Citrus Sinensis ID: 038216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
AAAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHccEEEcccEEEccccccccEEEEEEEEEEEEEEEccccHHHHHHHHHHHccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHHHHHHHccccccEEEEEEEEEEEEccEEEEEEEEEEEcccccHHHHHHHHEccccHHHHHEEcEEEEEccc
Coil and Loop (DISEMBL)
aaaadddnddvdlfgeetEEDKKAAEERSAAIKASAKRkesgkssvlldikpwndetdMQKLEEAVRSIKMEglhwgasklvpvgygIKKLQIMLTIVDDLVSVDNLIEehlmaepineyvqSCDIVAFNKI
Flexible Loop (DISEMBL)
aaaadddnddvdlfgeeteedkkaaEERSAAikasakrkesgkssvlldikpwndetdMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLmaepineyvqscDIVAFNKI
Low Complexity Region (SEG)
aaaadddnddvdLFGeeteedkkaaeersaaikasakrkesGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Disordered region (IsUnstruct)
*************************************************I*************EAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAF***
Disordered Region (DISOPRED)
*****DD**DVDLF********************************LLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Disordered Region (DISEMBL)
*********DVDLFGE****************************SVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Disordered Region (DISPRO)
***********DLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AAAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P93447	226	Elongation factor 1-delta	N/A	no	0.909	0.530	0.841	9e-55
Q84WM9	228	Elongation factor 1-beta	yes	no	0.909	0.526	0.783	1e-46
Q9SI20	231	Elongation factor 1-delta	no	no	0.909	0.519	0.841	1e-46
P29545	224	Elongation factor 1-beta	yes	no	0.901	0.531	0.808	2e-46
P48006	231	Elongation factor 1-delta	no	no	0.909	0.519	0.833	3e-46
Q40680	229	Elongation factor 1-delta	no	no	0.909	0.524	0.833	9e-45
Q40682	226	Elongation factor 1-delta	no	no	0.909	0.530	0.825	4e-44
Q9SCX3	224	Elongation factor 1-beta	no	no	0.924	0.544	0.778	6e-42
O81918	231	Elongation factor 1-delta	N/A	no	0.696	0.398	0.847	6e-41
P29546	216	Elongation factor 1-beta	N/A	no	0.848	0.518	0.793	1e-39

>sp|P93447|EF1D_PIMBR Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3

 Score =  211 bits (538), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 114/120 (95%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKA+EER+AA+KAS K+KESGKSSVLLD+KPW+DETDM KLEEAVRSIKM+
Sbjct: 107 LFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMD 166

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLV VGYGIKKLQIMLTIVDDLVSVD+L+E++L AEP NEY+QSCDIVAFNKI
Sbjct: 167 GLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.
Pimpinella brachycarpa (taxid: 45043)

>sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 108/120 (90%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LF +ETE++KKAAEER AA K + K KESGKSSVLL++KPW+DETDM+KLEEAVRS++M 
Sbjct: 109 LFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMP 168

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKL IM+TIVDDLVSVDNLIE+HL +EP NEY+QS DIVAFNKI
Sbjct: 169 GLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI20|EF1D2_ARATH Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 112/120 (93%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKAAEER+A++KAS K+KESGKSSVL+DIKPW+DETDM+KLEEAVRSI+ME
Sbjct: 112 LFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQME 171

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKL IM TIVDDLVS+D +IEE L  EPINEYVQSCDIVAFNKI
Sbjct: 172 GLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|P29545|EF1B_ORYSJ Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 111/120 (92%), Gaps = 1/120 (0%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFG+ETEEDKKAA+ER+A+  +S K++   KSSVLLD+KPW+DETDM+KLEEAVRS++ME
Sbjct: 106 LFGDETEEDKKAADERAASKASSKKKESG-KSSVLLDVKPWDDETDMKKLEEAVRSVQME 164

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKLQIMLTIVDDLVSVD+LIEEHL  EPINE+VQSCDIVAFNKI
Sbjct: 165 GLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48006|EF1D1_ARATH Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 113/120 (94%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKAAEER+A++KAS K+KESGKSSVL+DIKPW+DETDM+KLEEAV+SI+ME
Sbjct: 112 LFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQME 171

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKLQI+ TIVDDLVS+D +IEE L  EPINEYVQSCDIVAFNKI
Sbjct: 172 GLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40680|EF1D1_ORYSJ Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3

 Score =  178 bits (451), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 113/120 (94%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKAAEER+AA+KAS K+KESGKSSVLLD+KPW+DETDM KLEEAVR++KME
Sbjct: 110 LFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKME 169

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+QSCDIVAFNKI
Sbjct: 170 GLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40682|EF1D2_ORYSJ Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 113/120 (94%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKAAEER+AA+KAS K+KESGKSSVLLD+KPW+DETDM KLEEAVR++KME
Sbjct: 107 LFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKME 166

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++QSCDIVAFNKI
Sbjct: 167 GLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCX3|EF1B2_ARATH Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 108/122 (88%)

Query: 11  VDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIK 70
           +DLFG+ETEE+KKAAEER AA K + K KESGKSSVL+D+KPW+DETDM+KLEEAVR ++
Sbjct: 103 MDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVE 162

Query: 71  MEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFN 130
           M GL WGASKLVPVGYGIKKL IM TIVDDLVS DNLIE+ L +EP NEY+QSCDIVAFN
Sbjct: 163 MPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFN 222

Query: 131 KI 132
           KI
Sbjct: 223 KI 224

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|O81918|EF1D_BETVU Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3

 Score =  166 bits (419), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 86/92 (93%)

Query: 41  SGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDD 100
           SGKSSVLLD+KPW+DETDM+KLEEAVRS++ EGL  GASKLVPVGYGIKKL IM+TIVDD
Sbjct: 140 SGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDD 199

Query: 101 LVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           LVSVDNLIE++L  EPINEYVQSCDIVAFNKI
Sbjct: 200 LVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Beta vulgaris (taxid: 161934)

>sp|P29546|EF1B_WHEAT Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 100/116 (86%), Gaps = 4/116 (3%)

Query: 17  ETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHW 76
           ETEEDKKAA ER AA    AK+KESGKSSVL+DIKPW+DETDM+KLEEAVRS++MEGL W
Sbjct: 105 ETEEDKKAAAEREAA--KPAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLTW 162

Query: 77  GASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GASKL+PVGYGIKKLQIMLTI+DDL S    IEE L   PINEYVQSCDIVAFNKI
Sbjct: 163 GASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
6015064	226	RecName: Full=Elongation factor 1-delta;	0.909	0.530	0.841	7e-53
242040623	226	hypothetical protein SORBIDRAFT_01g03287	0.992	0.579	0.778	1e-51
351724085	224	uncharacterized protein LOC100306132 [Gl	0.893	0.526	0.840	4e-50
357493769	223	Elongation factor 1-beta [Medicago trunc	0.893	0.529	0.806	3e-48
388497178	223	unknown [Medicago truncatula]	0.893	0.529	0.806	3e-48
378464888	231	translation elongation factor [Ammopipta	1.0	0.571	0.863	6e-48
406870043	224	translation elongation factor EF-1 betac	1.0	0.589	0.810	9e-48
192910732	224	translation elongation factor EF-1 beta	1.0	0.589	0.810	1e-47
357121602	219	PREDICTED: elongation factor 1-beta-like	0.856	0.515	0.834	1e-46
116779267	224	unknown [Picea sitchensis]	0.909	0.535	0.858	2e-46

>gi|6015064|sp|P93447.3|EF1D_PIMBR RecName: Full=Elongation factor 1-delta; Short=EF-1-delta; AltName: Full=Elongation factor 1B-beta; AltName: Full=eEF-1B beta gi|1841870|gb|AAB68395.1| elongation factor 1-beta [Pimpinella brachycarpa]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 114/120 (95%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKA+EER+AA+KAS K+KESGKSSVLLD+KPW+DETDM KLEEAVRSIKM+
Sbjct: 107 LFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMD 166

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKLV VGYGIKKLQIMLTIVDDLVSVD+L+E++L AEP NEY+QSCDIVAFNKI
Sbjct: 167 GLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226

Source: Pimpinella brachycarpa

Species: Pimpinella brachycarpa

Genus: Pimpinella

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242040623|ref|XP_002467706.1| hypothetical protein SORBIDRAFT_01g032875 [Sorghum bicolor] gi|241921560|gb|EER94704.1| hypothetical protein SORBIDRAFT_01g032875 [Sorghum bicolor]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 120/131 (91%)

Query: 2   AAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQK 61
           A A D++DDVDLFG+ETEE+  A + R+AA+KAS K+KESGKSS+LLD+KPW+DET+MQK
Sbjct: 96  APAVDEDDDVDLFGKETEEEHAATDARAAAVKASGKKKESGKSSILLDVKPWDDETEMQK 155

Query: 62  LEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV 121
           LEEAVRS+KMEGL WGASKLVPVGYGIKK+QIM+TIVDDLVSVD+LIE+HL  EP NEY+
Sbjct: 156 LEEAVRSVKMEGLLWGASKLVPVGYGIKKMQIMMTIVDDLVSVDSLIEDHLCTEPANEYI 215

Query: 122 QSCDIVAFNKI 132
           QSCDIVAFNKI
Sbjct: 216 QSCDIVAFNKI 226

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724085|ref|NP_001238069.1| uncharacterized protein LOC100306132 [Glycine max] gi|255627641|gb|ACU14165.1| unknown [Glycine max]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 108/119 (90%), Gaps = 1/119 (0%)

Query: 14  FGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEG 73
           FG+ETEEDKKAAEER AA K S K+KE GKSSVLLD+KPW+DETDM+KLEEAVRS++M G
Sbjct: 107 FGDETEEDKKAAEEREAA-KKSTKKKERGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPG 165

Query: 74  LHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           L WGASKLVPVGYGIKKLQIMLTIVDDLVSVD L+EE L  EPINEYVQSCDIVAFNKI
Sbjct: 166 LLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLVEETLTVEPINEYVQSCDIVAFNKI 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493769|ref|XP_003617173.1| Elongation factor 1-beta [Medicago truncatula] gi|217075368|gb|ACJ86044.1| unknown [Medicago truncatula] gi|217075392|gb|ACJ86056.1| unknown [Medicago truncatula] gi|355518508|gb|AET00132.1| Elongation factor 1-beta [Medicago truncatula] gi|388514225|gb|AFK45174.1| unknown [Medicago truncatula]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 109/119 (91%), Gaps = 1/119 (0%)

Query: 14  FGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEG 73
           FG+ETEEDKKAAEER A+ K  AK+KESGKSS+LLD+KPW+DETDM+KLEEAVR++++ G
Sbjct: 106 FGDETEEDKKAAEEREAS-KKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRTVEIPG 164

Query: 74  LHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           L WGASKLV VGYGIKKLQIMLTI+DDLVSVD+LIEE L  EPINEYVQSCDIVAFNKI
Sbjct: 165 LTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497178|gb|AFK36655.1| unknown [Medicago truncatula]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 109/119 (91%), Gaps = 1/119 (0%)

Query: 14  FGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEG 73
           FG+ETEEDKKAAEER A+ K  AK+KESGKSS+LLD+KPW+DETDM+KLEEAVR++++ G
Sbjct: 106 FGDETEEDKKAAEEREAS-KKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRTVEIPG 164

Query: 74  LHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           L WGASKLV VGYGIKKLQIMLTI+DDLVSVD+LIEE L  EPINEYVQSCDIVAFNKI
Sbjct: 165 LTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378464888|gb|AFC01201.1| translation elongation factor [Ammopiptanthus mongolicus]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/132 (86%), Positives = 126/132 (95%)

Query: 1   AAAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQ 60
           A AA+DD+DDVDLFGEETEE+KKAAEER+A++KAS K+KESGKSSVLLD+KPW+DETDM+
Sbjct: 100 ATAAEDDDDDVDLFGEETEEEKKAAEERAASVKASVKKKESGKSSVLLDVKPWDDETDMK 159

Query: 61  KLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY 120
           KL+EAVRS+ MEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEE L  EPINEY
Sbjct: 160 KLKEAVRSVSMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEQLQVEPINEY 219

Query: 121 VQSCDIVAFNKI 132
           VQSCDIVAFNKI
Sbjct: 220 VQSCDIVAFNKI 231

Source: Ammopiptanthus mongolicus

Species: Ammopiptanthus mongolicus

Genus: Ammopiptanthus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406870043|gb|AFS65095.1| translation elongation factor EF-1 betachain [Elaeis guineensis]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 121/132 (91%)

Query: 1   AAAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQ 60
           +A A +D+DD+DLFGEETEE+KK A ER AA+KAS+K+KESGKSSVL+DIKPW+DETDM+
Sbjct: 93  SAKATEDDDDIDLFGEETEEEKKVAAEREAAVKASSKKKESGKSSVLMDIKPWDDETDMK 152

Query: 61  KLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY 120
           KLEEAVRSI+M GL WGASKLVPVGYGIKKLQIMLTIVDDLVSVD+LIEEHL  E  +EY
Sbjct: 153 KLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVESCSEY 212

Query: 121 VQSCDIVAFNKI 132
           VQSCDIVAFNKI
Sbjct: 213 VQSCDIVAFNKI 224

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910732|gb|ACF06474.1| translation elongation factor EF-1 beta chain [Elaeis guineensis]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 121/132 (91%)

Query: 1   AAAADDDNDDVDLFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQ 60
           +A A +D+DD+DLFGEETEE+KK A ER AA+KAS+K+KESGKSSVL+DIKPW+DETDM+
Sbjct: 93  SAKATEDDDDIDLFGEETEEEKKVAAEREAAVKASSKKKESGKSSVLMDIKPWDDETDMK 152

Query: 61  KLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY 120
           KLEEAVRSI+M GL WGASKLVPVGYGIKKLQIMLTIVDDLVSVD+LIEE L  EP +EY
Sbjct: 153 KLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEDLTVEPCSEY 212

Query: 121 VQSCDIVAFNKI 132
           VQSCDIVAFNKI
Sbjct: 213 VQSCDIVAFNKI 224

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121602|ref|XP_003562507.1| PREDICTED: elongation factor 1-beta-like isoform 1 [Brachypodium distachyon]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 104/115 (90%), Gaps = 2/115 (1%)

Query: 18  TEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWG 77
           TE+DKKAAEER AA    AK+KESGKSSVL+D+KPW+DETDM+KLEEAVRS++MEGL WG
Sbjct: 107 TEDDKKAAEERVAA--KPAKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSVQMEGLTWG 164

Query: 78  ASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           ASKLV VGYGIKKLQIMLTIVDDLVSVD LIEE L  EPINEYVQSCDIVAFNKI
Sbjct: 165 ASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEEVLCEEPINEYVQSCDIVAFNKI 219

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779267|gb|ABK21209.1| unknown [Picea sitchensis]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 113/120 (94%)

Query: 13  LFGEETEEDKKAAEERSAAIKASAKRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKME 72
           LFGEETEE+KKAAEERSAA+KAS K+KESGKSSVLLD+KPW+DETDMQKLEE VRSIKME
Sbjct: 105 LFGEETEEEKKAAEERSAAVKASIKKKESGKSSVLLDVKPWDDETDMQKLEETVRSIKME 164

Query: 73  GLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           GL WGASKL+PVGYGIKKLQIM+TI DDLVSVD+LIE+ L AEP NEY+QSCDIVAFNKI
Sbjct: 165 GLFWGASKLIPVGYGIKKLQIMMTIEDDLVSVDDLIEDCLTAEPANEYIQSCDIVAFNKI 224

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2053144	231	AT2G18110 [Arabidopsis thalian	0.689	0.393	0.857	8.9e-38
TAIR|locus:2009807	260	eEF-1Bb1 "eukaryotic elongatio	0.689	0.35	0.846	1.1e-37
TAIR|locus:2177038	228	AT5G12110 [Arabidopsis thalian	0.689	0.399	0.824	1.7e-36
TAIR|locus:2180806	224	AT5G19510 [Arabidopsis thalian	0.689	0.406	0.802	1.2e-35
UNIPROTKB|Q5E983	225	EEF1B "Elongation factor 1-bet	0.659	0.386	0.655	1.9e-26
ZFIN|ZDB-GENE-040426-2740	267	eef1da "elongation factor-1, d	0.659	0.325	0.677	2.5e-26
UNIPROTKB|E1BZG4	287	EEF1D "Uncharacterized protein	0.659	0.303	0.644	3.2e-26
FB|FBgn0028737	222	Ef1beta "Elongation factor 1 b	0.659	0.391	0.655	5.2e-26
UNIPROTKB|F1NYA9	224	EEF1B2 "Uncharacterized protei	0.659	0.388	0.644	5.2e-26
UNIPROTKB|Q9YGQ1	225	EEF1B "Elongation factor 1-bet	0.659	0.386	0.644	5.2e-26

TAIR|locus:2053144 AT2G18110 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 78/91 (85%), Positives = 84/91 (92%)

Query:    42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
             GKSSVL+DIKPW+DETDM+KLEEAVRSI+MEGL WGASKLVPVGYGIKKL IM TIVDDL
Sbjct:   141 GKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDL 200

Query:   102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
             VS+D +IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   201 VSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2009807 eEF-1Bb1 "eukaryotic elongation factor 1B beta 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:    42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
             GKSSVL+DIKPW+DETDM+KLEEAV+SI+MEGL WGASKLVPVGYGIKKLQI+ TIVDDL
Sbjct:   141 GKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDL 200

Query:   102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
             VS+D +IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   201 VSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0071668 "plant-type cell wall assembly" evidence=IMP

GO:2001006 "regulation of cellulose biosynthetic process" evidence=IMP

TAIR|locus:2177038 AT5G12110 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 75/91 (82%), Positives = 85/91 (93%)

Query:    42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
             GKSSVLL++KPW+DETDM+KLEEAVRS++M GL WGASKLVPVGYGIKKL IM+TIVDDL
Sbjct:   138 GKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDL 197

Query:   102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
             VSVDNLIE+HL +EP NEY+QS DIVAFNKI
Sbjct:   198 VSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2180806 AT5G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query:    42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
             GKSSVL+D+KPW+DETDM+KLEEAVR ++M GL WGASKLVPVGYGIKKL IM TIVDDL
Sbjct:   134 GKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDL 193

Query:   102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
             VS DNLIE+ L +EP NEY+QSCDIVAFNKI
Sbjct:   194 VSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|Q5E983 EEF1B "Elongation factor 1-beta" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 59/90 (65%), Positives = 71/90 (78%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD V
Sbjct:   139 KSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D ++EE + A   +EYVQS D+ AFNKI
Sbjct:   199 GTD-MLEEQITA--FDEYVQSMDVAAFNKI 225

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2740 eef1da "elongation factor-1, delta, a" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/90 (67%), Positives = 69/90 (76%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSS+LLD+KPW+DETDM KLEE VRS++M+GL WGASKLVPVGYGIKKLQI   + DD V
Sbjct:   181 KSSILLDVKPWDDETDMSKLEECVRSVQMDGLLWGASKLVPVGYGIKKLQINCVVEDDKV 240

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D L EE    E   +YVQS DI AFNKI
Sbjct:   241 GTDILEEEITQFE---DYVQSVDIAAFNKI 267

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1BZG4 EEF1D "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSS+LLD+KPW+DETDM K+EE VRS++M+GL WGASKLVPVGYGIKKLQI   + DD V
Sbjct:   201 KSSILLDVKPWDDETDMAKMEECVRSVQMDGLVWGASKLVPVGYGIKKLQIQCVVEDDKV 260

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D ++EE +      +YVQS DI AFNKI
Sbjct:   261 GTD-ILEEEITK--FEDYVQSVDIAAFNKI 287

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

FB|FBgn0028737 Ef1beta "Elongation factor 1 beta" [Drosophila melanogaster (taxid:7227)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 59/90 (65%), Positives = 73/90 (81%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSSVLLD+KPW+DETDM+++E  VR+I+M+GL WGASKLVPVGYGI KLQIM  I DD V
Sbjct:   136 KSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKV 195

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
             S+D L++E +  E   ++VQS DI AFNKI
Sbjct:   196 SID-LLQEKI--EEFEDFVQSVDIAAFNKI 222

GO:0003747 "translation release factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS;NAS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS;NAS

GO:0006414 "translational elongation" evidence=IEA;ISS;NAS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1NYA9 EEF1B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD V
Sbjct:   138 KSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 197

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D ++EE + A    +YVQS D+ AFNKI
Sbjct:   198 GTD-MLEERITA--FEDYVQSMDVAAFNKI 224

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

UNIPROTKB|Q9YGQ1 EEF1B "Elongation factor 1-beta" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)

Query:    43 KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
             KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD V
Sbjct:   139 KSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198

Query:   103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D ++EE + A    +YVQS D+ AFNKI
Sbjct:   199 GTD-MLEEQITA--FEDYVQSMDVAAFNKI 225

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84WM9	EF1B1_ARATH	No assigned EC number	0.7833	0.9090	0.5263	yes	no
P29545	EF1B_ORYSJ	No assigned EC number	0.8083	0.9015	0.5312	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb01g032875.1	hypothetical protein (226 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb03g009210.1	annotation not avaliable (202 aa)				•					0.524
	Sb07g001570.1	hypothetical protein (110 aa)				•					0.512
	Sb03g006610.1	hypothetical protein (158 aa)				•					0.500
	Sb10g000700.1	hypothetical protein (191 aa)				•					0.449
	Sb10g006620.1	hypothetical protein (143 aa)				•					0.440
	Sb02g038990.1	hypothetical protein (232 aa)				•					0.424
	Sb07g004290.1	hypothetical protein (229 aa)				•					0.422
	Sb06g021660.1	annotation not avaliable (153 aa)				•					0.421
	Sb10g022570.1	hypothetical protein (418 aa)				•	•	•			0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
cd00292	88	cd00292, EF1B, Elongation factor 1 beta (EF1B) gua	3e-32
pfam00736	87	pfam00736, EF1_GNE, EF-1 guanine nucleotide exchan	1e-28
smart00888	88	smart00888, EF1_GNE, EF-1 guanine nucleotide excha	2e-24
COG2092	88	COG2092, EFB1, Translation elongation factor EF-1b	6e-13

>gnl|CDD|238181 cd00292, EF1B, Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

 Score =  109 bits (274), Expect = 3e-32
 Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 4/92 (4%)

Query: 41  SGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDD 100
             KS V+L +KPW+DE D+ +LEE +R+I M+GL WG SKL P+ +G+K LQI   + DD
Sbjct: 1   MAKSLVVLKVKPWDDEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDD 60

Query: 101 LVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D L E  +  E   + VQS D+ AFNK+
Sbjct: 61  EGGTDELEEA-ISEE---DGVQSVDVEAFNKL 88

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction. Length = 88

>gnl|CDD|201421 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 99.9 bits (250), Expect = 1e-28
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 6/91 (6%)

Query: 44  SSVLLDIKPWNDETDMQKLEEAV-RSIKMEGLHWG-ASKLVPVGYGIKKLQIMLTIVDDL 101
           SSV+L +KPW+DETD+++LE+ V R I M+GL WG ASKL P+ +G+KKLQI   + DD 
Sbjct: 1   SSVVLKVKPWDDETDLEELEKKVKRKIPMDGLVWGKASKLEPIAFGLKKLQISCVVEDDK 60

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           V  D L EE +  E   + VQS DIVAFNK+
Sbjct: 61  VGTDEL-EEAIAFE---DGVQSVDIVAFNKL 87

This family is the guanine nucleotide exchange domain of EF-1 beta and EF-1 delta chains. Length = 87

>gnl|CDD|214886 smart00888, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 89.1 bits (222), Expect = 2e-24
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)

Query: 43  KSSVLLDIKPWNDETDMQKLEEAVRSI-KMEGLHWGAS-KLVPVGYGIKKLQIMLTIVDD 100
           K  V+L + P +DE D+++LEE V+SI  M+GL WGA  +L P+ +G+K LQI + + DD
Sbjct: 1   KVLVVLKVMPESDEVDLEELEEKVKSILPMDGLLWGAGIELEPIAFGLKALQIYVVVEDD 60

Query: 101 LVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
               D L E   + E   E VQS ++ A +++
Sbjct: 61  EGGTDELEEA--IEE--VEGVQSVEVEAVSRL 88

Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta). This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). Length = 88

>gnl|CDD|225003 COG2092, EFB1, Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

 Score = 59.6 bits (145), Expect = 6e-13
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
               V+L + P + E D+++LEE ++    EG      +  P+ +G+K L++ + + D  
Sbjct: 2   ADVLVVLKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKE 61

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
              D L E     E     V+S ++   +++
Sbjct: 62  GGTDALEEALEEVEG----VESVEVENVSRL 88

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG1668	231	consensus Elongation factor 1 beta/delta chain [Tr	100.0
cd00292	88	EF1B Elongation factor 1 beta (EF1B) guanine nucle	100.0
PRK00435	88	ef1B elongation factor 1-beta; Validated	100.0
PF00736	89	EF1_GNE: EF-1 guanine nucleotide exchange domain;	100.0
TIGR00489	88	aEF-1_beta translation elongation factor aEF-1 bet	99.98
COG2092	88	EFB1 Translation elongation factor EF-1beta [Trans	99.96
PF10587	28	EF-1_beta_acid: Eukaryotic elongation factor 1 bet	97.96

>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]

Probab=100.00  E-value=1.2e-47  Score=307.64  Aligned_cols=128  Identities=65%  Similarity=0.944  Sum_probs=112.0

Q ss_pred             CCCCCCCCCcCCCCCCChhhH-HHHHH---HHHHHHhh-cc-ccccCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeE
Q 038216            2 AAADDDNDDVDLFGEETEEDK-KAAEE---RSAAIKAS-AK-RKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLH   75 (132)
Q Consensus         2 ~~~~~~ddD~Dlfg~d~ee~~-~~~~~---~~~~~~~~-~k-~k~~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~   75 (132)
                      ++..++|||+|||||++||++ ++++.   |.++|+.+ ++ +.+++||+|+|+|||||++|||.+|+.+||+|+|+||.
T Consensus        98 ~ae~dddDDiDLFGsd~EEEd~eA~~~~eErla~y~~kka~k~~~iakssvlLdvkpwddeTdm~~~e~~vrsi~~~gl~  177 (231)
T KOG1668|consen   98 AAEADDDDDVDLFGSDDEEEDEEAARIREERLAAYAAKKAKKPPPIAKSSVLLDVKPWDDETDMKELEECVRSIEMDGLV  177 (231)
T ss_pred             cccccccccccccCCccccchhHHHHHHhhhhhhhhHHhccCCcccccceEEeecCCcCCCCCHHHHHHHHHHhhhccce
Confidence            455778999999999877644 45544   44445443 22 34599999999999999999999999999999999999


Q ss_pred             EeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCceeeEeeeeecC
Q 038216           76 WGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI  132 (132)
Q Consensus        76 wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~VqSvdI~~fnki  132 (132)
                      ||+++++|||||||+|||+|+|+|++||+|.+++.   +..+|++||||||++||||
T Consensus       178 wgasklvpvGygikKlqi~~vveddkvs~D~l~e~---i~~~e~~Vqs~di~afnki  231 (231)
T KOG1668|consen  178 WGASKLVPVGYGIKKLQIQCVVEDDKVSIDDLIEE---ITKFEDHVQSVDIAAFNKI  231 (231)
T ss_pred             eccccccccccceeeEEEEEEEEcCccccchhHHH---hhhhhcceeeehhhhcccC
Confidence            99999999999999999999999999999999999   7788899999999999997

>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

Probab=100.00  E-value=9.4e-36  Score=208.89  Aligned_cols=88  Identities=48%  Similarity=0.783  Sum_probs=84.5

Q ss_pred             cCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCC
Q 038216           41 SGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY  120 (132)
Q Consensus        41 ~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~  120 (132)
                      .+||+++|+|||||++|||++|+++||+++++||+||+++++|||||||+||++|+|+|++||||+|+++   +... ++
T Consensus         1 mak~~vvl~V~P~~~e~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~lee~---i~~~-d~   76 (88)
T cd00292           1 MAKSLVVLKVKPWDDEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEA---ISEE-DG   76 (88)
T ss_pred             CceEEEEEEEecCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHHHHH---Hhcc-CC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999   6664 89


Q ss_pred             ceeeEeeeeecC
Q 038216          121 VQSCDIVAFNKI  132 (132)
Q Consensus       121 VqSvdI~~fnki  132 (132)
                      ||||||++||||
T Consensus        77 VqsveI~~~~ki   88 (88)
T cd00292          77 VQSVDVEAFNKL   88 (88)
T ss_pred             ceEEEEEEEEeC
Confidence            999999999997

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.

>PRK00435 ef1B elongation factor 1-beta; Validated

Probab=100.00  E-value=7e-35  Score=204.63  Aligned_cols=87  Identities=21%  Similarity=0.423  Sum_probs=84.4

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCc
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV  121 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~V  121 (132)
                      +|++++|+|||||++|||++|+++||+++++||.||+++++|||||||+||++|+|+|++||||+|+++   |++|++ |
T Consensus         2 ~~v~vv~~V~P~d~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td~lee~---i~~~e~-V   77 (88)
T PRK00435          2 GDVLAVLKVMPESPEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTEPVEEA---FANVEG-V   77 (88)
T ss_pred             ceEEEEEEECCCCCCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcHHHHHH---HhccCC-C
Confidence            689999999999999999999999999999999999999999999999999999999999999999999   888966 9


Q ss_pred             eeeEeeeeecC
Q 038216          122 QSCDIVAFNKI  132 (132)
Q Consensus       122 qSvdI~~fnki  132 (132)
                      ||++|++||+|
T Consensus        78 qsvei~~~~r~   88 (88)
T PRK00435         78 ESVEVEEVSRI   88 (88)
T ss_pred             cEEEEEEEecC
Confidence            99999999986

>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=100.00  E-value=4.6e-34  Score=200.53  Aligned_cols=87  Identities=51%  Similarity=0.842  Sum_probs=80.4

Q ss_pred             cceeEEEeeeCCCcccHHHHHHHH-HhhccCCeEEe-eeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCC
Q 038216           43 KSSVLLDIKPWNDETDMQKLEEAV-RSIKMEGLHWG-ASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY  120 (132)
Q Consensus        43 Ks~vvl~VkP~d~etDl~~L~~~V-r~i~~~Gl~wg-~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~  120 (132)
                      ||+++|+|||||++|||++|+++| |++.++|++|| .++++|||||||+||++|+|+|++||||+|++.   +..++++
T Consensus         1 ks~vv~~V~P~d~e~Dl~~l~~~Ik~~i~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~~~~d~lee~---i~~~~e~   77 (89)
T PF00736_consen    1 KSSVVLKVKPWDDETDLEKLEKKIKRKIPMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDEGSTDDLEEA---IESFEEG   77 (89)
T ss_dssp             EEEEEEEEEESSTTS-HHHHHHHHHHHS-TTTEEEEEEEEEEEECTTEEEEEEEEEECTTTCGHHHHHHH---HTTCTTT
T ss_pred             CceEEEEEeeCCCcccHHHHHHHHHHhchhcceeeeeeeeeeeecccEEEEEEEEEEEcCccChHHHHHH---HHhcCCC
Confidence            689999999999999999999999 77889999999 999999999999999999999999999999999   6566799


Q ss_pred             ceeeEeeeeecC
Q 038216          121 VQSCDIVAFNKI  132 (132)
Q Consensus       121 VqSvdI~~fnki  132 (132)
                      ||||+|++||||
T Consensus        78 Vqsvei~~~~rl   89 (89)
T PF00736_consen   78 VQSVEIESFNRL   89 (89)
T ss_dssp             EEEEEEEEEEE-
T ss_pred             ccEEEEEEEEcC
Confidence            999999999996

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.

>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta

Probab=99.98  E-value=2.8e-32  Score=191.45  Aligned_cols=87  Identities=17%  Similarity=0.318  Sum_probs=84.3

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCc
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV  121 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~V  121 (132)
                      +|++++|+|||||+++||++|+++||+++++|+.|++++.+||||||++|++.|+|+|++||||+++++   +++++ +|
T Consensus         2 ~~v~~~~kV~P~s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~---i~~ve-~V   77 (88)
T TIGR00489         2 GDVVAKIKVMPESPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEES---LSGIE-GV   77 (88)
T ss_pred             ceEEEEEEECCCCCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHH---HhcCC-Cc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999   88895 79


Q ss_pred             eeeEeeeeecC
Q 038216          122 QSCDIVAFNKI  132 (132)
Q Consensus       122 qSvdI~~fnki  132 (132)
                      ||++|++||+|
T Consensus        78 ~svev~~~~r~   88 (88)
T TIGR00489        78 ESVEVTDVRLL   88 (88)
T ss_pred             cEEEEEEEEcC
Confidence            99999999986

This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.

>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.3e-29  Score=176.32  Aligned_cols=87  Identities=25%  Similarity=0.413  Sum_probs=83.5

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCc
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV  121 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~V  121 (132)
                      ++++++|+|||||+++||++|+++||+++|+|++|+.+..+|||||||+|++.|+|+|.+||||++++.   ++.+ ++|
T Consensus         2 ~~Vlv~lkV~P~d~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~Eg~td~~ee~---l~~v-egV   77 (88)
T COG2092           2 ADVLVVLKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEA---LEEV-EGV   77 (88)
T ss_pred             cceEEEEEecCCCCCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEcccccCcHHHHHH---Hhhc-cCc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999   7788 469


Q ss_pred             eeeEeeeeecC
Q 038216          122 QSCDIVAFNKI  132 (132)
Q Consensus       122 qSvdI~~fnki  132 (132)
                      ||++++++++|
T Consensus        78 ~sveve~vsrl   88 (88)
T COG2092          78 ESVEVENVSRL   88 (88)
T ss_pred             ceEEEEEEEeC
Confidence            99999999986

>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=97.96  E-value=7.5e-06  Score=46.47  Aligned_cols=26  Identities=38%  Similarity=0.601  Sum_probs=19.1

Q ss_pred             CCCCCCh-hhHHHHHHHHHHHHhhccc
Q 038216           13 LFGEETE-EDKKAAEERSAAIKASAKR   38 (132)
Q Consensus        13 lfg~d~e-e~~~~~~~~~~~~~~~~k~   38 (132)
                      |||||+| |++++++.|++++++++.|
T Consensus         1 LFGSddEeed~ea~r~reeRla~y~aK   27 (28)
T PF10587_consen    1 LFGSDDEEEDEEAERIREERLAAYAAK   27 (28)
T ss_pred             CCCCccccccHHHHHHHHHHHHHHHcc
Confidence            8999887 6777777777776665443

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1b64_A	91	Solution Structure Of The Guanine Nucleotide Exchan		6e-27
1ije_B	90	Nucleotide Exchange Intermediates In The Eef1a-eef1		1e-18
1f60_B	94	Crystal Structure Of The Yeast Elongation Factor Co		1e-18
2b7b_B	94	Yeast Guanine Nucleotide Exchange Factor Eef1balpha		4e-18

>pdb|1B64|A Chain A, Solution Structure Of The Guanine Nucleotide Exchange Factor Domain From Human Elongation Factor-One Beta, Nmr, 20 Structures Length = 91

Iteration: 1
 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD 
Sbjct: 4   AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDK 63
Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           V  D ++EE + A    +YVQS D+ AFNKI
Sbjct: 64  VGTD-MLEEQITA--FEDYVQSMDVAAFNKI 91

>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-eef1ba Complex Length = 90

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KS V LD+KPW+DET+++++   V++I+MEGL WGA + +P+G+GIKKLQI   + DD 
Sbjct: 3   AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 62
Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           VS+D+L +     E   ++VQS DI A  K+
Sbjct: 63  VSLDDLQQS---IEEDEDHVQSTDIAAMQKL 90

>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 94

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KS V LD+KPW+DET+++++   V++I+MEGL WGA + +P+G+GIKKLQI   + DD 
Sbjct: 7   AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 66
Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           VS+D+L +     E   ++VQS DI A  K+
Sbjct: 67  VSLDDLQQS---IEEDEDHVQSTDIAAMQKL 94

>pdb|2B7B|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a And Gdp Length = 94

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KS V LD+KPW+DET+++++   V++I+MEGL WGA + +P+G+GIKKLQI   + DD 
Sbjct: 7   AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 66
Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           VS+D+L +     E   ++VQS DI A   +
Sbjct: 67  VSLDDLQQS---IEEDEDHVQSTDIAAMQAL 94
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	3e-41
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	4e-39
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	4e-21
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	8e-14

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B* Length = 94

 Score =  131 bits (331), Expect = 3e-41
 Identities = 44/96 (45%), Positives = 66/96 (68%), Gaps = 3/96 (3%)

Query: 37  KRKESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLT 96
             K + KS V LD+KPW+DET+++++   V++I+MEGL WGA + +P+G+GIKKLQI   
Sbjct: 2   PAKPAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCV 61

Query: 97  IVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           + DD VS+D+L +     E   ++VQS DI A  K+
Sbjct: 62  VEDDKVSLDDLQQS---IEEDEDHVQSTDIAAMQKL 94

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1 Length = 91

 Score =  125 bits (316), Expect = 4e-39
 Identities = 57/91 (62%), Positives = 67/91 (73%), Gaps = 3/91 (3%)

Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD 
Sbjct: 4   AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDK 63

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           V  D L E+        +YVQS D+ AFNKI
Sbjct: 64  VGTDMLEEQI---TAFEDYVQSMDVAAFNKI 91

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1 Length = 89

 Score = 80.1 bits (198), Expect = 4e-21
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
           G     + + P + + D++ L++ ++    EG         P+ +G+  L +M+ + D  
Sbjct: 2   GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE 61

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
              +   EE L      E V + ++    ++
Sbjct: 62  GGTEAA-EESLSG---IEGVSNIEVTDVRRL 88

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii} Length = 91

 Score = 61.7 bits (150), Expect = 8e-14
 Identities = 14/87 (16%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 46  VLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVD 105
            ++ + P + + ++ +LEE ++ +  E       +  P+ +G+  L+  +   D+     
Sbjct: 8   GVIRVMPTDPDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSF 67

Query: 106 NLIEEHLMAEPINEYVQSCDIVAFNKI 132
           + + E        E V+S ++   ++I
Sbjct: 68  DEVAEKFEEV---ENVESAEVETVSRI 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	100.0
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	100.0
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	100.0
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	100.0

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*

Probab=100.00  E-value=3.1e-41  Score=238.31  Aligned_cols=91  Identities=48%  Similarity=0.838  Sum_probs=88.3

Q ss_pred             cccCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccC
Q 038216           39 KESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPIN  118 (132)
Q Consensus        39 k~~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~e  118 (132)
                      |+++||+++|+|||||++|||++|+++||+++|+||.||+++++||||||++||++|+|+|++||||+|+++   |+.||
T Consensus         4 k~~~ks~v~l~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd~~~tD~lee~---i~~~e   80 (94)
T 1f60_B            4 KPAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDE   80 (94)
T ss_dssp             -CCCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHH---HHTCT
T ss_pred             CceeeEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECCccChHHHHHH---HHhcc
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999   78898


Q ss_pred             CCceeeEeeeeecC
Q 038216          119 EYVQSCDIVAFNKI  132 (132)
Q Consensus       119 d~VqSvdI~~fnki  132 (132)
                      ++||||||++||||
T Consensus        81 d~VqSvdI~~~~ki   94 (94)
T 1f60_B           81 DHVQSTDIAAMQKL   94 (94)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CceeEEEEEEEEcC
Confidence            99999999999997

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1

Probab=100.00  E-value=1.5e-40  Score=233.60  Aligned_cols=90  Identities=63%  Similarity=0.983  Sum_probs=87.9

Q ss_pred             ccCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCC
Q 038216           40 ESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINE  119 (132)
Q Consensus        40 ~~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed  119 (132)
                      +++||+++|+|||||++|||++|+++||+++++||.||+++++|||||||+||++|+|+|++||||+|+++   |++||+
T Consensus         2 ~~~ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd~v~tD~lee~---i~~~ed   78 (91)
T 1b64_A            2 LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ---ITAFED   78 (91)
T ss_dssp             CSSCEEEEEEEEESSTTSCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHH---HTTCTT
T ss_pred             ccceEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECCccChHHHHHH---HHhccC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999   889989


Q ss_pred             CceeeEeeeeecC
Q 038216          120 YVQSCDIVAFNKI  132 (132)
Q Consensus       120 ~VqSvdI~~fnki  132 (132)
                      +||||||++||||
T Consensus        79 ~VqSvdI~~~~ki   91 (91)
T 1b64_A           79 YVQSMDVAAFNKI   91 (91)
T ss_dssp             TEEEEEESCCBCC
T ss_pred             ceeEEEEEEEEcC
Confidence            9999999999997

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1

Probab=100.00  E-value=4.9e-38  Score=219.98  Aligned_cols=87  Identities=16%  Similarity=0.322  Sum_probs=84.7

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCc
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV  121 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~V  121 (132)
                      +||+++|+|||||++|||++|+++||+++++||.||+++++|||||||+||++|+|+|++||||+|+++   +++|++ |
T Consensus         2 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~---i~~~e~-V   77 (89)
T 1gh8_A            2 GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEES---LSGIEG-V   77 (89)
T ss_dssp             CCEEEEEEEEESSSCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHH---HTTSCS-S
T ss_pred             ceEEEEEEEccCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHH---HhccCC-c
Confidence            689999999999999999999999999999999999999999999999999999999999999999999   888965 9


Q ss_pred             eeeEeeeeecC
Q 038216          122 QSCDIVAFNKI  132 (132)
Q Consensus       122 qSvdI~~fnki  132 (132)
                      |||||++||||
T Consensus        78 qsvdv~~~~ri   88 (89)
T 1gh8_A           78 SNIEVTDVRRL   88 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cEEEEEEEEec
Confidence            99999999997

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-37  Score=216.82  Aligned_cols=87  Identities=18%  Similarity=0.321  Sum_probs=84.8

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCC-ChhHHHHhhhcccccCCC
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV-SVDNLIEEHLMAEPINEY  120 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v-~~D~lee~~~~i~~~ed~  120 (132)
                      +||+++|+|||||++|||++|+++||+++++||.||+++++|||||||+||++|+|+|++| |||+|+++   |++|| +
T Consensus         4 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~---i~~~e-~   79 (91)
T 2yy3_A            4 FNLVGVIRVMPTDPDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEK---FEEVE-N   79 (91)
T ss_dssp             CCEEEEEEEEESSTTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHH---HHHST-T
T ss_pred             ceEEEEEEECCCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHH---HhcCC-C
Confidence            7999999999999999999999999999999999999999999999999999999999999 99999999   78896 7


Q ss_pred             ceeeEeeeeecC
Q 038216          121 VQSCDIVAFNKI  132 (132)
Q Consensus       121 VqSvdI~~fnki  132 (132)
                      ||||+|++||+|
T Consensus        80 VqSvdV~~~~ri   91 (91)
T 2yy3_A           80 VESAEVETVSRI   91 (91)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             ceEEEEEEEEcC
Confidence            999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1f60b_	90	d.58.12.1 (B:) Guanine nucleotide exchange factor	1e-38
d1b64a_	91	d.58.12.1 (A:) Guanine nucleotide exchange factor	1e-36
d1gh8a_	89	d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacteriu	6e-30

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (311), Expect = 1e-38
 Identities = 43/90 (47%), Positives = 64/90 (71%), Gaps = 3/90 (3%)

Query: 43  KSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLV 102
           KS V LD+KPW+DET+++++   V++I+MEGL WGA + +P+G+GIKKLQI   + DD V
Sbjct: 4   KSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKV 63

Query: 103 SVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           S+D+L +     E   ++VQS DI A  K+
Sbjct: 64  SLDDLQQS---IEEDEDHVQSTDIAAMQKL 90

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 1e-36
 Identities = 57/91 (62%), Positives = 67/91 (73%), Gaps = 3/91 (3%)

Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
            KSS+LLD+KPW+DETDM KLEE VRSI+ +GL WG+SKLVPVGYGIKKLQI   + DD 
Sbjct: 4   AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDK 63

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
           V  D L E+        +YVQS D+ AFNKI
Sbjct: 64  VGTDMLEEQ---ITAFEDYVQSMDVAAFNKI 91

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  101 bits (254), Expect = 6e-30
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 42  GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDL 101
           G     + + P + + D++ L++ ++    EG         P+ +G+  L +M+ + D  
Sbjct: 2   GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE 61

Query: 102 VSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 132
              +   EE L      E V + ++    ++
Sbjct: 62  GGTEAA-EESLSGI---EGVSNIEVTDVRRL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1f60b_	90	Guanine nucleotide exchange factor (GEF) domain fr	100.0
d1b64a_	91	Guanine nucleotide exchange factor (GEF) domain fr	100.0
d1gh8a_	89	aEF-1beta {Archaeon Methanobacterium thermoautotro	100.0

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-40  Score=229.66  Aligned_cols=90  Identities=48%  Similarity=0.836  Sum_probs=88.0

Q ss_pred             ccCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCC
Q 038216           40 ESGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINE  119 (132)
Q Consensus        40 ~~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed  119 (132)
                      |+|||+++|+|||||++|||++|+++||+++++||.||+++++|||||||+||++|+|+|++||+|+++++   ++++|+
T Consensus         1 p~aKs~vvl~VkP~d~e~Dl~~l~~~ik~i~~~gl~~g~~~~~PiafGlkkL~i~~vveDd~~~~D~lee~---i~~~Ed   77 (90)
T d1f60b_           1 PAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDED   77 (90)
T ss_dssp             CCCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHH---HHTCTT
T ss_pred             CcceEEEEEEEeeCCCCCCHHHHHHHHHHhCcCccEEeEEEEEEEeeeeeeEEEEEEEEeCCcCHHHHHHH---HHhhcC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999   788989


Q ss_pred             CceeeEeeeeecC
Q 038216          120 YVQSCDIVAFNKI  132 (132)
Q Consensus       120 ~VqSvdI~~fnki  132 (132)
                      +||||||++||||
T Consensus        78 ~VqSvdI~~~~ki   90 (90)
T d1f60b_          78 HVQSTDIAAMQKL   90 (90)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             ceeEEEEEEEecC
Confidence            9999999999997

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=226.43  Aligned_cols=89  Identities=64%  Similarity=1.004  Sum_probs=87.2

Q ss_pred             cCcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCC
Q 038216           41 SGKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEY  120 (132)
Q Consensus        41 ~~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~  120 (132)
                      +|||+++|+|||||++|||++|+++||+++++|+.||.++++|||||||+||++|+|+|++||||+++++   +..+|++
T Consensus         3 vaKs~vvl~VkP~d~e~Dl~~l~~~vk~i~~~gl~wg~~k~~PIaFGlkkL~i~~vveDd~~~~D~lee~---i~~~Ed~   79 (91)
T d1b64a_           3 VAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ---ITAFEDY   79 (91)
T ss_dssp             SSCEEEEEEEEESSTTSCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHH---HTTCTTT
T ss_pred             EEEEEEEEEEeeCCCCCCHHHHHHHHHHhccccCcEeeEEEEEEEeeeeeEEEEEEEEeCCcChHHHHHH---HHhhcCc
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999   7889899


Q ss_pred             ceeeEeeeeecC
Q 038216          121 VQSCDIVAFNKI  132 (132)
Q Consensus       121 VqSvdI~~fnki  132 (132)
                      ||||||++||||
T Consensus        80 VqsvdI~s~nki   91 (91)
T d1b64a_          80 VQSMDVAAFNKI   91 (91)
T ss_dssp             EEEEEESCCBCC
T ss_pred             eeEEEEEEeecC
Confidence            999999999997

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=2.1e-35  Score=204.76  Aligned_cols=87  Identities=17%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             CcceeEEEeeeCCCcccHHHHHHHHHhhccCCeEEeeeEEeeeeeeeeeEEEEEEEeCCCCChhHHHHhhhcccccCCCc
Q 038216           42 GKSSVLLDIKPWNDETDMQKLEEAVRSIKMEGLHWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV  121 (132)
Q Consensus        42 ~Ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkLqi~~vVeDd~v~~D~lee~~~~i~~~ed~V  121 (132)
                      +|++++|+|||||++|||++|+++||+++++|+.||+++++|||||||+||++|+|+|++|+||++++.   ++++ ++|
T Consensus         2 ~~v~v~~kV~P~~~e~dl~~l~~~ik~~~~~g~~~~~~~~~PiaFGLk~L~v~~vv~D~~g~~D~lee~---i~~i-e~V   77 (89)
T d1gh8a_           2 GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEES---LSGI-EGV   77 (89)
T ss_dssp             CCEEEEEEEEESSSCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHH---HTTS-CSS
T ss_pred             ceEEEEEEECCCCCCCCHHHHHHHHHhhccCCcEEEEEEEEEEEcceEeEEEEEEEEcCCcChHHHHHH---Hhcc-CCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999   7788 579


Q ss_pred             eeeEeeeeecC
Q 038216          122 QSCDIVAFNKI  132 (132)
Q Consensus       122 qSvdI~~fnki  132 (132)
                      |||||++||||
T Consensus        78 qsvev~~~~rl   88 (89)
T d1gh8a_          78 SNIEVTDVRRL   88 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cEEEeEEeecc
Confidence            99999999997