Citrus Sinensis ID: 038213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
lsrqniqtfvddqlsrgdeISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIpvfyrvdpsdvrnqmgsFGILFSKLEERLKVNTEKLQSWRNALKEAASlssfhslnmr
Flexible Loop (DISEMBL)
lsrqniqtfvddqlsrgdEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKeaaslssfhslnmr
Low Complexity Region (SEG)
LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR
Disordered region (IsUnstruct)
**********************SLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNT*************************
Disordered Region (DISOPRED)
LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEE******EKL*SWRNALKEAASLSSFHSLNMR
Disordered Region (DISEMBL)
LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR
Disordered Region (DISPRO)
***QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.928	0.101	0.504	3e-26
O82500	1095	Putative disease resistan	no	no	0.944	0.107	0.475	6e-25
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.872	0.083	0.415	7e-20
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.936	0.284	0.389	1e-17
Q9SYC9	571	Vesicle-associated protei	no	no	0.848	0.185	0.373	4e-14
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.912	0.322	0.347	5e-14
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.88	0.280	0.369	5e-12

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 1/117 (0%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L+ + I+TF DD+ L  G  I   L  AIE S  ++++FSE YA+SRWCL++LVKI+E K
Sbjct: 35  LNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECK 94

Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116
             + Q VIP+FY VDPS VRNQ  SF   F + E + K + E +Q WR AL EAA+L
Sbjct: 95  TRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANL 151

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

Query: 4   QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
           + I TF DD + R   I   L  AI  S ISV+LFSE YASS WCLD+L++I++ K+E  
Sbjct: 37  KGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQG 96

Query: 64  QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
             V+PVFY+VDPSD+R Q G FG+ F  LE       E+  +WR AL +AA++   H  N
Sbjct: 97  LKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 4/113 (3%)

Query: 8   TFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVI 67
           TF+DD++ R   I   L++AI+ S I++++FS+ YASS WCL++LV+I +      Q+VI
Sbjct: 41  TFIDDEIERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVI 100

Query: 68  PVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTE-KLQSWRNALKEAASLSSF 119
           P+F+ VD S+V+ Q G FG +F   EE  K  +E + QSW+ AL   A ++ +
Sbjct: 101 PIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L ++ I  F+D+Q  RG  +  SL + I  S I++++FSEGY  S WC+D+LVKI E   
Sbjct: 45  LKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMD 103

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSS 118
           +   I+IP+FYR+D   V++  G FG  F  L ++ +   +KL  W  AL     L S
Sbjct: 104 QNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWTEALFSVCELFS 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 4   QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
           + I  F D+   RG  ++  L   IE S ++V +FSE Y  S WCLD+LVK+ E  ++  
Sbjct: 384 EKINVFTDEVELRGTNLN-YLFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGK 442

Query: 64  QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNAL 110
            +V+PVFYR++ +  +  MG+FG     LE   +   E++Q W+ AL
Sbjct: 443 LVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 5   NIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQ 64
           NI  F+D     G ++    V  I+ S ++V++FS+ Y SS WCLD+L +I +   +   
Sbjct: 41  NINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGL 99

Query: 65  IVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
             IP+FY++ PS V    G FG  F  L+E+ K + E+ Q W+ AL+    L   
Sbjct: 100 NAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L   NI  F+D+    G E++ +L+  IE S +++++FS  +  S  CL++L KI E K 
Sbjct: 38  LREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKD 96

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALK 111
           +   IVIP+FY+V PS V+   G FG  F  LE   +      Q W+ AL+
Sbjct: 97  QGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHMLPITQKWKEALE 147

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255555357	1094	leucine-rich repeat-containing protein,	1.0	0.114	0.6	1e-35
255555353	1010	Disease resistance protein RPS2, putativ	0.968	0.119	0.603	6e-34
255561496	876	TMV resistance protein N, putative [Rici	1.0	0.142	0.584	8e-34
224127754	1125	tir-nbs-lrr resistance protein [Populus	1.0	0.111	0.56	4e-33
351722793	299	TIR-NBS-LRR type disease resistance prot	1.0	0.418	0.512	6e-33
357486483	242	TMV resistance protein N [Medicago trunc	0.952	0.491	0.546	6e-33
357462141	1545	Tir-nbs-lrr resistance protein [Medicago	0.976	0.078	0.560	6e-33
224145362	155	predicted protein [Populus trichocarpa]	0.952	0.767	0.588	8e-33
255564962	1091	TMV resistance protein N, putative [Rici	1.0	0.114	0.563	9e-33
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.968	0.077	0.570	1e-32

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 95/125 (76%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L+ + I TF+DD L RG+EIS SL+ AIE S ISV++ S+ Y SS+WCL++LVKILE  K
Sbjct: 46  LNGKKIPTFIDDDLERGNEISPSLLKAIEESKISVVIISQDYPSSKWCLEELVKILECMK 105

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
              Q+VIPVFYRVDPS VRNQ GSF  +F++ EE L V+ EK+QSWR ALKE A+LS +H
Sbjct: 106 NRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESLSVSKEKVQSWRAALKEVANLSGWH 165

Query: 121 SLNMR 125
           S + R
Sbjct: 166 STSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555353|ref|XP_002518713.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223542094|gb|EEF43638.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 92/121 (76%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L+ + I TF+DD L RG EIS SL+ AIE S ISV++ S+ Y SS+WCL++LVKILE  K
Sbjct: 23  LNGKRIPTFIDDDLERGKEISPSLLKAIEESKISVVIISQDYPSSKWCLEELVKILECMK 82

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
              Q+VIPVFYRVDPS VRNQ GSF  +F++ +E L V+ EK+QSWR ALKE A+LS +H
Sbjct: 83  NRGQMVIPVFYRVDPSHVRNQTGSFEDVFAQHKESLLVSKEKVQSWRAALKEVANLSGWH 142

Query: 121 S 121
           S
Sbjct: 143 S 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 93/125 (74%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L+++ I TF+D ++ RG+EIS S+  AI+ S +SVI+FSE YA S+WCLD+L KILE KK
Sbjct: 34  LNKKKIFTFMDKEIKRGEEISPSIAKAIKGSKLSVIIFSEKYAFSKWCLDELTKILECKK 93

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
              QIVIPVFYRVDP  VRNQ GSF   F+K EE LK   EK++SWR+AL EA S+S ++
Sbjct: 94  MNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEETLKERMEKVESWRSALNEAGSISGWN 153

Query: 121 SLNMR 125
           SL  R
Sbjct: 154 SLVAR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 96/125 (76%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L R+ I TF+D +L+RG+EIS SL+ AIE S +SV++FS+ YASS+WCL++L KILE KK
Sbjct: 38  LKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSVVVFSDNYASSKWCLEELAKILECKK 97

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
              Q+VIPVFYRVDPS VRNQ GSF   F++ ++ LK   EK+ +WR A++EAA+LS + 
Sbjct: 98  VKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQLLKEKMEKVLNWRAAMREAANLSGWD 157

Query: 121 SLNMR 125
           S N++
Sbjct: 158 SHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 93/125 (74%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L+R  ++T++D++L RGDEIS SL+ AI+ + ++VI+FSE YASSRWCLD+LVKI+E K+
Sbjct: 42  LTRLQVKTYIDNELERGDEISPSLLRAIDDAKVAVIVFSENYASSRWCLDELVKIMECKR 101

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
           +  QI++PVFY VDP+ VR+Q GS+G  F+  E+R   N  K+Q+WR  L E A++S + 
Sbjct: 102 KNGQIIVPVFYHVDPTHVRHQTGSYGHAFAMHEQRFVGNMNKVQTWRLVLGEVANISGWD 161

Query: 121 SLNMR 125
            L  R
Sbjct: 162 CLTTR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 91/119 (76%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L+R ++ T++D  L RGDEIS +L+ AIE +++SV++FS+ Y +S+WCLD+LVKILE KK
Sbjct: 37  LTRLDVGTYIDYHLQRGDEISSALLRAIEEASLSVVVFSKNYGNSKWCLDELVKILECKK 96

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
              QIV+P+FY ++PSDVRNQ GS+   F K EER   N E++Q WR AL+EAA+LS +
Sbjct: 97  MRGQIVLPIFYDIEPSDVRNQTGSYADAFVKHEERFHGNLERVQKWREALREAANLSGW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462141|ref|XP_003601352.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355490400|gb|AES71603.1| Tir-nbs-lrr resistance protein [Medicago truncatula]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 94/123 (76%), Gaps = 1/123 (0%)

Query: 4   QNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEY 62
           + I TF+DD +L +GDEIS +L+ AIE S+ S+++FS+ YASS+WCL++LVKILE KK+ 
Sbjct: 482 KKIITFIDDNELEKGDEISSALIKAIEDSSASIVIFSKDYASSKWCLNELVKILECKKDQ 541

Query: 63  AQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSL 122
            QIVIP+FY +DPS VRNQ GS+G  F+K    LK N E L+ W++AL EAA+L+ +HS 
Sbjct: 542 GQIVIPIFYEIDPSHVRNQNGSYGQAFAKHARDLKQNKEMLKKWKDALTEAANLAGWHSQ 601

Query: 123 NMR 125
           N R
Sbjct: 602 NYR 604

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 92/119 (77%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L R+ I+TF+D QL RGDEISESL+  IE + +SVI+FSE YASS+WCL++LVKI E +K
Sbjct: 33  LDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLSVIVFSENYASSKWCLEELVKIFECRK 92

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
              QIVIPVFY+VDPS VRNQ GSFG  F++L  +  +  +K QS+R+AL +AA+LS +
Sbjct: 93  NNGQIVIPVFYQVDPSHVRNQTGSFGDAFARLIRKKALTMDKEQSFRDALTDAATLSGW 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           LSR+++ TF+DD  L RG+EIS +L+ AIE S ISVI+FSE YASS+WCLD+LVKI+E  
Sbjct: 39  LSRKHVTTFIDDHGLDRGEEISPTLLKAIEESKISVIIFSENYASSKWCLDELVKIMECM 98

Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
           K  ++ V+PVFY VDPSDVR Q GSFG  F  ++E+ K + +++Q W  AL EAA+LS +
Sbjct: 99  KTMSRNVLPVFYHVDPSDVRKQTGSFGQAFGVVKEKFKGSMDRVQRWSTALTEAANLSGW 158

Query: 120 HSLNMR 125
            S N R
Sbjct: 159 DSNNYR 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 88/121 (72%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L RQ I+TF+DD+L RG+EI+ +L+  IE S +S+++FSE YASS WCLD+LVKILE K+
Sbjct: 36  LRRQKIKTFIDDRLERGEEITPALLKTIEESRVSIVIFSENYASSPWCLDELVKILECKE 95

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
            Y QIV+PVFY VDPSDV  Q GSFG  FS+LE+  K    K+  WR  L  AAS+S + 
Sbjct: 96  TYGQIVLPVFYHVDPSDVDEQTGSFGNAFSELEKNFKGKMGKVPRWRADLTYAASISGWD 155

Query: 121 S 121
           S
Sbjct: 156 S 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.888	0.354	0.491	4.2e-24
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.928	0.101	0.504	4.6e-23
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.944	0.113	0.466	8.3e-23
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.952	0.100	0.438	1.3e-22
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.96	0.119	0.435	2.1e-22
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.944	0.107	0.475	3.9e-22
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.944	0.108	0.466	6.4e-22
TAIR|locus:2026649	966	AT1G63730 [Arabidopsis thalian	0.912	0.118	0.487	8.7e-22
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.976	0.153	0.468	1.3e-21
TAIR|locus:2155801	1046	AT5G58120 [Arabidopsis thalian	0.96	0.114	0.450	2.1e-21

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/116 (49%), Positives = 79/116 (68%)

Query:     1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
             L R+ I+TF+ D+L   +   ESL  AIE S ISVI+FSE +  SRWCLD++V IL+ K+
Sbjct:    32 LRRKRIKTFLYDELPADERYEESL-KAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKE 90

Query:    61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116
             ++ QIVIPV Y VDP D+ NQ GSFG  F+K  ++     E+LQ W+++  EA +L
Sbjct:    91 KFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK----AEQLQEWKDSFTEAINL 142

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 279 (103.3 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 59/117 (50%), Positives = 78/117 (66%)

Query:     1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
             L+ + I+TF DD+ L  G  I   L  AIE S  ++++FSE YA+SRWCL++LVKI+E K
Sbjct:    35 LNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECK 94

Query:    60 KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116
               + Q VIP+FY VDPS VRNQ  SF   F + E + K + E +Q WR AL EAA+L
Sbjct:    95 TRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANL 151

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 56/120 (46%), Positives = 75/120 (62%)

Query:     4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
             + I  F D ++ RG  I   LV AI  S +S+++ S+ Y SS WCLD+LV+IL+ K++  
Sbjct:    37 KGIVAFKDQEIERGQRIGPELVQAIRESRVSLVVLSKNYPSSSWCLDELVEILKCKEDQE 96

Query:    64 QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
             QIV+P+FY +DPSDVR Q G FG  F K    +    E  Q W NAL EAA++   HSLN
Sbjct:    97 QIVMPIFYEIDPSDVRKQSGDFGKAFGKT--CVGKTKEVKQRWTNALTEAANIGGEHSLN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/121 (43%), Positives = 81/121 (66%)

Query:     3 RQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEY 62
             R  I  FVD+++ RG+ I   L+ AI  S I++IL S  YASS+WCLD+LV+I++ ++EY
Sbjct:    87 RMGITPFVDNEIKRGESIGPELLRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEY 146

Query:    63 AQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSL 122
              Q V+ +FY+VDPSDV+N  G FG +F K     K   + +  WR A ++ A+++ +HS+
Sbjct:   147 GQTVMAIFYKVDPSDVKNLTGDFGKVFRKTCAG-KPKKD-IGRWRQAWEKVATVAGYHSI 204

Query:   123 N 123
             N
Sbjct:   205 N 205

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/124 (43%), Positives = 80/124 (64%)

Query:     1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
             L R+ I  F D+ + R   +   L  AI  S I++++FS+ YA+S WCLD+L++I++ K+
Sbjct:    33 LDRKLISVFKDNDIQRSQSLDPELKLAIRDSRIAIVVFSKNYAASSWCLDELLEIVKCKE 92

Query:    61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTE-KLQSWRNALKEAASLSSF 119
             E+ QIVIPVFY +DP  VR Q G FGI+F   E   +  T+ ++Q WR AL + A++  F
Sbjct:    93 EFGQIVIPVFYGLDPCHVRKQSGEFGIVF---ENTCQTKTDDEIQKWRRALTDVANILGF 149

Query:   120 HSLN 123
             HS N
Sbjct:   150 HSSN 153

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 57/120 (47%), Positives = 75/120 (62%)

Query:     4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
             + I TF DD + R   I   L  AI  S ISV+LFSE YASS WCLD+L++I++ K+E  
Sbjct:    37 KGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQG 96

Query:    64 QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
               V+PVFY+VDPSD+R Q G FG+ F  LE       E+  +WR AL +AA++   H  N
Sbjct:    97 LKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 56/120 (46%), Positives = 75/120 (62%)

Query:     4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
             + I TF D ++ +G+ I   LVNAI  S +S++L S+ YASS WCLD+LV+IL+ K++  
Sbjct:    39 KGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQG 98

Query:    64 QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
             QIV+ +FY VDPS VR Q G FG  F K  E    + E  Q W  AL   A++   HSLN
Sbjct:    99 QIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGK--SEEVKQRWTKALTHVANIKGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2026649 AT1G63730 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.7e-22, P = 8.7e-22
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:     8 TFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIV 66
             T  DDQ + RG  IS  L   I  S IS+++ S+ YASS WCLD+L++IL+ K++  QIV
Sbjct:    42 TMFDDQRIERGQTISPELTRGIRESRISIVVLSKNYASSSWCLDELLEILKCKEDIGQIV 101

Query:    67 IPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
             + VFY VDPSDVR Q G FGI FS+   R K   EK Q W  AL +  +++  H LN
Sbjct:   102 MTVFYGVDPSDVRKQTGEFGIRFSETWAR-KTEEEK-QKWSQALNDVGNIAGEHFLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 59/126 (46%), Positives = 81/126 (64%)

Query:     1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
             L R+ I TF D+++ R  +I+  L+ AIE S IS+++FS+ YASS WCLD+LVKI E  +
Sbjct:    32 LDRKFINTFNDNRIERSRKITPELLLAIENSRISLVVFSKNYASSTWCLDELVKIQECYE 91

Query:    61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTE-KLQSWRNALKEAASLSSF 119
             +  Q+VIP+FY+VDPS VR Q G FG++F    E  K  TE + + W  AL E A L+  
Sbjct:    92 KLDQMVIPIFYKVDPSHVRKQTGEFGMVFG---ETCKGRTENEKRKWMRALAEVAHLAGE 148

Query:   120 HSLNMR 125
                N R
Sbjct:   149 DLRNWR 154

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2155801 AT5G58120 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 55/122 (45%), Positives = 76/122 (62%)

Query:     2 SRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKE 61
             S   I  F D  + R   I  +L  AI+ S IS+++ S+ YASSRWCLD+L++IL+ +++
Sbjct:    39 SYNGISMFNDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEILKCRED 98

Query:    62 YAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHS 121
               QIV+ VFY VDPSDVR Q G FGI F+K  E  K N E+ Q W  AL +  +++  H 
Sbjct:    99 IGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEG-KTN-EETQKWSKALNDVGNIAGEHF 156

Query:   122 LN 123
              N
Sbjct:   157 FN 158

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250017 tir-nbs-lrr resistance protein (1125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-31
pfam01582	135	pfam01582, TIR, TIR domain	6e-27
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-26
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	5e-11
pfam13676	102	pfam13676, TIR_2, TIR domain	1e-07

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  116 bits (291), Expect = 3e-31
 Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 2/123 (1%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L R+ I  F D+++ R   +   L  AI  S I+V++FS+ YASS WCL++L++I+  K+
Sbjct: 36  LDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKE 95

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFH 120
           E  Q+VIPVFY +DPS VR Q G FG  F K  +  K   EK+Q W+ AL + A++  +H
Sbjct: 96  ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN-KTEDEKIQ-WKQALTDVANILGYH 153

Query: 121 SLN 123
           S N
Sbjct: 154 SQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 96.6 bits (241), Expect = 6e-27
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 1   LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L  + I+  +DD     G+ I E+L  AIE S  ++++FS  YASS WCLD+LV+I++  
Sbjct: 22  LEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCA 81

Query: 60  KE--YAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALK 111
            E    ++++P+FY+VDPSDVR Q G FG  F K  +      +K++ W+ AL 
Sbjct: 82  LEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 95.1 bits (237), Expect = 3e-26
 Identities = 47/117 (40%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 1   LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           L    +  F+DD    G    E +  AIE S I++++ S  YA S WCLD+LV  LE   
Sbjct: 26  LRGYGLCVFIDD-FEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENAL 84

Query: 61  EYAQI-VIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116
           E   + VIP+FY V PSDVR Q G F  +F K   +     EK Q W+ AL    S 
Sbjct: 85  EEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLK-WPEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 56.8 bits (137), Expect = 5e-11
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 17/114 (14%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           LSR N++ F+D++ +  GD++ + + +AI    + V +FS  Y  S +CL +L  I+E K
Sbjct: 50  LSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK 109

Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEA 113
           K     VIP+F  V PS +R            + +      E+++ +  AL+EA
Sbjct: 110 KR----VIPIFCDVKPSQLR------------VVDNGTCPDEEIRRFNWALEEA 147

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 1  LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
          L    I+ ++D  +  G++  + +  A+ ++ + ++L S  Y +S WC  +    LE  K
Sbjct: 20 LEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLSPAYLASPWCRAEWGAALERGK 79

Query: 61 EYAQIVIPVFYRVDPSDV 78
               +IPV  R++  ++
Sbjct: 80 ----RLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.9
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.8
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.27
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.1
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	95.74
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	87.42
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	84.98
PF09441	175	Abp2: ARS binding protein 2; InterPro: IPR018562 T	80.68

>PLN03210 Resistant to P

Probab=100.00  E-value=8.5e-42  Score=308.22  Aligned_cols=123  Identities=41%  Similarity=0.739  Sum_probs=117.1

Q ss_pred             CCcCCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCccccc
Q 038213            1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRN   80 (125)
Q Consensus         1 L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr~   80 (125)
                      |.++||++|+|+++++|+.|++++++||++|+++|||||+|||+|+||||||++|++|+++++++|+||||+|+|||||+
T Consensus        36 l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~  115 (1153)
T PLN03210         36 LDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRK  115 (1153)
T ss_pred             HHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhh
Confidence            57899999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 038213           81 QMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR  125 (125)
Q Consensus        81 q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~  125 (125)
                      |+|.||++|.+|+++.  +.+++++||+||++||+++||++.+++
T Consensus       116 ~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210        116 QTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             ccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            9999999999998753  578999999999999999999997653

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=242.25  Aligned_cols=106  Identities=33%  Similarity=0.570  Sum_probs=97.5

Q ss_pred             CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcccc
Q 038213            1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVR   79 (125)
Q Consensus         1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr   79 (125)
                      |+++||+||+|+. +++|+.|.+.|.+||++|+++|||||+||++|+|||+||++|++|.    ..||||||+|+|+|||
T Consensus        50 L~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr  125 (187)
T PLN03194         50 LSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLR  125 (187)
T ss_pred             HHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhh
Confidence            5789999999997 9999999999999999999999999999999999999999999974    4799999999999999


Q ss_pred             cc-cCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccC
Q 038213           80 NQ-MGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN  123 (125)
Q Consensus        80 ~q-~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~  123 (125)
                      +| .|.             .+.+++++||+||++||+++|++++.
T Consensus       126 ~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194        126 VVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             ccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            97 443             24689999999999999999998764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.90  E-value=2.7e-25  Score=158.30  Aligned_cols=110  Identities=29%  Similarity=0.511  Sum_probs=96.7

Q ss_pred             CcC--CceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccC--ceeeeEEeecCCc
Q 038213            2 SRQ--NIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA--QIVIPVFYRVDPS   76 (125)
Q Consensus         2 ~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~--~~ViPVfy~v~ps   76 (125)
                      .++  |+++|++++ +.+|..+.+++.++|++||++|+|||+||++|.||++||..++++..+.+  .+|+||||+|.++
T Consensus        23 e~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~  102 (141)
T PF01582_consen   23 EERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPS  102 (141)
T ss_dssp             HCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CH
T ss_pred             HhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChh
Confidence            445  999999998 99999999999999999999999999999999999999999999987654  8999999999999


Q ss_pred             ccc-cccCcHHHHHHHHHHHhccC--hHHHHHHHHHHH
Q 038213           77 DVR-NQMGSFGILFSKLEERLKVN--TEKLQSWRNALK  111 (125)
Q Consensus        77 dVr-~q~g~f~~~f~~~~~~~~~~--~~~v~~W~~AL~  111 (125)
                      +|. .|++.|+..|..+......+  .++...|++++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen  103 DVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            999 79999999998777655433  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.80  E-value=3.1e-19  Score=125.21  Aligned_cols=113  Identities=37%  Similarity=0.610  Sum_probs=94.1

Q ss_pred             CCcCCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhc-cCceeeeEEeecCCcccc
Q 038213            1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKE-YAQIVIPVFYRVDPSDVR   79 (125)
Q Consensus         1 L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~-~~~~ViPVfy~v~psdVr   79 (125)
                      |...|+.+|.|+....|.... +|.++|++|+..|+|+|++|..|.||..|+..++++... ....||||+|+..|+++.
T Consensus        26 l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~  104 (140)
T smart00255       26 LRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVR  104 (140)
T ss_pred             hhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHH
Confidence            456799999998743333333 999999999999999999999999999999999987654 667999999999999999


Q ss_pred             cccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhc
Q 038213           80 NQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAAS  115 (125)
Q Consensus        80 ~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~  115 (125)
                      .+.+.++..+..+...+..+..+ ..|+.++..+++
T Consensus       105 ~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255      105 KQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             hcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            99999999998875555433333 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.27  E-value=2.7e-13  Score=90.88  Aligned_cols=68  Identities=29%  Similarity=0.516  Sum_probs=55.7

Q ss_pred             CCcCCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEee
Q 038213            1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYR   72 (125)
Q Consensus         1 L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~   72 (125)
                      |++.|+++|+|.++.+|+.+...+.++|++|+..|+++|++|..|.||..|+..+.+    .+..|+||..+
T Consensus        20 L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~~iipv~~~   87 (102)
T PF13676_consen   20 LESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGKPIIPVRLD   87 (102)
T ss_dssp             HHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSESEEEEECS
T ss_pred             HhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCCEEEEEEEC
Confidence            457899999997788999999999999999999999999999999999999988843    45589999843

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.10  E-value=0.00055  Score=58.73  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=56.4

Q ss_pred             CcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCcc--------CcHHHHHHHHHHHhhhhccCceeeeEEee
Q 038213            2 SRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYA--------SSRWCLDKLVKILEGKKEYAQIVIPVFYR   72 (125)
Q Consensus         2 ~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~--------~S~wCl~EL~~i~~~~~~~~~~ViPVfy~   72 (125)
                      .-+|++||+|-+ +..|+- .+.+++.|...+.+|.|++||-.        .-.|--.||...++|.+    .|+|||=.
T Consensus       636 QL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K----NIiPI~D~  710 (832)
T KOG3678|consen  636 QLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK----NIIPIFDT  710 (832)
T ss_pred             HhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC----Ceeeeecc
Confidence            457999999988 988864 45999999999999999999943        23455567777776654    89999843


Q ss_pred             ---------cCCccccc
Q 038213           73 ---------VDPSDVRN   80 (125)
Q Consensus        73 ---------v~psdVr~   80 (125)
                               +-|.|++-
T Consensus       711 aFE~Pt~ed~iPnDirm  727 (832)
T KOG3678|consen  711 AFEFPTKEDQIPNDIRM  727 (832)
T ss_pred             cccCCCchhcCcHHHHH
Confidence                     45666554

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=95.74  E-value=0.018  Score=40.34  Aligned_cols=51  Identities=20%  Similarity=0.376  Sum_probs=35.7

Q ss_pred             CCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEE
Q 038213           16 RGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVF   70 (125)
Q Consensus        16 ~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVf   70 (125)
                      ..+.|...|.++|..|.+.||+.|++=..|+|+-.|+...++    .+..||-|-
T Consensus        56 ~~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V~  106 (130)
T PF08937_consen   56 SSEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGVY  106 (130)
T ss_dssp             TTTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred             hHHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence            345788899999999999999999999999999999998886    344666664

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=87.42  E-value=0.97  Score=31.78  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCcC-CceeEeeCC-CC--CCCcchHHHHHHHHhcchhheecccC
Q 038213            1 LSRQ-NIQTFVDDQ-LS--RGDEISESLVNAIEASAISVILFSEG   41 (125)
Q Consensus         1 L~~~-gi~~f~D~~-~~--~G~~i~~~i~~aI~~Sri~IvV~S~n   41 (125)
                      |++. |+.|.+|.- ..  .+.....=+.+.|+++..+|||.|+.
T Consensus        25 L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~   69 (150)
T PF08357_consen   25 LRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPG   69 (150)
T ss_pred             HHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccc
Confidence            4566 999999986 53  35566667788899999999999943

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=84.98  E-value=0.7  Score=32.68  Aligned_cols=40  Identities=18%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             CcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccC
Q 038213            2 SRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEG   41 (125)
Q Consensus         2 ~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~n   41 (125)
                      +..|+.+.+-.. ...|..+.+.+.+.+.++..+||+++|+
T Consensus        21 ~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD   61 (125)
T PF10137_consen   21 EKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD   61 (125)
T ss_pred             HhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence            345676666665 7889999999999999999999999985

Their exact function has not, as yet, been defined.

>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element

Probab=80.68  E-value=0.73  Score=34.25  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHhhhhccCceeeeEEeecCCccccc-ccCcHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 038213           44 SSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRN-QMGSFGILFSKLEERLKVNTEKLQSWRNALKE  112 (125)
Q Consensus        44 ~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr~-q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~  112 (125)
                      -|.|-|-||..-++..+-+.=.=|-+.++|+|-++.+ |+.          ++.+...-+.++|+.|+.-
T Consensus        53 Fs~~~Lf~LI~k~~~keikTW~~La~~LGVepp~~ek~qSt----------QKvqQYaVRLKRWM~aMHV  112 (175)
T PF09441_consen   53 FSTFTLFELIRKLESKEIKTWAQLALELGVEPPDPEKGQST----------QKVQQYAVRLKRWMRAMHV  112 (175)
T ss_pred             chHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCCcccccch----------HHHHHHHHHHHHHHHHhhH
Confidence            3689999999888766544444455677999998876 431          2222235788999999863

It may play a role in regulating the cell cycle response to stress signals [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-21
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-18

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 1   LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L R  I TF DD +L +G EI  +L+ AI+ S I V + S GYA S+WCL +L +I+  +
Sbjct: 59  LRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQ 118
Query: 60  KEYA-QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSS 118
           +E   +I++P+FY VDPSDVR+Q G +   F K     K + + +Q+W++ALK+   L  
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN--KFDGQTIQNWKDALKKVGDLKG 176
Query: 119 FH 120
           +H
Sbjct: 177 WH 178

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 1   LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L R++I+TF DD +L  G   S  L + IE S  +V++ SE YA+S WCLD+LV I++ +
Sbjct: 32  LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91
Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLS 117
           K+ +  V+P+FY V+P+ VR Q G     F K   R   + EK+  WR AL   A LS
Sbjct: 92  KKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLS 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-59
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-57
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-46
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	3e-08

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  180 bits (459), Expect = 1e-59
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L R++I+TF DD+ L  G   S  L + IE S  +V++ SE YA+S WCLD+LV I++ +
Sbjct: 32  LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91

Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
           K+ +  V+P+FY V+P+ VR Q G     F K   R   + EK+  WR AL   A LS  
Sbjct: 92  KKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGD 149

Query: 120 HS 121
            S
Sbjct: 150 CS 151

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  175 bits (447), Expect = 1e-57
 Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 4/127 (3%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L R  I TF DD  L +G EI  +L+ AI+ S I V + S GYA S+WCL +L +I+  +
Sbjct: 59  LRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQ 118

Query: 60  KEY-AQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSS 118
           +E   +I++P+FY VDPSDVR+Q G +   F K   +   + + +Q+W++ALK+   L  
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK--FDGQTIQNWKDALKKVGDLKG 176

Query: 119 FHSLNMR 125
           +H     
Sbjct: 177 WHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  144 bits (366), Expect = 6e-46
 Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 1   LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
           L     + + DD  L  GD +  S+   + +S   +++ S  +    W   +L  + + +
Sbjct: 43  LRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLE 102

Query: 60  KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNAL 110
                 ++P++++V   +V +   +     +       V  +++ +   A+
Sbjct: 103 SSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSV--DEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 2   SRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
           S  +++ F+  +  + G  I   L  A+ +S   V+L + G+    WC  ++++ L    
Sbjct: 35  STASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAP 94

Query: 61  EYAQIVIPVFYRVDPSDVRNQMG 83
                 IP+   +  +    ++ 
Sbjct: 95  GAEGCTIPLLSGLSRAAYPPELR 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.94
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.83
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.75
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.72
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.72
2js7_A	160	Myeloid differentiation primary response protein M	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.41
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	88.68
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	84.26

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=3.5e-48  Score=293.09  Aligned_cols=123  Identities=41%  Similarity=0.750  Sum_probs=116.5

Q ss_pred             CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhc-cCceeeeEEeecCCccc
Q 038213            1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKE-YAQIVIPVFYRVDPSDV   78 (125)
Q Consensus         1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~-~~~~ViPVfy~v~psdV   78 (125)
                      |.++||++|+|++ +++|+.|.++|++||++|+++|||||+||++|.|||+||++|++|+++ ++++||||||+|+|++|
T Consensus        59 L~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~V  138 (204)
T 3ozi_A           59 LRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDV  138 (204)
T ss_dssp             HHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHH
T ss_pred             HHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHH
Confidence            5689999999987 999999999999999999999999999999999999999999999875 68999999999999999


Q ss_pred             ccccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 038213           79 RNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR  125 (125)
Q Consensus        79 r~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~  125 (125)
                      |+|+|.||++|.+|++++  +.+++++||.||++||+++||++.+++
T Consensus       139 r~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~  183 (204)
T 3ozi_A          139 RHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND  183 (204)
T ss_dssp             HHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred             HhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCC
Confidence            999999999999999876  478999999999999999999998763

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-48  Score=288.74  Aligned_cols=120  Identities=43%  Similarity=0.674  Sum_probs=102.8

Q ss_pred             CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcccc
Q 038213            1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVR   79 (125)
Q Consensus         1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr   79 (125)
                      |+++||++|+|++ +++|+.|.++|.+||++|+++|||||+||++|+|||+||++|++|+++++++||||||+|+|+|||
T Consensus        32 L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr  111 (176)
T 3jrn_A           32 LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVR  111 (176)
T ss_dssp             HHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHH
T ss_pred             HHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhh
Confidence            5689999999987 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeecc
Q 038213           80 NQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSL  122 (125)
Q Consensus        80 ~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~  122 (125)
                      +|+|+||++|.+|+++  .+.+++++||.||++||+++||++.
T Consensus       112 ~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A          112 WQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             hccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999999999987  4689999999999999999999984

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.94  E-value=2e-29  Score=181.62  Aligned_cols=108  Identities=15%  Similarity=0.269  Sum_probs=93.9

Q ss_pred             CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcccc
Q 038213            1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVR   79 (125)
Q Consensus         1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr   79 (125)
                      |+++||++|+|+. +.+|+.+.++|.+||++|+++|+|+|+||++|.||++||..+++|...+++.||||||+|+|++|+
T Consensus        43 L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~  122 (154)
T 3h16_A           43 LRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVA  122 (154)
T ss_dssp             HHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGT
T ss_pred             HHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHh
Confidence            4678999999998 999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             cccCcHHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 038213           80 NQMGSFGILFSKLEERLKVNTEKLQSWRNALKEA  113 (125)
Q Consensus        80 ~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v  113 (125)
                      +|+|.|+++|.....     ...+..+-+.|.++
T Consensus       123 ~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A          123 SFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             TTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             hCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            999999988764322     23345555555443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.83  E-value=3.7e-23  Score=148.48  Aligned_cols=104  Identities=17%  Similarity=0.325  Sum_probs=67.9

Q ss_pred             CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcc----c
Q 038213            4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSD----V   78 (125)
Q Consensus         4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psd----V   78 (125)
                      +|+++|+|++ +.+|+.+.++|.+||++||.+|+|||+||++|.||+.||..++++...+...||||||+|++++    +
T Consensus        37 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~L  116 (146)
T 3ub2_A           37 ASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPEL  116 (146)
T ss_dssp             ----------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGG
T ss_pred             CCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHH
Confidence            6999999998 9999999999999999999999999999999999999999999986433336779999998544    5


Q ss_pred             ccccCcHHHHHHHHHHHhccChHHHHHHHHHH
Q 038213           79 RNQMGSFGILFSKLEERLKVNTEKLQSWRNAL  110 (125)
Q Consensus        79 r~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL  110 (125)
                      +........   .+...|....+.|.+|++||
T Consensus       117 r~~~~id~~---~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A          117 RFMYYVDGR---GPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             GGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred             hCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence            655432211   12223333357889999886

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.75  E-value=6.7e-20  Score=131.49  Aligned_cols=75  Identities=17%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHh-hhhccCceeeeEEee-cCCccc
Q 038213            4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILE-GKKEYAQIVIPVFYR-VDPSDV   78 (125)
Q Consensus         4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~-~~~~~~~~ViPVfy~-v~psdV   78 (125)
                      .|+++|+|++ +.+|+.+.++|.+||++|+++|+|+|+||++|.||+.||..++. +.+.+++.||||||+ +++..+
T Consensus        33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            3999999998 99999999999999999999999999999999999999999986 556677899999995 555444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.72  E-value=3.5e-19  Score=131.55  Aligned_cols=70  Identities=21%  Similarity=0.367  Sum_probs=60.3

Q ss_pred             CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhh-hhccCceeeeEEeec
Q 038213            4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEG-KKEYAQIVIPVFYRV   73 (125)
Q Consensus         4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~-~~~~~~~ViPVfy~v   73 (125)
                      +|+++|+|++ +.+|+.+.++|.+||++|+.+|+|||+||++|.||+.||..++.+ .+.+++.||||||+-
T Consensus        63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~  134 (178)
T 2j67_A           63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP  134 (178)
T ss_dssp             -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSC
T ss_pred             CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence            8999999998 999999999999999999999999999999999999999999974 456778999999964

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.72  E-value=1.1e-18  Score=126.58  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             cCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCcc-CcHHHHHHHHHHHhhh-hccCceeeeEEeecCCc
Q 038213            3 RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYA-SSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDPS   76 (125)
Q Consensus         3 ~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~-~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~ps   76 (125)
                      ++|+++|+|++ +.+|+.+.++|.++|++||.+|+|+|+||+ .|.||+.|+..++.+. ..+++.||||||+-.+.
T Consensus        39 ~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           39 HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            68999999998 999999999999999999999999999996 9999999999999875 66788999999976554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.70  E-value=6.4e-19  Score=127.94  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             CCceeEeeCC-CCCCCcchHHHHHHHH-hcchhheecccCccCcHHHHHHHHHHHhhh-hccCceeeeEEeecCC
Q 038213            4 QNIQTFVDDQ-LSRGDEISESLVNAIE-ASAISVILFSEGYASSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDP   75 (125)
Q Consensus         4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~-~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~p   75 (125)
                      .|+++|+|++ +.+|+.+.++|.++|+ .|+.+|+|+|+||++|.||+.|+..++++. +.+++.||||||+.-+
T Consensus        43 ~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           43 YRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             SCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             CceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            5799999998 9999999999999999 799999999999999999999999999875 4566799999998653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.41  E-value=7.8e-14  Score=120.77  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             cCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhh-hccCceeeeEEeecCCc
Q 038213            3 RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDPS   76 (125)
Q Consensus         3 ~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~ps   76 (125)
                      +.|+++|++++ +.+|+.+.++|.+||++||..|+|+|++|+.|.||..|+..++.+. +++++.||||||+--|.
T Consensus       700 ~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          700 QNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             CCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            57899999998 9999999999999999999999999999999999999999998754 67788999999975543

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=88.68  E-value=0.57  Score=34.48  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             CcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeec-CCcccccccCcHH
Q 038213           18 DEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRV-DPSDVRNQMGSFG   86 (125)
Q Consensus        18 ~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v-~psdVr~q~g~f~   86 (125)
                      ..|-+.|.+.|..|+..|+++|++...|.|-..|+..+++   +.+..||-|.-+- +.+++..-.|+|.
T Consensus        67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~  133 (189)
T 3hyn_A           67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK  133 (189)
T ss_dssp             TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence            4678899999999999999999999999999999888772   2345677665332 2345555455543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=84.26  E-value=0.33  Score=32.60  Aligned_cols=31  Identities=10%  Similarity=-0.094  Sum_probs=26.0

Q ss_pred             HHHhcchhheecccCccCcHHHHHHHHHHHh
Q 038213           27 AIEASAISVILFSEGYASSRWCLDKLVKILE   57 (125)
Q Consensus        27 aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~   57 (125)
                      .|+.|.+.||..+++-..|+||..|+....+
T Consensus        35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~   65 (111)
T 1eiw_A           35 TPEDADAVIVLAGLWGTRRDEILGAVDLARK   65 (111)
T ss_dssp             CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred             ccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence            4667888888888988999999999976654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-06

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 3   RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKIL-EGKK 60
               +  +  +    G  I ++++++IE S  +V + SE +  S WC  +L         
Sbjct: 32  NPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFD 91

Query: 61  EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNT 100
           E     I +           Q       F KL + +   T
Sbjct: 92  ENNDAAILILLEPIEKKAIPQR------FCKLRKIMNTKT 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.53
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.5

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-16  Score=110.81  Aligned_cols=76  Identities=22%  Similarity=0.420  Sum_probs=68.0

Q ss_pred             CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhh-hccCceeeeEEeecCCc
Q 038213            1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDPS   76 (125)
Q Consensus         1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~ps   76 (125)
                      |+++|+++|+|++ +.+|+.+.++|.+||++|+..|+|+|++|..|.||..|+..++++. +.+...+|||+++--|.
T Consensus        35 Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~~~~~  112 (161)
T d1fyva_          35 LEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQ  112 (161)
T ss_dssp             HHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCCCSCSSCSSEEEEESSCCCG
T ss_pred             HHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHHHHHHHHHcCCCceeEEEEecCch
Confidence            4678999999998 9999999999999999999999999999999999999999998765 45667899999975443

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-15  Score=106.30  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=66.8

Q ss_pred             cCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhh-hhccCceeeeEEeecCCccccc
Q 038213            3 RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEG-KKEYAQIVIPVFYRVDPSDVRN   80 (125)
Q Consensus         3 ~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~-~~~~~~~ViPVfy~v~psdVr~   80 (125)
                      ..|+++|+|++ +.+|+.+..+|.++|+.|+..|+|+|++|..|.||..|+..++.. .+.++..+|||+++-.|.....
T Consensus        32 ~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          32 NPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             SSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             CCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHHHHHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            35999999988 999999999999999999999999999999999999999877653 4567789999999754444333