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------T-DNLKYIAGDMFQFV------P-PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~-~rv~~~~gD~~~~~------p-~~D~v~~ 197 (228)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ . ++++++.+|+++.. . .||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999987 4558999999 888877664 2 38999999997621 2 4999998
Q ss_pred hhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
.-..+..+. .....+++++.+.|+|||.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 330 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 330 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 432222221 4457889999999999973
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-08 Score=80.57 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=73.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC----CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVP----PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p----~~D~ 194 (228)
.+++++||-||+|.|..++++++..|..+++++|+ |.|++.+++ .+|++++.+|.++-+. .||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35789999999999999999999877789999999 888886653 6899999999987322 4999
Q ss_pred eeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
|++-..=..-+.+ -...+++.++++|+|||+
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv 193 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGI 193 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCE
Confidence 9864321111111 124689999999999985
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=77.67 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=63.6
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC---Cc
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP---PA 192 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p---~~ 192 (228)
.+++ ... .... +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 38 ~Iv~-~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 38 RIVE-AAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHH-HHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHH-hcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 3445 444 4456 99999999999999999985 67999999 788876654 4689999999987 555 36
Q ss_pred eEeeehhhhcCCChhHHHHHHH
Q 038208 193 DAFLFKLVFHGLGDEDGLKILK 214 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~ 214 (228)
|.|+ .+.-++.+.+-..++|.
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~ 132 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLK 132 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhc
Confidence 6654 44555666665555554
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-08 Score=77.94 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=60.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-c
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-A 192 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-~ 192 (228)
..+++ .+. .....+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ +++. +
T Consensus 11 ~~iv~-~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 11 DSIVS-AIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHH-HHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHH-hcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 34455 444 4566799999999999999 54 555555999999 888887765 2589999999987 5442 2
Q ss_pred -----eEeeehhhhcCCChhHHHHHH
Q 038208 193 -----DAFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 193 -----D~v~~~~vlh~~~d~~~~~il 213 (228)
+.+++.+.-++.+.+...++|
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 345555555555554444444
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-08 Score=85.30 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC------C-CceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV------P-PADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~------p-~~D~v~~~ 198 (228)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+++.. + .||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 668999999 888887764 345999999997621 3 49999974
Q ss_pred hhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
-.....+. +....+++++.+.|+|||.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 320 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI 320 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 32211111 4456799999999999974
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=81.16 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=71.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 171 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~Dl-p~~i~~ 171 (228)
+.+..+|||++||+|.++++++....+ .+++++|+ +.+++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 456789999999999999998876432 57999999 899988
Q ss_pred CCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhhcC-CC-hhHHHHHHHHHHHHhcc
Q 038208 172 LPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHG-LG-DEDGLKILKKRREAIAS 222 (228)
Q Consensus 172 a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~-~~-d~~~~~il~~~~~aL~p 222 (228)
|+. .++|+++.+|+.+ +.+ .+|+|+++-.... +. .++...+.+.+.+.|++
T Consensus 273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 764 3479999999988 344 4999998665432 22 35667788888888887
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-08 Score=84.65 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=71.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CeEEEeCCCCCCC------C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------T-D-NLKYIAGDMFQFV------P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~-~-rv~~~~gD~~~~~------p-~~D~v 195 (228)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . + +++++.+|+++.. + .||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456799999999999999999874 458999999 888877664 2 3 8999999997621 2 49999
Q ss_pred eehhhhcCCC-------hhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLG-------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~-------d~~~~~il~~~~~aL~pgG~ 225 (228)
++.-.....+ .+....++.++.+.|+|||.
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 334 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI 334 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 8853221111 14457899999999999974
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-07 Score=81.43 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=62.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-----C--CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV-----P--PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~-----p--~~D~v~ 196 (228)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..+++|+.+|+.+.+ + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 345679999999999999999987 678999999 888887764 358999999998732 2 389998
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+. .|-..+..+++.+.+ ++|++
T Consensus 362 ~d-----PPr~g~~~~~~~l~~-~~p~~ 383 (433)
T 1uwv_A 362 LD-----PARAGAAGVMQQIIK-LEPIR 383 (433)
T ss_dssp EC-----CCTTCCHHHHHHHHH-HCCSE
T ss_pred EC-----CCCccHHHHHHHHHh-cCCCe
Confidence 73 222212234444443 56654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-08 Score=80.76 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=54.1
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCC
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVPP 191 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p~ 191 (228)
.+++ .+. .....+|||||||+|.++..++++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 33 ~iv~-~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVA-AIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHH-HHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHH-hcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 3444 444 456789999999999999999998754 66999999 888887765 4789999999987 5543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-08 Score=83.35 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=69.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCCC------C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TD-NLKYIAGDMFQFV------P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~-rv~~~~gD~~~~~------p-~~D~v 195 (228)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++++.+|+++.+ . .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456799999999999999999863 348999999 888887764 23 8999999997621 2 49999
Q ss_pred eehhhh-----cCCC--hhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVF-----HGLG--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vl-----h~~~--d~~~~~il~~~~~aL~pgG~ 225 (228)
++.-.. +... .+....+++.+.+.|+|||.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~ 326 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL 326 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 984322 1222 13345688999999999974
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=81.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF---VP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~---~p-~~D~v~~~~vlh 202 (228)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .-..++..+|.++. .+ .||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 37899999999999999999974 44999999 888887764 22235679998772 23 399998753321
Q ss_pred CCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 203 GLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
..+. ..-..+++.+.+.|+|||.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~ 321 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGF 321 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 1111 2335789999999999974
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-07 Score=77.50 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p 190 (228)
..+++ ... .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~-~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVS-AIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHH-HHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHH-hcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 33455 444 4567899999999999999999985 68999999 888887654 4799999999988 443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-08 Score=88.74 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.9
Q ss_pred hhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhh--ccCCCeEEEecCCCcHHHHHHHH---HC-CCCeEEEeechH
Q 038208 94 WEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQI--FEGLGSLVDVGGGNGSFSRIISE---AF-PGIKCTVLDLPH 167 (228)
Q Consensus 94 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~---~~-p~~~~~~~Dlp~ 167 (228)
||.+++|+-+...|.+|+.. .+.+ ..+.. ..+...|+|||||+|-+....++ +. -++++.+++-..
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d-~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLD-RVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHH-HSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHH-hhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 67777788777788877532 1111 11100 12346799999999998443333 32 234789999744
Q ss_pred HHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 168 VVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 168 ~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+...+++ .++|+++.+|+.+ .+|+ +|+|+.-+.=+..-.|....+|....+-|||||+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGi 462 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGV 462 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcE
Confidence 4444432 7899999999998 7885 9999887766555556666777777888999974
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.45 E-value=9.1e-08 Score=84.14 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CC--CeEEEeCCCCC-CC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF-------------PGIKCTVLDL-PHVVANLPE------TD--NLKYIAGDMFQ-FV 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~~------~~--rv~~~~gD~~~-~~ 189 (228)
...+|+|.|||+|.++..+++.. +..+++++|+ |.+++.++. .. +++++++|.+. +.
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 45699999999999999988763 4568999999 877776653 22 78899999988 33
Q ss_pred C-CceEeeehhhhcCCChh---------------HHHHHHHHHHHHhccCCC
Q 038208 190 P-PADAFLFKLVFHGLGDE---------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p-~~D~v~~~~vlh~~~d~---------------~~~~il~~~~~aL~pgG~ 225 (228)
. .||+|+++-.++..... ....+++++.+.|+|||.
T Consensus 251 ~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~ 302 (445)
T 2okc_A 251 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR 302 (445)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCE
Confidence 3 59999998665542211 124789999999999974
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-07 Score=79.45 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=64.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .+ ++|+.+|+.+..+ .||+|++.-.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 456789999999999999999986 458999999 888887764 23 9999999988544 599999843321
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... ..+++.+. .|+|+|+
T Consensus 365 g~~----~~~~~~l~-~l~p~gi 382 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REKPGVI 382 (425)
T ss_dssp CSC----HHHHHHHH-HHCCSEE
T ss_pred chH----HHHHHHHH-hcCCCcE
Confidence 111 13444443 4899864
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-07 Score=82.24 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=80.9
Q ss_pred hhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH----C---------CCCeE
Q 038208 94 WEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA----F---------PGIKC 160 (228)
Q Consensus 94 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~~~~ 160 (228)
||-+++|+-+...|.+++... +.+... .-.+...|+|||||+|.++...+++ . ...++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a--------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA--------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH--------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHcCChhhHHHHHHHHHHH--------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 566666776666676665331 220111 0123468999999999997533222 1 23589
Q ss_pred EEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC------C-CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 161 TVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV------P-PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 161 ~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~------p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|- |..+...+. .++|+++.+|+.+ .+ | .+|+|+.-+.=.....|.....|..+.+-|||||+
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence 99998 543322221 6889999999988 55 4 49999888776555556566778888889999974
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-06 Score=72.67 Aligned_cols=92 Identities=25% Similarity=0.400 Sum_probs=66.3
Q ss_pred CCeEEEecCCCcHHHHHH--------HHHC-------CCCeEEEeechH-----H---HhcCCC--------------CC
Q 038208 134 LGSLVDVGGGNGSFSRII--------SEAF-------PGIKCTVLDLPH-----V---VANLPE--------------TD 176 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~Dlp~-----~---i~~a~~--------------~~ 176 (228)
.-+|+|+|||+|..+..+ .+++ |.+++..-|+|. + ++..++ .-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999988776 4444 889999999963 1 222111 01
Q ss_pred CeEEEeCCCCC-CCC--CceEeeehhhhcCCCh--h----------------------------------HHHHHHHHHH
Q 038208 177 NLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD--E----------------------------------DGLKILKKRR 217 (228)
Q Consensus 177 rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d--~----------------------------------~~~~il~~~~ 217 (228)
-+.-+++.|.. .+| .+|+++++.+||..++ + +-..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14456777776 577 3999999999997662 1 3456799999
Q ss_pred HHhccCCC
Q 038208 218 EAIASNGE 225 (228)
Q Consensus 218 ~aL~pgG~ 225 (228)
+.|+|||.
T Consensus 213 ~eL~pGG~ 220 (374)
T 3b5i_A 213 AEVKRGGA 220 (374)
T ss_dssp HHEEEEEE
T ss_pred HHhCCCCE
Confidence 99999963
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-07 Score=82.48 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++.+|+++. .. .||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 456799999999999999999853 346999999 888887764 2 5899999999872 22 49999874
Q ss_pred hhhc--------CCC-hhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFH--------GLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh--------~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
-.-. .+. ...-..+++++.+.|+|||.
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~ 652 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGT 652 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 3221 121 24557889999999999974
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.1e-06 Score=68.37 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=61.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech-HHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
+....+|||||||+|.|+..++++.+..+++++|+- ........ ..++..+..++.. .++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 456679999999999999998887666567777763 21111111 1144445555422 344 499999877554
Q ss_pred ---CCChh-HHHHHHHHHHHHhccC-CC
Q 038208 203 ---GLGDE-DGLKILKKRREAIASN-GE 225 (228)
Q Consensus 203 ---~~~d~-~~~~il~~~~~aL~pg-G~ 225 (228)
.|-|. ....+|+.+.+.|+|| |.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~ 179 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDN 179 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 23233 3345789999999999 63
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=71.63 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=54.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCeEEEeCCCCCC---C---
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P-------HVVANLPE-------TDNLKYIAGDMFQF---V--- 189 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p-------~~i~~a~~-------~~rv~~~~gD~~~~---~--- 189 (228)
.....+|||+|||+|..+..+++. ..+++++|+ | .+++.+++ ..|++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999996 568999999 7 67766653 35799999999762 3
Q ss_pred -CCceEeeehhhhcC
Q 038208 190 -PPADAFLFKLVFHG 203 (228)
Q Consensus 190 -p~~D~v~~~~vlh~ 203 (228)
..||+|++.-.++.
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999998765543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-06 Score=76.54 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH------------------------------------------CCCCeEEEeec-hH
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA------------------------------------------FPGIKCTVLDL-PH 167 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~~~~~~Dl-p~ 167 (228)
+....+|||.+||+|.++++.+.. .++.+++++|+ |.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 556789999999999999988764 23468999999 88
Q ss_pred HHhcCCC-------CCCeEEEeCCCCC-CCC----CceEeeehhhhcC-C-ChhHHHHHHHHHHHHhc---cCCC
Q 038208 168 VVANLPE-------TDNLKYIAGDMFQ-FVP----PADAFLFKLVFHG-L-GDEDGLKILKKRREAIA---SNGE 225 (228)
Q Consensus 168 ~i~~a~~-------~~rv~~~~gD~~~-~~p----~~D~v~~~~vlh~-~-~d~~~~~il~~~~~aL~---pgG~ 225 (228)
+++.|+. .++|++..+|+.+ ..| .+|+|+++-.... + .+++...+.+.+.+.|+ |||.
T Consensus 268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 268 VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 9887764 4569999999977 223 5899998744332 2 23455667776666665 5753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=59.33 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=52.9
Q ss_pred ccCCCeEEEecCCCc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNG-SFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP----PADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p----~~D~v~~~~vlh~~ 204 (228)
.....++||||||+| ..+..|++. .+..+++.|+ |..++ ++..|+|++.. +||+|+..+.
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP---- 98 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP---- 98 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC----
Confidence 445679999999999 588888764 3788999998 55554 99999999654 6999977652
Q ss_pred ChhHHHHHHHHHHHH
Q 038208 205 GDEDGLKILKKRREA 219 (228)
Q Consensus 205 ~d~~~~~il~~~~~a 219 (228)
| .+...-+.++++.
T Consensus 99 P-~El~~~i~~lA~~ 112 (153)
T 2k4m_A 99 P-AEIHSSLMRVADA 112 (153)
T ss_dssp C-TTTHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
Confidence 3 3334444444443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.7e-06 Score=71.63 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCeEEEecCCCcHHHHHHHHH-----------------CCCCeEEEeech-----------H-HHhcCC----CCCC---
Q 038208 134 LGSLVDVGGGNGSFSRIISEA-----------------FPGIKCTVLDLP-----------H-VVANLP----ETDN--- 177 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~Dlp-----------~-~i~~a~----~~~r--- 177 (228)
.-+|+|+||++|..+..+... .|+++++.-|+| . ..+..+ ...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999988877766 578899999998 1 111110 0112
Q ss_pred eEEEeCCCCC-CCC--CceEeeehhhhcCCC
Q 038208 178 LKYIAGDMFQ-FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 178 v~~~~gD~~~-~~p--~~D~v~~~~vlh~~~ 205 (228)
+.-++|.|.. .+| .+|+++++.+||..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls 163 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLS 163 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecC
Confidence 3345566766 577 399999999999654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=67.78 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=54.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C---CCceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--V---PPADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~---p~~D~v~ 196 (228)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++.+|+.+ + . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999985 5689999999 777776653 3689999999876 2 1 2489998
Q ss_pred e
Q 038208 197 F 197 (228)
Q Consensus 197 ~ 197 (228)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-06 Score=71.30 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=67.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCeEEEeCCCCCC--
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----T-----------------DNLKYIAGDMFQF-- 188 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~-----------------~rv~~~~gD~~~~-- 188 (228)
...+|||+|||+|..+..++++.+..+++++|+ +..++.+++ . ++++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 567999999999999999999988889999999 777765543 1 2389999998662
Q ss_pred -CC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 -VP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 -~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+ .||+|++-- . .+ ...++..+.+.|+|||.
T Consensus 127 ~~~~~fD~I~lDP-~--~~---~~~~l~~a~~~lk~gG~ 159 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F--GS---PMEFLDTALRSAKRRGI 159 (378)
T ss_dssp HSTTCEEEEEECC-S--SC---CHHHHHHHHHHEEEEEE
T ss_pred hccCCCCEEEeCC-C--CC---HHHHHHHHHHhcCCCCE
Confidence 23 499998432 1 11 24788999999999974
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-06 Score=75.18 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=44.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|..+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 4689999999999999998853 58999999 888887764 3689999999865
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-06 Score=71.91 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCCC-------C
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------------TDNLKYIAGDMFQFV-------P 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------------~~rv~~~~gD~~~~~-------p 190 (228)
++++||-||+|.|..++++++. |..+++++|+ |.|++.+++ .+|++++.+|..+-+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4679999999999999999984 5578999999 888876542 367999999986521 2
Q ss_pred CceEeeehhhhcC-------CC-hhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHG-------LG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~-------~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++=-.=.. .. ..-...+++.++++|+|||+
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GV 326 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGK 326 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCE
Confidence 4999986422110 01 12235788999999999985
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=68.20 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=64.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH----------------CCCCeEEEeechH-----HHhcCCC---CCC---eEEEeCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA----------------FPGIKCTVLDLPH-----VVANLPE---TDN---LKYIAGD 184 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~----------------~p~~~~~~~Dlp~-----~i~~a~~---~~r---v~~~~gD 184 (228)
++.-+|+|+||++|..+..+... .|.++++.-|+|. +-..... ..+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34568999999999765543332 5778899999963 2222211 112 3446677
Q ss_pred CCC-CCC--CceEeeehhhhcCCCh-------------------------------hHHHHHHHHHHHHhccCCC
Q 038208 185 MFQ-FVP--PADAFLFKLVFHGLGD-------------------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 185 ~~~-~~p--~~D~v~~~~vlh~~~d-------------------------------~~~~~il~~~~~aL~pgG~ 225 (228)
|.. .+| .+|+++.+..||..++ .+-..+|+..++.|+|||.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 777 577 3999999999996653 1234569999999999973
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.7e-06 Score=72.93 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CCC-----eEEEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP------------------GIKCTVLDL-PHVVANLPE------TDN-----LKYIA 182 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-p~~i~~a~~------~~r-----v~~~~ 182 (228)
...+|+|.+||+|.++..+.+... ..+++++|+ |.++..++. .+. +++.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 456999999999999998877532 247999999 777766542 232 88999
Q ss_pred CCCCC-C---CCCceEeeehhhhcCCC------------hhHHHHHHHHHHHHhccCCC
Q 038208 183 GDMFQ-F---VPPADAFLFKLVFHGLG------------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 183 gD~~~-~---~p~~D~v~~~~vlh~~~------------d~~~~~il~~~~~aL~pgG~ 225 (228)
+|.+. + .+.||+|+++-.+.... ...-..+++++.+.|+|||.
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 307 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence 99987 2 23599999875544321 11224789999999999974
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.8e-06 Score=71.91 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=67.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCC----CC-CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-------TDN-LKYIAGDMFQF----VP-PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-------~~r-v~~~~gD~~~~----~p-~~D~v~~ 197 (228)
+..+|||++||+|.++..++++.++ .+++.+|+ |..++.+++ .++ ++++.+|.++- .+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998766 57999999 888877664 345 99999998652 23 4999987
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-- ...+ ..+++.+.+.|+|||.
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~gGl 153 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKRGGI 153 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCCCCE
Confidence 54 1111 3588999999999974
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=65.40 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=56.6
Q ss_pred HHHHHHhhhhhccCC--CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCeEEE
Q 038208 120 SFVVKAECKQIFEGL--GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHV-------VANLP----E-T---DNLKYI 181 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~-------i~~a~----~-~---~rv~~~ 181 (228)
..+++ .+. +.+. .+|||++||+|..+..++++ ..+++++|+ |.+ ++.++ . . +|++++
T Consensus 76 e~l~~-al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 76 EAVAK-AVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp SHHHH-HTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred HHHHH-Hhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 33444 443 4455 79999999999999999998 568999999 644 32221 1 1 579999
Q ss_pred eCCCCC---CCC-CceEeeehhhhcC
Q 038208 182 AGDMFQ---FVP-PADAFLFKLVFHG 203 (228)
Q Consensus 182 ~gD~~~---~~p-~~D~v~~~~vlh~ 203 (228)
++|..+ .++ .||+|++--..+.
T Consensus 151 ~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 151 HASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp ESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred ECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 999865 233 4999998766654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=65.40 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC-eEEEeC-CCCCCCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDN-LKYIAG-DMFQFVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~r-v~~~~g-D~~~~~p--~~D~v~~~~vl 201 (228)
+....+|||||||+|.|+...+++.+...++++|+ ......+.. ..+ +.+... |+.. ++ .+|+|++-...
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIPGDTLLCDIGE 166 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCCCSEEEECCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCCcCEEEecCcc
Confidence 55667999999999999999998877777888888 222222221 223 334433 4433 33 49999887665
Q ss_pred cC---CChh-HHHHHHHHHHHHhccC--CC
Q 038208 202 HG---LGDE-DGLKILKKRREAIASN--GE 225 (228)
Q Consensus 202 h~---~~d~-~~~~il~~~~~aL~pg--G~ 225 (228)
+. +-|. ....+|+-+.+.|+|| |.
T Consensus 167 nsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~ 196 (282)
T 3gcz_A 167 SSPSIAVEEQRTLRVLNCAKQWLQEGNYTE 196 (282)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCChHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 51 1122 2335788889999999 63
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.2e-05 Score=69.67 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCeEEEeCCCCCC---CC--CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----T----DNLKYIAGDMFQF---VP--PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~----~rv~~~~gD~~~~---~p--~~D~v~~ 197 (228)
...+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++++|+.+. .+ .||+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 3689999999999999999887 468999999 888877653 1 5799999999873 22 5999988
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.73 E-value=4.7e-05 Score=62.47 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=58.2
Q ss_pred hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C--C--
Q 038208 118 MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-F--V-- 189 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~--~-- 189 (228)
+...+++ .+. ......+||.+||.|.++..|+++ +.+++++|. |.+++.+++ .+|++++.+||.+ + +
T Consensus 10 Ll~e~le-~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 10 LYQEALD-LLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp THHHHHH-HHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHH-hhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 3456666 665 556789999999999999999998 789999999 888765532 2699999999966 2 1
Q ss_pred ---CCceEeee
Q 038208 190 ---PPADAFLF 197 (228)
Q Consensus 190 ---p~~D~v~~ 197 (228)
..+|.|++
T Consensus 85 ~g~~~vDgIL~ 95 (285)
T 1wg8_A 85 LGVERVDGILA 95 (285)
T ss_dssp TTCSCEEEEEE
T ss_pred cCCCCcCEEEe
Confidence 24788775
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.7e-05 Score=63.39 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=61.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 038208 133 GLGSLVDVGGGNGSFSRIISEA-------FPG-----IKCTVLDL-P---HVVANL-----------P------------ 173 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~Dl-p---~~i~~a-----------~------------ 173 (228)
+..+|||||+|+|..+..+++. +|+ ++++.+|. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998887664 674 67899987 5 222211 0
Q ss_pred ------C--CCCeEEEeCCCCC---CCC-----CceEeeehh-hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 174 ------E--TDNLKYIAGDMFQ---FVP-----PADAFLFKL-VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 174 ------~--~~rv~~~~gD~~~---~~p-----~~D~v~~~~-vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+++++.||..+ .++ .||+|++-- .-...|+--...+|+.+++.|+|||+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~ 208 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGT 208 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcE
Confidence 1 2467899999866 232 489998732 11101110124689999999999974
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=59.97 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCeEEEeCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE---------------------------TDNLKYIAGD 184 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~---------------------------~~rv~~~~gD 184 (228)
.+...||.+|||.......+...+|+++++-+|+|++++.-++ .++.+++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999889999999999998864321 2789999999
Q ss_pred CCC-CC----------CC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 185 MFQ-FV----------PP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 185 ~~~-~~----------p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+.+ +. ++ ..++++-.+|++++++++.++|+.+.+.. |+|
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~ 226 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHG 226 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSE
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCc
Confidence 987 22 12 68889999999999999999999999876 443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=61.08 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=54.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVP---PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p---~~D~v~~~~vl 201 (228)
+.+..++||+||++|.++..++++ +.+++++|+-++-......++|+++.+|.++..| .+|++++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 456789999999999999999998 6899999974333333346899999999988333 38999876544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=67.83 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC---CCeEEEeec-hHHHhcC--CC----------CCCeEEEeCCCCCC----CCCc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP---GIKCTVLDL-PHVVANL--PE----------TDNLKYIAGDMFQF----VPPA 192 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~Dl-p~~i~~a--~~----------~~rv~~~~gD~~~~----~p~~ 192 (228)
...+|+|.|||+|.++.+++++.+ ..+++++|+ |.+++.+ +. .+...+...|++.+ ...|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999999886 357999999 7666655 10 22346677777762 2259
Q ss_pred eEeeehhhhcC-CChh-H-------------------------HHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHG-LGDE-D-------------------------GLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~-~~d~-~-------------------------~~~il~~~~~aL~pgG~ 225 (228)
|+|+++=..-. +..+ . ...+++++.+.|+|||.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGr 460 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTV 460 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcE
Confidence 99988655421 2211 1 23467889999999974
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.8e-05 Score=69.07 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCeEEEecCCCcHHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFP---------------GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F- 188 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~- 188 (228)
..+|+|.+||+|.++..+.+..+ ..+++++|+ |.++..++. ..++.+.++|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 45999999999999998765432 467999999 777776652 2345558999877 3
Q ss_pred CC--CceEeeehhhhc--CCChh-------------------------HHHHHHHHHHHHhccCCC
Q 038208 189 VP--PADAFLFKLVFH--GLGDE-------------------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p--~~D~v~~~~vlh--~~~d~-------------------------~~~~il~~~~~aL~pgG~ 225 (228)
.+ .||+|+++=... .|..+ .-..+++.+.+.|+|||.
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 23 499999864443 23221 113689999999999975
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=59.83 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=60.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech-HHHhcCCC----C-CCeEEEeC-CCCCCCC-CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVVANLPE----T-DNLKYIAG-DMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~~----~-~rv~~~~g-D~~~~~p-~~D~v~~~~vlh 202 (228)
+.+..+||||||++|.|+..++++.+-..++++|+. ........ . +-+.+..+ |++.-.+ .+|+|++-...+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 456789999999999999999987766678888883 21111110 1 22444444 5544222 489998765544
Q ss_pred --CCC-h-hHHHHHHHHHHHHhccC-CC
Q 038208 203 --GLG-D-EDGLKILKKRREAIASN-GE 225 (228)
Q Consensus 203 --~~~-d-~~~~~il~~~~~aL~pg-G~ 225 (228)
.+. | .....+|+-+.+.|+|| |.
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~LkpG~G~ 186 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHVNTEN 186 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 111 1 12245688889999999 63
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00076 Score=54.42 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=55.6
Q ss_pred hccCCCeEEEecCCCcHHHHHHHHHCCCCe----EEEeechHHHhcCCC-CCCe---EEEeC-CCCCCCC-CceEeeehh
Q 038208 130 IFEGLGSLVDVGGGNGSFSRIISEAFPGIK----CTVLDLPHVVANLPE-TDNL---KYIAG-DMFQFVP-PADAFLFKL 199 (228)
Q Consensus 130 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~----~~~~Dlp~~i~~a~~-~~rv---~~~~g-D~~~~~p-~~D~v~~~~ 199 (228)
.+.+..+|||+||+.|.|+...+++-+-.. +++.|+ + +..... ...+ .|+.+ |+++..+ .+|+|++=.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDM 147 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDI 147 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCC
Confidence 356788999999999999999888621112 234443 1 111111 1455 55557 9987434 589997544
Q ss_pred hhc--CCChhH--HHHHHHHHHHHhccCC
Q 038208 200 VFH--GLGDED--GLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh--~~~d~~--~~~il~~~~~aL~pgG 224 (228)
.-. ++.-++ ....|.-+.+.|+|||
T Consensus 148 APnSG~~~vD~~Rs~~aL~~A~~~Lk~gG 176 (269)
T 2px2_A 148 GESSPSAEIEEQRTLRILEMVSDWLSRGP 176 (269)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHhhcCC
Confidence 321 111122 1234667778999997
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00036 Score=62.67 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC-CC-----CceE
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQF-VP-----PADA 194 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~-~p-----~~D~ 194 (228)
...+|+|.+||+|.++..+.+.. +..+++++|+ +.++..++. .+++.+.++|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45699999999999999999885 3678999999 777766652 25789999999873 22 3999
Q ss_pred eeehhhhc-CCChh--------------------HHHHHHHHHHHHhc-cCCC
Q 038208 195 FLFKLVFH-GLGDE--------------------DGLKILKKRREAIA-SNGE 225 (228)
Q Consensus 195 v~~~~vlh-~~~d~--------------------~~~~il~~~~~aL~-pgG~ 225 (228)
|+.+=... .|..+ .-..+++++.+.|+ |||.
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr 353 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV 353 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence 99763221 12110 01358999999999 9975
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00072 Score=56.43 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC----------C-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDLPHVVANLP---------ETDNLKYIAGDMFQFV----------P- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~---------~~~rv~~~~gD~~~~~----------p- 190 (228)
.+...||+||||-=.....+. .| +++++-+|.|.+++..+ ..++..++..|+.+.+ +
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 356789999999988866654 34 47899999999887533 2578999999997521 1
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..-++++-.+||++++++...+++.+.+.+.||+
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs 212 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS 212 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCe
Confidence 2567788899999999999999999999988874
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.001 Score=55.92 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=55.0
Q ss_pred hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC
Q 038208 118 MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ 187 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~ 187 (228)
+..++++ .+. ..+...+||..+|.|..+..|+++. |+.+++++|. |.+++.++. .+|++++.++|.+
T Consensus 45 Ll~Evl~-~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVN-GLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHH-HTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHH-hhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3456666 554 4567899999999999999999985 8899999999 888887643 5799999999865
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0014 Score=52.33 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC--C---CCCeEEEeC-CCCC-CCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP--E---TDNLKYIAG-DMFQ-FVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--~---~~rv~~~~g-D~~~-~~p~~D~v~~~~vlh 202 (228)
+....+||||||++|.++...+......++.++|+ +.-.+.-+ + -+.|+|..+ |++. +.-.+|++++-.-=.
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDIgeS 155 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIGES 155 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccccEEEEecCCC
Confidence 55667999999999999998888776668999998 32222111 1 467999999 9765 222488887644332
Q ss_pred CCC-hhHH---HHHHHHHHHHhcc
Q 038208 203 GLG-DEDG---LKILKKRREAIAS 222 (228)
Q Consensus 203 ~~~-d~~~---~~il~~~~~aL~p 222 (228)
.-+ .-+. .++|.-+.+.|++
T Consensus 156 s~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 156 SPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred CCChhhhhhHHHHHHHHHHHhccc
Confidence 222 1122 2345555566665
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0018 Score=55.14 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=67.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C-CC-Cce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------ETDNLKYIAGDMFQ--F-VP-PAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------~~~rv~~~~gD~~~--~-~p-~~D 193 (228)
.....+|||+++|.|.=+..|++..++.+++..|+ +.-+..++ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 45678999999999999999999887778999998 54333221 13678999999876 2 33 499
Q ss_pred Eeee----h----hhh-------cCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 194 AFLF----K----LVF-------HGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~----~----~vl-------h~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.|++ + .++ +.|..++ -.+||+++.+.|||||.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~ 279 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGH 279 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9975 1 112 2233222 25789999999999974
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0029 Score=49.40 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=57.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC------------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQF------------ 188 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~------------ 188 (228)
+.+..+||+||+| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+-
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 4567899999985 55556665 46789999998 666655542 45899999996431
Q ss_pred ------------C---CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 ------------V---PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ------------~---p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ..||+|++--- . ...-+..+.+.|+|||+
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~------k-~~~~~~~~l~~l~~GG~ 149 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR------F-RVGCALATAFSITRPVT 149 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS------S-HHHHHHHHHHHCSSCEE
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC------C-chhHHHHHHHhcCCCeE
Confidence 1 23899987541 1 12445556788999974
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0084 Score=49.29 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc--CCC---CCCeEEEeC-CCCC-CCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN--LPE---TDNLKYIAG-DMFQ-FVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~--a~~---~~rv~~~~g-D~~~-~~p~~D~v~~~~vlh 202 (228)
+....+||||||++|.++...+......++.++|+ ..-.+. ..+ -.-|.+..+ |++. +...+|++++--- -
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDig-e 170 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIG-E 170 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCC-C
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEECc-c
Confidence 45567999999999999998777765557999998 221111 001 234889998 9765 2224788775433 2
Q ss_pred CCCh----h-HHHHHHHHHHHHhccC
Q 038208 203 GLGD----E-DGLKILKKRREAIASN 223 (228)
Q Consensus 203 ~~~d----~-~~~~il~~~~~aL~pg 223 (228)
.-+. + ...++|.-+-+.|++|
T Consensus 171 Ss~~~~ve~~Rtl~vLel~~~wL~~~ 196 (321)
T 3lkz_A 171 SSSSAEVEEHRTIRVLEMVEDWLHRG 196 (321)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhhhhHHHHHHHHHHHHhccC
Confidence 2221 1 1234677777888877
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0035 Score=53.20 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=43.1
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP---ETDNLKYIAGDMFQ 187 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---~~~rv~~~~gD~~~ 187 (228)
...|||||.|.|.++..|+++....+++++++ +..++..+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 57899999999999999999754457999988 55544332 25799999999975
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.004 Score=51.20 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=63.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC-----CCCeEEEeec-h---H-----------------------HHhcCCC-----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF-----PGIKCTVLDL-P---H-----------------------VVANLPE----- 174 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl-p---~-----------------------~i~~a~~----- 174 (228)
..+..||+||+..|..+..+++.. |+.+++++|. . + .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 357899999999999998887654 5788999994 1 1 1111111
Q ss_pred ---CCCeEEEeCCCCCC---CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ---TDNLKYIAGDMFQF---VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ---~~rv~~~~gD~~~~---~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|+++.||+.+. .+ .+|++++=. ++. +.....|..+...|+|||+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa---D~y-~~~~~~Le~~~p~L~pGGi 239 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG---DLY-ESTWDTLTNLYPKVSVGGY 239 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC---CSH-HHHHHHHHHHGGGEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC---Ccc-ccHHHHHHHHHhhcCCCEE
Confidence 38999999999763 32 378887654 221 3346789999999999975
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0064 Score=50.17 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=34.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE 174 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~ 174 (228)
....+|||++||+|..+.++++. +.+++++|+ |.+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 35679999999999999998886 568999999 888876653
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.016 Score=47.67 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=58.8
Q ss_pred ccCCCeEEEecC------CCcHHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCeEEEeCCCCC-CC-CCceEeeehhh-
Q 038208 131 FEGLGSLVDVGG------GNGSFSRIISEAFPG-IKCTVLDLPHVVANLPETDNLKYIAGDMFQ-FV-PPADAFLFKLV- 200 (228)
Q Consensus 131 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~~-p~~D~v~~~~v- 200 (228)
.+...+|||+|+ -+|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+ .. ..+|+|++=..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 356789999995 77774 34455786 689999995544321 2 459999876 22 34999965321
Q ss_pred ------hcCC--ChhHHHHHHHHHHHHhccCCC
Q 038208 201 ------FHGL--GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 ------lh~~--~d~~~~~il~~~~~aL~pgG~ 225 (228)
-++- ...-+..+|.=+.+.|+|||.
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGs 212 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGS 212 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCE
Confidence 1111 233577788889999999974
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.15 Score=42.86 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCeEEEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDLPHVVANLP-----------------------------ETDNLKYIA 182 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dlp~~i~~a~-----------------------------~~~rv~~~~ 182 (228)
+...||-+|||.=.....+... .++++++=+|+|++++.-+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999988875 3678899999999886311 147899999
Q ss_pred CCCCC--C---------CC-C-ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 183 GDMFQ--F---------VP-P-ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 183 gD~~~--~---------~p-~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.|+.+ . +. + .-++++-.+|.+++++++..+|+.+.+..+++
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~ 223 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERA 223 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSE
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99976 1 12 2 56788888999999999999999999876543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.011 Score=62.00 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCeEEEeCCCCCC---CC-CceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPG-----IKCTVLDL-PHVVANLPET---DNLKYIAGDMFQF---VP-PADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~~~---~rv~~~~gD~~~~---~p-~~D~v~~~~v 200 (228)
..+||+||.|+|..+..+++...+ .+++.-|+ +...+.+++. -.++.-.-|...+ .+ .||+|+..++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 458999999999887777766432 25777788 6666666541 1233222233222 12 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
||.-++. ...|+++++.|+|||
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p~G 1342 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKEGG 1342 (2512)
T ss_dssp ----------------------CC
T ss_pred ccccccH--HHHHHHHHHhcCCCc
Confidence 9966544 567999999999997
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.055 Score=48.32 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=59.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC--
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF-------------PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV-- 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~-- 189 (228)
...+|+|-.||+|.++....+.. ....+.++|+ +.+...++. .+.-.+..+|.+. +.
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~ 296 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE 296 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence 45699999999999998776532 1346899999 666655542 3445678888875 32
Q ss_pred --C--CceEeeehhhhcC-CC-------------hhHHHHHHHHHHHHhc
Q 038208 190 --P--PADAFLFKLVFHG-LG-------------DEDGLKILKKRREAIA 221 (228)
Q Consensus 190 --p--~~D~v~~~~vlh~-~~-------------d~~~~~il~~~~~aL~ 221 (228)
+ .||+|+.+=..-. |. .+.....+..+...|+
T Consensus 297 ~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 346 (530)
T 3ufb_A 297 MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLK 346 (530)
T ss_dssp CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBC
T ss_pred hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhh
Confidence 1 3999987655421 11 1223456788888887
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.38 Score=35.67 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 103 INQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 103 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
+...|-+-|.+..... .+.+. .. -.-..-|+|+|=|+|..=..+.+.+|+.++.++|..-..--..-.+.-.++.
T Consensus 15 RLDsfirRltaQR~~L-~~a~~-~v---~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~il 89 (174)
T 3iht_A 15 RLDLFIDRMVSQRACL-EHAIA-QT---AGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLIL 89 (174)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH-HT---TTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-Hh---cCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheec
Confidence 4456666665543322 22222 22 1335789999999999999999999999999999621111011134556778
Q ss_pred CCCCCC
Q 038208 183 GDMFQF 188 (228)
Q Consensus 183 gD~~~~ 188 (228)
||+.+.
T Consensus 90 Gdi~~t 95 (174)
T 3iht_A 90 GDIRET 95 (174)
T ss_dssp SCHHHH
T ss_pred ccHHHH
Confidence 888663
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=40.96 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=33.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 173 (228)
.....|||..||+|..+.+..+. +.+++++|+ |..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45679999999999999998887 578999999 77766543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.21 Score=41.40 Aligned_cols=88 Identities=25% Similarity=0.302 Sum_probs=53.7
Q ss_pred CCCeEEEecCCCcHHHH----HHHHHCCCCeE--EEeechHHHhc------------------CCC--CCC--eEEEeCC
Q 038208 133 GLGSLVDVGGGNGSFSR----IISEAFPGIKC--TVLDLPHVVAN------------------LPE--TDN--LKYIAGD 184 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~Dlp~~i~~------------------a~~--~~r--v~~~~gD 184 (228)
..-+|+|+|=|+|.... .+.+..|+.++ +-+|- ..+.. ... ..+ +++..||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 34689999999998543 23456788764 44542 11110 000 334 4567889
Q ss_pred CCCC---CC--CceEeeehhh-----hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 185 MFQF---VP--PADAFLFKLV-----FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 185 ~~~~---~p--~~D~v~~~~v-----lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+. ++ .+|++++=-. -.-|+ ..+|+++++.++|||+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~pgg~ 221 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDEKGY 221 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEEEEE
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCCCcE
Confidence 8662 33 3899876321 11233 4689999999999974
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=89.59 E-value=0.56 Score=40.11 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=38.8
Q ss_pred CccHHHHHHHHHHhccchhHHHHHHHhhhh-hccCCCeEEEecCCCcHHHHHHHHHC-------CCCeEEEeechH
Q 038208 100 NPGINQRFNEAMASDSEIMTSFVVKAECKQ-IFEGLGSLVDVGGGNGSFSRIISEAF-------PGIKCTVLDLPH 167 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~Dlp~ 167 (228)
.|+....|.+.++. +++. .+.. ..+..-.|+++|+|+|.++.-+++.. ..++++++|...
T Consensus 54 apeis~~FGe~la~-------~~~~-~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGL-------WSAS-VWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHH-------HHHH-HHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHH-------HHHH-HHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 46666677666543 2222 2221 12344579999999999999888652 345899999844
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=89.52 E-value=0.56 Score=40.29 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=39.9
Q ss_pred cCCCeEEEecCCCcHHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCeEEEeCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIIS-EAFPG-IKCTVLDL-PHVVANLPE---------T-DNLKYIAGDM 185 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~Dl-p~~i~~a~~---------~-~rv~~~~gD~ 185 (228)
.+..+|+|||++.|.++..++ +..++ .+++.++- |...+..++ . ++|+++..-.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 466899999999999999988 66765 79999997 765554332 2 5666665444
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=89.50 E-value=1.2 Score=37.72 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----C-------CCceEeeehhh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLPE-TDNLKYIAGDMFQF----V-------PPADAFLFKLV 200 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~----~-------p~~D~v~~~~v 200 (228)
-+++|+-||.|.++..+.++. .+ +.++|+ +..++..+. .+...++++|+.+- + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 379999999999999999984 55 458898 665554443 45678888998651 2 35899988777
Q ss_pred hcCCC
Q 038208 201 FHGLG 205 (228)
Q Consensus 201 lh~~~ 205 (228)
...|+
T Consensus 81 CQ~fS 85 (376)
T 3g7u_A 81 CQGFS 85 (376)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 66665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=1.5 Score=40.27 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP--------GIKCTVLDLPHVVANLPE------------------------------ 174 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~Dlp~~i~~a~~------------------------------ 174 (228)
+...||-+|||.=.....+...+| +++++=+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988766 677888888988853110
Q ss_pred CCCeEEEeCCCCCC-------------CCC-ceEeeehhhhcCCChhHHHHHHHHHHH
Q 038208 175 TDNLKYIAGDMFQF-------------VPP-ADAFLFKLVFHGLGDEDGLKILKKRRE 218 (228)
Q Consensus 175 ~~rv~~~~gD~~~~-------------~p~-~D~v~~~~vlh~~~d~~~~~il~~~~~ 218 (228)
.++.++++.|+.+. -+. .-++++--+|.+++++++.++|+.+.+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~ 244 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK 244 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh
Confidence 14899999999862 122 456778889999999999999999874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.02 E-value=0.46 Score=38.82 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=61.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC----CC---CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQF----VP---PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~----~p---~~D~v~~~~v 200 (228)
+...+||+=+|||.++.+.++ +.-+++.+|+ +..++..++ .++++++..|.++- .| .+|+|++==.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 456789999999999999999 4578999999 777765554 57899999997551 22 3899887543
Q ss_pred hcCCChhHHHHHHHHHHHHh--ccCC
Q 038208 201 FHGLGDEDGLKILKKRREAI--ASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL--~pgG 224 (228)
... .++..++++.+.++. .|+|
T Consensus 169 Ye~--k~~~~~vl~~L~~~~~r~~~G 192 (283)
T 2oo3_A 169 YER--KEEYKEIPYAIKNAYSKFSTG 192 (283)
T ss_dssp CCS--TTHHHHHHHHHHHHHHHCTTS
T ss_pred CCC--CcHHHHHHHHHHHhCccCCCe
Confidence 332 124456666666543 4554
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.65 E-value=0.38 Score=39.05 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=37.5
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
-+.|++.|...+.++|+.| +|+.|+..|++++++ ++.|++++..-
T Consensus 32 al~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~----~~~Y~LG~~~~ 90 (275)
T 3mq0_A 32 AVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA----DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT----TSEEEECTHHH
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC----CCcEEehHHHH
Confidence 4568999988766899988 999999999999986 57899998443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=1.6 Score=35.96 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred CCeEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeehhhhcCCChhHH
Q 038208 134 LGSLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFKLVFHGLGDEDG 209 (228)
Q Consensus 134 ~~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~~d~~~ 209 (228)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ -..++|+|++.- ++...
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36788899764 234445555543348999998 6666554432222122334433 345689998763 44556
Q ss_pred HHHHHHHHHHhccCC
Q 038208 210 LKILKKRREAIASNG 224 (228)
Q Consensus 210 ~~il~~~~~aL~pgG 224 (228)
..+++++...++||-
T Consensus 108 ~~vl~~l~~~l~~~~ 122 (314)
T 3ggo_A 108 REIAKKLSYILSEDA 122 (314)
T ss_dssp HHHHHHHHHHSCTTC
T ss_pred HHHHHHHhhccCCCc
Confidence 778899998888873
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.63 E-value=2.1 Score=32.35 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=53.2
Q ss_pred eEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC----CCCceEeeehhhhcCCChhH
Q 038208 136 SLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF----VPPADAFLFKLVFHGLGDED 208 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~----~p~~D~v~~~~vlh~~~d~~ 208 (228)
+||=. ||+|..+..++++. .+.++++++. ++-.+... ++++++.+|+.++ +.++|+++..--......+.
T Consensus 2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 34444 45666666655543 2468888887 44443322 6899999999763 33578887554433223334
Q ss_pred HHHHHHHHHHHhccCC
Q 038208 209 GLKILKKRREAIASNG 224 (228)
Q Consensus 209 ~~~il~~~~~aL~pgG 224 (228)
.....+++.++++..|
T Consensus 79 ~~~~~~~l~~a~~~~~ 94 (221)
T 3ew7_A 79 HVTSLDHLISVLNGTV 94 (221)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5667788888887664
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=86.52 E-value=0.5 Score=29.53 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=32.1
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCC
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLT 59 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t 59 (228)
+..|++.|..++.|+|..| .+..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPS----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEE----TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCC----CceEeeC
Confidence 5568888877545888887 889999999998765 5778754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=0.71 Score=37.14 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hh------
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA-------FPGIKCTVLDL----PHV------------------------VA------ 170 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl----p~~------------------------i~------ 170 (228)
.-+..|+++|+-.|..+..+++. .++-++.++|. |+. +.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 34679999999999988886652 46789999993 321 00
Q ss_pred -cCCC----CCCeEEEeCCCCCCC-------C--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 171 -NLPE----TDNLKYIAGDMFQFV-------P--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 171 -~a~~----~~rv~~~~gD~~~~~-------p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+. .++|+++.|++.+.+ | .+|++++=. ++- +.....|..+...|+|||+
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~Y-~~t~~~le~~~p~l~~GGv 212 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DLY-EPTKAVLEAIRPYLTKGSI 212 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CCH-HHHHHHHHHHGGGEEEEEE
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---ccc-chHHHHHHHHHHHhCCCcE
Confidence 0011 378999999997632 3 277777654 221 3346788899999999975
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=85.01 E-value=1.5 Score=36.65 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=48.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----CC--CceEeeehhhhcCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-TDNLKYIAGDMFQF----VP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~----~p--~~D~v~~~~vlh~~~ 205 (228)
.+|+|+-||.|.+...+.++.-+. .+..+|+ +..++..+. .+...++.+|+.+- ++ .+|+++...-...++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 489999999999999999985333 3788898 666655443 34456788998762 33 589998887766554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.24 E-value=4.2 Score=28.18 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=46.2
Q ss_pred CeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCceEeeehhhhcCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-------VPPADAFLFKLVFHGL 204 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-------~p~~D~v~~~~vlh~~ 204 (228)
.+|+=+|+ |..+..+++.. .+.+++++|. ++.++.+++...+.++.+|..++ ..++|+++...
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 46777776 55555554432 2567999998 65555443222566777887541 33588887653
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 038208 205 GDEDGLKILKKRREAIASN 223 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pg 223 (228)
+++.....+..+.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ 96 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGIN 96 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHHcCCC
Confidence 2233233444455555553
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=83.81 E-value=3.9 Score=28.77 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=40.5
Q ss_pred CeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCceEeeehh
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-------VPPADAFLFKL 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-------~p~~D~v~~~~ 199 (228)
.+++=+|+| .++..+++.. -+.+++++|. ++.++.+++ ..+.++.+|..++ ..++|+++...
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 468888874 4555555433 2568999998 666655543 4578889998763 23578877543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=1.9 Score=37.34 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=38.7
Q ss_pred cCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCC-----CCeEEEeec
Q 038208 99 QNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFP-----GIKCTVLDL 165 (228)
Q Consensus 99 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-----~~~~~~~Dl 165 (228)
..|+....|.+.++.+ +++ .+. ..+..+|+|+|+|+|.++..+++... ..++++++.
T Consensus 113 TAPeiS~~FGe~la~~-------~~~-~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~ 174 (432)
T 4f3n_A 113 TAPELSPLFAQTLARP-------VAQ-ALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDL 174 (432)
T ss_dssp SCGGGHHHHHHHHHHH-------HHH-HHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECT
T ss_pred CchhhhHHHHHHHHHH-------HHH-HHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 4678888887765432 233 222 12356999999999999998876432 237889987
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=81.04 E-value=1.5 Score=35.84 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC----CeEEEeechHHHhcCCCCCCeEEEeC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG----IKCTVLDLPHVVANLPETDNLKYIAG 183 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dlp~~i~~a~~~~rv~~~~g 183 (228)
++..|+=||||.|.++..+.+.+|+ ++.+++|-..-........+|+.+..
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~ 114 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR 114 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEec
Confidence 4579999999999999999998886 59999996221222233567777765
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=80.95 E-value=0.68 Score=37.10 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=35.2
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
+.|++.|...++++|+.| +|+.|+..|++++++. .+.|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~---~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEG---ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSS---SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEcCHHH
Confidence 457888876546889888 9999999999999862 3899999744
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 228 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-45 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-39 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-29 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 3e-16 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 4e-16 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 2e-15 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 3e-15 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 9e-14 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 4e-09 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 1e-08 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 149 bits (377), Expect = 2e-45
Identities = 75/158 (47%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 71 FSLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQI 130
L W +LTL+G G FW+FL++NP N FN+AMASDS+++ + +C +
Sbjct: 20 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL--RDCDFV 77
Query: 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVP 190
F+GL S+VDVGGG G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P
Sbjct: 78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 137
Query: 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
ADA L K + H D+D L+ILKK +EA+ ++G+RGK
Sbjct: 138 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGK 175
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 134 bits (337), Expect = 2e-39
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 71 FSLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQI 130
+ ++ L+ VHG+ +EF+ ++ +NQ FN++M ++ E
Sbjct: 21 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML--EIYTG 78
Query: 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVP 190
FEG+ +LVDVGGG+G +I +P IK DLP V+ N P ++++ GDMF VP
Sbjct: 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 138
Query: 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
DA + K V H DE ++ L +A++ NG
Sbjct: 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG 172
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 107 bits (267), Expect = 4e-29
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 57 GLTASSTLLIKENPFSLSSWFKGTELTLWG-----TVHGIKFWEFLNQNPGINQRFNEAM 111
G++ S+ L+ ++ + SW+ + L G +G+ +E+ +P N+ FN+ M
Sbjct: 2 GVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGM 61
Query: 112 ASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVAN 171
+ S I ++ E FEGL SLVDVGGG G+ I +P IK DLPHV+ +
Sbjct: 62 SDHSTITMKKIL--ETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 119
Query: 172 LPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAI 220
P ++++ GDMF +P ADA K + H DE LK LK EA+
Sbjct: 120 APSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL 168
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 73.5 bits (179), Expect = 3e-16
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+ +G FWE L+ + + F+ M+ D ++ A + + ++DVGGGN
Sbjct: 36 YAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD---WSAVRHVLDVGGGN 92
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVV-------ANLPETDNLKYIAGD-MFQFVPPADAFL 196
G I+ P ++ T+++L A+ D + GD AD L
Sbjct: 93 GGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVL 152
Query: 197 FKLVFHGLGDEDGLKILKKRREAIA 221
V DED L IL+ A+
Sbjct: 153 LSFVLLNWSDEDALTILRGCVRALE 177
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 69.5 bits (170), Expect = 4e-16
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 24/85 (28%)
Query: 7 SMSLKCAIELSIADIIHCHGRAITLSE--------------------LMRLLVHSGCFNK 46
M LK A+EL + +II G +S ++RLL
Sbjct: 21 PMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTC 80
Query: 47 TKV----NGQEEAYGLTASSTLLIK 67
+ + YGL + L+K
Sbjct: 81 SVRTQQDGKVQRLYGLATVAKYLVK 105
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 67.5 bits (165), Expect = 2e-15
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 27/94 (28%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGR---AITLSEL--------------------MRL 37
N + L AI+L++ +II ++ SE+ +RL
Sbjct: 14 TTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRL 73
Query: 38 LVHSGCFNKTKV----NGQEEAYGLTASSTLLIK 67
L T G E YGL+ L+
Sbjct: 74 LASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVP 107
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 66.8 bits (163), Expect = 3e-15
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 19/86 (22%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++ + SMSLK A+E++I +II HG+ I+LS L MR L H+G
Sbjct: 17 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 76
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKEN 69
F + +EE+Y LT +S LL++ +
Sbjct: 77 F--EIITKEEESYALTVASELLVRGS 100
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 66.2 bits (160), Expect = 9e-14
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+ +++G F+E L P + F+ +A D ++ + + ++DVGGG
Sbjct: 35 YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA---AAYDWTNVRHVLDVGGGK 91
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G F+ I+ P + TVL++ V
Sbjct: 92 GGFAAAIARRAPHVSATVLEMAGTVDTARS 121
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 50.1 bits (120), Expect = 4e-09
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ N ++ M+L+ A L + D + A TL+ L +R L G
Sbjct: 15 LGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEG 72
Query: 47 TKVNGQEEAYGLTASSTLL 65
+ Q T LL
Sbjct: 73 GE--KQGRPLRPTRLGMLL 89
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 48.6 bits (116), Expect = 1e-08
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 20/79 (25%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL--------------MRLLVHSGCFNK 46
+ + + M ++ A L + D I T+ L +R LV G +
Sbjct: 9 LGSLHTPMVVRTAATLRLVDHILAGA--RTVKALAARTDTRPEALLRLIRHLVAIGLLEE 66
Query: 47 TKVNGQEEAYGLTASSTLL 65
+ T LL
Sbjct: 67 DA----PGEFVPTEVGELL 81
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.97 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.97 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.71 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.66 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.64 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.62 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.61 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.61 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.51 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.5 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.44 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.33 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.32 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.3 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.27 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.27 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.26 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.25 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.25 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.23 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.22 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.19 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.16 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.15 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.11 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.11 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.11 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.1 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.07 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.01 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.99 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.97 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.91 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.86 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.79 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.75 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.7 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.7 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.67 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.57 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.53 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.51 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.48 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.46 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.45 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.45 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.41 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.41 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.37 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.37 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.36 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.33 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.27 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.27 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.22 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.19 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.19 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.1 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.1 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.08 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.99 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.87 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.85 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.77 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.6 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.56 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.52 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.5 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.36 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.29 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.11 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.95 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.69 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.62 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.56 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.53 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.14 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 95.79 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.5 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 95.37 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.26 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.84 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.72 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.48 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.18 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.46 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.53 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.39 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 81.81 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.19 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.4e-36 Score=246.52 Aligned_cols=168 Identities=45% Similarity=0.847 Sum_probs=147.0
Q ss_pred CChhchhhhhC----CCCChHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccC
Q 038208 58 LTASSTLLIKE----NPFSLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEG 133 (228)
Q Consensus 58 ~t~~~~~l~~~----~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~ 133 (228)
++|+..++.++ ...+|.+|++++++++|+.++|+++|+|+.++|+..+.|+++|...+......+.. +.+.+++
T Consensus 3 ~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~--~~~~~~~ 80 (244)
T d1fp2a2 3 LAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD--CDFVFDG 80 (244)
T ss_dssp CHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT--CHHHHTT
T ss_pred hHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh--hcccccC
Confidence 44555544421 23459999999988999999999999999999999999999999887765555443 2223788
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHH
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il 213 (228)
..+|||||||+|.++.+++++||+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+|++|.+||
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCC
Q 038208 214 KKRREAIASNGERG 227 (228)
Q Consensus 214 ~~~~~aL~pgG~~g 227 (228)
++++++|+|||..|
T Consensus 161 ~~~~~al~pgg~~~ 174 (244)
T d1fp2a2 161 KKCKEAVTNDGKRG 174 (244)
T ss_dssp HHHHHHHSGGGCCC
T ss_pred HHHHHHcCcccCCc
Confidence 99999999997655
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=2.2e-35 Score=239.29 Aligned_cols=152 Identities=32% Similarity=0.581 Sum_probs=130.4
Q ss_pred CChHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHH
Q 038208 71 FSLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRI 150 (228)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~ 150 (228)
.+|.++++++++++|+.++|.++|||+.+||+..+.|+++|...+....+.+++ .++ .+++..+|||||||+|.++.+
T Consensus 21 ~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~-~~~-~f~~~~~vlDiGGG~G~~~~~ 98 (244)
T d1fp1d2 21 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYT-GFEGISTLVDVGGGSGRNLEL 98 (244)
T ss_dssp TTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHH-HCC-TTTTCSEEEEETCTTSHHHHH
T ss_pred HHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH-hcc-cccCCcEEEEecCCCcHHHHH
Confidence 358888988888899999999999999999999999999999998888888888 887 468889999999999999999
Q ss_pred HHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 151 ISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 151 l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++++|+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+|++|.+||++++++|+|||
T Consensus 99 l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg 172 (244)
T d1fp1d2 99 IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG 172 (244)
T ss_dssp HHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999996
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.4e-33 Score=226.51 Aligned_cols=151 Identities=35% Similarity=0.589 Sum_probs=141.2
Q ss_pred ChHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHH
Q 038208 72 SLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRII 151 (228)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l 151 (228)
.|.+++++|+ ++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++ .+++ +++..+|||||||+|.++.++
T Consensus 23 ~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~-~~~~-~~~~~~vvDvGGG~G~~~~~l 99 (243)
T d1kyza2 23 HLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILE-TYTG-FEGLKSLVDVGGGTGAVINTI 99 (243)
T ss_dssp GHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HCCT-TSSCSEEEEETCTTSHHHHHH
T ss_pred HHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHH-hccc-ccCCcEEEEecCCCcHHHHHH
Confidence 4889999997 689999999999999999999999999999988877788888 8773 466789999999999999999
Q ss_pred HHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 152 SEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 152 ~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++||+++++++|+|++++.++..+|++++.+|+++++|.+|+|+++++||+|+|+++.+||++++++|+|||.
T Consensus 100 ~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~ 173 (243)
T d1kyza2 100 VSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGK 173 (243)
T ss_dssp HHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCce
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999964
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.97 E-value=4.4e-32 Score=221.53 Aligned_cols=149 Identities=25% Similarity=0.450 Sum_probs=138.7
Q ss_pred ChHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHH
Q 038208 72 SLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRII 151 (228)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l 151 (228)
.|.+.+|+|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++ .++ +++.++|||||||+|.++..+
T Consensus 24 ~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~-~~d--~~~~~~vlDvG~G~G~~~~~l 99 (256)
T d1qzza2 24 GLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPAD-AYD--WSAVRHVLDVGGGNGGMLAAI 99 (256)
T ss_dssp GHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHH-TSC--CTTCCEEEEETCTTSHHHHHH
T ss_pred HHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHh-cCC--CccCCEEEEECCCCCHHHHHH
Confidence 3888999986 579999999999999999999999999999998888899999 888 889999999999999999999
Q ss_pred HHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 152 SEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 152 ~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
++++|+++++++|+|++++.+++ .+|++++.+|+++++| ++|+|+++++||+|+|+++.++|++++++||||
T Consensus 100 ~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg 179 (256)
T d1qzza2 100 ALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG 179 (256)
T ss_dssp HHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred HHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCc
Confidence 99999999999999998877653 6899999999999877 599999999999999999999999999999999
Q ss_pred C
Q 038208 224 G 224 (228)
Q Consensus 224 G 224 (228)
|
T Consensus 180 G 180 (256)
T d1qzza2 180 G 180 (256)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.97 E-value=2e-31 Score=217.29 Aligned_cols=150 Identities=25% Similarity=0.506 Sum_probs=138.7
Q ss_pred ChHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHH
Q 038208 72 SLSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRII 151 (228)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l 151 (228)
.|++.+++|. ++|..++|+++|+|+.++|+..+.|+.+|...+....+.+++ .++ +++..+|||||||+|.++..+
T Consensus 23 ~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~d--~~~~~~VLDvGcG~G~~~~~l 98 (253)
T d1tw3a2 23 RLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAA-AYD--WTNVRHVLDVGGGKGGFAAAI 98 (253)
T ss_dssp GHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHH-HSC--CTTCSEEEEETCTTSHHHHHH
T ss_pred HHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHh-hcC--CccCCEEEEeCCCCCHHHHHH
Confidence 4889999986 678899999999999999999999999999998888889999 998 889999999999999999999
Q ss_pred HHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 152 SEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 152 ~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
++++|+++++++|+|++++.+++ .+||+++.+|+++++| +||+|+++++||+|+|+++.++|++++++||||
T Consensus 99 a~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG 178 (253)
T d1tw3a2 99 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG 178 (253)
T ss_dssp HHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred HHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence 99999999999999988877653 5899999999998766 599999999999999999999999999999999
Q ss_pred CC
Q 038208 224 GE 225 (228)
Q Consensus 224 G~ 225 (228)
|.
T Consensus 179 G~ 180 (253)
T d1tw3a2 179 GR 180 (253)
T ss_dssp EE
T ss_pred cE
Confidence 73
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.71 E-value=1.4e-17 Score=132.07 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=84.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA--FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~ 199 (228)
..+..+|||||||+|..+..+++. .|+.+++++|+ +.+++.|++ ..++++..+|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 456789999999999999999986 48899999999 999988763 5678999999977 556799999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++++..++|++++++|||||.
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~ 142 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGV 142 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEE
T ss_pred eccccChhhHHHHHHHHHHhCCCCce
Confidence 99999988889999999999999974
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=2.1e-17 Score=135.39 Aligned_cols=102 Identities=20% Similarity=0.305 Sum_probs=85.3
Q ss_pred hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C
Q 038208 118 MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F 188 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~ 188 (228)
+...+.. ..+ +++..+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .++|+++++|+.+ +
T Consensus 55 ~~~~l~~-~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~ 130 (282)
T d2o57a1 55 LASELAM-TGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 130 (282)
T ss_dssp HHHHHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHH-hcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence 3344444 344 6788999999999999999999875 678999999 888877664 5799999999988 6
Q ss_pred CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+| .||+|++..++|++++. .++|++++++|||||.
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~ 167 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGV 167 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred ccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcE
Confidence 66 39999999999999876 5799999999999974
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.66 E-value=9.3e-17 Score=127.19 Aligned_cols=98 Identities=14% Similarity=0.271 Sum_probs=82.5
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP-- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p-- 190 (228)
.+++ ..+ +.+..+|||||||+|.++..++++. .+++++|+ +.+++.|++ .++++++++|+.+ +++
T Consensus 6 ~ll~-~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 6 KLMQ-IAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHH-HHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHH-hcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 3455 444 6778999999999999999999886 47899999 888887753 5789999999987 666
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++.+++|+++|. .++|+++++.|||||.
T Consensus 81 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~ 113 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQ 113 (231)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred ccccccccccccccCCH--HHHHHHHHHhcCCCcE
Confidence 39999999999999876 5789999999999973
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=1.4e-16 Score=126.79 Aligned_cols=97 Identities=18% Similarity=0.324 Sum_probs=83.7
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--P 191 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~ 191 (228)
+++ ..+ +++..+|||||||+|.++..++++. .+++++|+ +.+++.|++ .+++.++++|+.+ +++ .
T Consensus 8 l~~-~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 8 MIK-TAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHH-HHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHH-HhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 345 566 7888999999999999999999986 47899999 888887764 4789999999987 666 3
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..++|+++|. ..+|+++++.|||||.
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~ 114 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQDGR 114 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEE
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCCCcE
Confidence 9999999999999876 6899999999999974
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.5e-16 Score=127.58 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p-- 190 (228)
.+.+ .+. +.+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ .+||+|+.+|+.+..+
T Consensus 24 ~l~~-~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 24 TLGR-VLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHH-HTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHH-HcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 3444 554 67789999999999999999998875 79999999 888877653 5789999999987444
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|+++|. .++|+++++.|||||.
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~ 132 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGI 132 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEE
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcE
Confidence 49999999999999876 5899999999999974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=5.1e-16 Score=122.03 Aligned_cols=93 Identities=19% Similarity=0.364 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
+.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++..++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 456689999999999999999986 568999999 889988764 5678999999987 665 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++++..++|+++.+.|||||.
T Consensus 113 ~~~~~~d~~~~l~~i~~~LkpgG~ 136 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKPSGK 136 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEE
T ss_pred hhCChhHHHHHHHHHHHHcCcCcE
Confidence 999988888999999999999973
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.62 E-value=3e-16 Score=126.75 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=81.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++++++ +++++|. +.+++.|++ ..+++++++|+.+ +++ .||+|++.+++|
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence 346789999999999999999887755 7899999 889988764 4668999999977 444 399999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|++..++|++++++|+|||.
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~ 192 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGY 192 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcE
Confidence 99999999999999999999973
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.8e-16 Score=125.35 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=80.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..++++.+. +++++|+ +.+++.|++ ..+++|+++|+.+ +++ .||+|++..++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 45679999999999999999877753 7999999 899987764 3578999999987 444 39999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++++..++|+++++.|+|||.
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~ 161 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGI 161 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ccchhhhhhhHHHHHHHhcCCcce
Confidence 999999888999999999999973
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.2e-15 Score=122.13 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=79.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCC-ceEeeeh-hhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVPP-ADAFLFK-LVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p~-~D~v~~~-~vl 201 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.|++ ..+++++++|+.+ ++++ ||+|++. .++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhh
Confidence 3456799999999999999999974 57999999 889988875 4589999999987 6664 9999875 688
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++.++..++|+++++.|+|||.
T Consensus 117 ~~~~~~~~~~~L~~~~~~LkpgG~ 140 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKPGGV 140 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred hcCChHHHHHHHHHHHHHcCCCcE
Confidence 888888889999999999999974
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=1.3e-15 Score=118.19 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=80.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p-~~D~v~~~~vl 201 (228)
+..+.+|||||||+|..+..++++. .+++++|+ +.+++.+++ .+++++...|+.+ +.+ .||+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 4456799999999999999999984 57999999 788886653 4689999999987 333 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++++..++|++++++|+|||.
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~ 129 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGY 129 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEE
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999999973
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.58 E-value=7.2e-16 Score=126.19 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=81.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~vl 201 (228)
+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++|+.+|+.+ +++ .||+|++++++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 567889999999999999999999875 78999999 888887764 4479999999987 555 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++. ..+|+++++.|||||.
T Consensus 105 ~~~~d~--~~~l~~~~~~LkpgG~ 126 (281)
T d2gh1a1 105 LHMTTP--ETMLQKMIHSVKKGGK 126 (281)
T ss_dssp GGCSSH--HHHHHHHHHTEEEEEE
T ss_pred hcCCCH--HHHHHHHHHHcCcCcE
Confidence 999887 4799999999999973
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.54 E-value=5.3e-15 Score=113.58 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCCCCC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------------------TDNLKYIAGDMFQFVP- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------------------~~rv~~~~gD~~~~~p- 190 (228)
+++..+|||||||+|..+..++++ +.+++++|+ +.+++.+++ ...+++..+|+++..+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 567889999999999999999998 689999999 888887753 3557899999987322
Q ss_pred ---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 ---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|+.+.++|+.+++.....++++++.|||||.
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~ 133 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcE
Confidence 49999999999999999999999999999999973
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=1.1e-14 Score=116.51 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeeh-hhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFK-LVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~-~vlh 202 (228)
....+|||||||+|.++..+++++ .+++++|+ +.+++.|++ ..+++++++|+.+ +++ .||+|++. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 346799999999999999999985 47999999 889988764 4589999999987 445 49998864 6776
Q ss_pred CC-ChhHHHHHHHHHHHHhccCCC
Q 038208 203 GL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ +.++..++|+++++.|+|||.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~ 137 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGV 137 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeE
Confidence 66 567888999999999999973
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.6e-14 Score=114.74 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=75.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeee-hhhhcCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLF-KLVFHGLG 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~-~~vlh~~~ 205 (228)
.++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++.....++.+|+.+ +++ .||+|++ ..++|+++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 456789999999999999999886 568999999 8999988763334467788877 665 3999986 57999998
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
|. .++|+++++.|||||.
T Consensus 118 d~--~~~l~~i~r~Lk~gG~ 135 (246)
T d2avna1 118 NK--DKAFSEIRRVLVPDGL 135 (246)
T ss_dssp CH--HHHHHHHHHHEEEEEE
T ss_pred hH--HHHHHHHHhhcCcCcE
Confidence 87 4689999999999974
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=2e-14 Score=111.90 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=72.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~ 207 (228)
....+|||||||+|.++..+. +++++|+ |.+++.+++ .+++++++|+.+ +++ .||+|++.++||+++|.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence 345689999999999988874 3589999 889988774 479999999987 565 39999999999999875
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
.++|++++++|+|||.
T Consensus 108 --~~~l~~~~~~L~pgG~ 123 (208)
T d1vlma_ 108 --ERALKEAYRILKKGGY 123 (208)
T ss_dssp --HHHHHHHHHHEEEEEE
T ss_pred --ccchhhhhhcCCCCce
Confidence 5899999999999973
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.50 E-value=1.5e-14 Score=114.32 Aligned_cols=91 Identities=22% Similarity=0.426 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLG 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~ 205 (228)
+.+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.. +.+ .||+|++.++||+.+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 4567799999999999999999875 46999999 889988875 5689999999876 344 499999999999998
Q ss_pred hhHHHHHHHHHH-HHhccCCC
Q 038208 206 DEDGLKILKKRR-EAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~-~aL~pgG~ 225 (228)
|+ ..+|++++ +.|+|||.
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~ 114 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGR 114 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEE
T ss_pred CH--HHHHHHHHHHhcCCCce
Confidence 77 67899998 67999973
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=4.1e-14 Score=113.62 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=78.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-C--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FV-P--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~-p--~~D~v~~~ 198 (228)
.++..+|||||||+|..+..+++..+ .+++++|+ +.+++.|++ ..++.+..+|+.. ++ + .||+|++.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 35678999999999999999988743 47999999 888887753 4579999999976 33 2 39999999
Q ss_pred hhhcCC--ChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGL--GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~--~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|+. +.++...+|+++++.|+|||.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~ 129 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGY 129 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCE
Confidence 999986 446778999999999999974
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.46 E-value=1.8e-14 Score=99.54 Aligned_cols=67 Identities=45% Similarity=0.774 Sum_probs=58.3
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCCCCcCHHH-----------------HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE-----------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e-----------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
++||+.+++|++|+|+||||+|+.+++|+|++| +||+|++.|+|++... .+++|++|+.|+
T Consensus 17 ~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~--~~~~Y~lt~~s~ 94 (101)
T d1fp2a1 17 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASE 94 (101)
T ss_dssp HTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHH
T ss_pred HHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC--CCCeEecCHHHH
Confidence 479999999999999999999987668999888 8999999999976431 157899999999
Q ss_pred hhhhCC
Q 038208 64 LLIKEN 69 (228)
Q Consensus 64 ~l~~~~ 69 (228)
+|++++
T Consensus 95 ~Lv~~~ 100 (101)
T d1fp2a1 95 LLVRGS 100 (101)
T ss_dssp TTSTTS
T ss_pred HhhcCC
Confidence 998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=4.2e-14 Score=114.73 Aligned_cols=85 Identities=14% Similarity=0.259 Sum_probs=74.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d 206 (228)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|+..+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4678999999999999999999999999999999 888888775 6899999999987 666 3999999888775
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
++++++.|||||.
T Consensus 160 ------~~e~~rvLkpgG~ 172 (268)
T d1p91a_ 160 ------AEELARVVKPGGW 172 (268)
T ss_dssp ------HHHHHHHEEEEEE
T ss_pred ------HHHHHHHhCCCcE
Confidence 4678899999974
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=8.6e-14 Score=110.19 Aligned_cols=93 Identities=6% Similarity=-0.031 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------TDNLKYIAGDMF 186 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------------------~~rv~~~~gD~~ 186 (228)
.....+|||+|||+|..+..|+++ +.+++++|+ |.+|+.+++ ..+++++++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456789999999999999999997 678999999 888865421 468999999998
Q ss_pred C--CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 187 Q--FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 187 ~--~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ +.+ .+|+|+.+.++|++++++....+++++++|||||.
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~ 163 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ 163 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence 7 222 39999999999999999999999999999999973
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.4e-13 Score=112.29 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=83.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||.|.++..++++++ .+++++|+ +..++.+++ ..++.+...|+.+....
T Consensus 42 ~~~~~-~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~ 117 (280)
T d2fk8a1 42 DLNLD-KLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 117 (280)
T ss_dssp HHHHT-TSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHH-HcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence 34555 555 67889999999999999999988874 69999999 666665442 56788888887653335
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.|++..++++++++.-..+|+++++.|||||.
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~ 151 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGR 151 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCE
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCce
Confidence 9999999999999988888999999999999974
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=1.4e-13 Score=106.22 Aligned_cols=98 Identities=16% Similarity=0.307 Sum_probs=79.4
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCCC--
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~p-- 190 (228)
+++ .++ ..+..+|||||||+|.++..+++.+| +++++|+ +.+++.+++ ..++++..+|++++++
T Consensus 44 Li~-~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 44 LVE-NVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHH-HCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHH-hCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 445 454 45678999999999999999999877 5788898 888877653 4579999999988655
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++.-++|.. .+...++++++.+.|+|||.
T Consensus 119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~ 152 (194)
T d1dusa_ 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEE
T ss_pred CceEEEEcccEEec-chhhhhHHHHHHHhcCcCcE
Confidence 49999998888754 45557899999999999974
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.42 E-value=9.2e-14 Score=93.08 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=57.4
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
.||+.+++|++|+++||||+|.. +|+|++| +||+|+++|+|++.+ ++.|++|+.|+.|++
T Consensus 10 ~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~----~~~y~lt~~s~~L~~ 83 (85)
T d1tw3a1 10 GSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA----PGEFVPTEVGELLAD 83 (85)
T ss_dssp HCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEECTTGGGGST
T ss_pred HchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecC----CCeEecCHHHHHhhc
Confidence 57889999999999999999986 7999998 999999999999987 789999999999988
Q ss_pred CC
Q 038208 68 EN 69 (228)
Q Consensus 68 ~~ 69 (228)
|+
T Consensus 84 Dh 85 (85)
T d1tw3a1 84 DH 85 (85)
T ss_dssp TS
T ss_pred CC
Confidence 75
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.37 E-value=5.3e-13 Score=103.83 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=74.3
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CceEeeehhhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP--PADAFLFKLVF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p--~~D~v~~~~vl 201 (228)
...|||||||+|.++..+++.+|+..++++|+ +..+..+.+ .++|.++.+|+.. .++ .+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 45899999999999999999999999999998 776665432 6799999999865 245 38999888877
Q ss_pred cCCChhH------HHHHHHHHHHHhccCCC
Q 038208 202 HGLGDED------GLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~------~~~il~~~~~aL~pgG~ 225 (228)
..+.... ...+|+.+++.|||||+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~ 139 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGS 139 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcE
Confidence 6443332 14799999999999974
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.1e-12 Score=107.02 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=83.0
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||.|..+..+++++ +++++++++ +..++.++ ..+++++..+|+...-..
T Consensus 52 ~~~~~-~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 52 DLALG-KLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHT-TTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHH-HcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 44455 555 6788999999999999999999998 589999999 55554433 268999999998653235
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.|++..++.++..+.-..+++++++.|||||.
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~ 161 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 161 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence 9999999999888877667899999999999974
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.9e-12 Score=105.91 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=81.3
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||.|.++..++++++ .+++++++ ++.++.++ ...++++...|+..+-..
T Consensus 51 ~~~~~-~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 51 KLALD-KLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHH-hcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 44555 555 77889999999999999999999985 69999999 55554433 267899999998543335
Q ss_pred ceEeeehhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
||.|++..++.++++ +.-..+++++++.|||||.
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~ 167 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 167 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence 999999999988876 3347899999999999973
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=1.1e-12 Score=103.81 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=76.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCCC--C--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP----ETDNLKYIAGDMFQFV--P--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----~~~rv~~~~gD~~~~~--p--~~D~v~~~~vl 201 (228)
+.+..+|||||||+|.++..+++..|+.+++++|+ |.+++.++ ..+++..+.+|...+. . .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 56788999999999999999999999999999999 88877654 3678889999887732 2 26777777778
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++.+ ...+++++++.|||||.
T Consensus 152 ~~~~~--~~~~l~~~~r~LKpgG~ 173 (230)
T d1g8sa_ 152 AQPNQ--AEILIKNAKWFLKKGGY 173 (230)
T ss_dssp CSTTH--HHHHHHHHHHHEEEEEE
T ss_pred cchHH--HHHHHHHHHHhcccCce
Confidence 76644 47789999999999974
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.9e-13 Score=106.43 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=71.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CceEee----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ---FVP--PADAFL---- 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~---~~p--~~D~v~---- 196 (228)
....+|||||||+|..+..++++.| .+++++|+ |.+++.+++ ..++.++.+|... +++ .||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4567999999999999999998765 47999999 899988764 5678888887643 455 366665
Q ss_pred -ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 -FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 -~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
....++++.+. ..+++++++.|||||+
T Consensus 131 ~~~~~~~~~~~~--~~~~~~~~r~LkpGG~ 158 (229)
T d1zx0a1 131 PLSEETWHTHQF--NFIKNHAFRLLKPGGV 158 (229)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEEEEE
T ss_pred ccccccccccCH--HHHHHHHHHHcCCCcE
Confidence 56677777654 6799999999999974
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.30 E-value=1.2e-12 Score=100.38 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=72.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++.+ .+++++|+ |.+++.+++ .+||+++.+|+.+ +.+.||+|++..
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 5678899999999999999999875 47999999 899988764 4799999999876 234699999877
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..+++ ..+++.+.+.|||||
T Consensus 109 ~~~~~-----~~~~~~~~~~LkpgG 128 (186)
T d1l3ia_ 109 SGGEL-----QEILRIIKDKLKPGG 128 (186)
T ss_dssp CTTCH-----HHHHHHHHHTEEEEE
T ss_pred ccccc-----hHHHHHHHHHhCcCC
Confidence 65543 468999999999997
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.30 E-value=2.1e-12 Score=100.75 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=73.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC-CC--CceEe-eehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQF-VP--PADAF-LFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~-~p--~~D~v-~~~~vl 201 (228)
+.+..+|||||||+|..+..+++..|+.+++++|+ |.+++.+++ ..++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 56789999999999999999999999999999999 899987754 67999999998773 32 22222 222344
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++.+ ...+++++++.|||||.
T Consensus 134 ~~~~~--~~~~l~~~~~~LkpgG~ 155 (209)
T d1nt2a_ 134 AQKNQ--IEILKANAEFFLKEKGE 155 (209)
T ss_dssp CSTTH--HHHHHHHHHHHEEEEEE
T ss_pred cChhh--HHHHHHHHHHHhccCCe
Confidence 44443 36889999999999974
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.3e-12 Score=106.91 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=72.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC---Cce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP---PAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p---~~D 193 (228)
..+..+|||||||+|.++..++++ +.+++++|+ +.+++.|++ ..+..+...|+.. .+| .||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 345679999999999999999997 578999999 899887753 1345566667654 233 499
Q ss_pred Eeee-hhhhcCCCh-----hHHHHHHHHHHHHhccCCC
Q 038208 194 AFLF-KLVFHGLGD-----EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~-~~vlh~~~d-----~~~~~il~~~~~aL~pgG~ 225 (228)
+|++ ..+++++++ ++...+|+++++.|||||.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 169 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 169 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcE
Confidence 8875 457877754 4678899999999999974
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=3.4e-12 Score=102.79 Aligned_cols=115 Identities=14% Similarity=0.266 Sum_probs=88.7
Q ss_pred CccHHHHHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCC
Q 038208 100 NPGINQRFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~ 173 (228)
.|.. ..|...|...++.. +..++. .++ ..+..+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|+
T Consensus 63 ~pt~-~~~~~~~~r~tqiiypkD~s~Ii~-~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar 138 (264)
T d1i9ga_ 63 RPLL-VDYVMSMPRGPQVIYPKDAAQIVH-EGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 138 (264)
T ss_dssp CCCH-HHHHTTSCSCSCCCCHHHHHHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred CCCH-HHHHhhccCCccccchHHHHHHHH-HhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHH
Confidence 3443 33555666655543 334455 555 678899999999999999999998 69999999999 88888776
Q ss_pred C---------CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 174 E---------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 174 ~---------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ .++++++.+|+.+ +++ .||.|++ |.+++ ...+.+++++|||||.
T Consensus 139 ~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~ 195 (264)
T d1i9ga_ 139 RNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGV 195 (264)
T ss_dssp HHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEE
T ss_pred HhhhhhccCCCceEEEEecccccccccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCE
Confidence 4 5799999999987 566 3999875 46665 4679999999999963
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.27 E-value=8.3e-12 Score=96.96 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p--~~D~v~~~~v 200 (228)
....|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++.++.+|+.. .+| .+|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 346899999999999999999999999999998 766665532 5789999999865 245 3788876654
Q ss_pred hcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
-. |+... ...+|+.+++.|+|||.
T Consensus 111 dP-w~K~~h~krRl~~~~~l~~~~~~LkpgG~ 141 (204)
T d1yzha1 111 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGE 141 (204)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred cc-ccchhhhhhhhhHHHHHHHHHHhCCCCcE
Confidence 43 54432 25789999999999974
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.26 E-value=4.4e-12 Score=85.80 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=54.8
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
++||+.+++|++|+|+||||+|.. +|+|++| +||+|+++|+|++.+. +.+.|++|+.+..|+
T Consensus 15 ~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d--~~~~~~~t~~g~lL~ 90 (92)
T d1qzza1 15 LGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEK--QGRPLRPTRLGMLLA 90 (92)
T ss_dssp TTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC---CCCCEECTTGGGGS
T ss_pred HHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecC--CCceecccHHHHhcc
Confidence 478999999999999999999987 7999998 9999999999998751 134688899998886
Q ss_pred h
Q 038208 67 K 67 (228)
Q Consensus 67 ~ 67 (228)
+
T Consensus 91 d 91 (92)
T d1qzza1 91 D 91 (92)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=5.5e-12 Score=98.69 Aligned_cols=93 Identities=14% Similarity=0.280 Sum_probs=76.3
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--- 190 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--- 190 (228)
+++ .+. +.+..+|||||||+|.++..+++.. |+.+++.+|. +.+++.+++ ..++.++.+|..+..+
T Consensus 67 ~l~-~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 67 FME-WVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHH-hhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 455 554 6788999999999999999999875 6789999998 888887764 6789999999877333
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++...+++.+++ +.+.|||||.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~LkpGG~ 170 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKEGGR 170 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCCCcE
Confidence 49999999999988753 4677999973
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.6e-12 Score=104.86 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------TDNLKYIAGD 184 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------~~rv~~~~gD 184 (228)
.+++ .+. +.+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|++ ..+|+++++|
T Consensus 142 ~~~~-~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 142 QMID-EIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHH-HSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHH-HcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 3444 444 56788999999999999999999999889999999 777766542 4689999999
Q ss_pred CCC-CCC----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 185 MFQ-FVP----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 185 ~~~-~~p----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+ ++. .+|+|++...+| + ++....|+++++.|||||.
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~ 261 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGR 261 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCE
T ss_pred ccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcE
Confidence 987 433 368888766554 3 3346789999999999963
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.2e-12 Score=103.72 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=65.8
Q ss_pred CeEEEecCCCcHHHHHHHH----HCCCC--eEEEeec-hHHHhcCCC-------CCCeEE--EeCCCC-------CCCC-
Q 038208 135 GSLVDVGGGNGSFSRIISE----AFPGI--KCTVLDL-PHVVANLPE-------TDNLKY--IAGDMF-------QFVP- 190 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~----~~p~~--~~~~~Dl-p~~i~~a~~-------~~rv~~--~~gD~~-------~~~p- 190 (228)
.+|||||||+|.++..|++ ++|+. +++++|. +.+++.+++ ..++.+ ...++. .+.+
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 4799999999998777655 46654 5789998 778776642 234443 444332 1222
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++.++||+++|. ..+|+++++.|+|||.
T Consensus 122 ~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~ 155 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAK 155 (280)
T ss_dssp CCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEE
T ss_pred CceeEEEEccceecCCCH--HHHHHHHHhhCCCCCE
Confidence 39999999999999876 5899999999999974
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.22 E-value=6.1e-12 Score=100.56 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=77.9
Q ss_pred HHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 038208 106 RFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE----- 174 (228)
Q Consensus 106 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----- 174 (228)
.|...|...++.. +..++. .++ +.+..+|||+|||+|.++..+++. .|+.+++.+|. ++.++.|++
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~-~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~ 133 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIM-RCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133 (250)
T ss_dssp GHHHHC-------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred HHHhhCCCCCcccCHHHHHHHHH-HcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 3555555444432 223344 444 667899999999999999999987 68899999999 788877663
Q ss_pred --CCCeEEEeCCCCCCCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 --TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 --~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|++..+|+.+.++ .||.|++ +.++. ...|++++++|||||.
T Consensus 134 ~~~~nv~~~~~Di~~~~~~~~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~ 181 (250)
T d1yb2a1 134 YDIGNVRTSRSDIADFISDQMYDAVIA-----DIPDP--WNHVQKIASMMKPGSV 181 (250)
T ss_dssp SCCTTEEEECSCTTTCCCSCCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEE
T ss_pred cCCCceEEEEeeeecccccceeeeeee-----cCCch--HHHHHHHHHhcCCCce
Confidence 5789999999987655 3999875 45554 3679999999999974
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.2e-11 Score=99.22 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=70.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..+++. ..+++++|+ |.+++.+++ .-+++++.+|+....+ .||+|+++...
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~- 194 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA- 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH-
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccc-
Confidence 356789999999999999988875 468999999 889988774 4467889999876444 59999886443
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++.+++.|||||.
T Consensus 195 ----~~l~~l~~~~~~~LkpGG~ 213 (254)
T d2nxca1 195 ----ELHAALAPRYREALVPGGR 213 (254)
T ss_dssp ----HHHHHHHHHHHHHEEEEEE
T ss_pred ----ccHHHHHHHHHHhcCCCcE
Confidence 3346789999999999963
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.16 E-value=2.1e-11 Score=84.16 Aligned_cols=69 Identities=28% Similarity=0.367 Sum_probs=56.1
Q ss_pred CchhhHHHHHHHHHHcChhhHhhhCC--CCcCHHH------------------HHHHHHhCCceeecccCC----CCCeE
Q 038208 1 MFNHLSSMSLKCAIELSIADIIHCHG--RAITLSE------------------LMRLLVHSGCFNKTKVNG----QEEAY 56 (228)
Q Consensus 1 ~~g~~~~~~L~~a~~lglfd~L~~~~--~p~t~~e------------------ll~~L~~~g~l~~~~~~~----~~~~~ 56 (228)
++|++.+++|++|+||||||+|...| .|+|+.| +||.|++.|+|....... ....|
T Consensus 15 ~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y 94 (107)
T d1kyza1 15 ASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLY 94 (107)
T ss_dssp HTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE
T ss_pred HHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEE
Confidence 36899999999999999999999865 4778777 999999999997543211 12369
Q ss_pred eCChhchhhhhCC
Q 038208 57 GLTASSTLLIKEN 69 (228)
Q Consensus 57 ~~t~~~~~l~~~~ 69 (228)
.+||.|++|+++.
T Consensus 95 ~LTpvsk~Lv~de 107 (107)
T d1kyza1 95 GLATVAKYLVKNE 107 (107)
T ss_dssp EECHHHHHHSCCT
T ss_pred ecchhHHhhcCCC
Confidence 9999999998763
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.5e-11 Score=97.28 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=75.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhh-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVF- 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vl- 201 (228)
.+..+|||+|||+|..+..+++++|+.+++++|+ +..++.|++ ..||+++.+|++++++ .||+|+++-..
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 888887764 4689999999999776 39999886321
Q ss_pred ------------cCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 202 ------------HGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 ------------h~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
.+-|. +...++++++.+.|+|||.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~ 232 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF 232 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCE
Confidence 11110 3346788888899999964
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=4.2e-11 Score=82.93 Aligned_cols=68 Identities=26% Similarity=0.375 Sum_probs=55.8
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCC---CcCHHH--------------------HHHHHHhCCceeecccCC----CCC
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGR---AITLSE--------------------LMRLLVHSGCFNKTKVNG----QEE 54 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~---p~t~~e--------------------ll~~L~~~g~l~~~~~~~----~~~ 54 (228)
++|..+++|++|+||||||+|...|+ ++|++| +||.|++.|+|....... ...
T Consensus 15 ~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~ 94 (110)
T d1fp1d1 15 TNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAER 94 (110)
T ss_dssp HTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEE
T ss_pred HhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeee
Confidence 67899999999999999999998653 489888 999999999997543211 123
Q ss_pred eEeCChhchhhhhCC
Q 038208 55 AYGLTASSTLLIKEN 69 (228)
Q Consensus 55 ~~~~t~~~~~l~~~~ 69 (228)
.|.+||.+++|+++.
T Consensus 95 ~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 95 VYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEECTTGGGGSTTC
T ss_pred EEecchhhHhhcCCC
Confidence 699999999999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=5.3e-11 Score=98.29 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP-------ETDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-------~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
+..+|||||||+|.++..+++..+ .+++++|..+....++ ..++|+++.+|+.+ +.| .+|+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 567999999999999998888754 4799999844333322 26889999999988 555 499999888777
Q ss_pred CCCh-hHHHHHHHHHHHHhccCCC
Q 038208 203 GLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
.... .....++..+.+.|+|||.
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ 135 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGL 135 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeE
Confidence 6544 3567899999999999973
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=4e-11 Score=96.69 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=86.3
Q ss_pred CccHHHHHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCC
Q 038208 100 NPGINQRFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~ 173 (228)
.|... .|...|...++.. +..++. .++ +.+..+|||+|||+|.++..+++.. |+.+++.+|. |++++.|+
T Consensus 70 ~p~~~-d~~~~~~r~~qiiypkd~~~Ii~-~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~ 145 (266)
T d1o54a_ 70 IPSLI-DEIMNMKRRTQIVYPKDSSFIAM-MLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 145 (266)
T ss_dssp CCCHH-HHHHTCCC-CCCCCHHHHHHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH
T ss_pred CCCHH-HHHhhccCCccccchHHHHHHHH-hhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 35443 3555665555432 234455 555 6788999999999999999999985 8899999999 88888876
Q ss_pred C-------CCCeEEEeCCCCCCCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 174 E-------TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 174 ~-------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ .+++.+..+|+...++ .+|.|+ ++.++. ..+|+++.++|||||.
T Consensus 146 ~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~ 199 (266)
T d1o54a_ 146 SNLTKWGLIERVTIKVRDISEGFDEKDVDALF-----LDVPDP--WNYIDKCWEALKGGGR 199 (266)
T ss_dssp HHHHHTTCGGGEEEECCCGGGCCSCCSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEE
T ss_pred HHHHHhccccCcEEEeccccccccccceeeeE-----ecCCCH--HHHHHHHHhhcCCCCE
Confidence 4 5789999999866544 477764 467766 4689999999999964
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=8e-11 Score=97.68 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=72.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..++++. ..+++++|..+++..+++ .++++++.+|+.+ ++| .+|+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 356899999999999998888764 348999999655554432 6789999999987 666 39999988777
Q ss_pred cCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
|.... .....++....+.|||||.
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ 140 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGL 140 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeE
Confidence 66543 4456788888999999974
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=8.8e-11 Score=92.35 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC---CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVP---PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p---~~D~ 194 (228)
+.+..+|||||||+|..+..+++. .|..+++++|+ +++++.+++ ..+++++.+|.....+ .||+
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~ 153 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 153 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence 466789999999999999999885 57889999999 888887653 4789999999987333 4999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++...+++.+++ +.+.|||||.
T Consensus 154 I~~~~~~~~ip~~--------l~~~LkpGG~ 176 (224)
T d1i1na_ 154 IHVGAAAPVVPQA--------LIDQLKPGGR 176 (224)
T ss_dssp EEECSBBSSCCHH--------HHHTEEEEEE
T ss_pred hhhhcchhhcCHH--------HHhhcCCCcE
Confidence 9999999887653 5678999963
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=1.6e-10 Score=98.00 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEE-Ee
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------TDNLKY-IA 182 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------~~rv~~-~~ 182 (228)
..+++ .+. +.+..+|||||||.|..+..+++.+|..+++++|+ +.+++.|++ ...+.+ ..
T Consensus 206 ~~Il~-~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 206 SDVYQ-QCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHH-HTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHH-HhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 33444 444 66778999999999999999999999889999999 888877653 233344 45
Q ss_pred CCCCC-C-----CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 183 GDMFQ-F-----VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 183 gD~~~-~-----~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++.. + ++.+|++++.+.+| . ++....|+++++.|||||
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGG 327 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGC 327 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTC
T ss_pred echhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCCCc
Confidence 66655 2 33588998876543 3 445788999999999996
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.3e-10 Score=94.59 Aligned_cols=115 Identities=15% Similarity=0.227 Sum_probs=85.8
Q ss_pred CccHHHHHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCC
Q 038208 100 NPGINQRFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~ 173 (228)
.|.. ..|...|...++.. +..++. .++ +.+..+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|+
T Consensus 65 ~Pt~-~d~~~~~~r~tqiiypkD~~~Il~-~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~ 140 (324)
T d2b25a1 65 RPAL-EDYVVLMKRGTAITFPKDINMILS-MMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 140 (324)
T ss_dssp CCCH-HHHHHHSCCSSCCCCHHHHHHHHH-HHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred CCCH-HHHhhccCCCCcccccccHHHHHH-HhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHH
Confidence 4543 44666777655532 344555 565 778999999999999999999997 58999999999 88777654
Q ss_pred C-----------------CCCeEEEeCCCCCC---CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 174 E-----------------TDNLKYIAGDMFQF---VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 174 ~-----------------~~rv~~~~gD~~~~---~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ .+++.+..+|+... ++ .+|.|++ |.+++ ...|.+++++|||||.
T Consensus 141 ~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~ 207 (324)
T d2b25a1 141 KNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGV 207 (324)
T ss_dssp HHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEE
T ss_pred HHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCE
Confidence 2 47899999998662 33 3899876 55554 2478999999999974
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.1e-10 Score=91.52 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=71.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP-------ETDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-------~~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..++++.+ .+++++|..+....++ ..++++++.+|+.+ +.| .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34578999999999999999998755 4899999933322222 26889999999987 555 4999999888
Q ss_pred hcCCChh-HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
.|....+ ....++....+.|+|||.
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~ 137 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGS 137 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEE
T ss_pred eeecccccccHHHHHHHHhcCCCCcE
Confidence 8776555 345667777889999963
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2e-11 Score=97.30 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=66.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCe---------------------------
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNL--------------------------- 178 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv--------------------------- 178 (228)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ...+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999999887776653 236999999 888876653 1111
Q ss_pred ----EEEeCCCCC-----CCC--CceEeeehhhhcCCC--hhHHHHHHHHHHHHhccCCC
Q 038208 179 ----KYIAGDMFQ-----FVP--PADAFLFKLVFHGLG--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 179 ----~~~~gD~~~-----~~p--~~D~v~~~~vlh~~~--d~~~~~il~~~~~aL~pgG~ 225 (228)
.....+... +.+ .||+|++..+||+.+ .++...+++++++.|||||.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~ 188 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH 188 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcE
Confidence 111112211 233 499999999999875 35668899999999999973
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.99 E-value=2.7e-10 Score=87.43 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=71.2
Q ss_pred cCCCeEEEecCCCcHH----HHHHHHHC----CCCeEEEeec-hHHHhcCCC----------------------------
Q 038208 132 EGLGSLVDVGGGNGSF----SRIISEAF----PGIKCTVLDL-PHVVANLPE---------------------------- 174 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~----~~~l~~~~----p~~~~~~~Dl-p~~i~~a~~---------------------------- 174 (228)
.+.-+|+++|||+|.- ++.+.+.. .++++++.|+ +.+++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3456999999999983 33344432 2457999999 788876541
Q ss_pred ---------CCCeEEEeCCCCCC-C---CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ---------TDNLKYIAGDMFQF-V---PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ---------~~rv~~~~gD~~~~-~---p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...+.+...+...+ . .++|+|++++||++++++...+++++++++|+|||.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~ 166 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL 166 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcE
Confidence 13356677776652 2 249999999999999999999999999999999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.3e-10 Score=93.53 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=67.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC----------------------------
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDN---------------------------- 177 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~r---------------------------- 177 (228)
.+..+|||||||+|.+....+.+... +++++|. +.+++.+++ ...
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 35689999999999887655544433 7999999 888876642 101
Q ss_pred ---eEEEeCCCCCC-------C-C-CceEeeehhhhcCCCh--hHHHHHHHHHHHHhccCCC
Q 038208 178 ---LKYIAGDMFQF-------V-P-PADAFLFKLVFHGLGD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 178 ---v~~~~gD~~~~-------~-p-~~D~v~~~~vlh~~~d--~~~~~il~~~~~aL~pgG~ 225 (228)
-.....|+.++ . + .+|+|++.++||+.++ ++-.++|+++++.|||||.
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~ 193 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 193 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence 12344566542 1 1 3999999999998752 4678999999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.91 E-value=1.2e-09 Score=85.60 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=72.1
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC---Cce
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQFVP---PAD 193 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~~p---~~D 193 (228)
+++ .++ +.+..+|||||||+|.++..+++.. .+++.+|. +..++.+++ ..+++++.+|.....| .||
T Consensus 62 ml~-~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 62 MLD-ELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHH-Hhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 455 555 6788999999999999999888874 57899998 777776653 6899999999877433 499
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++...+++.++. +.+.|+|||.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~GGr 160 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKEGGI 160 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCCCCE
Confidence 99998888877643 4567999963
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=2e-09 Score=84.47 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC--CC----CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQF--VP----PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~--~p----~~D~v~~~ 198 (228)
+.+..+|||+|||+|.++..+++.. |+.+++++|+ |.+++.++. ..++..+.+|...+ ++ .+|+++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 5678999999999999999999985 8899999999 888876643 56788888888652 22 3666654
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++++ ++...+++++++.|||||.
T Consensus 150 -d~~~~--~~~~~~l~~~~~~LkpgG~ 173 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKRGGY 173 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEEEEE
T ss_pred -Ecccc--chHHHHHHHHHHhcccCCe
Confidence 33333 3457789999999999973
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.79 E-value=3.9e-09 Score=82.10 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=72.6
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---P 191 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~ 191 (228)
+++ .++ +.+..+|||||||+|..+..+++.. +.+++.+|. +++++.+++ .++++++++|..+-.| .
T Consensus 70 ml~-~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 70 MLE-IAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHH-HHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHH-hhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 455 555 6788999999999999999888764 456888988 788877764 6899999999987433 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
||.|++.-.+...|+. +.+.|+|||
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gG 170 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGG 170 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCC
Confidence 9999999988877654 456789996
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.75 E-value=7.9e-09 Score=80.81 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=69.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH------CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA------FPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~------~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p-- 190 (228)
+.+..+|||||||+|.++..+++. ++..+++.+|. +++++.+++ ..+|.+..+|..+..+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 567889999999999999888775 35568999998 787776653 4689999999987333
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.||.|++...+...|+. +.+.|+|||
T Consensus 158 ~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG 184 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTPTE--------LINQLASGG 184 (223)
T ss_dssp CSEEEEEECSCBSSCCHH--------HHHTEEEEE
T ss_pred cceeeEEEEeechhchHH--------HHHhcCCCc
Confidence 49999999999877753 567899996
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=5e-09 Score=83.86 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=69.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~v 200 (228)
..+..+|||+|||+|.++..++++ +..+++++|+ |..++.+++ .++|+++.+|.++-.+ .||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 456889999999999999999987 4578999999 888876653 5789999999987333 3998887422
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+..+|..+.+.|+|||.
T Consensus 184 ------~~~~~~l~~a~~~l~~gG~ 202 (260)
T d2frna1 184 ------VRTHEFIPKALSIAKDGAI 202 (260)
T ss_dssp ------SSGGGGHHHHHHHEEEEEE
T ss_pred ------CchHHHHHHHHhhcCCCCE
Confidence 1234678888999999974
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=8.9e-09 Score=78.65 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=76.4
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-----
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ----- 187 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~----- 187 (228)
..++++ .+. ..+..++||++||+|.++..|++++|+.+++++|. |++++.+++ .+|++++.++|.+
T Consensus 12 l~evi~-~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 12 VREVIE-FLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp HHHHHH-HHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHH-hhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 445565 554 45678999999999999999999999999999999 899987764 6799999999865
Q ss_pred -CC--CCceEeee-----hhhhcCCC--hhHHHHHHHHHHHHhccCC
Q 038208 188 -FV--PPADAFLF-----KLVFHGLG--DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 188 -~~--p~~D~v~~-----~~vlh~~~--d~~~~~il~~~~~aL~pgG 224 (228)
.+ ..+|.|++ ++-|-.-. -......|..+.+.|+|||
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG 135 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGG 135 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEE
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCC
Confidence 12 24676654 33332111 1234577888889999986
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.67 E-value=1.6e-08 Score=77.38 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
...+|||+|||+|.++..++...+ .+++++|+ +.+++.+++ ..+++++.+|+.+....||+|+++=.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence 468999999999999988777654 47999999 888888776 67899999999663335999988643
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=1.1e-08 Score=83.83 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC---CC-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQF---VP-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~---~p-~~D~ 194 (228)
.+++++||.||+|.|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|..+- .+ .||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 35788999999999999999999888889999999 888876652 67999999999772 33 4999
Q ss_pred eeehhh--hcCC-Ch--hHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLV--FHGL-GD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~v--lh~~-~d--~~~~~il~~~~~aL~pgG~ 225 (228)
|++-.. ...- +. --...+++.+++.|+|||+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gv 190 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGV 190 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCce
Confidence 985331 1111 11 1125789999999999985
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.53 E-value=2.6e-08 Score=73.11 Aligned_cols=88 Identities=8% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--C--CCceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF--V--PPADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~--~--p~~D~v~~~~v 200 (228)
...+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|..+. . ..||+|++--.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5789999999999999999988664 8999999 777765543 57899999998762 2 24999987422
Q ss_pred hcCCChhHHHHHHHHHHH--HhccCC
Q 038208 201 FHGLGDEDGLKILKKRRE--AIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~--aL~pgG 224 (228)
+.......+|..+.. .|+|||
T Consensus 93 ---y~~~~~~~~l~~i~~~~~L~~~g 115 (152)
T d2esra1 93 ---YAKETIVATIEALAAKNLLSEQV 115 (152)
T ss_dssp ---SHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---hccchHHHHHHHHHHCCCcCCCe
Confidence 123444566666654 477775
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=1.2e-07 Score=72.76 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
...+|||+|||+|.++.+++.+. ..+++++|+ +.+++.+++ ..+++++.+|..+....||+|++.-..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 45799999999999999888764 358999999 787776653 5688999999876434599998765543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=3.8e-08 Score=79.84 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v 195 (228)
.+++++||-||+|.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|..+- .+ .||+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 35789999999999999999999777889999999 888887764 58999999998762 23 49999
Q ss_pred eehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
++-..-..-... -...+++.+++.|+|||+
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi 199 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGV 199 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEE
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcE
Confidence 864322111111 125789999999999985
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=5e-08 Score=78.43 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=73.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p-~~D~v 195 (228)
..++++||-||+|.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 35688999999999999999998877889999999 888887653 6799999999876 223 49999
Q ss_pred eehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
++-..=..-+.. -...+++.+++.|+|||+
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv 184 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGI 184 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEE
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCce
Confidence 855321111111 135789999999999985
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2e-07 Score=73.94 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----C---C--CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF----V---P--PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~----~---p--~~D~v 195 (228)
...++||||||+|..+..+++++|+.+++++|+ +..++.|++ .+|+.++..+..+. + . .||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 456999999999999999999999999999999 888887764 67899887655432 1 1 39999
Q ss_pred eehhhhcC
Q 038208 196 LFKLVFHG 203 (228)
Q Consensus 196 ~~~~vlh~ 203 (228)
+++=..+.
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 88877764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.7e-08 Score=78.48 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p-~~D~v 195 (228)
.+.+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 35788999999999999999998777889999999 899988763 6899999999876 223 49999
Q ss_pred eehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
++-. .+..... -...+++.+++.|+|||+
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi 187 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGV 187 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCe
Confidence 8643 2222211 123579999999999985
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.41 E-value=7.7e-08 Score=77.45 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=70.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCC---CCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------TDNLKYIAGDMFQ---FVP 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------~~rv~~~~gD~~~---~~p 190 (228)
.+++.+||.||+|.|..+.++++ +|..+++++|+ |.+++.+++ .+|++++.+|..+ .-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 46789999999999999999987 56679999999 889887642 5799999999875 223
Q ss_pred CceEeeehhhhcCCChhH---HHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDED---GLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~---~~~il~~~~~aL~pgG~ 225 (228)
.||+|++-.. ....... ...+++.+++.|+|||+
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv 185 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGI 185 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCce
Confidence 5999985332 2222111 25789999999999985
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=4.1e-08 Score=76.18 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=69.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV---------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~---------p~~ 192 (228)
..++++|||||||+|..+..+++..+ +.+++.+|. |..++.++. .++|+++.||..+-+ ..+
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 45789999999999999999999875 589999999 777777653 578999999986522 138
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++- |+.........+.+..+.|+|||+
T Consensus 134 D~ifiD---~~~~~~~~~~~l~~~~~lLkpGGv 163 (214)
T d2cl5a1 134 DMVFLD---HWKDRYLPDTLLLEKCGLLRKGTV 163 (214)
T ss_dssp EEEEEC---SCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred ceeeec---ccccccccHHHHHHHhCccCCCcE
Confidence 988875 222222223346677788999975
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.37 E-value=1e-07 Score=77.72 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v 195 (228)
.+.+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|..+- .+ .||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 35788999999999999999998777778999999 888887653 58999999998762 23 49999
Q ss_pred eehhhhcCCC--hhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLG--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~--d~~~~~il~~~~~aL~pgG~ 225 (228)
++-..--.-+ .--...+++.+++.|+|||+
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi 215 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGI 215 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcE
Confidence 8643211111 11235679999999999975
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=1.3e-07 Score=77.76 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=69.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C----CCceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V----PPADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~----p~~D~v 195 (228)
..+..+|||++||+|.++..+++... .+++.+|+ +..++.+++ .++++++.+|+++. + ..||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35678999999999999999998753 48999999 888887764 46899999998762 1 149999
Q ss_pred eehhhhcCCCh---h----HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGD---E----DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d---~----~~~~il~~~~~aL~pgG~ 225 (228)
++--.-..-.. . .-.++++.+.+.|+|||.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~ 258 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 258 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 97433211111 1 224588888999999974
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.8e-07 Score=71.52 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC--------C-Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV--------P-PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~--------p-~~ 192 (228)
..++++||+||+++|..+..+++..| +.+++.+|. |+..+.+++ .++++++.||..+.+ + .|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 46789999999999999999999986 689999998 777666553 689999999986521 2 49
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++-. ..+.-...+..+.+.|+|||+
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGv 164 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGI 164 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEE
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcE
Confidence 9998842 223346778889999999975
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.33 E-value=1.9e-07 Score=75.49 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=72.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC--CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP--PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D~v 195 (228)
+++++||=||+|.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|.++ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 5788999999999999999999777778999999 888887764 6899999999765 233 49999
Q ss_pred eehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
++-.. ...... -...+++.+++.|+|||+
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi 190 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGV 190 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcE
Confidence 85322 111111 135689999999999975
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.27 E-value=7e-07 Score=70.40 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=66.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-c
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-A 192 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-~ 192 (228)
..+++ ..+ ..+..+|||||||+|.++..|+++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~kIv~-~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 19 NQIIK-QLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHH-HCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHH-hcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 44555 444 5677899999999999999999984 47899998 667776664 4689999999998 6663 4
Q ss_pred eEeeehhhhcCCChhHHHHHH
Q 038208 193 DAFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il 213 (228)
+..++.+.-++++.+-..+++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 555667777778765444433
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=5.1e-07 Score=72.19 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=55.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC----CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP----PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p----~~D~v~~~ 198 (228)
.+..+++|+|||+|..+..+++ +|+.+++++|+ |..++.|++ ..++.++.+|++++.+ .||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3467899999999999999875 69999999999 888887764 5689999999988543 48999876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=3.8e-07 Score=68.08 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=59.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--CCceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V--PPADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~--p~~D~v~~ 197 (228)
.....+|||+|||+|.++.+.+.+ ..+++.+|. +.+++.+++ ..++....+|.+.+ . ..||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 456789999999999999998887 457889999 888877664 45666666665421 1 24999987
Q ss_pred hhhhcCCChhHHHHHHHHHH--HHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRR--EAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~--~aL~pgG~ 225 (228)
.=..+ .... .++..+. ..|+|||+
T Consensus 117 DPPY~-~~~~---~~l~~l~~~~ll~~~g~ 142 (171)
T d1ws6a1 117 APPYA-MDLA---ALFGELLASGLVEAGGL 142 (171)
T ss_dssp CCCTT-SCTT---HHHHHHHHHTCEEEEEE
T ss_pred ccccc-cCHH---HHHHHHHHcCCcCCCeE
Confidence 43322 2222 2233332 35788864
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=2.3e-07 Score=76.09 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=68.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C----CCceEeee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V----PPADAFLF 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~----p~~D~v~~ 197 (228)
....+|||++||+|.++..+++. ..+++.+|+ +.+++.+++ .++++++.+|.++. + ..||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 35689999999999999998865 457999999 888887764 46899999998762 1 24999987
Q ss_pred hhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
--.-...+. ..-..+++.+.+.|+|||.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~ 256 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI 256 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 432211111 1224688999999999974
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.19 E-value=1.3e-06 Score=68.35 Aligned_cols=83 Identities=13% Similarity=0.321 Sum_probs=60.1
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCC-CCCC-c
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP----ETDNLKYIAGDMFQ-FVPP-A 192 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----~~~rv~~~~gD~~~-~~p~-~ 192 (228)
..+++ ..+ ..+..+|||||||+|.++..|+++. .+++++|+ +..++.++ ..++++++.+|+.+ +++. .
T Consensus 11 ~~iv~-~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 11 DKIMT-NIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHT-TCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHH-hcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 34444 443 5678999999999999999999984 46888888 66665544 36899999999998 6664 3
Q ss_pred eEeeehhhhcCCChh
Q 038208 193 DAFLFKLVFHGLGDE 207 (228)
Q Consensus 193 D~v~~~~vlh~~~d~ 207 (228)
...+..+.-++.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 444556665555433
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.1e-06 Score=66.21 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=63.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--CC--CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF--VP--PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~--~p--~~D~v~~~~vl 201 (228)
...+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|.++- .. .||+|++-=..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 4579999999999999999998754 7999999 777776553 56899999998762 22 49999986543
Q ss_pred cCCChhHHHHHHHHHHH--HhccCC
Q 038208 202 HGLGDEDGLKILKKRRE--AIASNG 224 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~--aL~pgG 224 (228)
.. .....++..+.+ .|+|+|
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~ 143 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEA 143 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCe
Confidence 32 223455555554 367765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.10 E-value=1e-06 Score=68.59 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=72.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------C-C
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------P-P 191 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p-~ 191 (228)
..++++||+||+++|.-+..+++..| +.+++.+|. |...+.|++ .++|+++.||..+- + . .
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 46789999999999999999999987 689999998 766665553 67899999998652 1 2 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++-. +. +.-...++.+.+.|+|||+
T Consensus 137 fD~iFiDa----~k-~~y~~~~e~~~~ll~~gGi 165 (227)
T d1susa1 137 YDFIFVDA----DK-DNYLNYHKRLIDLVKVGGV 165 (227)
T ss_dssp BSEEEECS----CS-TTHHHHHHHHHHHBCTTCC
T ss_pred eeEEEecc----ch-hhhHHHHHHHHhhcCCCcE
Confidence 99998842 22 3456888999999999986
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.08 E-value=1.7e-06 Score=70.23 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=68.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC-------CCceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV-------PPADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~-------p~~D~ 194 (228)
..+..+|||+.||+|.++..+++. ..+++.+|. +..++.+++ ..+++|+++|.++.+ ..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999999886 458999999 888887764 347999999997621 24999
Q ss_pred eeeh---hhhc----CCC-hhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFK---LVFH----GLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~---~vlh----~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
|++- +.-. .|. .+....+++.+.+.|+|||.
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~ 246 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL 246 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9872 1111 122 23345577788888999874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.99 E-value=8.2e-07 Score=72.63 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=67.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------C-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV------P-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~------p-~~D~ 194 (228)
+....+|||+.||+|.++..+++.. ..+++.+|+ +..++.+++ ..+++++.+|.++.+ . .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4567899999999999998877642 346999999 777776553 468999999997621 2 3999
Q ss_pred eeehhhh------cCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVF------HGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vl------h~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
|++--.- .-+. ..+-.++++.+.+.|+|||.
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~ 258 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL 258 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 9873110 0111 12335799999999999974
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.87 E-value=2.6e-05 Score=59.44 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=64.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CceEeeehhhhcCCC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP--PADAFLFKLVFHGLG- 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~- 205 (228)
.....+|+|.|||+|.++..+.++++. .+++++|+ +..+.. ..+..+..+|++...+ .+|+++.+.......
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---~~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---PPWAEGILADFLLWEPGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---CTTEEEEESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---cccceeeeeehhccccccccceecccCccccccc
Confidence 345689999999999999999988765 56999999 444333 3456778899877332 589998775532210
Q ss_pred --h------------------------hHHHHHHHHHHHHhccCCC
Q 038208 206 --D------------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 --d------------------------~~~~~il~~~~~aL~pgG~ 225 (228)
. +-...++.++.+.|+|||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~ 139 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 139 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCc
Confidence 0 0124567888899999975
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.85 E-value=8.6e-06 Score=66.48 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=68.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH-----CCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA-----FPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~-----~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~ 198 (228)
....+|+|.+||+|.++.++.++ .++.+++++|+ +.++..|+. .....+..+|.+...+ .||+|+.+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 34578999999999999998764 34567999999 777766653 5678888888877433 59999888
Q ss_pred hhhcCCC-hhH---------------HHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLG-DED---------------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~-d~~---------------~~~il~~~~~aL~pgG~ 225 (228)
-...... ++. -..++.++.+.|+|||.
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~ 238 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGY 238 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCc
Confidence 6543222 111 13469999999999975
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.77 E-value=6.8e-06 Score=61.66 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=65.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CC-CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF------VP-PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~------~p-~~D~v~~ 197 (228)
...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|.++- .. .||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5689999999999999999998643 7999998 777766553 56899999998652 12 4999987
Q ss_pred hhhhcCCChhHHHHHHHHHHH--HhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRRE--AIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~--aL~pgG~ 225 (228)
-=..+ ......+|..+.+ .|+|+|.
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~~gi 146 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTNEAV 146 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEEEEE
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCCCEE
Confidence 44322 2334566777765 4788753
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=6.4e-05 Score=56.11 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=73.1
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C-----C
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-F-----V 189 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~-----~ 189 (228)
..+++. .+. ......+||..+|.|.++..++++ +.+++++|. |.+++.++. .+|+.++.++|.+ . .
T Consensus 7 l~Evl~-~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEALD-LLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHH-HHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHH-hcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 455566 554 467789999999999999999997 568999999 888877653 6799999998865 1 1
Q ss_pred --CCceEee-----ehhhhcCCCh--hHHHHHHHHHHHHhccCCC
Q 038208 190 --PPADAFL-----FKLVFHGLGD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 --p~~D~v~-----~~~vlh~~~d--~~~~~il~~~~~aL~pgG~ 225 (228)
..+|.|+ .++-|.+-.. ......|......|+|||.
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~ 126 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGR 126 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCe
Confidence 2355554 4444443322 1234568888899999863
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00027 Score=52.53 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=64.9
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C--------C--Cce
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF-V--------P--PAD 193 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~-~--------p--~~D 193 (228)
.+. .+.+..+||||||++|.|+..+.++. +..+++++|+..+ ...+.+.++.+|+... . . .+|
T Consensus 16 k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 16 SDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp HHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred HhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccCccee
Confidence 454 35677899999999999999988865 5578999998432 3368899999999762 1 1 389
Q ss_pred EeeehhhhcCCC----h-----hHHHHHHHHHHHHhccCC
Q 038208 194 AFLFKLVFHGLG----D-----EDGLKILKKRREAIASNG 224 (228)
Q Consensus 194 ~v~~~~vlh~~~----d-----~~~~~il~~~~~aL~pgG 224 (228)
+|++=.....-. | +-+...+.-+.+.|+|||
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG 130 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGG 130 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCC
Confidence 987654433221 1 223344556677788886
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=7.1e-05 Score=59.60 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=52.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p 190 (228)
..+++ ... .....+||+||+|.|.++..|+++.+ +++++++ +..++..++ .++++++.+|+.+ ++|
T Consensus 11 ~kIv~-~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 11 NSIID-KAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHH-HTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHH-HhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 34444 443 45678999999999999999999854 6888887 555554432 3689999999998 666
Q ss_pred CceEee
Q 038208 191 PADAFL 196 (228)
Q Consensus 191 ~~D~v~ 196 (228)
..+.++
T Consensus 86 ~~~~vV 91 (278)
T d1zq9a1 86 FFDTCV 91 (278)
T ss_dssp CCSEEE
T ss_pred hhhhhh
Confidence 544443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=8.1e-05 Score=56.69 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC--CCCceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQF--VPPADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~~--~p~~D~v~~~~vlh~ 203 (228)
...+++|||+|.|.=+.-++-.+|+.+++++|- . ..+..+.. ..++++++....+. ...||+|+++-+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 457999999999999999999999999999996 2 22322221 56899999998773 2359999988753
Q ss_pred CChhHHHHHHHHHHHHhccCC
Q 038208 204 LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG 224 (228)
+- ..++.-+...++++|
T Consensus 143 --~~--~~ll~~~~~~l~~~g 159 (207)
T d1jsxa_ 143 --SL--NDMVSWCHHLPGEQG 159 (207)
T ss_dssp --SH--HHHHHHHTTSEEEEE
T ss_pred --CH--HHHHHHHHHhcCCCc
Confidence 22 457777777788875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=6.7e-05 Score=58.93 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-- 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-- 191 (228)
..+++ ... ..+...||+||||.|.++..|+++. .+++++|+ +..++..++ .++++++.+|+.+ +++.
T Consensus 11 ~~Iv~-~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 11 DSIVS-AIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHH-HHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHH-hcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 44555 443 5668899999999999999999975 46888888 666655433 5789999999987 3321
Q ss_pred ----ceEeeehhhhcCCCh
Q 038208 192 ----ADAFLFKLVFHGLGD 206 (228)
Q Consensus 192 ----~D~v~~~~vlh~~~d 206 (228)
--+.++.+.-++.+-
T Consensus 86 ~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCCeEEEecchHHHHH
Confidence 124455555555543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.29 E-value=0.00053 Score=53.19 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=59.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHH---hcCCC---CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVV---ANLPE---TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i---~~a~~---~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
+....+|||+|||.|.++..++++.+..++.++|+-.-. ..... .+-+++...+-....+ .+|++++=..-+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCC
Confidence 556679999999999999999988776777777762111 11111 2335666554333333 389888764433
Q ss_pred CC--Ch--hHHHHHHHHHHHHhccCC
Q 038208 203 GL--GD--EDGLKILKKRREAIASNG 224 (228)
Q Consensus 203 ~~--~d--~~~~~il~~~~~aL~pgG 224 (228)
.- .- +...++|.-+.+.|+|||
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg 169 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNT 169 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCC
Confidence 21 11 233467888889999996
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00044 Score=56.56 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-------CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-------PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-------~~D~v~ 196 (228)
..+..+|+|+-||+|.++..|+++. .+++++|. ++.++.|++ ..+++|+.+|..+.++ .+|+++
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 4467899999999999999999863 57999999 888887764 6789999999876322 278775
Q ss_pred ehhhhcCCChhHHHHHHHHHHH
Q 038208 197 FKLVFHGLGDEDGLKILKKRRE 218 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~ 218 (228)
+ |-|-.-+.++++.+.+
T Consensus 288 l-----DPPR~G~~~~~~~l~~ 304 (358)
T d1uwva2 288 L-----DPARAGAAGVMQQIIK 304 (358)
T ss_dssp E-----CCCTTCCHHHHHHHHH
T ss_pred e-----CCCCccHHHHHHHHHH
Confidence 5 4443333344444443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.95 E-value=0.0016 Score=50.18 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=59.4
Q ss_pred CCCeEEEecCCCcHHHHHHHH----HCCCCeEEEeec-hHHHhcCC-CCCCeEEEeCCCCCC-----CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISE----AFPGIKCTVLDL-PHVVANLP-ETDNLKYIAGDMFQF-----VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~----~~p~~~~~~~Dl-p~~i~~a~-~~~rv~~~~gD~~~~-----~p--~~D~v~~~~ 199 (228)
++.+||+||+..|.-+..++. ..++.+++++|+ +....... ..+||+++.+|..++ +. .+|+|++=.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 588999999999987665543 347889999998 44333332 268999999998652 22 267776543
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-|.. +.+...+ .....|+|||.
T Consensus 160 -~H~~--~~v~~~~-~~~~lLk~GG~ 181 (232)
T d2bm8a1 160 -AHAN--TFNIMKW-AVDHLLEEGDY 181 (232)
T ss_dssp -SCSS--HHHHHHH-HHHHTCCTTCE
T ss_pred -Ccch--HHHHHHH-HHhcccCcCCE
Confidence 3543 3333334 46688999973
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.69 E-value=0.002 Score=51.44 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=71.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC----------CC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP---------ETDNLKYIAGDMFQFV----------PP- 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------~~~rv~~~~gD~~~~~----------p~- 191 (228)
.+...||.+|||-=.....+ ...++++++=+|+|++++.-+ ...+..++..|+..++ |+
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678888999999887766 335788999999999986322 2456788888886532 12
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.-+++.-.++++++++++.++|+.+.+..+||.
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS 199 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS 199 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCC
Confidence 466777789999999999999999999988884
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.62 E-value=0.00075 Score=50.03 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC----C--CCCceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ----F--VPPADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~----~--~p~~D~v~~ 197 (228)
...+|||+-||+|.++.+.+.+... +++.+|. +..+..+++ ...+.++..|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4569999999999999999999643 7999998 666554332 3457777777543 1 124999976
Q ss_pred hhhhcCCChhHHHHHHHHHHH--HhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRRE--AIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~--aL~pgG 224 (228)
-=.. .. .....+|..+.+ .|+++|
T Consensus 122 DPPY-~~--~~~~~~l~~l~~~~~L~~~~ 147 (183)
T d2ifta1 122 DPPF-HF--NLAEQAISLLCENNWLKPNA 147 (183)
T ss_dssp CCCS-SS--CHHHHHHHHHHHTTCEEEEE
T ss_pred chhH-hh--hhHHHHHHHHHHhCCcCCCc
Confidence 4433 22 233566666655 477775
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.56 E-value=0.00064 Score=57.09 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC-------------CCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP-------------GIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFVP 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p-------------~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~p 190 (228)
...+|+|-.||+|.++.++.++.. +..+.++|+ +.....++. ........+|.+...+
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~ 241 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 241 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhc
Confidence 468999999999999998877542 134889998 655554431 3466788899987444
Q ss_pred --CceEeeehhhhcCCC---------------hhHHHHHHHHHHHHhccCCCC
Q 038208 191 --PADAFLFKLVFHGLG---------------DEDGLKILKKRREAIASNGER 226 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~---------------d~~~~~il~~~~~aL~pgG~~ 226 (228)
.||+|+.+=....-. ...-..++.++...|+|||..
T Consensus 242 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 242 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 499998876653211 011245899999999999753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.53 E-value=0.0015 Score=50.44 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCC-----CCC-CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQ-----FVP-PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~-----~~p-~~D~v~~~ 198 (228)
....+++|||+|.|.=+.-++=.+|+.+++.+|- . ..+..+.. ..++.+++....+ +.. .||+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3567999999999999999999999999999996 2 22222221 5788888876643 122 49999998
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
-+- + ...++.-+...+++||
T Consensus 149 Ava----~--l~~ll~~~~~~l~~~g 168 (239)
T d1xdza_ 149 AVA----R--LSVLSELCLPLVKKNG 168 (239)
T ss_dssp CCS----C--HHHHHHHHGGGEEEEE
T ss_pred hhh----C--HHHHHHHHhhhcccCC
Confidence 643 2 2467777888888875
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0041 Score=50.11 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP---ETDNLKYIAGDMFQ 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---~~~rv~~~~gD~~~ 187 (228)
...+|||||+|.|.++..|+++.-.-++++++. +..++..+ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 456899999999999999998743347899988 55444433 26789999999874
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0047 Score=38.59 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=36.7
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
+.|++.+...+.|+|+.| +|..|+..|++++++ ++.|.+++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~----~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT----TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC----CCCEeecHHH
Confidence 467888888777899998 999999999999986 7899998743
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.50 E-value=0.026 Score=45.02 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CC-CceEeee--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F-VP-PADAFLF-- 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~-~p-~~D~v~~-- 197 (228)
.....+|||+.+|.|.=+..++.... +..++..|. +.-+...+. ..++.....|... + .. .||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 35568999999999998888888764 568999998 554443332 5678888888765 2 23 4898876
Q ss_pred -----------hhhhcCCCh-------hHHHHHHHHHHHHhccCC
Q 038208 198 -----------KLVFHGLGD-------EDGLKILKKRREAIASNG 224 (228)
Q Consensus 198 -----------~~vlh~~~d-------~~~~~il~~~~~aL~pgG 224 (228)
..+...|.. ....+||+++...+||||
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG 238 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCc
Confidence 112222333 223578899999999996
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.058 Score=43.20 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC---------------------------CCCCeEEEeCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP---------------------------ETDNLKYIAGDM 185 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------------------------~~~rv~~~~gD~ 185 (228)
+...||-+|||.=.....+...+|+++++=+|+|++++.-+ ..++.+++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 45689999999999999999899999999999998886211 057899999999
Q ss_pred CC-CC----------CC-ceEeeehhhhcCCChhHHHHHHHHHHHHhcc
Q 038208 186 FQ-FV----------PP-ADAFLFKLVFHGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 186 ~~-~~----------p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~p 222 (228)
.+ +. ++ .-++++-.||.+++++++.++++.+.+..++
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~ 224 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH 224 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC
Confidence 76 11 12 5678889999999999999999999887654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.027 Score=44.18 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=63.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeee--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLF-- 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~-- 197 (228)
.....+|||++++.|.=+..+++...+.+++..|. +.-+...++ ...+..+..|... . .+ .||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45678999999999999999999888889999998 433332221 3445555555543 1 22 3888864
Q ss_pred ----hh-------hhcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 198 ----KL-------VFHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ----~~-------vlh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.. +.+.|++++ -.+||+++.+.|+|||.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~ 225 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 225 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCce
Confidence 11 223343322 36788899999999963
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.84 E-value=0.094 Score=42.41 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCcHHH-------H-HHHHH--------CCCCeEEEeechH-----HHhcCCC----CC--CeEEEeCCC
Q 038208 133 GLGSLVDVGGGNGSFS-------R-IISEA--------FPGIKCTVLDLPH-----VVANLPE----TD--NLKYIAGDM 185 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~-------~-~l~~~--------~p~~~~~~~Dlp~-----~i~~a~~----~~--rv~~~~gD~ 185 (228)
+.-+|.|+||.+|..+ + .+.++ -|.+++..-|+|. +...... .. -+..++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 4467999999999876 2 33322 3567888889973 3333322 11 266688999
Q ss_pred CC-CCCC--ceEeeehhhhcCCCh-------------------------------hHHHHHHHHHHHHhccCC
Q 038208 186 FQ-FVPP--ADAFLFKLVFHGLGD-------------------------------EDGLKILKKRREAIASNG 224 (228)
Q Consensus 186 ~~-~~p~--~D~v~~~~vlh~~~d-------------------------------~~~~~il~~~~~aL~pgG 224 (228)
.. -+|. .|++++++.||.++. .+-..+|+.=++-|+|||
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG 203 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG 203 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88 4773 899999999997642 133457888888889986
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.72 E-value=0.018 Score=47.19 Aligned_cols=87 Identities=9% Similarity=0.024 Sum_probs=64.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------------CCCeEEEeCCCCC---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------------TDNLKYIAGDMFQ--- 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------------~~rv~~~~gD~~~--- 187 (228)
+..+|||..||+|..+...++..+..+++..|+ |..++.+++ ...+.+.+.|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999998888778999999 777776543 1236667777643
Q ss_pred CCC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 188 FVP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 188 ~~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... .||+|-+=- +... ..+|..+.++++.||.
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gl 157 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGI 157 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEE
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCE
Confidence 233 389886643 2222 4689999999998864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.48 E-value=0.052 Score=38.68 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=57.1
Q ss_pred eEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeehhhhcCCChhHHHH
Q 038208 136 SLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFKLVFHGLGDEDGLK 211 (228)
Q Consensus 136 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~~d~~~~~ 211 (228)
+|+=||||. +.++..+.+..++.+++++|. ++.++.+++...+....-+... ....+|+|++.- |++....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 577789985 336667777778899999999 7777776654333333333322 223578888654 5567788
Q ss_pred HHHHHHHHhccC
Q 038208 212 ILKKRREAIASN 223 (228)
Q Consensus 212 il~~~~~aL~pg 223 (228)
++.++.+.++++
T Consensus 78 vl~~l~~~~~~~ 89 (171)
T d2g5ca2 78 IAKKLSYILSED 89 (171)
T ss_dssp HHHHHHHHSCTT
T ss_pred hhhhhhcccccc
Confidence 899999988876
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.016 Score=49.66 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC----CC--------------CeEEEeec-hHHHhcCCC-----------CCCeEEEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF----PG--------------IKCTVLDL-PHVVANLPE-----------TDNLKYIA 182 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~----p~--------------~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~ 182 (228)
...+|+|-.||+|.++.+..+.. .. ..+.++|+ +.+...++. ...-.+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 45699999999999998776642 11 24789998 655544331 11234555
Q ss_pred CCCCC-C---CCCceEeeehhhhcC-CC-----------hhHHHHHHHHHHHHhccCCCC
Q 038208 183 GDMFQ-F---VPPADAFLFKLVFHG-LG-----------DEDGLKILKKRREAIASNGER 226 (228)
Q Consensus 183 gD~~~-~---~p~~D~v~~~~vlh~-~~-----------d~~~~~il~~~~~aL~pgG~~ 226 (228)
+|.+. + .+.||+|+.+=..-. +. ...-..++.++.+.|+|||..
T Consensus 244 ~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 244 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred hhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 66654 2 235999987654421 11 111245899999999999753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.46 E-value=0.16 Score=35.83 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=50.6
Q ss_pred eEEEecCC--CcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHH
Q 038208 136 SLVDVGGG--NGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKI 212 (228)
Q Consensus 136 ~vlDvGgG--~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~i 212 (228)
+|.=||+| -+.++..+.+. +.+++++|. ++.++.+++...+... .+..+....+|+|++. .|+.....+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeeccccccccccccc-----CcHhhhhhh
Confidence 35557765 23345555544 568999998 7777766543322222 2222345578998764 366778899
Q ss_pred HHHHHHHhccC
Q 038208 213 LKKRREAIASN 223 (228)
Q Consensus 213 l~~~~~aL~pg 223 (228)
++++...++|+
T Consensus 74 l~~l~~~l~~~ 84 (165)
T d2f1ka2 74 LEKLIPHLSPT 84 (165)
T ss_dssp HHHHGGGSCTT
T ss_pred hhhhhhhcccc
Confidence 99998888876
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.28 Score=38.22 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=49.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-C---CCceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ--F-V---PPADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~--~-~---p~~D~v~ 196 (228)
.....+|||+++|+|.-+..++.. .+..+++++|+ +.-+..+++ ..++.+...|+.. + . ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 456789999999999988888876 45678999998 555544432 5779999999865 1 1 2388886
Q ss_pred e
Q 038208 197 F 197 (228)
Q Consensus 197 ~ 197 (228)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.53 E-value=0.064 Score=41.19 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=48.2
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------C--------CCCeEEEeCCCCC---CC-CCce
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------E--------TDNLKYIAGDMFQ---FV-PPAD 193 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~--------~~rv~~~~gD~~~---~~-p~~D 193 (228)
..+|||.=||.|.-+..++.. ..+++.++. |.+....+ . ..|++++++|..+ .. +.+|
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 358999999999999999998 478999998 54332211 1 3489999999755 22 2489
Q ss_pred Eeeehhhh
Q 038208 194 AFLFKLVF 201 (228)
Q Consensus 194 ~v~~~~vl 201 (228)
+|++==.+
T Consensus 167 vIYlDPMF 174 (250)
T d2oyra1 167 VVYLDPMF 174 (250)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99874443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.39 E-value=0.45 Score=38.18 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=38.8
Q ss_pred cCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCC-------CCeEEEeechHH
Q 038208 99 QNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFP-------GIKCTVLDLPHV 168 (228)
Q Consensus 99 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-------~~~~~~~Dlp~~ 168 (228)
..|+....|...++.+- ..+.. .+. .++...||++|+|+|.++..+++... .++++.++....
T Consensus 52 Tsp~is~~Fg~~ia~~~----~~~~~-~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~ 121 (365)
T d1zkda1 52 TSPEISQMFGELLGLWS----ASVWK-AAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121 (365)
T ss_dssp SHHHHCHHHHHHHHHHH----HHHHH-HTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred CCCchHHHHHHHHHHHH----HHHHH-HhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence 35666667776654311 11122 222 23456899999999999998877532 346788887433
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=81.81 E-value=2 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=45.5
Q ss_pred ccCCCeEEEec-CCCcHHHH--HHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVG-GGNGSFSR--IISEAFPGIKCTVLDL--PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvG-gG~G~~~~--~l~~~~p~~~~~~~Dl--p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
+....++.=|| ||+|-.+. .+.++ +.++++.|. ....+...+ ..+.+..+.-.+.+++.|+++.+..+-
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCcC
Confidence 45567788888 78886553 34444 778999997 333333332 456666666655677789998888764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.19 E-value=0.32 Score=32.82 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=50.1
Q ss_pred eEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCceEeeehhhhcCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-------VPPADAFLFKLVFHGLG 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-------~p~~D~v~~~~vlh~~~ 205 (228)
+|+=+| .|.++..+++.. -+.+++++|. |+.++.+++.-.+.++.||...+ +..+|.++.. -+
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 344444 478888777754 3568999998 87777665433678999999763 2247777663 23
Q ss_pred hhHHHHHHHHHHHHhccC
Q 038208 206 DEDGLKILKKRREAIASN 223 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pg 223 (228)
+++.-.+.....+.+.+.
T Consensus 75 ~d~~N~~~~~~~k~~~~~ 92 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGIN 92 (132)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHcCCc
Confidence 333333444455555544
|