Citrus Sinensis ID: 038230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKSLA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHccccEEEccccccccccHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHccccccccEEEcccccHHHHHHccccccccccHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHcccccEEEEcccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEcEEEEEccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHccccEccccccEccEEEEEEEccccEEccccEEccHHHHHcHHHHHHHHHHccccEcccccEcHHHHHccccccccccccccccccccccEEEEEEEccccccHHHHHccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHcHcccccccEEEEEcccHHHHHHHHHccccEEEEccccccccHHHHHHHHcccEEEEEccccccccHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnifnlllptrrgvgavmkgcratcysffhsspettveVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVnitrhgclyetepayvtdqprflnsavrgvtklgphELLGVLKKIEKDmgrtngirhgprpidldilfygrfsihsdtltvpheriwerpfvVAPLLDLlgssvesdtklggesligkegmkrvLPIGNLLWDWSLKTSVMGIlnltpdsfsdggkfqSVEAAVSQVRLMISEgadmidigaqstrpmatKISAEKELERLIPVLEAVltmpemegklvsVDTFYSKVASEAvgkgahivndvsagqldpdmYKVVAGLKVPYVamhmrgdpstmqneenlqydDVCKQVASELYSKVRDaelsgipawriiidpglgfskkaEHNLDILLGLaashapiligpsrkRFLGeicnrpsaderdpatIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKSLA
Flexible Loop (DISEMBL)
mnifnlllptrrgVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMgrtngirhgprpIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGssvesdtklggesligkegmkrVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRpsaderdpATIASITAGVLGGANIVRVHNIrdnldavklcdsmltrrksla
Low Complexity Region (SEG)
MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPettvevqsqeqevvIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKSLA
Disordered region (IsUnstruct)
**IFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEV***EQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG***************ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM************LQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNR********ATIASITAGVLGGANIVRVHNIRDNLDAVKLCDS*********
Disordered Region (DISOPRED)
*********************************************VVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKL*********GMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR****
Disordered Region (DISEMBL)
MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSS*********QEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKSLA
Disordered Region (DISPRO)
*NIFNLLLPTRRGVGAVMKGCRATCYSFFHSS**TT**VQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKSLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
P29251	740	Folic acid synthesis prot	N/A	no	0.918	0.595	0.409	1e-87
Q4LB35	733	Folic acid synthesis prot	yes	no	0.862	0.564	0.383	2e-71
P53848	824	Folic acid synthesis prot	yes	no	0.918	0.535	0.307	9e-60
P73248	289	Dihydropteroate synthase	N/A	no	0.556	0.923	0.419	5e-57
Q54YD9	657	Folic acid synthesis prot	yes	no	0.614	0.449	0.359	3e-56
P0AC15	282	Dihydropteroate synthase	yes	no	0.537	0.914	0.396	5e-48
P0AC13	282	Dihydropteroate synthase	N/A	no	0.537	0.914	0.396	5e-48
P0AC14	282	Dihydropteroate synthase	yes	no	0.537	0.914	0.396	5e-48
P28822	285	Dihydropteroate synthase	yes	no	0.533	0.898	0.400	1e-46
O05701	267	Dihydropteroate synthase	yes	no	0.516	0.928	0.396	2e-45

>sp|P29251|FOL1_PNECA Folic acid synthesis protein fol1 OS=Pneumocystis carinii GN=fol1 PE=1 SV=1

 Score =  323 bits (829), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/464 (40%), Positives = 270/464 (58%), Gaps = 23/464 (4%)

Query: 27  SFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEP 86
           S F S+     E     + V I++GSN+G+R+    +A++ M   G+ + +   LYE++P
Sbjct: 277 SCFSSNNYIKSENSIDNEAVYISLGSNLGNRIKFILDAIEKMSIKGIKVLKTSMLYESKP 336

Query: 87  AYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFS 146
            Y  DQP F N+  +  T L P +LL  L+ IEK++GR   I  GPR IDLDI+FYGR  
Sbjct: 337 MYFKDQPAFYNAVCKVQTSLHPEQLLFELQLIEKELGRVKVIDKGPRCIDLDIVFYGRKI 396

Query: 147 IHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGK---EGMKRVLPI--G 201
           I+S++L +PH R+ ER FV+ PLLD+ G  V   T L   S   K     +K VLP    
Sbjct: 397 INSESLIIPHPRVLERSFVLKPLLDISGDLVHPVTGLSIASYFEKIVDHDIKPVLPFLYK 456

Query: 202 NLLWDWSLK-----TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQ 256
           N   D+S +     T +M ILNLTPDSF DGG   S ++ +  V   I+ GA +IDIG Q
Sbjct: 457 NKSIDFSFRSYKAPTYIMAILNLTPDSFFDGG-IHSYDSVLIDVEKFINAGATIIDIGGQ 515

Query: 257 STRPMATKISAEKELERLIPVLEAVL-TMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND 315
           STRP +  I  E+E+ R+IP ++ +  T P++   L+S+DTF S+VA +AV  GA +VND
Sbjct: 516 STRPGSYIIPLEEEIFRVIPAIKYLQKTYPDI---LISIDTFRSEVAEQAVKAGASLVND 572

Query: 316 VSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAE 375
           +S G+ DP M+  VA LKVP   MHMRG+   M N  +    D+ +Q+  EL   +  AE
Sbjct: 573 ISGGRYDPKMFNTVARLKVPICIMHMRGNFLNMDNLTDYG-TDIIEQITIELEKLLNSAE 631

Query: 376 LSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA-------PILIGPSRKRFLGEICN 428
            SGIP W II+DPGLGFSK    N+++L       +       P L+GPSRKRF G I  
Sbjct: 632 KSGIPRWNIILDPGLGFSKTLHQNIELLRRFNELKSKNCFNGLPWLLGPSRKRFTGFITG 691

Query: 429 RPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
                +R   T+A++ A + GG +I+RVH++ +     K+ D++
Sbjct: 692 DNMPKDRIWGTVAAVVASISGGCDIIRVHDVYEMYKISKMSDAI 735

Catalyzes three sequential steps of tetrahydrofolate biosynthesis.
Pneumocystis carinii (taxid: 4754)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q4LB35|FOL1_SCHPO Folic acid synthesis protein fol1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fol1 PE=1 SV=2

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/441 (38%), Positives = 247/441 (56%), Gaps = 27/441 (6%)

Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           ++ GSN+GD+      AL ++ K+ G+ +     LYETEP Y  DQP FLN   +  T++
Sbjct: 300 LSFGSNIGDKFEQIQTALSMLHKIEGIRVLDVSPLYETEPMYYKDQPSFLNGVCKIETRM 359

Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
            P  LL   + IE++MGR   I  GPR IDLDI+ Y      S+ LT+PH  + ER FV+
Sbjct: 360 SPINLLRACQSIEQEMGRIKTILKGPRCIDLDIVLYEDCVYESEVLTIPHLGLQEREFVL 419

Query: 167 APLLDLLGSSVESDTKLGGESLIGK---EGMKRVLPIGN-LLWDWSLKTSVMGILNLTPD 222
            PLL L    V   T    +  + K   +G++      N  + + +L    MGILN+TPD
Sbjct: 420 RPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKKIINGAL---TMGILNVTPD 476

Query: 223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV- 281
           SFSDGGK  S    + + + M+ +GA ++DIG QST+P A  +S E+EL R+IP++  + 
Sbjct: 477 SFSDGGKV-SQNNILEKAKSMVGDGASILDIGGQSTKPGADPVSVEEELRRVIPMISLLR 535

Query: 282 ---LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338
              +T+P      +S+DT+YSKVA  A+  GA+I+NDV+ G  D  M  + A L+VP   
Sbjct: 536 SSGITVP------ISIDTYYSKVAKLAIEAGANIINDVTGGMGDEKMLPLAASLQVPICI 589

Query: 339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEH 398
           MHMRG P TM+   ++   D+ ++VA EL S+V  A  SG+  + II+DPG GF+K  + 
Sbjct: 590 MHMRGTPETMK-ALSIYEKDIVEEVAVELSSRVEAAVQSGVHRYNIILDPGFGFAKTPKQ 648

Query: 399 NLDILLGL-------AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGA 451
           +  +L  L              L GPSRK F G      S  +R   T A +TA VL G 
Sbjct: 649 SAGLLGRLHELMKKPQFKDMHWLSGPSRKGFTGYFTGDASPKDRIWGTSACVTASVLQGV 708

Query: 452 NIVRVHNIRDNLDAVKLCDSM 472
           +IVRVH+ ++    V + +++
Sbjct: 709 SIVRVHDTKEMSKVVGMANAI 729

Catalyzes three sequential steps of tetrahydrofolate biosynthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P53848|FOL1_YEAST Folic acid synthesis protein FOL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FOL1 PE=1 SV=2

 Score =  231 bits (589), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 271/536 (50%), Gaps = 95/536 (17%)

Query: 31  SSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLM-KKLGVNITRHGCLYETEPAYV 89
           SS  T +E ++  +   +A GSN+GDR  +   ALQL+ ++  V +     ++E+EP Y 
Sbjct: 285 SSQNTPIEGKNTWKRAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYF 344

Query: 90  TDQPRFLNSAVRGVTKLGPHELLGVLKKIE-KDMGRTNGIRHGPRPIDLDILFYGRFS-- 146
            DQ  F+N  V   T L P ELL + KKIE +++ R     +GPR IDLDI+ +   +  
Sbjct: 345 KDQTPFMNGCVEVETLLTPSELLKLCKKIEYEELQRVKHFDNGPRTIDLDIVMFLNSAGE 404

Query: 147 ---IHSDTLTVPHERIWERPFVVAPLLDLLG---------------------SSVESDTK 182
              ++   L +PH R+ ER FV+ PL +L+                         + DT 
Sbjct: 405 DIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHLHPVTAEPIVDHLKQLYDKQHDEDTL 464

Query: 183 LGGESLIGKEGMK-RVLPI--GNLLWDWSLKTS--------VMGILNLTPDSFSDGGK-F 230
                L  + G++ R L       L +++ +T+        +M I N TPDSFSDGG+ F
Sbjct: 465 WKLVPLPYRSGVEPRFLKFKTATKLDEFTGETNRITVSPTYIMAIFNATPDSFSDGGEHF 524

Query: 231 QSVEAAVSQV------RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284
             +E+ ++ +       L + E   +ID+G  STRP + + S E+E+ R IP+++A+   
Sbjct: 525 ADIESQLNDIIKLCKDALYLHESV-IIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRES 583

Query: 285 PEM--EGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHM 341
            E+  +  ++S+DT+ S VA EA+  G  I+ND+S G  D +M+ V+A   ++ Y+  H 
Sbjct: 584 TELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHT 643

Query: 342 RGDPSTM--------------------QNEENLQYDDV------CKQVASELYSKVRDAE 375
           RGD STM                     N +  Q DD+       + V  E+  +   A 
Sbjct: 644 RGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAI 703

Query: 376 LSGIPAWRIIIDPGLGFSKKAEHNLDIL-------------------LGLAASHAPILIG 416
            +G+  W+I+IDPGLGF+K  + NL I+                   + +   + P+L+G
Sbjct: 704 DNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNMPVLLG 763

Query: 417 PSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
           PSRK+F+G I     A +RD AT A + + +  G+++VRVH++++   ++KL D++
Sbjct: 764 PSRKKFIGHITKDVDAKQRDFATGAVVASCIGFGSDMVRVHDVKNCSKSIKLADAI 819

Catalyzes three sequential steps of tetrahydrofolate biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P73248|DHPS_SYNY3 Dihydropteroate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=folP PE=3 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 176/281 (62%), Gaps = 14/281 (4%)

Query: 198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS 257
           LP+G  L+DW  +T VMGILN TPDSFSDGG+F S+  A+ Q + M+  GA +IDIG QS
Sbjct: 15  LPVGQTLFDWGKRTYVMGILNTTPDSFSDGGEFNSLPTAIHQAKTMVQGGAHIIDIGGQS 74

Query: 258 TRPMATKISAEKELERLIPVLEAV---LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN 314
           TRP A  +S ++ELER IP+++A+   L +P      +S+DT  ++VA +A+  GA +VN
Sbjct: 75  TRPGAETVSLKEELERTIPIIQALRQELDIP------ISIDTTRAEVARQALQAGADMVN 128

Query: 315 DVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDA 374
           D+S    +P++  V A  K P + MH+RG+P TMQN  +  Y D+  ++     ++V  A
Sbjct: 129 DISGATFEPEILAVAAQHKAPIILMHIRGNPQTMQNLTD--YGDLIGEMRQFFSAQVDLA 186

Query: 375 ELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPS 431
              G+   +II+DPG+GF+K AE N+ +L  L        P+L+GPSRK F+G+I ++P 
Sbjct: 187 RHYGVLPEQIILDPGIGFAKTAEQNITLLRQLPELKRLGFPLLVGPSRKSFIGKILDQPD 246

Query: 432 ADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
             ER   T A+    + GGA+IVRVH++       K+ D++
Sbjct: 247 PKERVWGTGATCCRAIAGGADIVRVHDVEAMAQICKVADAL 287

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q54YD9|FOL1_DICDI Folic acid synthesis protein FOL1 OS=Dictyostelium discoideum GN=fol1 PE=3 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 185/334 (55%), Gaps = 39/334 (11%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTK 105
           V +A GSN+GD+  N   + + ++K    I     +YE+ P Y  +Q  F N A +  T 
Sbjct: 148 VYLAFGSNLGDKFQNILNSFKRLEKQCF-IQSTSFMYESSPQYYREQDSFYNCACKVSTD 206

Query: 106 LGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
           L PH+LL  +K+IE DMGR    R+GPR ID+DI++Y    I +D L +PH  +WER FV
Sbjct: 207 LKPHDLLKFIKQIENDMGRVETFRNGPRVIDIDIIYYNGLIIKTDDLEIPHPLMWERDFV 266

Query: 166 VAPLLDLL---------------------GSSVESDTKLGGESLIGKEGMKRVLPIGNLL 204
           + PL D+                      G ++ +       +      +++V+ IGNL 
Sbjct: 267 LLPLSDIAPNFIHPTLHITTNRMKLNLPNGGNIHNIPPPPTATTTCNNIIEKVIRIGNLN 326

Query: 205 WDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK 264
           ++W+ KT +MGILN+TPDSF DGGKF ++E ++ Q   +I +GAD+IDIG QST P A +
Sbjct: 327 YNWNDKTFIMGILNVTPDSFVDGGKFNTLEKSIQQATALIEQGADIIDIGGQSTYPGAQQ 386

Query: 265 ISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAVGKGAHIVNDVSAGQLD 322
           IS E+E+ R++P ++ +    E+ G  +  S+DT + +VA EA+  G +I+NDVS     
Sbjct: 387 ISIEEEINRVVPTIKKIR---EVLGNDIPLSIDTLHHQVAKEAILAGCNIINDVS----- 438

Query: 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY 356
                     +VP +  H +     +Q ++N QY
Sbjct: 439 -------GEFRVPIILNHSQPTTQYLQQKQNEQY 465

Catalyzes three sequential steps of tetrahydrofolate biosynthesis.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0AC15|DHPS_SHIFL Dihydropteroate synthase OS=Shigella flexneri GN=folP PE=3 SV=1

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 167/270 (61%), Gaps = 12/270 (4%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17  VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQ 76

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+ND+ +   +P   +  A  
Sbjct: 77  RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAET 132

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            +P   MHM+G+P TMQ  E  +YDDV  +V      ++   E +GI   ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190

Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN-RPSADERDPATIASITAGVL 448
            K   HN  +L  LA  H    P+L+G SRK  +G++ N  PS  ER   ++A      +
Sbjct: 191 GKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPS--ERLSGSLACAVIAAM 248

Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
            GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 249 QGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Shigella flexneri (taxid: 623)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0AC13|DHPS_ECOLI Dihydropteroate synthase OS=Escherichia coli (strain K12) GN=folP PE=1 SV=1

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 167/270 (61%), Gaps = 12/270 (4%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17  VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQ 76

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+ND+ +   +P   +  A  
Sbjct: 77  RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAET 132

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            +P   MHM+G+P TMQ  E  +YDDV  +V      ++   E +GI   ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190

Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN-RPSADERDPATIASITAGVL 448
            K   HN  +L  LA  H    P+L+G SRK  +G++ N  PS  ER   ++A      +
Sbjct: 191 GKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPS--ERLSGSLACAVIAAM 248

Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
            GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 249 QGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0AC14|DHPS_ECOL6 Dihydropteroate synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=folP PE=3 SV=1

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 167/270 (61%), Gaps = 12/270 (4%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17  VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQ 76

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+ND+ +   +P   +  A  
Sbjct: 77  RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAET 132

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            +P   MHM+G+P TMQ  E  +YDDV  +V      ++   E +GI   ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190

Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN-RPSADERDPATIASITAGVL 448
            K   HN  +L  LA  H    P+L+G SRK  +G++ N  PS  ER   ++A      +
Sbjct: 191 GKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPS--ERLSGSLACAVIAAM 248

Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
            GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 249 QGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P28822|DHPS_BACSU Dihydropteroate synthase OS=Bacillus subtilis (strain 168) GN=sul PE=3 SV=2

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/272 (40%), Positives = 162/272 (59%), Gaps = 16/272 (5%)

Query: 207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKIS 266
           +  KT VMGILN+TPDSFSDGGK+ S++ A+   + MI +GA +IDIG +STRP A  +S
Sbjct: 21  YKEKTLVMGILNVTPDSFSDGGKYDSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVS 80

Query: 267 AEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMY 326
            ++E+ R+IPV+E +    E+ G  +SVDT+ + VA EAV  GA I+ND+   + DP M 
Sbjct: 81  EDEEMSRVIPVIERITK--EL-GVPISVDTYKASVADEAVKAGASIINDIWGAKHDPKMA 137

Query: 327 KVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386
            V A   VP V MH         N     Y+D+   + S+L   V+ A  +G+    II+
Sbjct: 138 SVAAEHNVPIVLMH---------NRPERNYNDLLPDMLSDLMESVKIAVEAGVDEKNIIL 188

Query: 387 DPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIASI 443
           DPG+GF+K    NL ++  L   +    P+L+  SRKRF+G + + P  +ER   T A++
Sbjct: 189 DPGIGFAKTYHDNLAVMNKLEIFSGLGYPVLLATSRKRFIGRVLDLPP-EERAEGTGATV 247

Query: 444 TAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
             G+  G +IVRVH+++      K+ D+ML +
Sbjct: 248 CLGIQKGCDIVRVHDVKQIARMAKMMDAMLNK 279

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O05701|DHPS_STAAU Dihydropteroate synthase OS=Staphylococcus aureus GN=folP PE=1 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 156/265 (58%), Gaps = 17/265 (6%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT +MGILN+TPDSFSDGGKF +VE+AV++V+ M+ EGAD+ID+G  STRP    I+ E+
Sbjct: 3   KTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE 62

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           EL R++PV+EA++         +SVDTF S+VA   +  G  I+ND  AG  D  M++VV
Sbjct: 63  ELNRVLPVVEAIVGFDVK----ISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVV 118

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      V MH         N    + + V +++ + L ++   A+++GIP+ +I +DPG
Sbjct: 119 AKYDAEIVLMH---------NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 169

Query: 390 LGFSKKAEHNLDILL---GLAASHAPILIGPSRKRFLGEICNRPSAD-ERDPATIASITA 445
           +GF+K      +++     L A+  P+L+  SRKRF  E+    +   ERD  T A+   
Sbjct: 170 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 229

Query: 446 GVLGGANIVRVHNIRDNLDAVKLCD 470
           G++ G   VRVHN+  N    K  D
Sbjct: 230 GIMKGVRAVRVHNVELNAKLAKGID 254

DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide.

Staphylococcus aureus (taxid: 1280)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
297738107	482	unnamed protein product [Vitis vinifera]	0.979	0.975	0.762	0.0
225423430	509	PREDICTED: folic acid synthesis protein	0.954	0.899	0.762	0.0
224099000	480	predicted protein [Populus trichocarpa]	0.933	0.933	0.780	0.0
238684536	512	dihydropterin pyrophosphokinase-dihydrop	0.993	0.931	0.688	0.0
356499917	523	PREDICTED: folic acid synthesis protein	0.995	0.913	0.687	0.0
449467235	506	PREDICTED: folic acid synthesis protein	0.987	0.936	0.698	0.0
449524504	506	PREDICTED: folic acid synthesis protein	0.987	0.936	0.696	0.0
356498014	581	PREDICTED: LOW QUALITY PROTEIN: folic ac	0.993	0.820	0.687	0.0
1934972	515	dihydropterin pyrophosphokinase /dihydro	0.943	0.879	0.714	0.0
357487651	515	Dihydropteroate synthase [Medicago trunc	0.983	0.916	0.677	0.0

>gi|297738107|emb|CBI27308.3| unnamed protein product [Vitis vinifera]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/492 (76%), Positives = 429/492 (87%), Gaps = 22/492 (4%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCN 60
           MNIF  L  TR G    MK CRATC S  HSS  T+VEV SQ+QEVVIA+GSNVG+R+ N
Sbjct: 1   MNIFKQLASTRCGFNGGMKSCRATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDN 60

Query: 61  FNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK 120
           FNEALQLMKK G++ITRHGCLYETEP YVTDQP FLNSAVRG+TKLGPHELL VLKKIEK
Sbjct: 61  FNEALQLMKKSGMHITRHGCLYETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEK 120

Query: 121 DMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180
           DMGRT+GIR+GPRPIDLDILFYG+F ++S+ LT+PHERIWERPFV+APL+D++GS++ESD
Sbjct: 121 DMGRTDGIRYGPRPIDLDILFYGKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESD 180

Query: 181 TKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQV 240
           T           G+KRVLP GN+LWDWSLKTS+MGILNLTPDSFSDGGKFQSVEAAVSQV
Sbjct: 181 TN----------GLKRVLPTGNVLWDWSLKTSMMGILNLTPDSFSDGGKFQSVEAAVSQV 230

Query: 241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300
           RLMI EGAD+IDIGAQSTRPMA+++SA++EL+RLIPVL+AVL MPE+EGKL+SVDTF+S+
Sbjct: 231 RLMILEGADIIDIGAQSTRPMASRLSAQEELDRLIPVLDAVLKMPEVEGKLLSVDTFHSE 290

Query: 301 VASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVC 360
           VASEA+GKGAHIVNDVSAGQLDP+M  VVA LKVPYVAMHMRG+PSTMQN ENLQYD+VC
Sbjct: 291 VASEAIGKGAHIVNDVSAGQLDPNMLDVVASLKVPYVAMHMRGNPSTMQNSENLQYDNVC 350

Query: 361 KQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG------------LAA 408
           +QVASELY +VRDAELSGIPAWRIIIDPG+GFSK  EHNLDIL+G            LA 
Sbjct: 351 EQVASELYLRVRDAELSGIPAWRIIIDPGIGFSKNTEHNLDILMGLPNIRMELAGKSLAL 410

Query: 409 SHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKL 468
           SHAP+LIGPSRKRFLG+IC RP+A ERDPATIA++TAGVLGGANIVR HN++DNLDAVKL
Sbjct: 411 SHAPMLIGPSRKRFLGDICARPAAAERDPATIAAVTAGVLGGANIVRAHNVKDNLDAVKL 470

Query: 469 CDSMLTRRKSLA 480
           CD+M+ R +S A
Sbjct: 471 CDAMVKRERSQA 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423430|ref|XP_002273643.1| PREDICTED: folic acid synthesis protein fol1-like [Vitis vinifera]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/489 (76%), Positives = 427/489 (87%), Gaps = 31/489 (6%)

Query: 23  ATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLY 82
           ATC S  HSS  T+VEV SQ+QEVVIA+GSNVG+R+ NFNEALQLMKK G++ITRHGCLY
Sbjct: 21  ATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDNFNEALQLMKKSGMHITRHGCLY 80

Query: 83  ETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFY 142
           ETEP YVTDQP FLNSAVRG+TKLGPHELL VLKKIEKDMGRT+GIR+GPRPIDLDILFY
Sbjct: 81  ETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEKDMGRTDGIRYGPRPIDLDILFY 140

Query: 143 GRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDT-------------------KL 183
           G+F ++S+ LT+PHERIWERPFV+APL+D++GS++ESDT                   KL
Sbjct: 141 GKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESDTVASWHSFSKLSGGLFESWEKL 200

Query: 184 GGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLM 243
           GGESLIGK G+KRVLP GN+LWDWSLKTS+MGILNLTPDSFSDGGKFQSVEAAVSQVRLM
Sbjct: 201 GGESLIGKNGLKRVLPTGNVLWDWSLKTSMMGILNLTPDSFSDGGKFQSVEAAVSQVRLM 260

Query: 244 ISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS 303
           I EGAD+IDIGAQSTRPMA+++SA++EL+RLIPVL+AVL MPE+EGKL+SVDTF+S+VAS
Sbjct: 261 ILEGADIIDIGAQSTRPMASRLSAQEELDRLIPVLDAVLKMPEVEGKLLSVDTFHSEVAS 320

Query: 304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQV 363
           EA+GKGAHIVNDVSAGQLDP+M  VVA LKVPYVAMHMRG+PSTMQN ENLQYD+VC+QV
Sbjct: 321 EAIGKGAHIVNDVSAGQLDPNMLDVVASLKVPYVAMHMRGNPSTMQNSENLQYDNVCEQV 380

Query: 364 ASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG------------LAASHA 411
           ASELY +VRDAELSGIPAWRIIIDPG+GFSK  EHNLDIL+G            LA SHA
Sbjct: 381 ASELYLRVRDAELSGIPAWRIIIDPGIGFSKNTEHNLDILMGLPNIRMELAGKSLALSHA 440

Query: 412 PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDS 471
           P+LIGPSRKRFLG+IC RP+A ERDPATIA++TAGVLGGANIVR HN++DNLDAVKLCD+
Sbjct: 441 PMLIGPSRKRFLGDICARPAAAERDPATIAAVTAGVLGGANIVRAHNVKDNLDAVKLCDA 500

Query: 472 MLTRRKSLA 480
           M+ R +S A
Sbjct: 501 MVKRERSQA 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099000|ref|XP_002311349.1| predicted protein [Populus trichocarpa] gi|222851169|gb|EEE88716.1| predicted protein [Populus trichocarpa]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/479 (78%), Positives = 420/479 (87%), Gaps = 31/479 (6%)

Query: 31  SSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVT 90
           SSPET VE++SQE+EVVIA+GSNVG+RL NFNEAL+LMKK G+NITRH CLYET PAYVT
Sbjct: 2   SSPETFVEIRSQEKEVVIALGSNVGNRLHNFNEALRLMKKSGINITRHACLYETAPAYVT 61

Query: 91  DQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSD 150
           DQP+FLNSAVRGVTKL PHELLGVLKKIEKDMGRT GIR+GPRPIDLDILFYG+F + SD
Sbjct: 62  DQPQFLNSAVRGVTKLWPHELLGVLKKIEKDMGRTAGIRYGPRPIDLDILFYGKFRVSSD 121

Query: 151 TLTVPHERIWERPFVVAPLLDLLGSSVESDT-------------------KLGGESLIGK 191
            LTVPHERIWERPFV+APL+DLLG+ VE+DT                   KLGGE +IGK
Sbjct: 122 ILTVPHERIWERPFVMAPLMDLLGADVENDTVACWHSLSIHSGGLFESWEKLGGECIIGK 181

Query: 192 EGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI 251
           +GMKRVLPIGN LWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI
Sbjct: 182 DGMKRVLPIGNDLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI 241

Query: 252 DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH 311
           D+GAQSTRPMA++IS ++EL+RLIPVLEA+L MPEM GKL+SVDTFYS+VASEAV KGAH
Sbjct: 242 DLGAQSTRPMASRISPQEELDRLIPVLEAILKMPEMNGKLISVDTFYSEVASEAVSKGAH 301

Query: 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKV 371
           IVNDVS GQLDP+M KVVAGL+VPYVAMHMRGDP+TMQN ENLQYDDVCKQVASELYS+V
Sbjct: 302 IVNDVSGGQLDPNMTKVVAGLEVPYVAMHMRGDPATMQNSENLQYDDVCKQVASELYSRV 361

Query: 372 RDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG------------LAASHAPILIGPSR 419
           +DAELSGIP WRIIIDPGLGFSKK EHNL++L+G            LA SH+P+L+G SR
Sbjct: 362 KDAELSGIPVWRIIIDPGLGFSKKTEHNLELLMGLPSIRAEIARKSLAMSHSPVLVGSSR 421

Query: 420 KRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           K+FLGE C+RP+A ERDPAT+AS+TAGVLGGANIVRVHN+RDNLDAVKLCD+ML  ++S
Sbjct: 422 KKFLGETCSRPAASERDPATVASVTAGVLGGANIVRVHNVRDNLDAVKLCDAMLKYKRS 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238684536|gb|ACR54435.1| dihydropterin pyrophosphokinase-dihydropteroate synthase [Solanum lycopersicum]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/508 (68%), Positives = 409/508 (80%), Gaps = 31/508 (6%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCN 60
           MN+F   LP + G     K C A      HSSP+  VEV S EQEV+IA+GSNVG+RL N
Sbjct: 1   MNVFRRFLPKKIGFKTSKKSCYAPGVCSIHSSPDCVVEVHSPEQEVIIALGSNVGNRLNN 60

Query: 61  FNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK 120
           F+EAL LMK+ G+ ITRH CLYET PAYVTDQP+FLNSAVRGVTKLGPHELL  LKKIEK
Sbjct: 61  FDEALHLMKQSGIKITRHACLYETAPAYVTDQPQFLNSAVRGVTKLGPHELLRALKKIEK 120

Query: 121 DMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180
           DMGRT GIR+GPRPIDLDILFYG+F IHS+ L VPHERIWERPFVVAPL+DLLGS ++ D
Sbjct: 121 DMGRTTGIRYGPRPIDLDILFYGKFKIHSEILDVPHERIWERPFVVAPLIDLLGSDIDDD 180

Query: 181 T-------------------KLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTP 221
           T                   KLGGESL+G+ GMKRVLP+GN LWDWSLKTS+MGILNLTP
Sbjct: 181 TVASWHSFSKHSSDLFELWEKLGGESLVGRNGMKRVLPVGNHLWDWSLKTSLMGILNLTP 240

Query: 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV 281
           DSFSDGGK+ SVEAAVSQ RLM+SEGADMID GAQSTRP A+KIS E+EL+RLIPV+E V
Sbjct: 241 DSFSDGGKYISVEAAVSQARLMLSEGADMIDFGAQSTRPNASKISVEEELDRLIPVIEGV 300

Query: 282 LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341
             +PE EGKL+SVDTFYS+VASEAV +G H+VNDVS G+LD +M+ VVA L+VPYVAMHM
Sbjct: 301 TKIPEAEGKLLSVDTFYSEVASEAVKRGVHLVNDVSGGRLDSNMHSVVAALRVPYVAMHM 360

Query: 342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLD 401
           RGDPS+MQN ENLQY DVCK VASELY ++++AEL+GIPAWR+IIDPG+GFSK  EHNLD
Sbjct: 361 RGDPSSMQNPENLQYIDVCKDVASELYVRLKEAELAGIPAWRLIIDPGIGFSKNTEHNLD 420

Query: 402 ILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG 449
           IL G            LA SH P+LIGPSRKRF+G++C RP+ADERDPAT+A++T GVL 
Sbjct: 421 ILTGLTTIRAEIARRSLALSHTPLLIGPSRKRFIGDVCARPAADERDPATVAAVTTGVLN 480

Query: 450 GANIVRVHNIRDNLDAVKLCDSMLTRRK 477
           GAN+VRVHN+R N DA++LCD++L R++
Sbjct: 481 GANVVRVHNVRYNADALRLCDALLERKQ 508

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499917|ref|XP_003518782.1| PREDICTED: folic acid synthesis protein fol1-like [Glycine max]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/512 (68%), Positives = 420/512 (82%), Gaps = 34/512 (6%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCN 60
           M+I   L   R  + A  K      +S FH++ +++VE+ SQE+EVVIA+GSNVGDRL N
Sbjct: 6   MSILKCLGEPRNKLFAARKYLEGLGFSSFHTASKSSVELHSQEEEVVIALGSNVGDRLHN 65

Query: 61  FNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK 120
           F EAL+LM+  G+NITRH CLYET PAYVTDQPRF+NSAVR VTKLGPHELL  LKKIEK
Sbjct: 66  FKEALKLMRNSGINITRHACLYETAPAYVTDQPRFINSAVRAVTKLGPHELLSALKKIEK 125

Query: 121 DMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180
           D+GRT GIR+GPRPIDLDILFYG++ + SD LT+PHERIWERPFV+APL+DLLGS+++SD
Sbjct: 126 DLGRTGGIRYGPRPIDLDILFYGKYKVRSDILTIPHERIWERPFVMAPLMDLLGSAIDSD 185

Query: 181 T-------------------KLGGESLIG---KEGMKRVLPIGNLLWDWSLKTSVMGILN 218
           T                    LG ESLIG   KEGM RV+P+ N L DWS +TSVMGILN
Sbjct: 186 TVASWHSFSGHSRGLTGLWEDLGSESLIGEFGKEGMYRVMPVANGLLDWSRRTSVMGILN 245

Query: 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL 278
           +TPDSFSDGG F+SVE+AV QVRLMISEGADMIDIGAQSTRP A++ISA +EL RLIPVL
Sbjct: 246 VTPDSFSDGGNFKSVESAVYQVRLMISEGADMIDIGAQSTRPTASRISAAEELGRLIPVL 305

Query: 279 EAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338
           EAV++MPE+EGKL+SVDTFYS+VASEAV KGAH++NDVSAGQLD +M+KV+A L VPYVA
Sbjct: 306 EAVVSMPEVEGKLISVDTFYSEVASEAVSKGAHLINDVSAGQLDSNMFKVMADLDVPYVA 365

Query: 339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEH 398
           MHMRGDPSTMQN ENL+Y +VCK+++SELYS+VR+AE+ GIPAWRI+IDPG+GFSKK EH
Sbjct: 366 MHMRGDPSTMQNSENLKYGNVCKEISSELYSRVREAEMLGIPAWRIMIDPGIGFSKKTEH 425

Query: 399 NLDILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446
           NLDIL+G            LA SHAP+LIGPSRKRFLGEIC+RP A +RDP+TIAS+TAG
Sbjct: 426 NLDILMGLPDIREEIATRSLAISHAPMLIGPSRKRFLGEICSRPDAAKRDPSTIASVTAG 485

Query: 447 VLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           VLGGANIVRVHN++DNLDAVK+CD++L ++ S
Sbjct: 486 VLGGANIVRVHNVKDNLDAVKVCDAILRQKSS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467235|ref|XP_004151330.1| PREDICTED: folic acid synthesis protein fol1-like [Cucumis sativus]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/510 (69%), Positives = 411/510 (80%), Gaps = 36/510 (7%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPE-TTVEVQSQEQEVVIAMGSNVGDRLC 59
           MNI    + +++G     +   A   SF HSS +   VE+ SQEQEVVIA+GSNVGDRL 
Sbjct: 1   MNILKRCIISKQG----FRYGGALQISFLHSSSQDKVVEICSQEQEVVIALGSNVGDRLQ 56

Query: 60  NFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE 119
           NFNEAL+LMKK G++ITRH CLYET PAYVTDQP+FLNSAVR VTKLGPHELL  +K IE
Sbjct: 57  NFNEALRLMKKAGIHITRHACLYETAPAYVTDQPQFLNSAVRAVTKLGPHELLSAVKNIE 116

Query: 120 KDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVES 179
           K +GRT GIR+GPRPIDLDIL YGR+ +HSDTLT+PHERIWERPFV+APL+DLLGS V++
Sbjct: 117 KQLGRTAGIRYGPRPIDLDILLYGRYKVHSDTLTIPHERIWERPFVLAPLIDLLGSDVDT 176

Query: 180 D-------------------TKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLT 220
           D                    K+GGE L+GKEGM+RVL IGN LWDWS KTSVMG+LNLT
Sbjct: 177 DDVASWHSLAADHGGLFESWEKVGGEYLVGKEGMRRVLSIGNSLWDWSCKTSVMGVLNLT 236

Query: 221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEA 280
           PDSFSDGGKFQS+EAAVSQVR M+S+GADMIDIGAQSTRPMA  IS E+EL+RLIPVLEA
Sbjct: 237 PDSFSDGGKFQSIEAAVSQVRSMVSDGADMIDIGAQSTRPMAPMISVEEELDRLIPVLEA 296

Query: 281 VLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH 340
           V  MPEM GKL+SVDTFYSKVA EAV +GAHIVNDVSAG LDP+M+KVVA L VPY+AMH
Sbjct: 297 VTRMPEMSGKLISVDTFYSKVALEAVKRGAHIVNDVSAGNLDPEMHKVVADLNVPYIAMH 356

Query: 341 MRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNL 400
           MRGDPSTMQN+ENLQYDDVC Q+A EL+SK+RDAE SGIPAWRIIIDPG+GFSK  + NL
Sbjct: 357 MRGDPSTMQNKENLQYDDVCNQIALELHSKIRDAESSGIPAWRIIIDPGVGFSKTTKQNL 416

Query: 401 DILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVL 448
           +IL G            L  SHAP+LIGPSRK+FLGE+C+R  A ERDPATIA++T GVL
Sbjct: 417 EILTGIPKIRAAIAKRSLGLSHAPMLIGPSRKKFLGEVCSRSVATERDPATIAAVTVGVL 476

Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           GGANIVRVHN+R+N+DAV+LCD+M   +KS
Sbjct: 477 GGANIVRVHNVRNNVDAVRLCDAMQKEKKS 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524504|ref|XP_004169262.1| PREDICTED: folic acid synthesis protein fol1-like [Cucumis sativus]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/510 (69%), Positives = 411/510 (80%), Gaps = 36/510 (7%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPE-TTVEVQSQEQEVVIAMGSNVGDRLC 59
           MNI    + +++G     +   A   SFFHSS +   VE+ SQEQEVVIA+GSNVGDRL 
Sbjct: 1   MNILKRCIISKQG----FRYGGALQISFFHSSSQDKVVEICSQEQEVVIALGSNVGDRLQ 56

Query: 60  NFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE 119
           NFNEAL+LMKK G++ITRH CLYET PAYVTDQP+FLNSAVR VTKLGPHELL  +K IE
Sbjct: 57  NFNEALRLMKKAGIHITRHACLYETAPAYVTDQPQFLNSAVRAVTKLGPHELLSAVKNIE 116

Query: 120 KDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVES 179
           K +GRT GIR+GPRPIDLDIL YGR+ +HSDTLT+PHERIWERPFV+APL+DLLGS V++
Sbjct: 117 KQLGRTAGIRYGPRPIDLDILLYGRYKVHSDTLTIPHERIWERPFVLAPLIDLLGSDVDT 176

Query: 180 D-------------------TKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLT 220
           D                    K+GGE L+GKEGM+RVL IGN LWDWS KTSVMG+LNLT
Sbjct: 177 DDVASWHSLAADHGGLFESWEKVGGEYLVGKEGMRRVLSIGNSLWDWSCKTSVMGVLNLT 236

Query: 221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEA 280
           PDSFSDGGKFQS+EAAVSQVR M+S+GADMIDIGAQSTRPMA  IS E+EL+RLIPVLEA
Sbjct: 237 PDSFSDGGKFQSIEAAVSQVRSMVSDGADMIDIGAQSTRPMAPMISVEEELDRLIPVLEA 296

Query: 281 VLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH 340
           V  M EM GKL+SVDTFYSKVA EAV +GAHIVNDVSAG LDP+M+KVVA L VPY+AMH
Sbjct: 297 VTRMAEMSGKLISVDTFYSKVALEAVKRGAHIVNDVSAGNLDPEMHKVVADLNVPYIAMH 356

Query: 341 MRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNL 400
           MRGDPSTMQN+ENLQYDDVC Q+A EL+SK+RDAE SGIPAWRIIIDPG+GFSK  + NL
Sbjct: 357 MRGDPSTMQNKENLQYDDVCNQIALELHSKIRDAESSGIPAWRIIIDPGVGFSKTTKQNL 416

Query: 401 DILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVL 448
           +IL G            L  SHAP+LIGPSRK+FLGE+C+R  A +RDPATIA++T GVL
Sbjct: 417 EILTGIPKIRAAIAKRSLGLSHAPMLIGPSRKKFLGEVCSRSVATDRDPATIAAVTVGVL 476

Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           GGANIVRVHN+R+N+DAV+LCD+M   +KS
Sbjct: 477 GGANIVRVHNVRNNVDAVRLCDAMQKEKKS 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498014|ref|XP_003517850.1| PREDICTED: LOW QUALITY PROTEIN: folic acid synthesis protein fol1-like [Glycine max]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/512 (68%), Positives = 420/512 (82%), Gaps = 35/512 (6%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCN 60
           M+I   L   R  + A  K  +   +S FH++  ++VE  SQE+EVVIA+GSNVGDRL N
Sbjct: 1   MSILMYLGEPRHKLFAARKYLKGVGFSSFHTASNSSVE-HSQEEEVVIALGSNVGDRLHN 59

Query: 61  FNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK 120
           F EAL+LM+  G+NITRH CLYET PAYVTDQPRF+ SAVR VTKLGPHELL  LK+IEK
Sbjct: 60  FKEALKLMRNSGINITRHACLYETAPAYVTDQPRFIYSAVRAVTKLGPHELLSTLKRIEK 119

Query: 121 DMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180
           D+GRT+G+R+GPRPIDLDILFYG++ + SD LT+PHERIWERPFV+APL+DLLGS+++SD
Sbjct: 120 DLGRTDGMRYGPRPIDLDILFYGKYKVRSDILTIPHERIWERPFVMAPLMDLLGSAIDSD 179

Query: 181 T-------------------KLGGESLIG---KEGMKRVLPIGNLLWDWSLKTSVMGILN 218
           T                    LG ESLIG   KEGM RV+P+ N L DWS +TSVMGILN
Sbjct: 180 TVTSWNSFSGHSRGLSGLWEDLGSESLIGEFGKEGMYRVMPVANGLLDWSWRTSVMGILN 239

Query: 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL 278
           +TPDSFSDGG FQSVE+AVSQVRLMISEGADMIDIGA STRPMA++ISAE+EL RLIPVL
Sbjct: 240 VTPDSFSDGGHFQSVESAVSQVRLMISEGADMIDIGALSTRPMASRISAEEELGRLIPVL 299

Query: 279 EAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338
           EAV++MPE+EGKL+SVDTFYS+VASEAV KGAH +NDVSAG+LD +M+KV+A L VPYVA
Sbjct: 300 EAVVSMPEVEGKLISVDTFYSEVASEAVSKGAHFINDVSAGKLDSNMFKVMADLNVPYVA 359

Query: 339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEH 398
           MHMRGDPSTMQN ENL+YD+VC++++SELYS+VR+AE+SGIP WRI+IDPG+GFSKK EH
Sbjct: 360 MHMRGDPSTMQNSENLKYDNVCEEISSELYSRVREAEMSGIPGWRIMIDPGVGFSKKTEH 419

Query: 399 NLDILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446
           NLDIL+G            LA SHAP+LIGPSRKRFLGEIC+R  A ERDPATIAS+TAG
Sbjct: 420 NLDILMGLPDIREEIASRSLAISHAPMLIGPSRKRFLGEICSRSDAAERDPATIASVTAG 479

Query: 447 VLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           VLGGANIVRVHN++DNLDAVK+CD++L ++ S
Sbjct: 480 VLGGANIVRVHNVKDNLDAVKVCDAILRQKSS 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1934972|emb|CAA69903.1| dihydropterin pyrophosphokinase /dihydropteroate synthase [Pisum sativum]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/484 (71%), Positives = 411/484 (84%), Gaps = 31/484 (6%)

Query: 26  YSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETE 85
           +S FH++P +++E+Q+Q++EVVIA+GSNVGDRL NF EAL+LM+K G++ITRH  LYET 
Sbjct: 26  FSSFHTAPNSSIEIQTQDEEVVIALGSNVGDRLHNFKEALKLMRKSGIHITRHASLYETA 85

Query: 86  PAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRF 145
           PAYVTDQPRFLNSAVR  TKLGPHELL  LK+IEKDMGRT+GIR+GPRPIDLDILFYG+F
Sbjct: 86  PAYVTDQPRFLNSAVRADTKLGPHELLAALKRIEKDMGRTDGIRYGPRPIDLDILFYGKF 145

Query: 146 SIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDT-------------------KLGGE 186
            + SD LTVPHERIWERPFV+APL+DLLG++++SDT                   KLGGE
Sbjct: 146 KVRSDILTVPHERIWERPFVMAPLMDLLGTAIDSDTVASWHSFSGHSGGLNALWEKLGGE 205

Query: 187 SLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISE 246
           SLIG+EGM RV+P+ N L DWS +T VMGILNLTPDSFSDGG FQSV++AVSQ RLMISE
Sbjct: 206 SLIGEEGMYRVMPVANGLLDWSRRTLVMGILNLTPDSFSDGGNFQSVKSAVSQARLMISE 265

Query: 247 GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV 306
           GAD+IDIGAQSTRPMA++ISAE+EL RLIPVLEAV+++PE+EGKL+SVDTFYS+VA EAV
Sbjct: 266 GADIIDIGAQSTRPMASRISAEEELGRLIPVLEAVMSIPEVEGKLISVDTFYSEVALEAV 325

Query: 307 GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE 366
            KGAHI+NDVSAG+LD  M+KV+A L VPYVAMHMRGDPSTMQ+ ENL+YD+VCK ++SE
Sbjct: 326 RKGAHIINDVSAGKLDASMFKVMAELDVPYVAMHMRGDPSTMQDSENLKYDNVCKDISSE 385

Query: 367 LYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG------------LAASHAPIL 414
           LYS+VR+AE+SGIPAWRII+DPG+GFSKK E NL  L G            LA SHAPIL
Sbjct: 386 LYSRVREAEISGIPAWRIIMDPGIGFSKKTEDNLAALTGIPDIREEISKRSLAISHAPIL 445

Query: 415 IGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT 474
           IGPSRKRFLGEIC+RPSA +RDPATIAS+TAGVL GANIVRVHN++DNLDAVKLCD++L 
Sbjct: 446 IGPSRKRFLGEICSRPSAVDRDPATIASVTAGVLCGANIVRVHNVKDNLDAVKLCDAILK 505

Query: 475 RRKS 478
           ++ S
Sbjct: 506 QKSS 509

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487651|ref|XP_003614113.1| Dihydropteroate synthase [Medicago truncatula] gi|355515448|gb|AES97071.1| Dihydropteroate synthase [Medicago truncatula]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/503 (67%), Positives = 413/503 (82%), Gaps = 31/503 (6%)

Query: 1   MNIFNLLLPTRRGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCN 60
           M+I   L   R  + A     +    S  H++P ++VE+ +Q++EVVIA+GSNVGDRL N
Sbjct: 1   MSILKYLSARRSQLCAARNYLKVLGLSSLHTAPNSSVELHTQDEEVVIALGSNVGDRLQN 60

Query: 61  FNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK 120
           F EAL+LM+K G+NITRH  LYET PAYVTDQPRFLNSAVR VTKLGPHELL  LK+IEK
Sbjct: 61  FKEALKLMRKSGINITRHASLYETAPAYVTDQPRFLNSAVRAVTKLGPHELLSALKRIEK 120

Query: 121 DMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180
           DMGRT+GIR+GPRP+DLDILFYG+F + SD LTVPHERIWERPFV+APL+DLLG++V++D
Sbjct: 121 DMGRTDGIRYGPRPMDLDILFYGKFKVRSDILTVPHERIWERPFVMAPLMDLLGTAVDND 180

Query: 181 T-------------------KLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTP 221
           T                   KLGGESLIG+EGM RV+P+ N L DWS +T VMG+LNLTP
Sbjct: 181 TVASWHSFSGHSGGLNALWEKLGGESLIGEEGMTRVMPVANGLLDWSQRTLVMGVLNLTP 240

Query: 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV 281
           DSFSDGG F+SVE+AVSQ RLMISEGAD+IDIGAQSTRPMA++IS E+EL RLIPVLEAV
Sbjct: 241 DSFSDGGNFRSVESAVSQARLMISEGADIIDIGAQSTRPMASRISVEEELGRLIPVLEAV 300

Query: 282 LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341
           +++PE EGKL+SVDTFYS+VASEAV +GAH++NDVSAG+LD +M+KV+A L VPYVAMHM
Sbjct: 301 MSIPEAEGKLISVDTFYSEVASEAVRRGAHLINDVSAGKLDSNMFKVMADLDVPYVAMHM 360

Query: 342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLD 401
           RGDP TMQN ENL+YD+VCK ++SELY++V++AE+SGIPAWRII+DPG+GFSKK E NL+
Sbjct: 361 RGDPCTMQNNENLKYDNVCKDISSELYAQVKEAEMSGIPAWRIIMDPGIGFSKKTEDNLE 420

Query: 402 ILLG------------LAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG 449
           +L G            LA SHAPILIGPSRKRFLGEIC+R SA ERDPATIA++TA VLG
Sbjct: 421 VLAGIPDIRAEFSKRSLAISHAPILIGPSRKRFLGEICSRTSAVERDPATIAAVTACVLG 480

Query: 450 GANIVRVHNIRDNLDAVKLCDSM 472
           GANIVRVHN++DNLDA+K+CD++
Sbjct: 481 GANIVRVHNVKDNLDAIKICDAI 503

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
UNIPROTKB|O04862	515	O04862 "Dihydropterin pyrophos	0.618	0.576	0.747	1.9e-179
TAIR|locus:2026471	484	AT1G69190 [Arabidopsis thalian	0.631	0.626	0.658	8.5e-162
ASPGD|ASPL0000000767	434	AN6032 [Emericella nidulans (t	0.814	0.900	0.408	2.1e-68
POMBASE|SPBC1734.03	733	SPBC1734.03 "trifunctional dih	0.862	0.564	0.385	1.2e-67
DICTYBASE|DDB_G0278283	657	fol1 "dihydro-6-hydroxymethylp	0.312	0.228	0.404	3.6e-62
CGD|CAL0000317	788	FOL1 [Candida albicans (taxid:	0.318	0.194	0.431	4.8e-62
UNIPROTKB|G4MSK9	577	MGG_01474 "Folic acid synthesi	0.487	0.405	0.407	6.1e-60
SGD|S000005200	824	FOL1 "Multifunctional enzyme o	0.314	0.183	0.381	3.4e-53
TIGR_CMR|CHY_2383	294	CHY_2383 "dihydropteroate synt	0.522	0.853	0.423	8.3e-51
TIGR_CMR|GSU_1808	303	GSU_1808 "dihydropteroate synt	0.552	0.874	0.405	1.6e-47

UNIPROTKB|O04862 O04862 "Dihydropterin pyrophosphokinase /dihydropteroate synthase" [Pisum sativum (taxid:3888)]

 Score = 1170 (416.9 bits), Expect = 1.9e-179, Sum P(2) = 1.9e-179
 Identities = 231/309 (74%), Positives = 270/309 (87%)

Query:   182 KLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVR 241
             KLGGESLIG+EGM RV+P+ N L DWS +T VMGILNLTPDSFSDGG FQSV++AVSQ R
Sbjct:   201 KLGGESLIGEEGMYRVMPVANGLLDWSRRTLVMGILNLTPDSFSDGGNFQSVKSAVSQAR 260

Query:   242 LMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV 301
             LMISEGAD+IDIGAQSTRPMA++ISAE+EL RLIPVLEAV+++PE+EGKL+SVDTFYS+V
Sbjct:   261 LMISEGADIIDIGAQSTRPMASRISAEEELGRLIPVLEAVMSIPEVEGKLISVDTFYSEV 320

Query:   302 ASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCK 361
             A EAV KGAHI+NDVSAG+LD  M+KV+A L VPYVAMHMRGDPSTMQ+ ENL+YD+VCK
Sbjct:   321 ALEAVRKGAHIINDVSAGKLDASMFKVMAELDVPYVAMHMRGDPSTMQDSENLKYDNVCK 380

Query:   362 QVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG------------LAAS 409
              ++SELYS+VR+AE+SGIPAWRII+DPG+GFSKK E NL  L G            LA S
Sbjct:   381 DISSELYSRVREAEISGIPAWRIIMDPGIGFSKKTEDNLAALTGIPDIREEISKRSLAIS 440

Query:   410 HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLC 469
             HAPILIGPSRKRFLGEIC+RPSA +RDPATIAS+TAGVL GANIVRVHN++DNLDAVKLC
Sbjct:   441 HAPILIGPSRKRFLGEICSRPSAVDRDPATIASVTAGVLCGANIVRVHNVKDNLDAVKLC 500

Query:   470 DSMLTRRKS 478
             D++L ++ S
Sbjct:   501 DAILKQKSS 509

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=IDA

GO:0004156 "dihydropteroate synthase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046656 "folic acid biosynthetic process" evidence=IDA

TAIR|locus:2026471 AT1G69190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1076 (383.8 bits), Expect = 8.5e-162, Sum P(2) = 8.5e-162
 Identities = 208/316 (65%), Positives = 261/316 (82%)

Query:   174 GSSVESDTKLGGESLIGKEGM-KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQS 232
             G   ++  +LGGESL+GK+G+ +RV+PIG+ LWD+S KT VMGILNLTPDSFSDGGKFQS
Sbjct:   164 GGIFQAWERLGGESLLGKDGIIQRVIPIGDHLWDFSKKTYVMGILNLTPDSFSDGGKFQS 223

Query:   233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292
             V+ AVS+VR MISEG D+IDIGAQSTRPMA++IS+++E++RLIPVL+ V  M EM+GKL+
Sbjct:   224 VDTAVSRVRSMISEGVDIIDIGAQSTRPMASRISSQEEIDRLIPVLKVVRGMAEMKGKLI 283

Query:   293 SVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE 352
             SVDTF S+VA EA+  GA I+NDVS G LD +M+KVVA   VPY+ MHMRGDP TMQN+E
Sbjct:   284 SVDTFNSEVALEAIRNGADILNDVSGGSLDENMHKVVADSDVPYMIMHMRGDPCTMQNKE 343

Query:   353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL------ 406
             NL+Y+++CK VA+ELY +VR+AELSGIPAWRI+IDPG+GFSK  +HNLDI++ L      
Sbjct:   344 NLEYNEICKDVATELYERVREAELSGIPAWRIMIDPGIGFSKGIDHNLDIVMELPKIREE 403

Query:   407 ------AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIR 460
                     SHAPILIGPSRKRFLG+IC RP A ERD AT+A +TAG+L GANI+RVHN+R
Sbjct:   404 MAKKSIGLSHAPILIGPSRKRFLGDICGRPEASERDAATVACVTAGILKGANIIRVHNVR 463

Query:   461 DNLDAVKLCDSMLTRR 476
             DN+DA +LCD+M+T+R
Sbjct:   464 DNVDAARLCDAMMTKR 479

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=IEA;IDA

GO:0004156 "dihydropteroate synthase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0042558 "pteridine-containing compound metabolic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IDA

ASPGD|ASPL0000000767 AN6032 [Emericella nidulans (taxid:162425)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 175/428 (40%), Positives = 234/428 (54%)

Query:    48 IAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLG 107
             IA+GSNVG+R+    +A   M + G+ + R   L+ET P Y  DQ  F+N          
Sbjct:    12 IALGSNVGERVEMIEKACLEMDRAGIKVQRTSSLFETAPMYYLDQEPFMN---------- 61

Query:   108 PHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVA 167
                  GV + IE  +GR   I  GPR IDLDIL Y +     D L +PH+ + ER FV+ 
Sbjct:    62 -----GVCESIEVSLGRKKLIDKGPRSIDLDILLYDQQVFTHDRLNIPHKLMLERDFVLR 116

Query:   168 PLLDLLGSSVE--SDTKLGGESLIGKEGMKRVLPIGNLL----------WDWSLKTSVMG 215
             PL  L+ + V      K    S +         P+               D S +T +M 
Sbjct:   117 PLSQLIPNEVPPFKGHKTTYLSHLASLPPPSPTPVATTYISPSFPPLRATDPSRRTHIMA 176

Query:   216 ILNLTPDSFSDGGK-FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL 274
             ILNLTPDSFSDGGK     EA  S VR  I  GA +IDIG +STRP +T +  ++EL R+
Sbjct:   177 ILNLTPDSFSDGGKHLAEPEAITSTVRSFIQSGATIIDIGGESTRPGSTPVGVDEELRRI 236

Query:   275 IPVLEAVLT-MPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLK 333
             IP +  + T +PE +   +SVDT+ ++VA+EA+  GA I+NDVSAG LDP+M   VA   
Sbjct:   237 IPAIRHIRTSIPEAKNIAISVDTYRARVAAEALAAGADIINDVSAGLLDPEMLPTVAQSG 296

Query:   334 VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFS 393
                + MHMRG PSTM    +   + V   V +EL ++V  AE +GI  WRII+DPGLGF+
Sbjct:   297 KSIILMHMRGSPSTMTKLTSYA-NGVISDVGTELLARVAAAEATGIRRWRIILDPGLGFA 355

Query:   394 KKAEHNLDILLGLAA-------SHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446
             K    +L IL   AA        + P L+GPSRKRF+G +     A ER   T A++TA 
Sbjct:   356 KNQAEDLTILKDFAALRKTQGLEYFPWLMGPSRKRFIGRLTGVEKASERGWGTAATVTAS 415

Query:   447 VLGGANIV 454
             V GGA+I+
Sbjct:   416 VAGGADIM 423

GO:0046656 "folic acid biosynthetic process" evidence=RCA

GO:0004150 "dihydroneopterin aldolase activity" evidence=RCA

GO:0004156 "dihydropteroate synthase activity" evidence=RCA

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=RCA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPBC1734.03 SPBC1734.03 "trifunctional dihydropteroatesynthase/2-amino-4-hydroxy-6-hydro xymethyldihydropteridinediphosphokinase/dihydroneopterin aldolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 170/441 (38%), Positives = 248/441 (56%)

Query:    48 IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
             ++ GSN+GD+      AL ++ K+ G+ +     LYETEP Y  DQP FLN   +  T++
Sbjct:   300 LSFGSNIGDKFEQIQTALSMLHKIEGIRVLDVSPLYETEPMYYKDQPSFLNGVCKIETRM 359

Query:   107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
              P  LL   + IE++MGR   I  GPR IDLDI+ Y      S+ LT+PH  + ER FV+
Sbjct:   360 SPINLLRACQSIEQEMGRIKTILKGPRCIDLDIVLYEDCVYESEVLTIPHLGLQEREFVL 419

Query:   167 APLLDLLGSSVESDTKLGGESLIGK---EGMKRVLPIGNL-LWDWSLKTSVMGILNLTPD 222
              PLL L    V   T    +  + K   +G++      N  + + +L    MGILN+TPD
Sbjct:   420 RPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKKIINGAL---TMGILNVTPD 476

Query:   223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV- 281
             SFSDGGK  S    + + + M+ +GA ++DIG QST+P A  +S E+EL R+IP++  + 
Sbjct:   477 SFSDGGKV-SQNNILEKAKSMVGDGASILDIGGQSTKPGADPVSVEEELRRVIPMISLLR 535

Query:   282 ---LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338
                +T+P      +S+DT+YSKVA  A+  GA+I+NDV+ G  D  M  + A L+VP   
Sbjct:   536 SSGITVP------ISIDTYYSKVAKLAIEAGANIINDVTGGMGDEKMLPLAASLQVPICI 589

Query:   339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEH 398
             MHMRG P TM+   ++   D+ ++VA EL S+V  A  SG+  + II+DPG GF+K  + 
Sbjct:   590 MHMRGTPETMK-ALSIYEKDIVEEVAVELSSRVEAAVQSGVHRYNIILDPGFGFAKTPKQ 648

Query:   399 NLDILLGL-AASHAPI------LIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGA 451
             +  +L  L      P       L GPSRK F G      S  +R   T A +TA VL G 
Sbjct:   649 SAGLLGRLHELMKKPQFKDMHWLSGPSRKGFTGYFTGDASPKDRIWGTSACVTASVLQGV 708

Query:   452 NIVRVHNIRDNLDAVKLCDSM 472
             +IVRVH+ ++    V + +++
Sbjct:   709 SIVRVHDTKEMSKVVGMANAI 729

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=ISS

GO:0004150 "dihydroneopterin aldolase activity" evidence=ISS

GO:0004156 "dihydropteroate synthase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0278283 fol1 "dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK)" [Dictyostelium discoideum (taxid:44689)]

 Score = 308 (113.5 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
 Identities = 66/163 (40%), Positives = 105/163 (64%)

Query:   194 MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDI 253
             +++V+ IGNL ++W+ KT +MGILN+TPDSF DGGKF ++E ++ Q   +I +GAD+IDI
Sbjct:   316 IEKVIRIGNLNYNWNDKTFIMGILNVTPDSFVDGGKFNTLEKSIQQATALIEQGADIIDI 375

Query:   254 GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV 313
             G QST P A +IS E+E+ R++P ++ +  +   +  L S+DT + +VA EA+  G +I+
Sbjct:   376 GGQSTYPGAQQISIEEEINRVVPTIKKIREVLGNDIPL-SIDTLHHQVAKEAILAGCNII 434

Query:   314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY 356
             NDVS G+            +VP +  H +     +Q ++N QY
Sbjct:   435 NDVS-GEF-----------RVPIILNHSQPTTQYLQQKQNEQY 465

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0042558 "pteridine-containing compound metabolic process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IEA

GO:0004150 "dihydroneopterin aldolase activity" evidence=IEA

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=IEA

GO:0004156 "dihydropteroate synthase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IEA

CGD|CAL0000317 FOL1 [Candida albicans (taxid:5476)]

 Score = 327 (120.2 bits), Expect = 4.8e-62, Sum P(4) = 4.8e-62
 Identities = 69/160 (43%), Positives = 104/160 (65%)

Query:   211 TSVMGILNLTPDSFSDGGKF--QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAE 268
             T +MGILN+TPDSFSDGGK   + ++  V Q   ++SEGA +IDIG  STRP + + + E
Sbjct:   469 TLIMGILNMTPDSFSDGGKHFGKELDNTVKQAEKLVSEGATIIDIGGVSTRPGSVEPTEE 528

Query:   269 KELERLIPVLEAVL--TMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMY 326
             +ELER+IP+++A+   + P++   L+SVDT+   VA +++  GA I+ND+S G+ D  ++
Sbjct:   529 EELERVIPLIKAIRQSSNPDLSKVLISVDTYRRNVAEQSLLVGADIINDISMGKYDEKIF 588

Query:   327 KVVAGLKVPYVAMHMRGDPSTMQ---NEENLQYDDVCKQV 363
              VVA    PY+  H RG P TM    N E+   DD+ + +
Sbjct:   589 DVVAKYGCPYIMNHTRGSPKTMSKLTNYESNTNDDIIEYI 628

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IEA

GO:0004150 "dihydroneopterin aldolase activity" evidence=IEA

GO:0004156 "dihydropteroate synthase activity" evidence=IEA

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=IEA

UNIPROTKB|G4MSK9 MGG_01474 "Folic acid synthesis protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 403 (146.9 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
 Identities = 101/248 (40%), Positives = 140/248 (56%)

Query:    48 IAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLG 107
             IA+GSN+GDR+    +A   M   G+ + R   L+ETEP YV +Q RF+N      T L 
Sbjct:    96 IALGSNMGDRIAMIEQACNEMDARGICVKRTSSLWETEPMYVLEQGRFVNGVCAVETSLE 155

Query:   108 PHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVA 167
             P  LL  L+ IE  MGR   I  GPR IDLDIL Y    +  D L +PH+ I ER FV+ 
Sbjct:   156 PLALLDQLQDIENSMGRQKVIDKGPRNIDLDILLYEGVKLKHDRLEIPHKGIPEREFVLR 215

Query:   168 PLLDLL-GSSVESDT--KLGGESL----IGKEGMKRVLPIG--NLLWDW---SLKTSVMG 215
             PL +L+   +V+ D   KL  + L    +    +  + P+   N        + +T VM 
Sbjct:   216 PLTELIPDKAVDPDRPWKLAQDYLNELPLSSPPLTTLTPLSPSNPPLQAVKPTRRTHVMA 275

Query:   216 ILNLTPDSFSDGGKFQSVEAAV--SQVRLMISEGADMIDIGAQSTRPMATKISAEKELER 273
             ILN+TPDSFSDGGK   ++ +   S V  +I  GA +ID+G QST P A ++S E+EL R
Sbjct:   276 ILNVTPDSFSDGGKHNPIDQSSLKSTVEDLIKSGATIIDVGGQSTAPGAPEVSLEEELAR 335

Query:   274 LIPVLEAV 281
             +IP ++A+
Sbjct:   336 VIPAVKAI 343

GO:0005575 "cellular_component" evidence=ND

SGD|S000005200 FOL1 "Multifunctional enzyme of the folic acid biosynthesis pathway" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 264 (98.0 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
 Identities = 63/165 (38%), Positives = 98/165 (59%)

Query:   211 TSVMGILNLTPDSFSDGGK-FQSVEAAVSQV------RLMISEGADMIDIGAQSTRPMAT 263
             T +M I N TPDSFSDGG+ F  +E+ ++ +       L + E   +ID+G  STRP + 
Sbjct:   504 TYIMAIFNATPDSFSDGGEHFADIESQLNDIIKLCKDALYLHESV-IIDVGGCSTRPNSI 562

Query:   264 KISAEKELERLIPVLEAVLTMPEM-EGKLV-SVDTFYSKVASEAVGKGAHIVNDVSAGQL 321
             + S E+E+ R IP+++A+    E+ + K++ S+DT+ S VA EA+  G  I+ND+S G  
Sbjct:   563 QASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGLF 622

Query:   322 DPDMYKVVA-GLKVPYVAMHMRGDPSTMQ---NEENLQYDDVCKQ 362
             D +M+ V+A   ++ Y+  H RGD STM    + EN    D  +Q
Sbjct:   623 DSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQ 667

GO:0016740 "transferase activity" evidence=IEA

GO:0003848 "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity" evidence=IEA;ISS;IDA

GO:0004150 "dihydroneopterin aldolase activity" evidence=IEA;ISS;IDA

GO:0004156 "dihydropteroate synthase activity" evidence=IEA;IMP;IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IEA;IMP

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IEA

GO:0042558 "pteridine-containing compound metabolic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

TIGR_CMR|CHY_2383 CHY_2383 "dihydropteroate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 113/267 (42%), Positives = 172/267 (64%)

Query:   210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
             +T +MGILN+TPDSFSDGG++  +EAAV + R M++EGAD+ID+G +STRP A  + AE+
Sbjct:    40 RTLIMGILNVTPDSFSDGGQYNDIEAAVKRARQMVAEGADIIDVGGESTRPGAEYVPAEE 99

Query:   270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
             EL R++PV+EA++    +    +SVDT+ ++VA +A+  GAHI+NDV   Q DP M +V 
Sbjct:   100 ELRRVLPVVEALVREINVP---ISVDTYKAEVAEKALEAGAHIINDVWGLQKDPRMAEVA 156

Query:   330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
             A    P V MH         N+   +YDD+  +V + L   ++    +GIP  +IIIDPG
Sbjct:   157 ARYGAPVVVMH---------NKTEAEYDDLMAEVIAFLKESIKIGVKAGIPREKIIIDPG 207

Query:   390 LGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPATIASITAG 446
             +GF K  EHNL ++  L   ++   PIL+G SRK  +G+  + P  +ER   T A++T G
Sbjct:   208 IGFGKTLEHNLLLMKRLNELNSLGQPILLGTSRKSMIGKTLDLP-VNERVEGTAATVTLG 266

Query:   447 VLGGANIVRVHNIRDNLDAVKLCDSML 473
             +  G +IVRVH++++ +   K+ D+M+
Sbjct:   267 IAKGVDIVRVHDVKEMVRVAKMTDAMV 293

GO:0004156 "dihydropteroate synthase activity" evidence=ISS

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1808 GSU_1808 "dihydropteroate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 112/276 (40%), Positives = 168/276 (60%)

Query:   206 DWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKI 265
             D + +  +MG+LN+TPDSFSDG  +    AA  +   M++EGAD++DIG +STRP A  +
Sbjct:    35 DLTSRPCIMGVLNVTPDSFSDGNCYLDPAAAEDRALAMVAEGADIVDIGGESTRPGAPSV 94

Query:   266 SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDM 325
             S  +E++R++P++E +     +    +SVDT+ + VA EA+  GA ++ND+S    DP M
Sbjct:    95 SEAEEMQRVVPLVERLAAKLPVP---LSVDTYKAAVAREALAAGAEVINDISGLTFDPGM 151

Query:   326 YKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL-YSKVRDAELSGIPAWRI 384
                VA  +   V MH RG P+ MQ +    YDD+  +V   L YS  R A+ +GIP  +I
Sbjct:   152 ATTVAEARAGLVVMHTRGTPAMMQRDT--AYDDLIAEVLGSLRYSMGR-AQAAGIPNEQI 208

Query:   385 IIDPGLGFSKKAEHNLDILLGLA--ASHA-PILIGPSRKRFLGEICNRPSADERDPATIA 441
             ++DPG+GF K  + NL+IL  LA  AS   PIL+G SRK F+G + +R  AD R   T A
Sbjct:   209 VVDPGIGFGKSVDGNLEILRRLAEFASLGRPILVGTSRKSFIGAVLDREVAD-RLFGTAA 267

Query:   442 SITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK 477
             ++   V  GA+I+RVH++R   D   +  ++L  R+
Sbjct:   268 TVAVAVANGASILRVHDVRAMRDVALMTRAILAPRR 303

GO:0004156 "dihydropteroate synthase activity" evidence=ISS

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O84619	FOLKP_CHLTR	2, ., 5, ., 1, ., 1, 5	0.3076	0.8437	0.9	yes	no
Q9Z7E8	FOLKP_CHLPN	2, ., 5, ., 1, ., 1, 5	0.3148	0.8687	0.9266	yes	no
P82602	FOLKP_CHLMU	2, ., 5, ., 1, ., 1, 5	0.3022	0.8479	0.9044	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.6	LOW CONFIDENCE prediction!
3rd Layer	2.7.6.3	LOW CONFIDENCE prediction!
4th Layer	2.5.1.15	0.737
3rd Layer	2.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030018001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (483 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00006492001	SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (536 aa)	•	•				•	•		0.990
	GSVIVG00005777001	SubName- Full=Chromosome chr3 scaffold_158, whole genome shotgun sequence; (214 aa)	•					•	•		0.975
	GSVIVG00025328001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (570 aa)	•	•				•	•		0.955
	GSVIVG00018404001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (832 aa)		•				•			0.899
	GSVIVG00014567001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (193 aa)	•						•		0.825
	GSVIVG00030640001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (141 aa)	•						•		0.805
	GSVIVG00001276001	SubName- Full=Chromosome undetermined scaffold_114, whole genome shotgun sequence; (290 aa)	•						•		0.761
	GSVIVG00024726001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (594 aa)	•						•		0.739
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)							•		0.737
	GSVIVG00036343001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (184 aa)	•						•		0.710

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	480
cd00739	257	cd00739, DHPS, DHPS subgroup of Pterin binding enz	1e-119
cd00423	258	cd00423, Pterin_binding, Pterin binding enzymes	3e-98
TIGR01496	257	TIGR01496, DHPS, dihydropteroate synthase	4e-98
COG0294	274	COG0294, FolP, Dihydropteroate synthase and relate	2e-83
pfam00809	210	pfam00809, Pterin_bind, Pterin binding enzyme	3e-80
PRK11613	282	PRK11613, folP, dihydropteroate synthase; Provisio	1e-65
cd00483	128	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-p	1e-53
pfam01288	127	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin	2e-51
COG0801	160	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-p	2e-44
TIGR01498	129	TIGR01498, folK, 2-amino-4-hydroxy-6-hydroxymethyl	4e-40
PRK13753	279	PRK13753, PRK13753, dihydropteroate synthase; Prov	4e-28
PRK10239	159	PRK10239, PRK10239, 2-amino-4-hydroxy-6-hydroxymet	9e-18
PRK14092	163	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymet	2e-17

>gnl|CDD|238380 cd00739, DHPS, DHPS subgroup of Pterin binding enzymes

 Score =  349 bits (898), Expect = e-119
 Identities = 128/263 (48%), Positives = 170/263 (64%), Gaps = 9/263 (3%)

Query: 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE 270
           T +MGILN+TPDSFSDGG+F S++ AV+    MI+EGAD+IDIG +STRP A  +S E+E
Sbjct: 1   TQIMGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEE 60

Query: 271 LERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA 330
           LER+IPVLEA+         L+SVDTF ++VA  A+  GA I+NDVS G  DP M +V A
Sbjct: 61  LERVIPVLEALR---GELDVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAA 117

Query: 331 GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390
               P V MHMRG P TMQ   N  Y+DV  +V S L +++  AE +G+   RII+DPG+
Sbjct: 118 EYGAPLVLMHMRGTPKTMQE--NPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGI 175

Query: 391 GFSKKAEHNLDILLGLA---ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447
           GF K  EHNL++L  L        P+L+G SRK F+G +  R    +RD  T+A      
Sbjct: 176 GFGKTPEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGRE-PKDRDWGTLALSALAA 234

Query: 448 LGGANIVRVHNIRDNLDAVKLCD 470
             GA+IVRVH+++   DA+K+ D
Sbjct: 235 ANGADIVRVHDVKATRDALKVAD 257

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Length = 257

>gnl|CDD|238242 cd00423, Pterin_binding, Pterin binding enzymes

 Score =  295 bits (758), Expect = 3e-98
 Identities = 127/262 (48%), Positives = 170/262 (64%), Gaps = 10/262 (3%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           +MGILN+TPDSFSDGGKF S++ A+   R M+ EGAD+IDIG +STRP A  +S E+ELE
Sbjct: 3   IMGILNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELE 62

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPVL A+   P+     +SVDTF ++VA  A+  GA I+NDVS G+ DP+M  + A  
Sbjct: 63  RVIPVLRALAGEPD---VPISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEY 119

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
             P V MHM G P TMQN  N  Y DV  +V   L  +V  A  +GIP   II+DPG+GF
Sbjct: 120 GAPVVLMHMDGTPQTMQN--NPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGF 177

Query: 393 SKKAEHNLDILLGLAA----SHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVL 448
            K  EHNL++L  L A       P+L+G SRK FLG++ +    D R   T A + A +L
Sbjct: 178 GKTEEHNLELLRRLDAFRELPGLPLLLGVSRKSFLGDLLSVGPKD-RLAGTAAFLAAAIL 236

Query: 449 GGANIVRVHNIRDNLDAVKLCD 470
            GA+IVRVH++++  DA+K+ +
Sbjct: 237 NGADIVRVHDVKELRDAIKVAE 258

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. Length = 258

>gnl|CDD|233439 TIGR01496, DHPS, dihydropteroate synthase

 Score =  295 bits (757), Expect = 4e-98
 Identities = 121/263 (46%), Positives = 176/263 (66%), Gaps = 10/263 (3%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           +MGI+N+TPDSFSDGG+F SV+ AV+    M+ EGAD+ID+G +STRP A ++S E+EL 
Sbjct: 2   IMGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELN 61

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R++PV++A+    +     +SVDT+ ++VA  A+  GA I+NDVS GQ DP M +V A  
Sbjct: 62  RVVPVIKAL---RDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEY 117

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            VP V MHMRG P TMQ  EN  Y+DV ++V   L ++  +   +G+ A RII+DPG+GF
Sbjct: 118 GVPLVLMHMRGTPRTMQ--ENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGF 175

Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG 449
            K  EHNL++L  L    A   P+L+G SRK F+G +   P  +ER   T+A+    V  
Sbjct: 176 GKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTP-PEERLEGTLAASAYAVQK 234

Query: 450 GANIVRVHNIRDNLDAVKLCDSM 472
           GA+IVRVH++++  DA+K+ +++
Sbjct: 235 GADIVRVHDVKETRDALKVLEAL 257

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284 [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 257

>gnl|CDD|223371 COG0294, FolP, Dihydropteroate synthase and related enzymes [Coenzyme metabolism]

 Score =  258 bits (661), Expect = 2e-83
 Identities = 114/276 (41%), Positives = 159/276 (57%), Gaps = 13/276 (4%)

Query: 205 WDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK 264
              SL   +MGILN+TPDSFSDGG+F S++ A+     MI+EGAD+IDIG +STRP A  
Sbjct: 2   VPLSLDPVIMGILNVTPDSFSDGGRFLSLDDALKHADKMIAEGADIIDIGGESTRPGAEF 61

Query: 265 ISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPD 324
           +S E+ELER+ PVLEAV          +SVDT  ++VA  A+G GA  +NDV  G +DP 
Sbjct: 62  VSVEEELERVDPVLEAV--RSPESDVAISVDTSRAEVAPLALGAGADEINDVDGGGIDPA 119

Query: 325 MYKVVAG-LKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383
           +   VA  L  P + MH +G P TM         D+   V   L +++ +A  +G+    
Sbjct: 120 LLAAVAAELGAPILLMHEQGVPETMSIN------DLVAAVDMFLLARIEEALAAGVGREL 173

Query: 384 IIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPATI 440
           II+DPG GF K  EHNL++L  L+       PIL+G SRK F+G I  R    ER   T+
Sbjct: 174 IILDPGFGFGKTPEHNLELLARLSEFLELGFPILVGHSRKSFIGAILGRD-PAERLEGTL 232

Query: 441 ASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476
           A+       GA+IVRVH++ +  + +K   ++   +
Sbjct: 233 ATELLAAALGADIVRVHDVYEGRELLKAEIALKLGK 268

Length = 274

>gnl|CDD|216130 pfam00809, Pterin_bind, Pterin binding enzyme

 Score =  247 bits (634), Expect = 3e-80
 Identities = 104/214 (48%), Positives = 140/214 (65%), Gaps = 9/214 (4%)

Query: 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275
           ILN+TPDSFSDGGKF S + A+ Q R M+ EGAD+IDIG +STRP A  +S E+ELERL+
Sbjct: 1   ILNVTPDSFSDGGKFFSPDKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLV 60

Query: 276 PVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVP 335
           PVLEA+      +   +S+DTF ++VA  A+  GA I+ND S G+ DP+M  + A    P
Sbjct: 61  PVLEAL--RDLYQDVPISIDTFNAEVAEAALKAGADIINDSSGGKDDPEMAPLAAEYGAP 118

Query: 336 YVAMHMRGDPSTMQNEENLQYD-DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSK 394
            V MHM G+P  MQ  E  +Y  DV +++   L  ++  AE +G+P  RII+DPG+GF K
Sbjct: 119 VVLMHMDGNPQGMQ--ETPEYRVDVVEELLRFLTERLEAAESAGVPPERIILDPGIGFGK 176

Query: 395 KAEHNLDILLGLAA----SHAPILIGPSRKRFLG 424
             EHNL++L  L A       P+L+G SRK F+G
Sbjct: 177 TEEHNLELLRTLDAFRELRGYPLLVGGSRKVFIG 210

This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyzes a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin. Length = 210

>gnl|CDD|183230 PRK11613, folP, dihydropteroate synthase; Provisional

 Score =  212 bits (541), Expect = 1e-65
 Identities = 105/265 (39%), Positives = 161/265 (60%), Gaps = 10/265 (3%)

Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17  VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELD 76

Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+ND+ +   +P   +  A  
Sbjct: 77  RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKAGAHIINDIRSLS-EPGALEAAAET 132

Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            +P   MHM+G+P TMQ  E  +YDDV  +V      ++   E +GI   ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGF 190

Query: 393 SKKAEHNLDILLGLAASH---APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG 449
            K   HN  +L  LA  H    P+L+G SRK  +G++ N     ER   ++A      + 
Sbjct: 191 GKNLSHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSERLSGSLACAVIAAMQ 249

Query: 450 GANIVRVHNIRDNLDAVKLCDSMLT 474
           GA I+RVH++++ ++A+++ ++ L+
Sbjct: 250 GAQIIRVHDVKETVEAMRVVEATLS 274

Length = 282

>gnl|CDD|238269 cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)

 Score =  175 bits (447), Expect = 1e-53
 Identities = 62/128 (48%), Positives = 79/128 (61%), Gaps = 1/128 (0%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
           V +A+GSN+GDRL N   AL+ +  L G+ I     LYET P   TDQP FLN+ V   T
Sbjct: 1   VYLALGSNLGDRLANLRAALRALAALPGIEILAVSPLYETAPVGFTDQPDFLNAVVELET 60

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPF 164
            L P ELL  L+ IE+ +GR    R GPR +DLDIL YG   I +  LT+PH R+ ER F
Sbjct: 61  SLSPLELLDALQAIEQRLGRVRKERWGPRTLDLDILLYGDEVIDTPDLTLPHPRMHERAF 120

Query: 165 VVAPLLDL 172
           V+ PL ++
Sbjct: 121 VLVPLAEI 128

Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK. Length = 128

>gnl|CDD|216414 pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)

 Score =  169 bits (432), Expect = 2e-51
 Identities = 64/127 (50%), Positives = 78/127 (61%), Gaps = 1/127 (0%)

Query: 47  VIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTK 105
            IA+GSN+GDR  N   AL+ +  L G+ I R   LYET P   TDQP FLN+ V   T 
Sbjct: 1   YIALGSNLGDREANLRAALEALAALPGIEILRVSSLYETAPVGFTDQPDFLNAVVELETT 60

Query: 106 LGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
           L P ELL +L+ IE  +GR    R GPR +DLDIL YG   I +  LT+PH RI ER FV
Sbjct: 61  LSPEELLALLQAIEAKLGRVRNERWGPRTLDLDILLYGDLVIDTPGLTLPHPRILERAFV 120

Query: 166 VAPLLDL 172
           + PL +L
Sbjct: 121 LVPLAEL 127

Length = 127

>gnl|CDD|223872 COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]

 Score =  152 bits (387), Expect = 2e-44
 Identities = 56/128 (43%), Positives = 74/128 (57%), Gaps = 1/128 (0%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
           V + +GSN+GDRL     AL  +  L  + +     +YET P    DQP FLN+ V   T
Sbjct: 4   VYLGLGSNLGDRLKQLRAALAALDALADIRVVAVSPIYETPPVGYEDQPDFLNAVVEVET 63

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPF 164
            L P ELL  L+ IE+ +GR    R GPR +DLDIL YG   I +  LT+PH R+ ER F
Sbjct: 64  TLSPRELLARLQAIERRLGRVRSERWGPRTLDLDILLYGDEVIETPRLTLPHPRMLERAF 123

Query: 165 VVAPLLDL 172
           V+ PL ++
Sbjct: 124 VLIPLAEI 131

Length = 160

>gnl|CDD|213631 TIGR01498, folK, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase

 Score =  140 bits (355), Expect = 4e-40
 Identities = 61/128 (47%), Positives = 76/128 (59%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTK 105
             IA+GSN+GDRL N   AL  +  L V +     +YET P   TDQP FLN+ V   T 
Sbjct: 1   AYIALGSNLGDRLKNLRAALAALAALPVRLLIVSSIYETPPWGFTDQPDFLNAVVEVETT 60

Query: 106 LGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
           L P ELL +L+ IE + GR    R GPR +DLDIL YG   + +  LTVPH R  ERPFV
Sbjct: 61  LAPRELLALLQAIEAEFGRVREFRWGPRTLDLDILLYGDEVLDTPDLTVPHPRALERPFV 120

Query: 166 VAPLLDLL 173
           + PL ++ 
Sbjct: 121 LLPLAEIA 128

This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 129

>gnl|CDD|184303 PRK13753, PRK13753, dihydropteroate synthase; Provisional

 Score =  112 bits (281), Expect = 4e-28
 Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
             +V GILNLT DSF D  +      AV+    M+  G+D++D+G  ++ P A  +S   
Sbjct: 1   MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPAD 60

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           E+ R+ P+L+A+      +   VS+D+F  +    A+ +G   +ND+  G  DP +Y  +
Sbjct: 61  EIRRIAPLLDAL----SDQMHRVSIDSFQPETQRYALKRGVGYLNDIQ-GFPDPALYPDI 115

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      V MH            +L+ +D   ++     ++V     SG+ A R+I+DPG
Sbjct: 116 AEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPG 175

Query: 390 LGF--SKKAEHNLDILLGL----AASHAPILIGPSRKRFLGEICNRPSADERDPATIASI 443
           +GF  S   E +L +L  L    +A   P+L+  SRK FLG     P  D   PA++A+ 
Sbjct: 176 MGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKD-LGPASLAAE 234

Query: 444 TAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476
              +  GA+ VR H   D   A+   +++   R
Sbjct: 235 LHAIGNGADYVRTHAPGDLRSAITFSETLAKFR 267

Length = 279

>gnl|CDD|182325 PRK10239, PRK10239, 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional

 Score = 80.2 bits (198), Expect = 9e-18
 Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +    I      Y T P    DQP +LN+AV   T L
Sbjct: 6   IAIGSNLASPLEQVNAALKALGDIPESRILAVSSFYRTPPLGPQDQPDYLNAAVALETAL 65

Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 66  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 125

Query: 166 VAPLLDL 172
           + PL ++
Sbjct: 126 LWPLFEI 132

Length = 159

>gnl|CDD|172582 PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 48  IAMGSNVGDRLCNFNEAL-QLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           + +G+N+GD        L +L    G+   +   LY T P      P F+N+     T L
Sbjct: 12  VGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQG-PDFVNAVAALDTTL 70

Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
            P +LL +L+ +E+  GR    R+ PR +DLD+L YG  +I    L+VPH R+ ER FV+
Sbjct: 71  APLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVL 130

Query: 167 APLLDL 172
           APL +L
Sbjct: 131 APLCEL 136

Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
KOG2544	711	consensus Dihydropteroate synthase/7,8-dihydro-6-h	100.0
PRK11613	282	folP dihydropteroate synthase; Provisional	100.0
PRK13753	279	dihydropteroate synthase; Provisional	100.0
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	100.0
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	100.0
cd00423	258	Pterin_binding Pterin binding enzymes. This family	100.0
COG0294	274	FolP Dihydropteroate synthase and related enzymes	100.0
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	100.0
COG0801	160	FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophospho	100.0
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	100.0
PRK14092	163	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	100.0
PRK10239	159	2-amino-4-hydroxy-6-hydroxymethyldihyropteridine p	100.0
cd00740	252	MeTr MeTr subgroup of pterin binding enzymes. This	100.0
TIGR01498	127	folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteri	100.0
cd00483	128	HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophospho	100.0
TIGR00284	499	dihydropteroate synthase-related protein. This pro	100.0
PF01288	127	HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosph	100.0
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	100.0
PRK09490	1229	metH B12-dependent methionine synthase; Provisiona	99.97
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	99.93
COG1410	842	MetH Methionine synthase I, cobalamin-binding doma	99.86
PRK04452	319	acetyl-CoA decarbonylase/synthase complex subunit	99.79
PRK00979	308	tetrahydromethanopterin S-methyltransferase subuni	99.78
TIGR00381	389	cdhD CO dehydrogenase/acetyl-CoA synthase, delta s	99.55
COG1456	467	CdhE CO dehydrogenase/acetyl-CoA synthase gamma su	99.31
PF03599	386	CdhD: CO dehydrogenase/acetyl-CoA synthase delta s	99.12
PF02007	296	MtrH: Tetrahydromethanopterin S-methyltransferase	98.76
PRK14047	310	putative methyltransferase; Provisional	98.47
TIGR01114	314	mtrH N5-methyltetrahydromethanopterin:coenzyme M m	98.37
COG2069	403	CdhD CO dehydrogenase/acetyl-CoA synthase delta su	97.98
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	97.97
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	97.85
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	97.78
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	97.77
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	97.76
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	97.75
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	97.74
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	97.73
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	97.65
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.64
PLN02925	733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	97.57
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	97.55
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	97.52
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	97.52
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	97.5
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	97.49
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	97.47
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	97.4
PLN02591	250	tryptophan synthase	97.38
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	97.38
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	97.37
PRK00694	606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	97.33
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	97.33
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	97.31
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	97.17
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	97.14
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	97.13
PRK12331	448	oxaloacetate decarboxylase; Provisional	97.09
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	97.09
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.07
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.03
PRK14041	467	oxaloacetate decarboxylase; Provisional	97.01
COG2089	347	SpsE Sialic acid synthase [Cell envelope biogenesi	97.0
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	96.98
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.93
PRK14040	593	oxaloacetate decarboxylase; Provisional	96.87
PRK09282	592	pyruvate carboxylase subunit B; Validated	96.86
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	96.83
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	96.79
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	96.79
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	96.78
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	96.65
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	96.61
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	96.59
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	96.58
TIGR03586	327	PseI pseudaminic acid synthase.	96.57
PLN03228	503	methylthioalkylmalate synthase; Provisional	96.57
PLN02746	347	hydroxymethylglutaryl-CoA lyase	96.54
COG1962	313	MtrH Tetrahydromethanopterin S-methyltransferase,	96.53
PRK12330	499	oxaloacetate decarboxylase; Provisional	96.52
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	96.51
PRK12581	468	oxaloacetate decarboxylase; Provisional	96.49
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.43
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.34
PRK00915	513	2-isopropylmalate synthase; Validated	96.27
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.23
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	96.2
PRK09389	488	(R)-citramalate synthase; Provisional	95.9
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.83
PRK07094	323	biotin synthase; Provisional	95.67
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	95.65
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.43
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.4
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	95.37
PRK12999	1146	pyruvate carboxylase; Reviewed	95.33
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.27
cd00465	306	URO-D_CIMS_like The URO-D_CIMS_like protein superf	95.26
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	94.93
PRK14042	596	pyruvate carboxylase subunit B; Provisional	94.89
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	94.82
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	94.74
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	94.61
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	94.61
PLN02389	379	biotin synthase	94.61
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	94.56
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.43
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	94.38
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.21
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.18
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.18
PLN02321	632	2-isopropylmalate synthase	94.18
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	94.17
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	94.06
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	93.95
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	93.94
PRK06252	339	methylcobalamin:coenzyme M methyltransferase; Vali	93.87
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	93.81
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	93.6
cd03465	330	URO-D_like The URO-D _like protein superfamily inc	93.53
PRK06256	336	biotin synthase; Validated	93.46
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	93.17
PRK15108	345	biotin synthase; Provisional	93.11
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	92.99
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	92.98
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	92.94
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	92.92
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	92.9
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	92.86
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	92.82
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.77
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	92.77
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	92.57
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	92.48
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	92.45
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	92.28
PLN02274	505	inosine-5'-monophosphate dehydrogenase	92.21
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	92.19
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	92.15
PTZ00413	398	lipoate synthase; Provisional	92.07
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	92.04
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	91.97
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	91.8
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	91.79
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	91.7
TIGR01463	340	mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi	91.69
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	91.68
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	91.65
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	91.58
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	91.45
cd00717	335	URO-D Uroporphyrinogen decarboxylase (URO-D) is a	91.18
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	91.18
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	91.11
cd03307	326	Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al	91.01
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	90.96
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	90.94
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	90.84
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	90.81
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	90.77
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	90.68
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	90.66
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	90.58
PRK12331	448	oxaloacetate decarboxylase; Provisional	90.56
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	90.55
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	90.51
PRK13352	431	thiamine biosynthesis protein ThiC; Provisional	90.38
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	90.35
PLN02433	345	uroporphyrinogen decarboxylase	90.31
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	90.31
PLN02424	332	ketopantoate hydroxymethyltransferase	90.28
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	90.26
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	90.22
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	90.17
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	90.16
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	90.14
PRK05481	289	lipoyl synthase; Provisional	90.07
COG0119	409	LeuA Isopropylmalate/homocitrate/citramalate synth	90.01
PLN02417	280	dihydrodipicolinate synthase	90.0
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	89.79
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	89.53
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.46
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	89.37
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	89.33
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	89.32
PRK04147	293	N-acetylneuraminate lyase; Provisional	89.26
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	89.24
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	89.14
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	89.08
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	89.02
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	89.0
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	88.94
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	88.79
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	88.61
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.52
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	88.49
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	88.38
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	88.34
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	88.33
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	88.33
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	88.2
PRK12928	290	lipoyl synthase; Provisional	88.18
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	88.16
PRK04326	330	methionine synthase; Provisional	87.83
PRK13523	337	NADPH dehydrogenase NamA; Provisional	87.79
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	87.75
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	87.69
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	87.65
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	87.65
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	87.65
TIGR01464	338	hemE uroporphyrinogen decarboxylase. This model re	87.58
PRK14024	241	phosphoribosyl isomerase A; Provisional	87.58
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	87.56
PRK08444	353	hypothetical protein; Provisional	87.53
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	87.17
PRK00115	346	hemE uroporphyrinogen decarboxylase; Validated	86.86
PRK12755	353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	86.7
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	86.65
TIGR02631	382	xylA_Arthro xylose isomerase, Arthrobacter type. T	86.63
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	86.6
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	86.5
TIGR00970	564	leuA_yeast 2-isopropylmalate synthase, yeast type.	86.41
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	86.29
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	86.07
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	85.99
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	85.86
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	85.78
cd03309	321	CmuC_like CmuC_like. Proteins similar to the putat	85.75
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	85.44
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	85.26
PRK12581	468	oxaloacetate decarboxylase; Provisional	85.19
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	85.19
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	85.19
PRK03170	292	dihydrodipicolinate synthase; Provisional	84.93
PRK08508	279	biotin synthase; Provisional	84.92
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	84.9
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	84.86
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	84.79
PLN02428	349	lipoic acid synthase	84.76
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	84.41
PRK08227	264	autoinducer 2 aldolase; Validated	84.23
PRK09261	349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	84.2
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	84.1
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	83.98
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	83.93
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	83.9
PRK07360	371	FO synthase subunit 2; Reviewed	83.82
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	83.79
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	83.74
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	83.67
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	83.49
cd07942	284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	83.42
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	83.33
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	83.32
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	83.29
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	83.22
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	82.94
PF01208	343	URO-D: Uroporphyrinogen decarboxylase (URO-D); Int	82.88
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	82.81
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	82.53
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	82.38
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	82.27
PRK01060	281	endonuclease IV; Provisional	82.16
COG1831	285	Predicted metal-dependent hydrolase (urease superf	82.13
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	81.78
PRK08575	326	5-methyltetrahydropteroyltriglutamate--homocystein	81.77
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	81.6
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	81.52
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	81.45
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	81.43
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	81.41
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	81.35
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	81.24
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	81.18
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	81.06
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	81.02
cd03308	378	CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro	80.89
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	80.7
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	80.53
PF14385	164	DUF4416: Domain of unknown function (DUF4416)	80.48
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	80.41
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	80.24

>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.9e-111  Score=856.62  Aligned_cols=436  Identities=64%  Similarity=1.040  Sum_probs=409.1

Q ss_pred             ccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHH
Q 038230           41 SQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE  119 (480)
Q Consensus        41 ~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE  119 (480)
                      .+..++||++|||+||+.+||+.|++.|.+. ++.+...|++|||+|+++.+||.|+|+++.++|.|+|.+||+.||.||
T Consensus       248 tqnk~a~lafGSNIGdrf~~iq~AL~~L~k~~gi~v~~~S~lyEtePmy~kDQp~FlNg~v~~eT~l~P~eLL~~ckkIE  327 (711)
T KOG2544|consen  248 TQNKRAFLAFGSNIGDRFNNIQEALQRLMKEKGIKVTRHSCLYETEPMYVKDQPRFLNGAVRGETKLTPHELLKVCKKIE  327 (711)
T ss_pred             ccceeEEEEeccchhHHHHHHHHHHHHHHHhccEEEeeeccccccCCceecCCchhhcceEEEEeecCHHHHHHHHHHHH
Confidence            3456799999999999999999999888766 889999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCccc--c-----------ccccCC
Q 038230          120 KDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVES--D-----------TKLGGE  186 (480)
Q Consensus       120 ~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p--~-----------~~~~~~  186 (480)
                      ++|||.+..+||||+|||||++||+.++..+.|+|||+++|||.|||.||.||.++.+|+  .           +.++++
T Consensus       328 ~emgR~k~i~~GPR~iDLDIv~yg~~~i~se~L~IPH~rl~ER~FVL~PL~~L~~~~vh~h~lt~~p~~l~qa~dkl~~e  407 (711)
T KOG2544|consen  328 EEMGRVKGIRYGPRPIDLDIVFYGKDIIVSEKLIIPHERLWERTFVLAPLVDLLGDVVHWHSLTAHPGGLFQAWDKLGGE  407 (711)
T ss_pred             HHhhhhhccccCCCccceeEEEecceeeeeccccCCchhhhhchhhHHHHHHhcCccccccccccCchHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999976543  3           234444


Q ss_pred             ccccccC-ccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC
Q 038230          187 SLIGKEG-MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKI  265 (480)
Q Consensus       187 ~~~q~~~-i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v  265 (480)
                      ..+...+ +.|++++++..+++..++.+|||+|+|||||||||+|.+.+.++.+++.|+.+||+||||||+||||++.++
T Consensus       408 ~~l~~~Gv~~R~l~~gd~~~~~~n~t~vMgIlN~TPDSFSDGGkf~~ids~l~~v~smi~dga~IiDiGgqSTrP~a~~i  487 (711)
T KOG2544|consen  408 SLLGRDGVIQRVLPIGDTLWDFSNKTYVMGILNLTPDSFSDGGKFQSIDSALSRVRSMISDGADIIDIGGQSTRPMASRI  487 (711)
T ss_pred             cccccCCceeEEeeccchhhhhcCcceEEEEEecCCcccCCCCccccHHHHHHHHHHHhcCCceEEeecCccCCCCcccc
Confidence            4443344 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCC
Q 038230          266 SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDP  345 (480)
Q Consensus       266 ~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p  345 (480)
                      |.+||++|+.|+|+++++......++||||||+.+|+++|+++||||||||+|+..|++|.+++++.++++++||++|+|
T Consensus       488 S~eEEirR~iP~ikavR~~~e~~~v~iSiDTy~S~VAkeAI~~GadIiNDvsgG~~D~nM~~vvAe~~vpy~imHmRGdp  567 (711)
T KOG2544|consen  488 SSEEEIRRLIPVIKAVRGMTEMPQVLISIDTYNSEVAKEAIKNGADIINDVSGGLLDENMHKVVAESEVPYMIMHMRGDP  567 (711)
T ss_pred             chHHHHHHHhHHHHHHhcccccCceeEEEechhhHHHHHHHhccchheeccccccCchhhHHHHhhcCCCEEEEeccCCh
Confidence            99999999999999999765456799999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc------------ccCCCcE
Q 038230          346 STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL------------AASHAPI  413 (480)
Q Consensus       346 ~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l------------~~~g~Pi  413 (480)
                      .||+...++.|.++++++..++.+++++|...||++|+|++|||+||+|+..||+.++.++            .....|+
T Consensus       568 ~TM~~l~~ye~~di~kdVa~El~eRv~~A~~sGv~rw~ImiDPG~GFaKt~kqnl~ii~~lp~i~e~mak~~i~l~h~pi  647 (711)
T KOG2544|consen  568 CTMQNLENYEYFDICKDVAQELYERVRKAELSGVPRWRIMIDPGIGFAKTWKQNLDIIMHLPKIREEMAKVSINLSHAPI  647 (711)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHcCCcceEEEecCCcccccChhhhhhHhhhchhhHHHhcccceecccCce
Confidence            9999999999999999999999999999999999999999999999999999999999965            2348899


Q ss_pred             EEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          414 LIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       414 l~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      |+|.|||+|+|.++|.+++.+|+++|.|+.+.++..|++|+|||||+++.+++++++||++..
T Consensus       648 L~GPSRK~F~G~itgd~~akdRd~aT~A~Vta~Il~Ga~ivRVHdvk~~ska~kladAi~r~~  710 (711)
T KOG2544|consen  648 LLGPSRKRFLGDITGDPEAKDRDAATVACVTAGILFGANIVRVHDVKNNSKAAKLADAIYRGL  710 (711)
T ss_pred             eeCcccccccccccCCCChhhhcchhhhhhhhhhccCcceEEEeechhhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999998653

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=100.00  E-value=9.3e-78  Score=598.77  Aligned_cols=272  Identities=38%  Similarity=0.646  Sum_probs=256.0

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      +..+++.++++ +|.||||||+|||||||||+|.+.+.|+++|++|+++|||||||||+|||||+++|+++||++|+.|+
T Consensus         3 ~~~~~~~~~~~-~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pv   81 (282)
T PRK11613          3 LFAQGTTLDLS-HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPV   81 (282)
T ss_pred             eeeCCcccCCC-CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHH
Confidence            34556667774 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      |+.|++.   .++||||||++|+|+++||++|++|||||+|+. +++|++++++|++++|+||++|.|++|+..+  .|+
T Consensus        82 I~~l~~~---~~~~ISIDT~~~~va~~AL~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~--~y~  155 (282)
T PRK11613         82 VEAIAQR---FEVWISVDTSKPEVIRESAKAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAP--KYD  155 (282)
T ss_pred             HHHHHhc---CCCeEEEECCCHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCC--Ccc
Confidence            9999975   389999999999999999999999999999986 7899999999999999999999999998754  578


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                      +++.++..+|+++++.|.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||.++|.+ +++
T Consensus       156 dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~SRKsfig~~~~~~-~~~  234 (282)
T PRK11613        156 DVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSE  234 (282)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEecccHHHHhhcCCC-hhh
Confidence            9999999999999999999999999999999999999999999999998   568999999999999999999985 789


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhhh
Q 038230          435 RDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK  477 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~~  477 (480)
                      |+++|++++++|+.+||+|+|||||+++++|+++++++++.+.
T Consensus       235 r~~~T~a~~~~a~~~ga~iiRvHdV~~~~~a~~~~~~~~~~~~  277 (282)
T PRK11613        235 RLSGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAKE  277 (282)
T ss_pred             hhHHHHHHHHHHHHCCCCEEEcCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999976543

>PRK13753 dihydropteroate synthase; Provisional

Probab=100.00  E-value=2e-76  Score=586.39  Aligned_cols=259  Identities=31%  Similarity=0.483  Sum_probs=241.8

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      +.||||||+|||||||||+|++.+.|+++|++|+++|||||||||+||||++++||++||++|+.|+|+.+++.    ++
T Consensus         2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~----~~   77 (279)
T PRK13753          2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ----MH   77 (279)
T ss_pred             ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC----CC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999975    68


Q ss_pred             eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                      ||||||++|+|+++||++||+|||||+|++ +++|+++++++++++|+||++|.|.++.......|++++.++..||+++
T Consensus        78 ~ISIDT~~~~va~~al~aGadiINDVsg~~-d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~  156 (279)
T PRK13753         78 RVSIDSFQPETQRYALKRGVGYLNDIQGFP-DPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR  156 (279)
T ss_pred             cEEEECCCHHHHHHHHHcCCCEEEeCCCCC-chHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999987 8999999999999999999987654332222345789999999999999


Q ss_pred             HHHHHHCCCCCCCEEEecCCCC--ccChhHHHHHHHhc---c-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230          371 VRDAELSGIPAWRIIIDPGLGF--SKKAEHNLDILLGL---A-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASIT  444 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf--~k~~~~~~~~lr~l---~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~  444 (480)
                      ++.|.++||++++||+|||+||  +|+.+||+++|+++   + .+|+|+|+|+|||||||+++|.+ +++|+++|+++++
T Consensus       157 i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~~~-~~~R~~~T~a~~~  235 (279)
T PRK13753        157 VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLP-VKDLGPASLAAEL  235 (279)
T ss_pred             HHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcCCC-hhhhhHhHHHHHH
Confidence            9999999999999999999999  56999999999997   4 48999999999999999999975 6899999999999


Q ss_pred             HHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          445 AGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       445 ~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      +|+.+||+|+|||||+++++|+++++++++.
T Consensus       236 ~a~~~Ga~ivRvHdV~~~~~a~~~~~~~~~~  266 (279)
T PRK13753        236 HAIGNGADYVRTHAPGDLRSAITFSETLAKF  266 (279)
T ss_pred             HHHHcCCCEEEeCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999753

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=100.00  E-value=2.2e-72  Score=556.23  Aligned_cols=254  Identities=50%  Similarity=0.775  Sum_probs=242.2

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      |.||||||+|||||||||++++.+.++++|++|+++||||||||++||||++.++++++|++|+.|+|+.|++.   .++
T Consensus         1 ~~imgIlN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~---~~~   77 (257)
T cd00739           1 TQIMGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGE---LDV   77 (257)
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999986   489


Q ss_pred             eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                      ||||||++|+|+++||++|++|||||+|++.+++|++++++||+++|+||++|.|.+|+..  ..|+++++++..+|+++
T Consensus        78 plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~--~~~~~~~~~~~~~~~~~  155 (257)
T cd00739          78 LISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQEN--PYYEDVVDEVLSFLEAR  155 (257)
T ss_pred             cEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccC--CCcccHHHHHHHHHHHH
Confidence            9999999999999999999999999999875689999999999999999999999999875  35789999999999999


Q ss_pred             HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230          371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV  447 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~  447 (480)
                      ++.|.++||++++||+|||+||+|+.++++++|+++   +.+++|+++|+|||||||++++.+ +++|+++|++++++|+
T Consensus       156 i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~-~~~r~~~t~~~~~~~~  234 (257)
T cd00739         156 LEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGRE-PKDRDWGTLALSALAA  234 (257)
T ss_pred             HHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCC-ccccchhHHHHHHHHH
Confidence            999999999999999999999999999999999887   456999999999999999999976 6899999999999999


Q ss_pred             HcCCcEEEcCChHHHHHHHHHHH
Q 038230          448 LGGANIVRVHNIRDNLDAVKLCD  470 (480)
Q Consensus       448 ~~Ga~IlRvHdV~e~~~al~~~~  470 (480)
                      ++||+|+|||||+++++++++++
T Consensus       235 ~~Ga~iiRvHdv~~~~~~~~~~~  257 (257)
T cd00739         235 ANGADIVRVHDVKATRDALKVAD  257 (257)
T ss_pred             HcCCCEEEeCCHHHHHHHHHHhC
Confidence            99999999999999999999874

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>TIGR01496 DHPS dihydropteroate synthase

Probab=100.00  E-value=6.8e-70  Score=538.66  Aligned_cols=254  Identities=47%  Similarity=0.781  Sum_probs=242.4

Q ss_pred             EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      +||||||+|||||||||++.++++++++|++|+++|||+||||++||+|++..+++++|++|+.|+|+.+++.   .++|
T Consensus         1 ~imgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~---~~~p   77 (257)
T TIGR01496         1 QIMGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ---PDVP   77 (257)
T ss_pred             CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCCe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999976   4899


Q ss_pred             EEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHH
Q 038230          292 VSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKV  371 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i  371 (480)
                      |||||++|+++++||++|+++|||+++++ ++++++++++||+++|+||++|.|.+|+..+  .|+++++++..+|++++
T Consensus        78 lsiDT~~~~vi~~al~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~--~~~~~~~~~~~~~~~~i  154 (257)
T TIGR01496        78 ISVDTYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENP--HYEDVVEEVLRFLEARA  154 (257)
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcccccCC--CcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999987 8999999999999999999999999997753  47899999999999999


Q ss_pred             HHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHH
Q 038230          372 RDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVL  448 (480)
Q Consensus       372 ~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~  448 (480)
                      ++|.++||+++|||||||+||+|+.++++++|+++   +.+++|+++|+|||||||+++|++ +++|+++|++++++|++
T Consensus       155 ~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~-~~~r~~~t~~~~~~a~~  233 (257)
T TIGR01496       155 EELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTP-PEERLEGTLAASAYAVQ  233 (257)
T ss_pred             HHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCC-hhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987   457999999999999999999987 68999999999999999


Q ss_pred             cCCcEEEcCChHHHHHHHHHHHHH
Q 038230          449 GGANIVRVHNIRDNLDAVKLCDSM  472 (480)
Q Consensus       449 ~Ga~IlRvHdV~e~~~al~~~~ai  472 (480)
                      +||+|+|||||+++++++++++++
T Consensus       234 ~Ga~iiR~Hdv~~~~~~~~~~~~~  257 (257)
T TIGR01496       234 KGADIVRVHDVKETRDALKVLEAL  257 (257)
T ss_pred             cCCCEEEeCCHHHHHHHHHHHHhC
Confidence            999999999999999999998763

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd00423 Pterin_binding Pterin binding enzymes

Probab=100.00  E-value=6.6e-65  Score=503.82  Aligned_cols=253  Identities=49%  Similarity=0.755  Sum_probs=240.0

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      +.||||||+|||||||||++.+.+.++++|++|+++||||||||++||||++.++|+++|++|+.|+|+.+++.   .++
T Consensus         1 ~~imGilN~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~---~~~   77 (258)
T cd00423           1 TLIMGILNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGE---PDV   77 (258)
T ss_pred             CeEEEEecCCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc---CCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999976   489


Q ss_pred             eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                      ||||||++|+|+++||++|++|||||++++.+++|++++++|+|++|+||++|.|.+|+..  ..|+++++++.++|+++
T Consensus        78 piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  155 (258)
T cd00423          78 PISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNN--PYYADVVDEVVEFLEER  155 (258)
T ss_pred             eEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccC--CCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999875689999999999999999999999999874  45789999999999999


Q ss_pred             HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230          371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAG  446 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a  446 (480)
                      +++|.++||++++||+|||+||+|+..+++++++++   +.+ |+|+++|+|||||++.+++.+ +++|..+|.+++++|
T Consensus       156 i~~~~~~Gi~~~~IilDPg~g~~k~~~~~~~~l~~i~~~~~~~g~Pil~G~Snksf~~~~~~~~-~~~R~~~t~a~~~~a  234 (258)
T cd00423         156 VEAATEAGIPPEDIILDPGIGFGKTEEHNLELLRRLDAFRELPGLPLLLGVSRKSFLGDLLSVG-PKDRLAGTAAFLAAA  234 (258)
T ss_pred             HHHHHHcCCCHHHEEEeCCCCccCCHHHHHHHHHHHHHHHhcCCCcEEEEeccchhhcccCCCC-hHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999987   455 999999999999999998864 678999999999999


Q ss_pred             HHcCCcEEEcCChHHHHHHHHHH
Q 038230          447 VLGGANIVRVHNIRDNLDAVKLC  469 (480)
Q Consensus       447 ~~~Ga~IlRvHdV~e~~~al~~~  469 (480)
                      +.+|++++|||||++++++++++
T Consensus       235 ~~~G~~~~rvh~v~~~~~a~~~~  257 (258)
T cd00423         235 ILNGADIVRVHDVKELRDAIKVA  257 (258)
T ss_pred             HHcCCCEEEECCCHHHHHHHHhh
Confidence            99999999999999999999986

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]

Probab=100.00  E-value=9.2e-60  Score=469.41  Aligned_cols=261  Identities=44%  Similarity=0.642  Sum_probs=244.3

Q ss_pred             CCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 038230          207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE  286 (480)
Q Consensus       207 ~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~  286 (480)
                      ++.++.||||||+|||||||||+|.+.+.|+.+|.+++++||++||||++||||++..+|.++|+.|+.|+|+.+++.  
T Consensus         4 ~~~~~~imgIlNvtpdSfsDgg~~~~~~~a~~~a~~~~~~Ga~iIdiGgeStrpg~~~vs~~~E~~Rv~Pvl~~i~~~--   81 (274)
T COG0294           4 LSLDPVIMGILNVTPDSFSDGGRFLSLDDALKHADKMIAEGADIIDIGGESTRPGAEFVSVEEELERVDPVLEAVRSP--   81 (274)
T ss_pred             CCCCcceEEEEeCCCCccCCCcccccHHHHHHHHHHHHhCCCcEEEeCCccCCCCCCccChHHHHHHHHHHHHHhhcc--
Confidence            334589999999999999999999999999999999999999999999999999999999999999999999999983  


Q ss_pred             CCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHH-hcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          287 MEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       287 ~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~-~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                      ..++++|+||++++|++.|+++|+++|||++|...+++++..++ ++++++|+||++|.|.+|+..      +++.++..
T Consensus        82 ~~~v~isvdt~r~~va~~a~~aG~~~inDv~g~~~~p~~la~va~e~~~~i~lmh~~~~~~~~~~~------d~~~~~~~  155 (274)
T COG0294          82 ESDVAISVDTSRAEVAPLALGAGADEINDVDGGGIDPALLAAVAAELGAPILLMHEQGVPETMSIN------DLVAAVDM  155 (274)
T ss_pred             CCceeEeccccchHHHHHHHHcccceeeecccCCCCHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc------hHHHHHHH
Confidence            15899999999999999999999999999999987876666666 999999999999999988752      78999999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHH
Q 038230          366 ELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIAS  442 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~  442 (480)
                      +|.++++.+..+||.+++||+|||+||+|+..||+++++++   ..+|+|+|+|+|||||++++++. ++.+|+++|.++
T Consensus       156 ~l~~~~~~~~~~gv~~~~iilDpg~gf~k~~~~n~~ll~~~~~~~~~g~piLvg~srK~~ig~~~~~-~~~~r~~gt~a~  234 (274)
T COG0294         156 FLLARIEEALAAGVGRELIILDPGFGFGKTPEHNLELLARLSEFLELGFPILVGHSRKSFIGAILGR-DPAERLEGTLAT  234 (274)
T ss_pred             HHHHHHHHHhhcCCChhhEEecCCcCCCcccchhHHHHHhHHHhhcCCCcEEEecCCceehhhhcCC-ChhhhhhhhHHH
Confidence            99999999999999999999999999999999999999998   35799999999999999999994 578999999999


Q ss_pred             HHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          443 ITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       443 ~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      ++++..+|++++|||||++++++++++.+++..+
T Consensus       235 ~~~~~~~g~~ivrvHdv~~~~e~~k~~~Al~~~~  268 (274)
T COG0294         235 ELLAAALGADIVRVHDVYEGRELLKAEIALKLGK  268 (274)
T ss_pred             HHHHHHcCCCEEEEcchHhhHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999997654

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=100.00  E-value=1.2e-52  Score=404.31  Aligned_cols=204  Identities=46%  Similarity=0.730  Sum_probs=188.6

Q ss_pred             EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCcCCCCeEEE
Q 038230          216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT-MPEMEGKLVSV  294 (480)
Q Consensus       216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~-~~~~~~~pISI  294 (480)
                      |||+|||||||||++.+.++++++|++|+++||||||||++||||++.++++++|++|+.|+|+.+++ .   .++||||
T Consensus         1 ilNvt~dSf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSI   77 (210)
T PF00809_consen    1 ILNVTPDSFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSI   77 (210)
T ss_dssp             EEEESCCTTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred             CEEecCCCCcccCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999996 3   4899999


Q ss_pred             eCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh-hHHHHHHHHHHHHHHH
Q 038230          295 DTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD-DVCKQVASELYSKVRD  373 (480)
Q Consensus       295 DT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~-~v~~ev~~~l~~~i~~  373 (480)
                      ||++|+|+++||++|+++|||+++++.+++|++++++|++++|+||++|.|.+|.+..  .|. +++.++.++|.++++.
T Consensus        78 DT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~i~~  155 (210)
T PF00809_consen   78 DTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETA--DYRLDIAEEIIEFLEERIEA  155 (210)
T ss_dssp             EESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSH--HHSHSHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEecccccccccccc--hhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998768999999999999999999998787776542  344 8999999999999999


Q ss_pred             HHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccC-CCcEEEeeccccccc
Q 038230          374 AELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AAS-HAPILIGPSRKRFLG  424 (480)
Q Consensus       374 a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~-g~Pil~G~SrKsfi~  424 (480)
                      |.++||++++||+|||+||+|+..+++++++++   +.+ ++|+++|.|||+|+|
T Consensus       156 l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~srk~~~G  210 (210)
T PF00809_consen  156 LEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSRKSFIG  210 (210)
T ss_dssp             HHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETTGHHHH
T ss_pred             HHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccC
Confidence            999999999999999999999999999999988   445 999999999999986

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]

Probab=100.00  E-value=6.4e-45  Score=332.43  Aligned_cols=138  Identities=41%  Similarity=0.682  Sum_probs=134.4

Q ss_pred             ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHH
Q 038230           43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKD  121 (480)
Q Consensus        43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~  121 (480)
                      ++.||||||||+||+.++++.|++.|+++ ..+|+..|++|+|+|||+.+|++|+|+|+.++|+|+|.+|++.+++||++
T Consensus         1 ~~~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S~~y~t~p~G~~~Q~~FlN~v~~v~T~L~p~eLL~~l~~iE~~   80 (160)
T COG0801           1 MTRVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVSPIYETPPVGYEDQPDFLNAVVEVETTLSPRELLARLQAIERR   80 (160)
T ss_pred             CcEEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEeccceecCCCCCCCCcchheEEEEEeccCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999 46799999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          122 MGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       122 ~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +||.|..||||||||||||+||++++++++|+||||++++|+||+.||+|+.|+++||.
T Consensus        81 ~gR~R~~rwgPRtlDlDIllygd~~~~~~~LtiPHp~~~eR~FVL~PL~ei~p~~~~p~  139 (160)
T COG0801          81 LGRVRSERWGPRTLDLDILLYGDEVIETPRLTLPHPRMLERAFVLIPLAEIAPDLVHPG  139 (160)
T ss_pred             cCccccccCCCcceeeEEEEEcceeccCCCccccCcchhhCchhHHhhhhhCcccccCc
Confidence            99999999999999999999999999999999999999999999999999999999996

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=100.00  E-value=5.2e-42  Score=340.21  Aligned_cols=231  Identities=22%  Similarity=0.263  Sum_probs=195.6

Q ss_pred             EEE-EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          213 VMG-ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       213 imG-IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      +.| =+|.|-=.|..-=.-.+++.++++|++|+++||||||||+++        ++++|++|+.|+|+.+++.   .++|
T Consensus         3 ~IGErin~~~~~~~~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~--------~~~eE~~r~~~~v~~l~~~---~~~p   71 (261)
T PRK07535          3 IIGERINGTRKSIAEAIEAKDAAFIQKLALKQAEAGADYLDVNAGT--------AVEEEPETMEWLVETVQEV---VDVP   71 (261)
T ss_pred             EEEeccchhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCCC--------CchhHHHHHHHHHHHHHHh---CCCC
Confidence            344 355552233332223678999999999999999999999974        2468899999999999976   4899


Q ss_pred             EEEeCCCHHHHHHHHHc--CCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHHHH
Q 038230          292 VSVDTFYSKVASEAVGK--GAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVASE  366 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~--G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~  366 (480)
                      |||||++|+|+++||++  |++|||||++++. +++|++++++||+++|+||+  +|.|+|+++            +.++
T Consensus        72 lsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~------------~~~~  139 (261)
T PRK07535         72 LCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAED------------RLAV  139 (261)
T ss_pred             EEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHH------------HHHH
Confidence            99999999999999998  9999999999753 58999999999999999887  789988754            3588


Q ss_pred             HHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc---c--cCCCcEEEeeccccccccccCCCCcCcccHHHH
Q 038230          367 LYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL---A--ASHAPILIGPSRKRFLGEICNRPSADERDPATI  440 (480)
Q Consensus       367 l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l---~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~  440 (480)
                      +++++++|.++||++++||+|||+| |+++..+++++++.+   +  ++|+|+++|+|||||     |+|   +|...|.
T Consensus       140 l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sf-----glp---~r~~in~  211 (261)
T PRK07535        140 AKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISF-----GLP---NRKLINR  211 (261)
T ss_pred             HHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcc-----CCc---chHHHHH
Confidence            8999999999999999999999999 589888887777766   3  239999999999999     774   6899999


Q ss_pred             HHHHHHHHcCC--cEEEcCChHHHHHHHHHHHHHHhh
Q 038230          441 ASITAGVLGGA--NIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       441 a~~~~a~~~Ga--~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      ++.++|++.|.  .|+.+.| ..++++++.++.+.+.
T Consensus       212 ~fl~~a~~~Gl~~aI~np~~-~~~~~~~~~~~~l~g~  247 (261)
T PRK07535        212 AFLVMAMGAGMDSAILDPLD-RDLMGAIAAAEALLGQ  247 (261)
T ss_pred             HHHHHHHHcCCCEEeeCCCC-HHHHHHHHHHHHHhCC
Confidence            99999999995  5888888 5699999999998654

>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase

Probab=100.00  E-value=6.1e-43  Score=322.60  Aligned_cols=140  Identities=32%  Similarity=0.565  Sum_probs=134.2

Q ss_pred             cccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHH
Q 038230           40 QSQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKI  118 (480)
Q Consensus        40 ~~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~I  118 (480)
                      ...++++|||||||+||+++|+++|++.|++. +..++.+|++|+|+|||+. |++|+|+|+.++|+++|++|++.||.|
T Consensus         4 ~~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~-q~dFlN~vv~~~T~l~p~~Ll~~L~~I   82 (163)
T PRK14092          4 SPASALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQ-GPDFVNAVAALDTTLAPLDLLDLLQAL   82 (163)
T ss_pred             CCcCCEEEEEecCchHhHHHHHHHHHHHHHhCCCCeeEEECCCEEeCCCCCC-CCchhEEEEEEEeCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999986 6678899999999999985 999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          119 EKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       119 E~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      |+++||+|..|||||+||||||+||++++++++|+||||++++|+||+.||+||+|++.||.
T Consensus        83 E~~~GR~r~~k~gpRtiDlDIL~~~~~~~~~~~L~iPHp~~~~R~FVL~PL~ei~p~~~~p~  144 (163)
T PRK14092         83 EQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELAPALRLAQ  144 (163)
T ss_pred             HHHcCCCCCcCCCCceeeeEEeccCCeEecCCCcccCCcchhhChHHHHHHHHhCCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999984

>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional

Probab=100.00  E-value=9.1e-43  Score=320.43  Aligned_cols=137  Identities=37%  Similarity=0.564  Sum_probs=132.6

Q ss_pred             eeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHc
Q 038230           44 QEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDM  122 (480)
Q Consensus        44 ~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~  122 (480)
                      +++|||||||+||+.+|+++|++.|+++ +.+++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|++.||+||+++
T Consensus         2 ~~v~i~lGSN~g~~~~~l~~A~~~L~~~~~~~i~~~S~~y~T~P~g~~~q~~FlN~v~~i~T~l~p~~Ll~~l~~IE~~~   81 (159)
T PRK10239          2 TVAYIAIGSNLASPLEQVNAALKALGDIPESRILAVSSFYRTPPLGPQDQPDYLNAAVALETALAPEELLNHTQRIELQQ   81 (159)
T ss_pred             cEEEEEEeCchhhHHHHHHHHHHHHhcCCCCeEEEECCCEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999987 677899999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          123 GRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       123 GR~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      ||.|. .|||||+||||||+||+.++++++|+||||++++|+||+.||+||.|++.||.
T Consensus        82 GR~r~~~~~gpRtiDlDIL~y~~~~~~~~~L~iPHp~~~~R~FVl~PL~ei~p~~~~p~  140 (159)
T PRK10239         82 GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPD  140 (159)
T ss_pred             CCCCCCcCCCCceEEEEEEecCCeeecCCCcccCCcChhhChHHHHHHHHhCCCCcCCC
Confidence            99996 79999999999999999999999999999999999999999999999999994

>cd00740 MeTr MeTr subgroup of pterin binding enzymes

Probab=100.00  E-value=6.8e-42  Score=337.77  Aligned_cols=219  Identities=17%  Similarity=0.201  Sum_probs=186.0

Q ss_pred             EEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          212 SVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       212 ~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      .+.| =+|.| ++||++++...+++.++++|++|+++||||||||++   |+  .+++++|+.|++++++.+.      +
T Consensus         2 ~~iGerin~~g~~~~~~~~~~~~~d~~~~~A~~~~~~GAdiIDIG~~---~~--~~~~~ee~~r~v~~i~~~~------~   70 (252)
T cd00740           2 LNIGERTNVTGSKKFRELIKAEDYDEALDVARQQVEGGAQILDLNVD---YG--GLDGVSAMKWLLNLLATEP------T   70 (252)
T ss_pred             ceEeeccCccCcHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC---CC--CCCHHHHHHHHHHHHHHhc------C
Confidence            4566 68888 999999999999999999999999999999999985   43  5788999999988875443      7


Q ss_pred             CeEEEeCCCHHHHHHHHHc--CCCEEecCCCCC---CCchHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHH
Q 038230          290 KLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQ---LDPDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQ  362 (480)
Q Consensus       290 ~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~---~d~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~e  362 (480)
                      +||||||++|+|+++||++  |++|||||++++   .+++|++++++|++++|+||+  +|.|.|++++           
T Consensus        71 ~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~-----------  139 (252)
T cd00740          71 VPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKK-----------  139 (252)
T ss_pred             CcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHH-----------
Confidence            8999999999999999998  999999999975   258899999999999999998  6788887542           


Q ss_pred             HHHHHHHHHHHHH-HCCCCCCCEEEecCCCCccC--hhHHHHHHHhc---c-----cCCCcEEEeeccccccccccCCCC
Q 038230          363 VASELYSKVRDAE-LSGIPAWRIIIDPGLGFSKK--AEHNLDILLGL---A-----ASHAPILIGPSRKRFLGEICNRPS  431 (480)
Q Consensus       363 v~~~l~~~i~~a~-~~Gi~~~~IilDPgiGf~k~--~~~~~~~lr~l---~-----~~g~Pil~G~SrKsfi~~v~g~~~  431 (480)
                       .+++++.++.+. +.|+++++||+|||+||+++  .++|+++++++   +     .+|+|+++|+|||||     |+++
T Consensus       140 -~~~~~~~~~~~~~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~SnkSf-----~~~~  213 (252)
T cd00740         140 -VEIAERAYEALTEFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVSNVSF-----GFNP  213 (252)
T ss_pred             -HHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeccccc-----CCCc
Confidence             356667777775 67999999999999999884  57777666665   2     369999999999999     6443


Q ss_pred             cCcccHHHHHHHHHHHHcCC--cEEEcCCh
Q 038230          432 ADERDPATIASITAGVLGGA--NIVRVHNI  459 (480)
Q Consensus       432 ~~~r~~~t~a~~~~a~~~Ga--~IlRvHdV  459 (480)
                       .+|...|.+++++|++.|.  .|+.++|.
T Consensus       214 -~~r~~in~~f~~~a~~~Gl~~ai~np~~~  242 (252)
T cd00740         214 -AAREALNSVFLYEAIKAGLDMAIVNAGKL  242 (252)
T ss_pred             -hhHHHHHHHHHHHHHHcccceeecCcccc
Confidence             4799999999999999995  57777773

This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase

Probab=100.00  E-value=3e-42  Score=306.70  Aligned_cols=127  Identities=48%  Similarity=0.779  Sum_probs=123.3

Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCCC
Q 038230           46 VVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRT  125 (480)
Q Consensus        46 ~~l~LGSN~gd~~~~i~~A~~~L~~~~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~  125 (480)
                      +|||||||+||+++|+++|++.|++.+..++.+|++|+|+|||+.+|++|+|+|+.++|+++|.+|++.||+||+++||+
T Consensus         1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~i~~~S~~y~T~p~g~~~q~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~GR~   80 (127)
T TIGR01498         1 AYIALGSNLGDRLKNLRAALAALAALPVRLLIVSSIYETPPWGFTDQPDFLNAVVEVETTLAPRELLALLQAIEAELGRV   80 (127)
T ss_pred             CEEEEeCCcHhHHHHHHHHHHHHhcCCcceEEEccCEEEcCCCCCCCchhheEEEEEEeCCCHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999988777888999999999999899999999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230          126 NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL  172 (480)
Q Consensus       126 r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el  172 (480)
                      |..||||||||||||+|+++++++++|+||||++++|+||+.||+||
T Consensus        81 r~~~~~pRtlDlDIl~~~~~~~~~~~l~iPHp~~~~R~FVl~PL~ei  127 (127)
T TIGR01498        81 REFRWGPRTLDLDILLYGDEVLDEPDLTVPHPRMLERPFVLLPLAEI  127 (127)
T ss_pred             CCCCCCCceEeEEEEccCCEEecCCCcCcCCcchhhCcHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999985

This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.

>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)

Probab=100.00  E-value=2.3e-41  Score=301.76  Aligned_cols=127  Identities=49%  Similarity=0.791  Sum_probs=122.9

Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCC
Q 038230           46 VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGR  124 (480)
Q Consensus        46 ~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR  124 (480)
                      +|||||||+||+++|+++|++.|++. +..++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|++.||+||+++||
T Consensus         1 ~~i~LGSN~~~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~p~g~~~~~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~GR   80 (128)
T cd00483           1 VYLALGSNLGDRLANLRAALRALAALPGIEILAVSPLYETAPVGFTDQPDFLNAVVELETSLSPLELLDALQAIEQRLGR   80 (128)
T ss_pred             CEEEEeCCcHhHHHHHHHHHHHHHcCCCCCceEECCCEEeCCCCCCCChHHHheEEEEEECCCHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999988 45789999999999999989999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230          125 TNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL  172 (480)
Q Consensus       125 ~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el  172 (480)
                      +|..||+||+||||||+|++.++++++|+||||++++|+||+.||+|+
T Consensus        81 ~r~~~~~~RtiDlDIl~~~~~~~~~~~l~iPHp~~~~R~FVl~PL~ei  128 (128)
T cd00483          81 VRKERWGPRTLDLDILLYGDEVIDTPDLTLPHPRMHERAFVLVPLAEI  128 (128)
T ss_pred             CCcccCCCceeeEEEEccCCEEecCCCcccCCcchhhChHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999985

Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.

>TIGR00284 dihydropteroate synthase-related protein

Probab=100.00  E-value=2.2e-39  Score=344.90  Aligned_cols=229  Identities=17%  Similarity=0.137  Sum_probs=191.8

Q ss_pred             ccccccccCCCC-CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSL-KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP  276 (480)
Q Consensus       198 ~~~~~~~~~~~~-~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~  276 (480)
                      +.+++.+++... +++|+|.++-+|        ++  ++++++|++|+++||||||||++||+|++         +|+.|
T Consensus       138 ~~i~~~~i~~~~p~~~v~aEI~~a~--------~l--~~i~~~A~~~~~~GADIIDIG~~st~p~~---------~~v~~  198 (499)
T TIGR00284       138 FRIGSLKIPLKPPPLRVVAEIPPTV--------AE--DGIEGLAARMERDGADMVALGTGSFDDDP---------DVVKE  198 (499)
T ss_pred             hhccCcCCCCCCCCeEEEEEEcCCc--------ch--HHHHHHHHHHHHCCCCEEEECCCcCCCcH---------HHHHH
Confidence            344555665544 689999999999        34  78999999999999999999999999853         37999


Q ss_pred             HHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccch
Q 038230          277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY  356 (480)
Q Consensus       277 vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~  356 (480)
                      +|+.+++.   .++||||||++|+++++||++|++|||||++++ .++|++++++||+++|+||++..+           
T Consensus       199 ~V~~l~~~---~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~-~d~~~~l~a~~g~~vVlm~~~~~~-----------  263 (499)
T TIGR00284       199 KVKTALDA---LDSPVIADTPTLDELYEALKAGASGVIMPDVEN-AVELASEKKLPEDAFVVVPGNQPT-----------  263 (499)
T ss_pred             HHHHHHhh---CCCcEEEeCCCHHHHHHHHHcCCCEEEECCccc-hhHHHHHHHHcCCeEEEEcCCCCc-----------
Confidence            99999976   489999999999999999999999999999986 579999999999999999974111           


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccC-hhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCc
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKK-AEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~-~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                            .+++|.+++++|.++|++  +||+|||+||... ...+++.++.+ +.+++|+|+|+||      ++++.+ .|
T Consensus       264 ------~~~~l~~~ie~a~~~Gi~--~IIlDPglg~~~~~l~~sL~~l~~~r~~~~~Pil~GvSN------vtel~d-aD  328 (499)
T TIGR00284       264 ------NYEELAKAVKKLRTSGYS--KVAADPSLSPPLLGLLESIIRFRRASRLLNVPLVFGAAN------VTELVD-AD  328 (499)
T ss_pred             ------hHHHHHHHHHHHHHCCCC--cEEEeCCCCcchHHHHHHHHHHHHHHHhcCCcEEEeecc------ccCCCc-cc
Confidence                  127899999999999995  8999999998432 23334444443 2468999999985      445553 59


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcCC--------hHHHHHHHHHHHHHHhh
Q 038230          435 RDPATIASITAGVLGGANIVRVHN--------IRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvHd--------V~e~~~al~~~~ai~~~  475 (480)
                      |.++|++++++|+++|++|+||||        |+|+++|++|+.+++..
T Consensus       329 s~g~naal~~~a~e~Ga~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~~  377 (499)
T TIGR00284       329 SHGVNALLAAIALEAGASILYVVEDSYKSYRSTAEAAEAAKMASAARKL  377 (499)
T ss_pred             hhHHHHHHHHHHHHcCCCEEEEcCCcccccccHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999        99999999999998643

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites

Probab=100.00  E-value=2.4e-40  Score=294.89  Aligned_cols=126  Identities=48%  Similarity=0.798  Sum_probs=116.0

Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCCC
Q 038230           47 VIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRT  125 (480)
Q Consensus        47 ~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~  125 (480)
                      |||||||+||+++||++|++.|++. +..++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|+..||+||+++||+
T Consensus         1 ~i~LGSN~~~~~~~l~~A~~~L~~~~~~~~~~~S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~GR~   80 (127)
T PF01288_consen    1 YISLGSNLGDREQNLRQALQALSALPGFGVIRFSSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRLGRD   80 (127)
T ss_dssp             EEEEEESSSSHHHHHHHHHHHHHCSTTEEEEEEEEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHTTSC
T ss_pred             CEEEeCchHhHHHHHHHHHHHHhcCCCCCcEEECCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHhCCC
Confidence            7999999989999999999999999 668899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230          126 NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL  172 (480)
Q Consensus       126 r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el  172 (480)
                      |..||+||+||||||+|++.++++++|+||||++++|+||+.||+||
T Consensus        81 r~~~~~~R~lDlDil~~~~~~~~~~~L~lPHp~~~~R~FVl~Pl~ei  127 (127)
T PF01288_consen   81 RSSKWGPRTLDLDILLYGDEVINEPDLTLPHPRIHERAFVLVPLAEI  127 (127)
T ss_dssp             STSTTSSCSEEEEEEEETTB-EESSSEEES-TTGGG-HHHHHHHHHH
T ss_pred             CcCCCCCceeeeeeEEEeccEEcCCCcEeeccChhhCHHHHHHHHhC
Confidence            98899999999999999999999999999999999999999999986

Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=100.00  E-value=4.3e-35  Score=337.85  Aligned_cols=235  Identities=17%  Similarity=0.190  Sum_probs=194.1

Q ss_pred             CCCCCcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 038230          206 DWSLKTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT  283 (480)
Q Consensus       206 ~~~~~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~  283 (480)
                      +.+.++.++| =+|+| -.+|.+.-+..+.+.|+++|++|+++||+|||||++     ...+++++|++|++++|....+
T Consensus       338 ~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-----~~~vd~~eem~rvv~~i~~~~~  412 (1178)
T TIGR02082       338 AQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-----YGMLDGVAAMKRFLNLLASEPD  412 (1178)
T ss_pred             cCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHHHhccC
Confidence            3345688999 79999 779999988899999999999999999999999986     4568899999999888754211


Q ss_pred             CCcCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccch
Q 038230          284 MPEMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQY  356 (480)
Q Consensus       284 ~~~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~  356 (480)
                      .   +++||||||++++|+++||+.  |++||||||++..+   ++|++++++||+++|+||+  +|+|.|++++     
T Consensus       413 ~---~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r-----  484 (1178)
T TIGR02082       413 I---STVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRK-----  484 (1178)
T ss_pred             C---CCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHH-----
Confidence            2   489999999999999999998  99999999996422   4799999999999999998  6889888764     


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-CCCCCCCEEEecCCC---CccChhHHHHH------HHhc--ccCCCcEEEeeccccccc
Q 038230          357 DDVCKQVASELYSKVRDAEL-SGIPAWRIIIDPGLG---FSKKAEHNLDI------LLGL--AASHAPILIGPSRKRFLG  424 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~-~Gi~~~~IilDPgiG---f~k~~~~~~~~------lr~l--~~~g~Pil~G~SrKsfi~  424 (480)
                             .++++++++.|.+ +||++++||||||+|   |++. +||+..      ++.+  ..+|+|+++|+|||||  
T Consensus       485 -------~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SF--  554 (1178)
T TIGR02082       485 -------IEICKRAYNILTEKVGFPPEDIIFDPNILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSF--  554 (1178)
T ss_pred             -------HHHHHHHHHHHHHHcCCCHHHEEEeCCccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEeccccc--
Confidence                   3688999999987 999999999999998   8876 555444      4444  2469999999999999  


Q ss_pred             cccCCC-CcCcccHHHHHHHHHHHHcCC--cEEEcCChHHHHHHHH
Q 038230          425 EICNRP-SADERDPATIASITAGVLGGA--NIVRVHNIRDNLDAVK  467 (480)
Q Consensus       425 ~v~g~~-~~~~r~~~t~a~~~~a~~~Ga--~IlRvHdV~e~~~al~  467 (480)
                         |+| ++..|...+.++.++|+..|-  .|+.+.+. +++..+.
T Consensus       555 ---glp~~~~~R~~ln~~FL~~a~~~Gld~aIvnp~~~-~~~~~i~  596 (1178)
T TIGR02082       555 ---SFRGNPAAREAMHSVFLYHAIRAGMDMGIVNAGKI-LPYDDID  596 (1178)
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHcCCchhhcChhhh-hHHHhhC
Confidence               665 345799999999999999995  56666663 2444443

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>PRK09490 metH B12-dependent methionine synthase; Provisional

Probab=99.97  E-value=1.8e-31  Score=307.24  Aligned_cols=227  Identities=19%  Similarity=0.200  Sum_probs=188.8

Q ss_pred             CCCcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230          208 SLKTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP  285 (480)
Q Consensus       208 ~~~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~  285 (480)
                      +.++.++| =+|+| -.+|...-+-.+++.++++|++|+++||+|||||+     +...+++++|+.|++++|..+.+. 
T Consensus       356 ~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-----g~~~id~~eem~rvv~~i~~~~~~-  429 (1229)
T PRK09490        356 DSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINM-----DEGMLDSEAAMVRFLNLIASEPDI-  429 (1229)
T ss_pred             CCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHHHhhhcc-
Confidence            44677888 78988 77888887778999999999999999999999995     566799999999999999887664 


Q ss_pred             cCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCCc---hHHHHHHhcCCCEEEEcC--CCCCCccccccccchhh
Q 038230          286 EMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLDP---DMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDD  358 (480)
Q Consensus       286 ~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d~---~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~  358 (480)
                        .++||||||++++|+++||+.  |++||||||++..++   +|++++++||++||+||+  .|+|.|.++        
T Consensus       430 --~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~--------  499 (1229)
T PRK09490        430 --ARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRER--------  499 (1229)
T ss_pred             --CCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHH--------
Confidence              489999999999999999998  999999999975443   699999999999999998  578877554        


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCCCCCEEEecCCCCccCh--------hHHHHHHHhcc--cCCCcEEEeecccccccccc
Q 038230          359 VCKQVASELYSKVRDAEL-SGIPAWRIIIDPGLGFSKKA--------EHNLDILLGLA--ASHAPILIGPSRKRFLGEIC  427 (480)
Q Consensus       359 v~~ev~~~l~~~i~~a~~-~Gi~~~~IilDPgiGf~k~~--------~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~  427 (480)
                          ..+.+++.++.|.+ +||++++|||||++.+..+.        .+.++.+|.++  .+++++++|+||+||  .+.
T Consensus       500 ----r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~~P~~~~~~GlSNiSF--gl~  573 (1229)
T PRK09490        500 ----KIEICKRAYDILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPHAKISGGVSNVSF--SFR  573 (1229)
T ss_pred             ----HHHHHHHHHHHHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHHCCCCcEEEeeccccc--cCC
Confidence                44677888888875 99999999999999886542        33466666663  569999999999999  222


Q ss_pred             CCCCcCcccHHHHHHHHHHHHcCC--cEEEcCC
Q 038230          428 NRPSADERDPATIASITAGVLGGA--NIVRVHN  458 (480)
Q Consensus       428 g~~~~~~r~~~t~a~~~~a~~~Ga--~IlRvHd  458 (480)
                      |.  +..|...+.+|.++|+..|-  .|+.+.+
T Consensus       574 g~--~~~R~~lns~FL~~a~~aGld~aIvnp~~  604 (1229)
T PRK09490        574 GN--NPVREAIHAVFLYHAIKAGMDMGIVNAGQ  604 (1229)
T ss_pred             CC--CchHHHHHHHHHHHHHHcCcchhhcCccc
Confidence            32  23698999999999999995  4555555

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=99.93  E-value=2.4e-24  Score=227.05  Aligned_cols=209  Identities=16%  Similarity=0.154  Sum_probs=171.4

Q ss_pred             CCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHH-----HHcC----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLM-----ISEG----ADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       207 ~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~-----v~~G----AdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      +..+|+|..-+  ++        ..+.+++.++++.+     ...|    ||+||||..|..           .+++.++
T Consensus        88 f~np~~Ia~eI--~D--------~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~d-----------p~~v~~~  146 (450)
T PRK04165         88 FFNPTGIAVDV--SD--------TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGD-----------PEKFAKA  146 (450)
T ss_pred             CCCCCEEEEEE--eC--------CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCC-----------HHHHHHH
Confidence            45678998877  33        34668888898888     7788    999999987753           3478899


Q ss_pred             HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230          278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ  355 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~  355 (480)
                      |+.+++.   .++||||||++|+++++|+++|++.+|+|++.+.+  ++|++++++||+++|++|..             
T Consensus       147 Vk~V~~~---~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d-------------  210 (450)
T PRK04165        147 VKKVAET---TDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN-------------  210 (450)
T ss_pred             HHHHHHh---cCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchh-------------
Confidence            9999975   48999999999999999999999966666665545  88999999999999998841             


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc------ccCCCcEEEeeccccccccccC
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL------AASHAPILIGPSRKRFLGEICN  428 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l------~~~g~Pil~G~SrKsfi~~v~g  428 (480)
                              .+++.++++++.++|+  +|||||||+| |+++. ++++.+|++      +.+|+|+++|.|||+|      
T Consensus       211 --------l~~L~~lv~~~~~~GI--~dIILDPg~ggf~ksl-~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~------  273 (450)
T PRK04165        211 --------LEELKELVEKLQAAGI--KDLVLDPGTENIKETL-DDFVQIRRAAIKKGDRPLGYPIIAFPIEAWM------  273 (450)
T ss_pred             --------HHHHHHHHHHHHHcCC--CcEEECCCCchhhhhH-HHHHHHHhhhhhcccccCCCCEEEcchhhcc------
Confidence                    2678899999999999  6999999997 99998 567888887      3689999999999999      


Q ss_pred             CCCcCcccHHHHHHHHHHHHcCCcEEEcCCh--HHHHHHHHHHHHHHh
Q 038230          429 RPSADERDPATIASITAGVLGGANIVRVHNI--RDNLDAVKLCDSMLT  474 (480)
Q Consensus       429 ~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV--~e~~~al~~~~ai~~  474 (480)
                          .+..+.+.. ++..+.+|++|+..|+.  .++...+.+.+.||.
T Consensus       274 ----~~~~~E~~~-As~~~~kya~i~Vl~~~~~~~~~p~~~~r~niyt  316 (450)
T PRK04165        274 ----SDPMKEAAI-ASTLIAKYADILVLHDIEPWELLPLLTLRQNIYT  316 (450)
T ss_pred             ----cchHHHHHH-HHHHHHhCCcEEEEcCCCHHHHhhHHHHHHhccC
Confidence                133455554 56677799999999984  558888888888874

>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]

Probab=99.86  E-value=4.3e-21  Score=206.69  Aligned_cols=223  Identities=16%  Similarity=0.176  Sum_probs=163.7

Q ss_pred             CCCCcEEEE-EEecCCC-CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230          207 WSLKTSVMG-ILNLTPD-SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM  284 (480)
Q Consensus       207 ~~~~~~imG-IlN~tpD-SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~  284 (480)
                      .+..+.++| =.|+|-= =|.+-=.--+++++++.|++|+++||+|||||..     -...+....+.   .++..+...
T Consensus        25 ~~~~fv~iGERtN~tGskkf~~li~~~~y~~~l~iAr~Qv~~GA~ilDvn~d-----~~~~D~~~~m~---~~l~~~a~~   96 (842)
T COG1410          25 QDNSFVNIGERTNVTGSKKFRRLIIAEDYDEALDVARQQVENGAQILDVNVD-----YVGRDGVADMV---ELLNLLANE   96 (842)
T ss_pred             CCCceeEeecccCccchHHHHHHHHcccHHHHHHHHHHHHhcCCEEEEeecc-----ccccccHHHHH---HHHHHhccC
Confidence            334455666 4666620 0111001257899999999999999999999973     22333444444   455666766


Q ss_pred             CcCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccchh
Q 038230          285 PEMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYD  357 (480)
Q Consensus       285 ~~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~  357 (480)
                         +++||+|||+..+++++||+.  |..++||||.....   ...++++++||+++|+|..  .|...|.+++      
T Consensus        97 ---~~vPlMIDSs~~eviEagLk~~qGk~ivNSis~eege~~f~~~~~LvkkYGaaVVvma~DE~GqA~t~eRK------  167 (842)
T COG1410          97 ---PTVPLMIDSSEWEVIEAGLKCAQGKCIVNSINYEEGEERFEKVAELVKKYGAAVVVMTIDEEGQARTAERK------  167 (842)
T ss_pred             ---CCCceEEehhHHHHHHHHHhhccCceeeeeeeecccHHHHHHHHHHHHHhCCcEEEEeeccccccccHHHH------
Confidence               589999999999999999997  99999999986543   3578999999999999986  4555554432      


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-cc-------ChhHHHHHHHhc--ccCCCcEEEeecccccccccc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SK-------KAEHNLDILLGL--AASHAPILIGPSRKRFLGEIC  427 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k-------~~~~~~~~lr~l--~~~g~Pil~G~SrKsfi~~v~  427 (480)
                            .+.+++.+....+.|+++++||+||++.. +.       ...+.++.+++|  ..+.+.+..|+||.||     
T Consensus       168 ------~eIakR~y~l~~~~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~LP~~~tt~GvSNvSF-----  236 (842)
T COG1410         168 ------FEIAKRAYILTEEVGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKELPHVLTTLGLSNVSF-----  236 (842)
T ss_pred             ------HHHHHHHHHHHHhcCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHhCccceeccccccccC-----
Confidence                  23344445566899999999999998743 22       223457778888  3578999999999999     


Q ss_pred             CCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          428 NRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       428 g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      |.+ +..|...+.++..+|+..|-++-.||-
T Consensus       237 slr-g~~Re~lnavFLy~~i~aGmD~aIVNa  266 (842)
T COG1410         237 GLR-GAVREVLNSVFLYEAISAGLDMAIVNA  266 (842)
T ss_pred             CCC-hHHHHhhhHHHHHHHHhcCCchhhccc
Confidence            665 357999999999999999987766665

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional

Probab=99.79  E-value=4.3e-18  Score=172.51  Aligned_cols=238  Identities=14%  Similarity=0.149  Sum_probs=160.9

Q ss_pred             CCCCcEEEE-EEecCCCCCCCCCccCCHHHH----HHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 038230          207 WSLKTSVMG-ILNLTPDSFSDGGKFQSVEAA----VSQVRLMI-SEGADMIDIGAQSTRPMATKISAEKELERLIPVLEA  280 (480)
Q Consensus       207 ~~~~~~imG-IlN~tpDSFsdgg~~~~~e~a----~~~A~~~v-~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~  280 (480)
                      +..+|.|-= |-..-||.|.+. .-.-++++    .+.|++|. +.|||+|||+..|+.|...    +.|.+.+.++++.
T Consensus        44 ~~n~p~ia~~v~D~~~~~~~~~-i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~----d~~~~e~~~~Vk~  118 (319)
T PRK04452         44 MPNPPVIAMEVFDMPPEDWPEA-VKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGK----DKSPEEAAKTVEE  118 (319)
T ss_pred             CCCCCeEEEEEecCCCcccHHH-HHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccc----cchHHHHHHHHHH
Confidence            334555544 444444454442 11123445    77888998 9999999999989887432    2344445567788


Q ss_pred             HHcCCcCCCCeEEEeCC-----CHHHHHHHHHc--CC-CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230          281 VLTMPEMEGKLVSVDTF-----YSKVASEAVGK--GA-HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       281 l~~~~~~~~~pISIDT~-----~~~v~~aaL~~--G~-~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~  352 (480)
                      +++.   +++|++||+.     +|+|+++||++  |. .|||+++..+ -++|+++|++||++||++...          
T Consensus       119 V~ea---vd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en-~~~i~~lA~~y~~~Vva~s~~----------  184 (319)
T PRK04452        119 VLQA---VDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDN-YKKIAAAAMAYGHAVIAWSPL----------  184 (319)
T ss_pred             HHHh---CCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHH-HHHHHHHHHHhCCeEEEEcHH----------
Confidence            8876   5999999977     89999999997  44 8999999764 489999999999999997632          


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccCh---hHHHHHHHhc-----ccCCCcEEEeeccc---
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKA---EHNLDILLGL-----AASHAPILIGPSRK---  420 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~---~~~~~~lr~l-----~~~g~Pil~G~SrK---  420 (480)
                           |     .+.+.++..++.++|+++++|++||+.+- +...   ..+++.||++     +.+++|++.++++-   
T Consensus       185 -----D-----ln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~  254 (319)
T PRK04452        185 -----D-----INLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWK  254 (319)
T ss_pred             -----H-----HHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhh
Confidence                 1     24667888889999999999999998752 3333   3456666665     46899999888742   


Q ss_pred             ---ccccc----ccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHh
Q 038230          421 ---RFLGE----ICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       421 ---sfi~~----v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~  474 (480)
                         +....    -.|......-.+.+. .++..+.+|++|+-.|....++..-++.+.+..
T Consensus       255 ~kea~~~~~~~~~~g~~~~r~~~~E~~-~a~~~~~~ga~i~vm~hp~s~~~~~~~~~~l~~  314 (319)
T PRK04452        255 AKEAWMPEEEDPEWGPREYRGILWEAV-TALTLLLAGADIFMMRHPESVKTLKEIIDTLMG  314 (319)
T ss_pred             ccccccccccccccccchhccHHHHHH-HHHHHHHhcCcEEEEeCHHHHHHHHHHHHHHhc
Confidence               21100    001110012233444 355667799999999996655555555555554

>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional

Probab=99.78  E-value=2.9e-17  Score=164.82  Aligned_cols=242  Identities=15%  Similarity=0.183  Sum_probs=169.2

Q ss_pred             cccccccccccCC---CCCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHH----cCC-CEEEeCCCCC
Q 038230          195 KRVLPIGNLLWDW---SLKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMIS----EGA-DMIDIGAQST  258 (480)
Q Consensus       195 ~r~~~~~~~~~~~---~~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~----~GA-diIDIG~eSt  258 (480)
                      .+++.+++.+++.   .-++.+.|-+      ||+|-+.        +|.+.|-+..++|.+    -|- -++||=++  
T Consensus         8 q~v~~i~g~kiGGqpGe~ptvL~gsi------FY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~--   79 (308)
T PRK00979          8 QKVYDIGGVKIGGQPGEYPTVLIGSI------FYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGE--   79 (308)
T ss_pred             cEEEEECCEEECCCCCCCCceEEEEe------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecC--
Confidence            5678888888874   2357777744      6664332        566666666666554    243 37777653  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc-------CCCEEecCCCCCCCchHHHHHHh
Q 038230          259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK-------GAHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~-------G~~iINdVsg~~~d~~m~~l~~~  331 (480)
                                 |.+-+.+.|+.+++.   +++|++|||++|+++++||++       |..|+|||++...+ +.++++++
T Consensus        80 -----------~~eam~k~I~~v~~~---~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~-eel~llk~  144 (308)
T PRK00979         80 -----------SPEAMEKYIDFVSEI---TDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEE-EEIEALKE  144 (308)
T ss_pred             -----------hHHHHHHHHHHHHhc---CCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCH-HHHHHHHH
Confidence                       233355566777776   589999999999999999997       48999999997644 66999999


Q ss_pred             cCCC-EEEEcC-CCCCCccccccccchhhHHHHHHHHHHH--------HHHHHHHCCCCCCCEEEecCCCCccChhHHHH
Q 038230          332 LKVP-YVAMHM-RGDPSTMQNEENLQYDDVCKQVASELYS--------KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLD  401 (480)
Q Consensus       332 ~~~~-vVlmh~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~--------~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~  401 (480)
                      ||++ +|++.. .+.| |.++            ..+.+++        .++.|.++||+  +|++||++-...+....++
T Consensus       145 yg~aavIvLa~d~~~p-t~e~------------Rl~i~~~~~~~~~~gll~~a~~~GI~--diliDplVlpvs~~~~tl~  209 (308)
T PRK00979        145 SDIKAAIVLAFDPMDP-SVEG------------RLKMLEEGGKGQDKGMLPLAEEAGIE--RPLVDTAVTPLPGSGAAIR  209 (308)
T ss_pred             hCCceEEEEEcCCCCC-CHHH------------HHHHHHhccccchHHHHHHHHHcCCC--cEEeccCCCcCccHHHHHH
Confidence            9955 666554 4566 5443            4566777        79999999995  9999998866555677788


Q ss_pred             HHHhcc-cCCCcEEEeeccccccccccCCC-CcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230          402 ILLGLA-ASHAPILIGPSRKRFLGEICNRP-SADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       402 ~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~-~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~  474 (480)
                      .++.++ .+|+|+.+|+||.||-=.-+... .++.......++..++...|+|.+.-   -+.+..-.|+.+++.+..
T Consensus       210 aI~~iK~~~G~pt~~GlSNiS~~w~~lk~~~~~~~~~~~d~~~~~~~~~~g~Df~lyGpIe~~~~~~pa~a~~d~~~~  287 (308)
T PRK00979        210 AIFAVKAKFGYPVGCAPHNAPSAWDWLREFKGKEAFAVCDIGANLVARILGADFLLYGPIENAEEAFPAVAMTDIFIA  287 (308)
T ss_pred             HHHHHHHHcCCCeEEEEeCCchHHHHHHHhcccccccccchHHHHHHHHhcCCeEEecccccchhhhHHHHHHHHHHH
Confidence            888774 46999999999999843222210 01112122345567788899998864   445667788888887643

>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit

Probab=99.55  E-value=4.6e-13  Score=137.62  Aligned_cols=234  Identities=14%  Similarity=0.077  Sum_probs=152.0

Q ss_pred             CCCcEEEEEEecC-CCCCCCCCccCCHHHHH----HHHHHHH-HcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 038230          208 SLKTSVMGILNLT-PDSFSDGGKFQSVEAAV----SQVRLMI-SEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV  281 (480)
Q Consensus       208 ~~~~~imGIlN~t-pDSFsdgg~~~~~e~a~----~~A~~~v-~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l  281 (480)
                      ..+|.|-=-+--+ |+.+... .-.-++++.    +.+++.+ +-|||.|-|-..|+.|....-|+++    ...+++.+
T Consensus       109 ~npp~ia~dV~D~~~~~~~~~-i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e----~a~~vk~V  183 (389)
T TIGR00381       109 PNPPVVTFDVFDIPMPGLPKP-IRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSE----AAKVLEDV  183 (389)
T ss_pred             CCCCeEEEEEecCCccccHHH-HHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHH----HHHHHHHH
Confidence            3455554444444 5443331 111123344    6666666 7999999999999999654445433    33345666


Q ss_pred             HcCCcCCCCeEEEe-----CCCHHHHHHHHHc--C-CCEEecCCCC-CCCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230          282 LTMPEMEGKLVSVD-----TFYSKVASEAVGK--G-AHIVNDVSAG-QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       282 ~~~~~~~~~pISID-----T~~~~v~~aaL~~--G-~~iINdVsg~-~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~  352 (480)
                      .+.   +++|+.||     +.+++|+++||+.  | ..+||+++.. + -++|.++|++||+++|++.....        
T Consensus       184 ~~a---v~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~N-y~~ia~lAk~yg~~Vvv~s~~Di--------  251 (389)
T TIGR00381       184 LQA---VDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLD-YEKIANAAKKYGHVVLSWTIMDI--------  251 (389)
T ss_pred             HHh---CCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhh-HHHHHHHHHHhCCeEEEEcCCcH--------
Confidence            554   48999999     4599999999997  7 7999999976 4 48999999999999999874311        


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhH---HHHHHHhc-----ccCCCcEEEeecccccc
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEH---NLDILLGL-----AASHAPILIGPSRKRFL  423 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~---~~~~lr~l-----~~~g~Pil~G~SrKsfi  423 (480)
                                  ..+.+.-.++.++|+++++||+||+.+. +...+.   +++.+|+.     +.+++|+..++.+ .+-
T Consensus       252 ------------n~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~~~-~w~  318 (389)
T TIGR00381       252 ------------NMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGTTN-AWG  318 (389)
T ss_pred             ------------HHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccchh-hhh
Confidence                        2344555567899999999999999854 444444   44555553     4689999998833 331


Q ss_pred             cc-c------cCCCCcCccc--HHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHh
Q 038230          424 GE-I------CNRPSADERD--PATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       424 ~~-v------~g~~~~~~r~--~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~  474 (480)
                      -. .      .|  +.+.|.  |....+ +-.+..|++|+.+.....++..-++.+.+.+
T Consensus       319 ~kEa~~~~~~wG--~~~~Rg~lwE~~ta-~~~~~aG~di~~m~HP~sv~~~k~~~~~l~~  375 (389)
T TIGR00381       319 AREAWMVDSEWG--PREYRGPLWEIITG-LTMMLAGVDLFMMLHPVSVAVLKEIGNTLTG  375 (389)
T ss_pred             heeeccCCCCCC--ChHHhchhhhHHHH-HHHHHcCCcEEEEeCHHHHHHHHHHHHHHhh
Confidence            00 0      01  123343  344443 3345589999998885555554455555543

This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.

>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=99.31  E-value=6.2e-11  Score=119.43  Aligned_cols=216  Identities=20%  Similarity=0.184  Sum_probs=147.0

Q ss_pred             EecCCCCCCCCCccCCHHHHHHHHHHHHHc-----C----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC
Q 038230          217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISE-----G----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM  287 (480)
Q Consensus       217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~-----G----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~  287 (480)
                      .|-|| =|+|=.--++.+++++++.+..+-     |    -|-+-|-..|.-           .++...+++.+.+.   
T Consensus        94 fNpt~-~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgd-----------pekfa~ave~v~~~---  158 (467)
T COG1456          94 FNPTP-MFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGD-----------PEKFAEAVEKVAEA---  158 (467)
T ss_pred             eCCCc-eEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCC-----------HHHHHHHHHHHHhc---
Confidence            45555 455555567888999998776542     2    133444333322           35677788888876   


Q ss_pred             CCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          288 EGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       288 ~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                       +.|+.+-|++|+|+++||+.-.+.-.-+.+.+.+  .++++++.+|+|++|+...+               |     .+
T Consensus       159 -~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~---------------d-----l~  217 (467)
T COG1456         159 -GLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFN---------------D-----LD  217 (467)
T ss_pred             -CCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccC---------------C-----HH
Confidence             7999999999999999999854433333444433  78999999999999995421               1     15


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEecCCCCc-cC---hhHHHHHHHhc------ccCCCcEEEeeccccccccccCCCCcCcc
Q 038230          366 ELYSKVRDAELSGIPAWRIIIDPGLGFS-KK---AEHNLDILLGL------AASHAPILIGPSRKRFLGEICNRPSADER  435 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~IilDPgiGf~-k~---~~~~~~~lr~l------~~~g~Pil~G~SrKsfi~~v~g~~~~~~r  435 (480)
                      .|......+.++||+  +|++|||.-++ +.   ..+++..||+.      +.+++|||.=.=.-+.   +++..+....
T Consensus       218 ~lk~la~~~~~~Gi~--divLdPgT~p~~egl~~T~d~~v~iRr~aIe~~d~~~~yPim~~p~~~~~---~~~dd~V~a~  292 (467)
T COG1456         218 DLKNLAVTYAQAGIK--DIVLDPGTYPGGEGLKDTFDNFVMIRRAAIEGFDKDFAYPIMALPFTAWM---FGEDDPVSAS  292 (467)
T ss_pred             HHHHHHHHHHHcCCc--eEEecCCcccCccchhHHHHHHHHHHHHHhhccCccccceeeecchhhhh---hccCchHHHH
Confidence            567888889999998  99999998774 43   35566677775      3589999853221122   2222112334


Q ss_pred             cHHHHHHHHHHHHcCCcEEEcCC--hHHHHHHHHHHHHHHh
Q 038230          436 DPATIASITAGVLGGANIVRVHN--IRDNLDAVKLCDSMLT  474 (480)
Q Consensus       436 ~~~t~a~~~~a~~~Ga~IlRvHd--V~e~~~al~~~~ai~~  474 (480)
                      .+.+.. ++.++.+.+||+..|.  ..+++..+.+.+.||.
T Consensus       293 ~~Ea~i-As~~~~rYaDilI~~~~e~w~~mPvltlrq~iYT  332 (467)
T COG1456         293 YWEAVI-ASTFMNRYADILILHSLEPWALMPVLTLRQCIYT  332 (467)
T ss_pred             HHHHHH-HHHHHHhhcceEEecccchhhhcchhhhhhhccc
Confidence            444443 5678888999888886  5568999999999884

>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes

Probab=99.12  E-value=7.8e-10  Score=114.62  Aligned_cols=185  Identities=17%  Similarity=0.185  Sum_probs=122.7

Q ss_pred             HHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc---CCCEE
Q 038230          239 QVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK---GAHIV  313 (480)
Q Consensus       239 ~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~---G~~iI  313 (480)
                      .|++-+.+  |||.|-+=..|+.|          .++...+++.+.+.   +++|+.|-+.+++++++|+++   ...+|
T Consensus        59 wak~rVge~~~~D~Ialr~~S~DP----------ae~fa~~vk~V~~a---~~~PLIL~~~D~evl~aale~~~~~kpLL  125 (386)
T PF03599_consen   59 WAKKRVGEFLGADMIALRLESGDP----------AEEFAKAVKKVAEA---VDVPLILCGCDPEVLKAALEACAGKKPLL  125 (386)
T ss_dssp             HHHHCCCEEEE-SEEEEE-GGGST----------HHHHHHHHHHHHHC----SSEEEEESSHHHHHHHHHHHTTTS--EE
T ss_pred             hhhhhhhhhccccEEEEEecCCCh----------HHHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHhCcCCcEE
Confidence            44555554  99999999988887          33455567777776   589999999999999999997   47899


Q ss_pred             ecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-
Q 038230          314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-  392 (480)
Q Consensus       314 NdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-  392 (480)
                      ...+..+ -++|.++|++|++++++...    .+                .+.+.++..++.+.|++  +|++|||.+- 
T Consensus       126 ~aAt~eN-yk~m~~lA~~y~~pl~v~sp----~D----------------ln~lk~Ln~~l~~~Gv~--dIVlDpgt~~l  182 (386)
T PF03599_consen  126 YAATEEN-YKAMAALAKEYGHPLIVSSP----ID----------------LNLLKQLNIKLTELGVK--DIVLDPGTRAL  182 (386)
T ss_dssp             EEEBTTT-HHHHHHHHHHCT-EEEEE-S----SC----------------HHHHHHHHHHHHTTT-G--GEEEE---SST
T ss_pred             eEcCHHH-HHHHHHHHHHcCCeEEEEec----cc----------------HHHHHHHHHHHHhcCcc--cEEecCCcccc
Confidence            9998765 48999999999999998542    11                15567888888999995  9999999765 


Q ss_pred             ccChh---HHHHHHHhc-----ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCCh--HHH
Q 038230          393 SKKAE---HNLDILLGL-----AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNI--RDN  462 (480)
Q Consensus       393 ~k~~~---~~~~~lr~l-----~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV--~e~  462 (480)
                      |...+   ++++.||+.     +.+++|++. ++...+     +.     +  ...+  ...+.+|++|+-.|+.  .++
T Consensus       183 GyGie~t~s~~~rIRraALk~Dr~lgyPiI~-~~~~aw-----~~-----~--e~~~--~~~i~kYa~IiVl~~~~~~~~  247 (386)
T PF03599_consen  183 GYGIEYTYSNMERIRRAALKGDRPLGYPIIT-FPTEAW-----KA-----K--EADA--VAFIAKYASIIVLHDMEPWEL  247 (386)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHT-GGG-S-BEE-CHHHCT-----CC-----H--HHHH--HHHHHTT-SEEEES---HHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhccCcccCCceee-cchhcc-----ch-----h--HHHH--HHHHHhhCcEEEEcCCCHHHH
Confidence            55554   445556664     568999864 432222     11     1  1111  1167899999999984  458


Q ss_pred             HHHHHHHHHHHh
Q 038230          463 LDAVKLCDSMLT  474 (480)
Q Consensus       463 ~~al~~~~ai~~  474 (480)
                      ...+.+.+.||.
T Consensus       248 lpll~lR~niyT  259 (386)
T PF03599_consen  248 LPLLTLRQNIYT  259 (386)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHhhccC
Confidence            888888888874

; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.

>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H

Probab=98.76  E-value=6e-07  Score=89.59  Aligned_cols=248  Identities=18%  Similarity=0.208  Sum_probs=157.7

Q ss_pred             cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHcC-----CCEEEeCCCCC
Q 038230          195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISEG-----ADMIDIGAQST  258 (480)
Q Consensus       195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~G-----AdiIDIG~eSt  258 (480)
                      ++++.+++.+++..   -+|.+.|-+      ||+|-+.        +|.+.|-+..++|.+..     -.++||=++| 
T Consensus         3 Q~V~~i~gvkiGGQPGE~PtvL~GSI------FY~gHkIV~D~~~G~FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s-   75 (296)
T PF02007_consen    3 QKVYDIGGVKIGGQPGEYPTVLIGSI------FYNGHKIVEDEKKGIFDKEAAEALINRQEELSDETGNPCIVDIVAES-   75 (296)
T ss_pred             cEEEEECCEEECCCCCCCCceEEEee------eecCceeeeccCCCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence            34667777777642   347777744      6665433        57777777777776643     3678886654 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230          259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~  331 (480)
                               .|.+.+.+..+   .+.   ++.|+-|||..+++-.+|+++    |   ..|-|||+... +++=++.+++
T Consensus        76 ---------~EA~~kYidFv---~~i---~d~PfliDS~~~~~R~~a~~yv~E~Gl~dR~IYNSIn~~~-~~~EieaLke  139 (296)
T PF02007_consen   76 ---------PEAMEKYIDFV---AEI---TDSPFLIDSSSPEVRIAAAKYVTEIGLADRAIYNSINMSI-EDEEIEALKE  139 (296)
T ss_pred             ---------HHHHHHHHHHH---hhc---CCCCeEecCCCHHHHHHHHHHHhhhchhhhhhhhcCCCCC-CHHHHHHHHh
Confidence                     36677776666   443   478999999999999999986    4   66999999876 4566788899


Q ss_pred             cCC--CEEEEcCCCCCCccccccccchhhHHHHHHHHH-HHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230          332 LKV--PYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL-YSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-  406 (480)
Q Consensus       332 ~~~--~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l-~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-  406 (480)
                      +++  .+|+-.+..+|.. +.+     -+++++...-. +-.++.|+++||+  ++++||+.-- +...-..++.+..+ 
T Consensus       140 s~i~aaIvLaFn~~d~s~-~gr-----~~~le~~~~~~~kgll~~a~e~GI~--~~LvD~~v~plgsg~g~s~r~~~~vK  211 (296)
T PF02007_consen  140 SDIDAAIVLAFNPMDPSV-EGR-----IEMLENGGGGQDKGLLDIAEECGIE--NPLVDTAVTPLGSGAGISIRAIFAVK  211 (296)
T ss_pred             cCCCEEEEEecCCCCCCh-hhh-----HHHHhccCcccccchHHHHHHcCCc--ceeecccccCCcccchHHHHHHHHHH
Confidence            874  5666565555532 221     12222221111 2357889999998  9999998754 22233334443333 


Q ss_pred             ccCCCcEEEeeccccc----cccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230          407 AASHAPILIGPSRKRF----LGEICNRPSADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       407 ~~~g~Pil~G~SrKsf----i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~  474 (480)
                      ..+|+|+=+|.+|-..    +.+.-+. ..+......+.+..++...|+|++.-   -+.+..-.|+.|++.++.
T Consensus       212 ~~~G~P~G~a~hN~~s~W~wlr~~~k~-~~~~~~~~di~~~~~~~~~g~DFilYGPIena~~vfpA~a~~Di~~a  285 (296)
T PF02007_consen  212 AKFGYPVGCAIHNAPSAWKWLREYKKK-EGEKFAVCDIGANLMQIILGADFILYGPIENAPYVFPAVAMADIMIA  285 (296)
T ss_pred             HHhCCCcccccccchhHHHHHHHhccc-ccccccccchHHHHHHHHhcCCeEEecccccchhhhHHHHHHHHHHH
Confidence            3589999999998522    2222111 11111122345567788899998864   456668888888888753

The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process

>PRK14047 putative methyltransferase; Provisional

Probab=98.47  E-value=1.6e-05  Score=79.68  Aligned_cols=247  Identities=17%  Similarity=0.174  Sum_probs=154.3

Q ss_pred             cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHc-----CCCEEEeCCCCC
Q 038230          195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISE-----GADMIDIGAQST  258 (480)
Q Consensus       195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~-----GAdiIDIG~eSt  258 (480)
                      ++++.+++.+++..   -++.+.|-+      ||+|-..        +|.+.|-+...+|.+.     --.++||=++| 
T Consensus         8 Q~v~~iggvkiGGqPGE~PtvL~GsI------FY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~TGnp~~~~I~g~t-   80 (310)
T PRK14047          8 QEIFNIAGVKFGGQPGELPTVLAGTI------FYNRHKIVTDEDKGLFDREAAEKLVNLQEEMSDETGNPCVVHIFGTT-   80 (310)
T ss_pred             cEEEEECCEEECCcCCCCcceEEEEE------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence            45678888877642   346677744      5554322        5666666666666553     23577876654 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230          259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~  331 (480)
                               +|.+.+.+..+   .+.   ++.|+-|||+.+++=.+|+++    |   ..|-|||+... +++=++.+++
T Consensus        81 ---------~EA~~kYidfv---~ei---~d~PfliDS~~~~~R~aa~~yv~E~GladR~IYNSIn~s~-~~~EieaL~~  144 (310)
T PRK14047         81 ---------PEAITNYIDFF---SEV---TDSPFLIDSPEGEVRAAAAEYVTEIGLADRAIYNSINMSI-HESEIEALKQ  144 (310)
T ss_pred             ---------HHHHHHHHHHH---hhc---cCCCeEecCCCHHHHHHHHhhhhhhchhHHHHHhhcCccC-CHHHHHHHHh
Confidence                     35566665555   444   478999999999999999986    4   66999999876 5666788888


Q ss_pred             cC--CCEEEEcCCCCCCccccccccchhhHHHHHHHHH-HHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230          332 LK--VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL-YSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-  406 (480)
Q Consensus       332 ~~--~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l-~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-  406 (480)
                      ++  +.+|+-.+.++| +++.+     -+++++.-.-. +-.++.|+++||+  ++++||+.-. |.+.-..++.+-.. 
T Consensus       145 sdi~aaIiLaFn~~d~-sv~gr-----~~~le~gg~~~~~gll~~ae~~GI~--~~liD~avtplg~g~g~a~r~~~avK  216 (310)
T PRK14047        145 SDIDSSIVLGFNAMDS-SLKGR-----MEMLETGGGLLEKGLLEIADDCGIT--NILIDPSITPMGNGAGIALRMTIAAK  216 (310)
T ss_pred             cCCCeEEEEecCCCCC-CHHHH-----HHHHHhcCccccccHHHHHHHcCCC--ceeecccccCCCCCccHHHHHHHHHH
Confidence            87  456665555555 22222     11211110000 1368899999998  9999997643 34443434443333 


Q ss_pred             ccCCCcEEEeecccc----ccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHH
Q 038230          407 AASHAPILIGPSRKR----FLGEICNRPSADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSML  473 (480)
Q Consensus       407 ~~~g~Pil~G~SrKs----fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~  473 (480)
                      ..+|+|+=.|.+|-.    |+.+. .+..+.--......+..++...|+|.+.-   .+.+..-.|+.|++.+.
T Consensus       217 ~~~G~PvG~g~hN~~saW~wlk~~-~k~~~~~~~~~digan~~~~~~g~DFvlYGPIEna~~~fpA~am~D~~i  289 (310)
T PRK14047        217 AKWGLPVGSGIHNAPSAWNWLKDK-KEKDPLVYKMCDIGSTCMQQAAGGDFVLYGPIENAPYVFPMAAMSDIMI  289 (310)
T ss_pred             HHhCCCcCcccccCchHhHHHHHh-cccCCcceecccHHHHHHHHHhcCCeEEeccccccchhhHHHHHHHHHH
Confidence            257999999998863    33321 10011111112245566778899998864   45566788888888864

>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H

Probab=98.37  E-value=3.4e-05  Score=77.57  Aligned_cols=248  Identities=17%  Similarity=0.156  Sum_probs=153.0

Q ss_pred             cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHc-----CCCEEEeCCCCC
Q 038230          195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISE-----GADMIDIGAQST  258 (480)
Q Consensus       195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~-----GAdiIDIG~eSt  258 (480)
                      +.++.+++.+++..   -++.+.|-+      ||++-+.        +|.+.|-+...+|.+-     ---++||=++| 
T Consensus         8 Q~v~~iggvkiGGqPGE~PtvL~GSI------FY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~tGnp~~~qI~~~t-   80 (314)
T TIGR01114         8 QEVFEIAGVKIGGQPGEYPTVLAGTI------FYARHKIVEDEDKGIFDKAAAETLIKTQEELSDATGNPYVVQIFGET-   80 (314)
T ss_pred             eEEEEECCEEECCcCCCCCceEEEEE------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence            56678888877642   346677744      5554322        5666676666666553     23578887654 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230          259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~  331 (480)
                               .|.+.+.+..+   .+.   ++.|+-|||+.+++=-+|+++    |   ..|-|||+... +++=++.+++
T Consensus        81 ---------~EA~~kYidfv---~~i---~d~PfliDS~~~~~r~aa~ky~~E~GladR~IYNSIn~s~-~~eEieaL~e  144 (314)
T TIGR01114        81 ---------PEAIVRYIDWV---ADI---TDAPFLIDSTSGEARAAAAKYATEVGLADRAIYNSINASI-EEEEIQVLKE  144 (314)
T ss_pred             ---------HHHHHHHHHHH---hcc---cCCCeEecCCcHHHHHHHhhhhhhhchHHHHHHhhcCccC-CHHHHHHHHh
Confidence                     35576665555   444   478999999999999999986    4   56999999876 5666788888


Q ss_pred             cC--CCEEEEcCCCCCCccccccccchhhHHHHHHH-HHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230          332 LK--VPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS-ELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-  406 (480)
Q Consensus       332 ~~--~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~-~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-  406 (480)
                      ++  +++|+-.+.++|. .+.+     -+++++.-. .-+-.+..|+++||+  +.++||+.-. +.+.-..++.+-.. 
T Consensus       145 sdi~aaIiLaFnp~dps-v~gr-----~~~l~~gg~~~~~gll~~ae~~GI~--~pliD~avtplg~g~g~a~r~~~a~K  216 (314)
T TIGR01114       145 SDLSAAIVLAFNPMDPT-VEGK-----IDILEVGGGTSDKGMLEIAEECGIK--YPLIDVAVTPLGAGAGAAVRSSFAVK  216 (314)
T ss_pred             cCCCeEEEEecCCCCCC-HHHH-----HHHHHhcCccccccHHHHHHHcCCC--ceeecccccCCCCCccHHHHHHHHHH
Confidence            87  4566655555552 2221     111111100 002368899999998  9999997643 34333333222222 


Q ss_pred             ccCCCcEEEeecccc----cccccc-CCCCcCcc-cHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHH
Q 038230          407 AASHAPILIGPSRKR----FLGEIC-NRPSADER-DPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSML  473 (480)
Q Consensus       407 ~~~g~Pil~G~SrKs----fi~~v~-g~~~~~~r-~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~  473 (480)
                      ..+|+|+=.|.+|-.    |+.+.- +.++..+. ......+..++...|+|.+.-   -+.+..-.|+.|++.+.
T Consensus       217 ~k~G~PvG~g~hN~~saW~wlk~~~k~~~~~~~~~~~~digan~~~~~~G~DfvlYGPIen~~~~fpAvAm~D~~i  292 (314)
T TIGR01114       217 AKFGLPVGGGIHNVPSAWDWLREFKKTLKEAGAIHMVCDVGSNLVAQMAGGDYLLYGPIENANMIFPAVAMVDIMI  292 (314)
T ss_pred             HHhCCCcCcccccCchHHHHHHHhhhccccccceeccccHHHHHHHHHhcCCEEEecccccchhhhHHHHHHHHHH
Confidence            258999999998863    333321 10000111 012345566778899998864   45666788888888864

coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=97.98  E-value=0.00012  Score=73.09  Aligned_cols=194  Identities=20%  Similarity=0.239  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-----CCHHHHHHHHHc
Q 038230          235 AAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-----FYSKVASEAVGK  308 (480)
Q Consensus       235 ~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-----~~~~v~~aaL~~  308 (480)
                      +-.+.|++.++ -|||++-|-.-||.|.-...+++|-.+.+..++   |..    ++||.|--     -+|+|+++|.+.
T Consensus       151 dP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvL---qAV----dvPiiiGGSGnpeKDpeVlekaAEv  223 (403)
T COG2069         151 DPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVL---QAV----DVPIIIGGSGNPEKDPEVLEKAAEV  223 (403)
T ss_pred             CHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHH---Hhc----CcCEEecCCCCCccCHHHHHHHHHh
Confidence            34567888776 799999999999999888888888787776665   332    78999854     479999999886


Q ss_pred             --C-CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          309 --G-AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       309 --G-~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                        | ..++-|.+-...-+++++.|++|+-.|.--. .=+ .+||                  +++=+++.+.|+++++|+
T Consensus       224 aEGeRclLaSanldlDy~~ia~AA~ky~H~VLswt-~~D-~N~q------------------k~LNrkllk~gl~r~~IV  283 (403)
T COG2069         224 AEGERCLLASANLDLDYERIAEAALKYDHVVLSWT-QMD-VNMQ------------------KTLNRKLLKRGLPRDRIV  283 (403)
T ss_pred             hcCceEEeeccccccCHHHHHHHHHhcCceEEEee-ccC-hHHH------------------HHHHHHHHHccCChhhee
Confidence              5 6677777754322889999999996555322 101 1111                  233456778999999999


Q ss_pred             Eec---CCCCccC-hhHHHHHHHh--c---ccCCCcEEEeecc-----ccccccc-cCCCCcCcc--cHHHHHHHHHHHH
Q 038230          386 IDP---GLGFSKK-AEHNLDILLG--L---AASHAPILIGPSR-----KRFLGEI-CNRPSADER--DPATIASITAGVL  448 (480)
Q Consensus       386 lDP---giGf~k~-~~~~~~~lr~--l---~~~g~Pil~G~Sr-----Ksfi~~v-~g~~~~~~r--~~~t~a~~~~a~~  448 (480)
                      .||   .+|+|-. ...|++-+|-  |   ..+.+|+--|..|     -+|..+- -| | -+=|  +|......+ .+.
T Consensus       284 MDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAwgaREaWM~~~~WG-P-reyRgPlWEivTglT-~~l  360 (403)
T COG2069         284 MDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAWGAREAWMVDSEWG-P-REYRGPLWEIVTGLT-LAL  360 (403)
T ss_pred             eccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchhhhhHHhhcCCCCC-c-hhccccHHHHHhhHH-HHH
Confidence            999   2444322 1234444443  2   3578898888653     3332210 01 1 0112  344443333 344


Q ss_pred             cCCcEEEcCC
Q 038230          449 GGANIVRVHN  458 (480)
Q Consensus       449 ~Ga~IlRvHd  458 (480)
                      .|+|++-...
T Consensus       361 ~GvDlfMM~h  370 (403)
T COG2069         361 AGVDLFMMMH  370 (403)
T ss_pred             hccchhhhhC
Confidence            8999766554

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=97.97  E-value=0.00041  Score=68.62  Aligned_cols=156  Identities=12%  Similarity=0.239  Sum_probs=101.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH--------------HHHHHHHHHHcCCcCCCCeEEEe
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE--------------RLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~--------------rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      |-+.+...+.++.+.++|||+|.+|...+.|-++    -..++              .....++.+++.   .++|+.+=
T Consensus        10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~D----G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~---~~~pv~lm   82 (242)
T cd04724          10 DPDLETTLEILKALVEAGADIIELGIPFSDPVAD----GPVIQAASERALANGVTLKDVLELVKEIRKK---NTIPIVLM   82 (242)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc---CCCCEEEE
Confidence            4577889999999999999999999866555443    23333              566788888865   36787776


Q ss_pred             CC-C-------HHHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          296 TF-Y-------SKVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       296 T~-~-------~~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                      || +       .+-++.+.++|++  ++.|...+ ...++++.++++|...+++-...+|   .                
T Consensus        83 ~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~e-e~~~~~~~~~~~g~~~i~~i~P~T~---~----------------  142 (242)
T cd04724          83 GYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPE-EAEEFREAAKEYGLDLIFLVAPTTP---D----------------  142 (242)
T ss_pred             EecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHH-HHHHHHHHHHHcCCcEEEEeCCCCC---H----------------
Confidence            66 6       4567778888987  55666532 2357899999999988876543222   1                


Q ss_pred             HHHHHHHHHHHCCCCCCCEEE---ecCCCCccC-hhHHHHHHHhcc-cCCCcEEEee
Q 038230          366 ELYSKVRDAELSGIPAWRIII---DPGLGFSKK-AEHNLDILLGLA-ASHAPILIGP  417 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k~-~~~~~~~lr~l~-~~g~Pil~G~  417 (480)
                         ++++...+....  -|++   .|++|-.+. .....+.+++++ ..++|+++|-
T Consensus       143 ---~~i~~i~~~~~~--~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vgg  194 (242)
T cd04724         143 ---ERIKKIAELASG--FIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGF  194 (242)
T ss_pred             ---HHHHHHHhhCCC--CEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEc
Confidence               222233232221  3454   788774332 233345566653 4689999985

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=97.85  E-value=0.0023  Score=66.33  Aligned_cols=199  Identities=15%  Similarity=0.102  Sum_probs=116.3

Q ss_pred             EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      |+..| .|-.+--+..++.++.++.+..+.+.|.++|++|      +.|-..|....+..+.+++   +.+.+.+    .
T Consensus         5 i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~---~~~~~~~----~   77 (333)
T TIGR03217         5 ITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEA---AADVVKR----A   77 (333)
T ss_pred             EEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHH---HHHhCCC----C
Confidence            44555 4544444556899999999999999999999996      3444445555555444444   4443332    1


Q ss_pred             CCeEEEe--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHH
Q 038230          289 GKLVSVD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQV  363 (480)
Q Consensus       289 ~~pISID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev  363 (480)
                      .+-..++  ..+.+-++.|.+.|+++|.=....+..   .+.++.+++.|..++...+.....+                
T Consensus        78 ~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~----------------  141 (333)
T TIGR03217        78 KVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTP----------------  141 (333)
T ss_pred             EEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCC----------------
Confidence            2322332  135788999999999999855443321   4688889999987764332211100                


Q ss_pred             HHHHHHHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhcc-cCC--CcEEEeeccccccccccCCCCcCcccHH
Q 038230          364 ASELYSKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGLA-ASH--APILIGPSRKRFLGEICNRPSADERDPA  438 (480)
Q Consensus       364 ~~~l~~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l~-~~g--~Pil~G~SrKsfi~~v~g~~~~~~r~~~  438 (480)
                      .+++.+.++.+.++|..  .|. .|. |.....   +-.++++.++ .++  .|+  |+=       .      .+-...
T Consensus       142 ~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~---~v~~~v~~l~~~l~~~i~i--g~H-------~------HnnlGl  201 (333)
T TIGR03217       142 PEKLAEQAKLMESYGAD--CVYIVDSAGAMLPD---DVRDRVRALKAVLKPETQV--GFH-------A------HHNLSL  201 (333)
T ss_pred             HHHHHHHHHHHHhcCCC--EEEEccCCCCCCHH---HHHHHHHHHHHhCCCCceE--EEE-------e------CCCCch
Confidence            15667888888899986  443 466 332333   3344444442 233  444  331       0      112223


Q ss_pred             HHHHHHHHHHcCCcEEEcC
Q 038230          439 TIASITAGVLGGANIVRVH  457 (480)
Q Consensus       439 t~a~~~~a~~~Ga~IlRvH  457 (480)
                      ..+-+..|++.||+.+.+.
T Consensus       202 a~ANslaAi~aGa~~iD~S  220 (333)
T TIGR03217       202 AVANSIAAIEAGATRIDAS  220 (333)
T ss_pred             HHHHHHHHHHhCCCEEEee
Confidence            3344555777888876553

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=97.78  E-value=0.0082  Score=65.83  Aligned_cols=237  Identities=18%  Similarity=0.176  Sum_probs=152.9

Q ss_pred             cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230          195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL  274 (480)
Q Consensus       195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl  274 (480)
                      .+...+|+..++.+.+..|=--.|..         -.|.++.+++++++.++|++++=+-.    |+      .+|.+.+
T Consensus        11 Tr~V~vG~v~iGg~~PI~vQSMt~t~---------T~D~~atv~Qi~~l~~aGceiVRvtv----~~------~~~a~~l   71 (611)
T PRK02048         11 TSVVNIGATPLGGPNPIRIQSMTNTS---------TMDTEACVAQAKRIIDAGGEYVRLTT----QG------VREAENL   71 (611)
T ss_pred             ceEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhH
Confidence            34467788888776555544444433         37899999999999999999999965    32      4677777


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCC---------------------------chHH
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLD---------------------------PDMY  326 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d---------------------------~~m~  326 (480)
                      ..+.+.+++.-  .++|+.-|- |+|.++.+|+++ ++=|- |+.++.-                           ..++
T Consensus        72 ~~I~~~l~~~G--~~iPLVADIHF~~~~A~~a~~~-v~kiR-INPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v  147 (611)
T PRK02048         72 MNINIGLRSQG--YMVPLVADVHFNPKVADVAAQY-AEKVR-INPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFL  147 (611)
T ss_pred             HHHHHHHhhcC--CCCCEEEecCCCcHHHHHHHHh-hCCEE-ECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHH
Confidence            77777776542  478999995 899999999997 44322 2233221                           1278


Q ss_pred             HHHHhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHh
Q 038230          327 KVVAGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG  405 (480)
Q Consensus       327 ~l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~  405 (480)
                      +.|+++|+++=+=-+.|. ++..    -..|.+..+.+.+...+-++.+++.|+.  +|++=-=   +.+..+.+...|.
T Consensus       148 ~~ak~~~~~iRIGvN~GSL~~~i----~~~yg~tpe~mVeSAle~~~i~e~~~f~--diviS~K---sS~~~~~V~AyRl  218 (611)
T PRK02048        148 NICKENHTAIRIGVNHGSLSDRI----MSRYGDTPEGMVESCMEFLRICVEEHFT--DVVISIK---ASNTVVMVRTVRL  218 (611)
T ss_pred             HHHHHCCCCEEEecCCcCchHHH----HHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEEEEE---eCCcHHHHHHHHH
Confidence            888999999887665553 2222    1235666777888888999999999997  8887531   1222333444444


Q ss_pred             c------ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCCh----HHHHHHHHHHHHH
Q 038230          406 L------AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHNI----RDNLDAVKLCDSM  472 (480)
Q Consensus       406 l------~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHdV----~e~~~al~~~~ai  472 (480)
                      +      +...+|+.+|++--       |.. ..-+.- +++-...++..| .|-||+.-.    .|..-|..+.++.
T Consensus       219 La~~l~~~g~dyPLHLGvTEA-------G~~-edg~IK-SAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~  287 (611)
T PRK02048        219 LVAVMEAEGMHYPLHLGVTEA-------GDG-EDGRIK-SAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYI  287 (611)
T ss_pred             HHHHHHhcCCCCceEEEEecC-------CCC-cCceeh-hHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHH
Confidence            4      23589999998622       222 112332 333334455566 788898773    3444444444444

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=97.77  E-value=0.003  Score=65.21  Aligned_cols=234  Identities=17%  Similarity=0.253  Sum_probs=143.5

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      ..+|+..++.+.+..|=--.| ||        -.|.+..+++.+++.++|++++=+-..          ..++.+-+..+
T Consensus         4 V~VG~v~IGG~~PI~VQSMt~-t~--------t~Dv~atv~QI~~L~~aGceivRvavp----------~~~~a~al~~I   64 (359)
T PF04551_consen    4 VRVGNVPIGGGAPISVQSMTN-TD--------TRDVEATVAQIKRLEEAGCEIVRVAVP----------DMEAAEALKEI   64 (359)
T ss_dssp             EEETTEEESTTS--EEEEE---S---------TT-HHHHHHHHHHHHHCT-SEEEEEE-----------SHHHHHHHHHH
T ss_pred             EEEcCEeecCCCCEEEEecCC-CC--------cccHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHH
Confidence            456777777766655555566 44        478999999999999999999999652          24666667666


Q ss_pred             HHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCC-----------C---chHHHHHHhcCCCEEEEcCC
Q 038230          278 LEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQL-----------D---PDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~-----------d---~~m~~l~~~~~~~vVlmh~~  342 (480)
                      .+.|++..  +++|+.-|- |++..+.+|+++ ++-|- |+.++.           +   .++++.|+++++|+=+=-+.
T Consensus        65 ~~~l~~~g--~~iPlVADIHFd~~lAl~a~~~-v~kiR-INPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~  140 (359)
T PF04551_consen   65 KKRLRALG--SPIPLVADIHFDYRLALEAIEA-VDKIR-INPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNS  140 (359)
T ss_dssp             HHHHHCTT---SS-EEEEESTTCHHHHHHHHC--SEEE-E-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEG
T ss_pred             HHhhccCC--CCCCeeeecCCCHHHHHHHHHH-hCeEE-ECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEeccc
Confidence            77777653  479999995 899999999999 77554 444443           1   36889999999998765444


Q ss_pred             C-CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccc
Q 038230          343 G-DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRK  420 (480)
Q Consensus       343 g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrK  420 (480)
                      | .++.+.+    .|.+..+.+.+...+.++.+++.|+.  +|++=-   =+.+....++..|.+ +..+||+-+|+.  
T Consensus       141 GSL~~~~~~----ky~~t~~amvesA~~~~~~le~~~f~--~iviSl---KsSdv~~~i~ayr~la~~~dyPLHLGvT--  209 (359)
T PF04551_consen  141 GSLEKDILE----KYGPTPEAMVESALEHVRILEELGFD--DIVISL---KSSDVPETIEAYRLLAERMDYPLHLGVT--  209 (359)
T ss_dssp             GGS-HHHHH----HHCHHHHHHHHHHHHHHHHHHHCT-G--GEEEEE---EBSSHHHHHHHHHHHHHH--S-EEEEBS--
T ss_pred             ccCcHHHHh----hccchHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EeCChHHHHHHHHHHHHhcCCCeEEeec--
Confidence            4 3444332    24566677788888999999999996  888754   123344445555555 457899999974  


Q ss_pred             cccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230          421 RFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM  472 (480)
Q Consensus       421 sfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai  472 (480)
                             +-....+-..-+.+....++..| .|-+||-   | +.|..-+..+.+++
T Consensus       210 -------EAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~~EV~va~~IL~al  259 (359)
T PF04551_consen  210 -------EAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPVEEVKVAFEILQAL  259 (359)
T ss_dssp             -------SEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCCCHHHHHHHHHHHT
T ss_pred             -------CCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCchHHHHHHHHHHHHh
Confidence                   21111222222344445556667 6888872   2 55565555555554

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=97.76  E-value=0.0041  Score=62.12  Aligned_cols=199  Identities=17%  Similarity=0.121  Sum_probs=113.1

Q ss_pred             EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQST------RPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eSt------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      |+..| .|-.+--+..++.++.++.++.+.+.|.++|++|..+.      .-+....++.|.++++.   +...      
T Consensus         3 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~---~~~~------   73 (263)
T cd07943           3 IHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAA---EALK------   73 (263)
T ss_pred             EEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHH---Hhcc------
Confidence            34455 45555455668999999999999999999999994321      11112233334444432   2222      


Q ss_pred             CCeEEE----eCCCHHHHHHHHHcCCCEEecCCCCCC---CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHH
Q 038230          289 GKLVSV----DTFYSKVASEAVGKGAHIVNDVSAGQL---DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCK  361 (480)
Q Consensus       289 ~~pISI----DT~~~~v~~aaL~~G~~iINdVsg~~~---d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~  361 (480)
                      +..++.    .-.+.+-++.|++.|+++|+-....+.   -.++++.+++.|..+.+..+....-+              
T Consensus        74 ~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~--------------  139 (263)
T cd07943          74 QAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMAS--------------  139 (263)
T ss_pred             CCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCC--------------
Confidence            233332    234578899999999998875443321   14578888888877665433211110              


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHH
Q 038230          362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPAT  439 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t  439 (480)
                        .+++.+.++++.+.|.+  .|.+ |. +|. -++.+-.++++.++ ..+. +-+|+       +.      .+..+..
T Consensus       140 --~~~~~~~~~~~~~~G~d--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~~-~~l~~-------H~------Hn~~GlA  199 (263)
T cd07943         140 --PEELAEQAKLMESYGAD--CVYVTDS-AGA-MLPDDVRERVRALREALDP-TPVGF-------HG------HNNLGLA  199 (263)
T ss_pred             --HHHHHHHHHHHHHcCCC--EEEEcCC-CCC-cCHHHHHHHHHHHHHhCCC-ceEEE-------Ee------cCCcchH
Confidence              14566777888889986  5544 44 222 22334445555552 3333 23333       11      1222333


Q ss_pred             HHHHHHHHHcCCcEEEcC
Q 038230          440 IASITAGVLGGANIVRVH  457 (480)
Q Consensus       440 ~a~~~~a~~~Ga~IlRvH  457 (480)
                      .|-+..|++.|++++.+.
T Consensus       200 ~AN~laAi~aGa~~vd~s  217 (263)
T cd07943         200 VANSLAAVEAGATRIDGS  217 (263)
T ss_pred             HHHHHHHHHhCCCEEEee
Confidence            344456778899988764

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=97.75  E-value=0.0044  Score=64.32  Aligned_cols=197  Identities=17%  Similarity=0.120  Sum_probs=115.7

Q ss_pred             EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      |+..| .|-++--+..++.++.++.++.+.+.|.++|++|      +.|-..+....+..|.++++   .+.+.      
T Consensus         6 I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~---~~~~~------   76 (337)
T PRK08195          6 ISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAA---AEVVK------   76 (337)
T ss_pred             EEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHH---HHhCC------
Confidence            56666 5655555666899999999999999999999997      22332244445543433333   22222      


Q ss_pred             CCeEE--Ee--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHH
Q 038230          289 GKLVS--VD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCK  361 (480)
Q Consensus       289 ~~pIS--ID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~  361 (480)
                      +..++  ++  ..+.+-++.|.+.|+++|.=....+..   .+.++.+++.|..+.+..+.. +..       +      
T Consensus        77 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~-------~------  142 (337)
T PRK08195         77 QAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMA-------P------  142 (337)
T ss_pred             CCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCC-------C------
Confidence            23333  32  235788999999999988744333321   457888888887776533321 100       0      


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhc-ccC--CCcEEEeeccccccccccCCCCcCccc
Q 038230          362 QVASELYSKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGL-AAS--HAPILIGPSRKRFLGEICNRPSADERD  436 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l-~~~--g~Pil~G~SrKsfi~~v~g~~~~~~r~  436 (480)
                        .+++.+.++.+.++|..  .|. .|. |....   .+-.++++.+ +.+  +.|+  |+=         +    .+-.
T Consensus       143 --~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P---~~v~~~v~~l~~~l~~~i~i--g~H---------~----Hnnl  200 (337)
T PRK08195        143 --PEKLAEQAKLMESYGAQ--CVYVVDSAGALLP---EDVRDRVRALRAALKPDTQV--GFH---------G----HNNL  200 (337)
T ss_pred             --HHHHHHHHHHHHhCCCC--EEEeCCCCCCCCH---HHHHHHHHHHHHhcCCCCeE--EEE---------e----CCCc
Confidence              15667888888899986  554 465 33233   3334455554 223  4444  321         0    1222


Q ss_pred             HHHHHHHHHHHHcCCcEEEcC
Q 038230          437 PATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       437 ~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      +...|-+..|++.||+++.+.
T Consensus       201 Gla~ANslaAi~aGa~~iD~S  221 (337)
T PRK08195        201 GLGVANSLAAVEAGATRIDGS  221 (337)
T ss_pred             chHHHHHHHHHHhCCCEEEec
Confidence            334444556778888876653

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=97.74  E-value=0.0026  Score=63.36  Aligned_cols=189  Identities=19%  Similarity=0.133  Sum_probs=112.2

Q ss_pred             ecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEe
Q 038230          218 NLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVD  295 (480)
Q Consensus       218 N~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISID  295 (480)
                      .+| .|-+.--+..++.++.++.++.+.+.|.+.|++|.    |..    .+.+++.+.    .+.+..  .+.. ...-
T Consensus         3 D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~----p~~----~~~~~e~~~----~l~~~~--~~~~~~~~~   68 (259)
T cd07939           3 DTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGI----PAM----GEEEREAIR----AIVALG--LPARLIVWC   68 (259)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEec----CCC----CHHHHHHHH----HHHhcC--CCCEEEEec
Confidence            344 45554445678999999999999999999999995    321    134455443    333321  1233 3344


Q ss_pred             CCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          296 TFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       296 T~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      ..+++-++.|++.|+++|.=..... +                  .++++.+++.|..+.+........+          
T Consensus        69 r~~~~~v~~a~~~g~~~i~i~~~~s-~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~----------  137 (259)
T cd07939          69 RAVKEDIEAALRCGVTAVHISIPVS-DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRAD----------  137 (259)
T ss_pred             cCCHHHHHHHHhCCcCEEEEEEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCC----------
Confidence            4788999999999999877432211 1                  2466788888887665443321110          


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ec-CCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIII-DP-GLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-giGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                            .+++.+.++.+.++|+.  .|.+ |. |....   .+-.++++.++ ..+.|  +|+-       .      .+
T Consensus       138 ------~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~P---~~v~~lv~~l~~~~~~~--l~~H-------~------Hn  191 (259)
T cd07939         138 ------PDFLIEFAEVAQEAGAD--RLRFADTVGILDP---FTTYELIRRLRAATDLP--LEFH-------A------HN  191 (259)
T ss_pred             ------HHHHHHHHHHHHHCCCC--EEEeCCCCCCCCH---HHHHHHHHHHHHhcCCe--EEEE-------e------cC
Confidence                  15677888888899986  5544 55 33333   33444555542 23344  3431       1      12


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcC
Q 038230          435 RDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      ..+...|-+..|++.|++++.+-
T Consensus       192 ~~Gla~An~laAi~aG~~~vd~s  214 (259)
T cd07939         192 DLGLATANTLAAVRAGATHVSVT  214 (259)
T ss_pred             CCChHHHHHHHHHHhCCCEEEEe
Confidence            22334444566788999887653

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=97.73  E-value=0.012  Score=60.98  Aligned_cols=233  Identities=15%  Similarity=0.216  Sum_probs=151.8

Q ss_pred             cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230          195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL  274 (480)
Q Consensus       195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl  274 (480)
                      .+...+|+..++.+.+..|=--.|..         -.|.++.+++++++.++|++++=+-.    |+      .++.+  
T Consensus        12 tr~V~VG~v~iGg~~Pi~VQSMt~t~---------T~Dv~atv~Qi~~L~~aGceiVRvav----~~------~~~a~--   70 (360)
T PRK00366         12 TRQVKVGNVPIGGDAPIVVQSMTNTD---------TADVEATVAQIKRLARAGCEIVRVAV----PD------MEAAA--   70 (360)
T ss_pred             ceEEEEcCEeECCCCcEEEEecCCCC---------chhHHHHHHHHHHHHHcCCCEEEEcc----CC------HHHHH--
Confidence            34567788888776544443333433         36899999999999999999999965    22      23333  


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCC------chHHHHHHhcCCCEEEEcCCC-CCC
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLD------PDMYKVVAGLKVPYVAMHMRG-DPS  346 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d------~~m~~l~~~~~~~vVlmh~~g-~p~  346 (480)
                        .++.|++.   .++|+.-|- |++..+.+|+++|++-|- |+.++..      .++++.|+++++|+=+=-+.| .++
T Consensus        71 --al~~I~~~---~~iPlvADIHFd~~lAl~a~~~G~~~iR-INPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~  144 (360)
T PRK00366         71 --ALPEIKKQ---LPVPLVADIHFDYRLALAAAEAGADALR-INPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEK  144 (360)
T ss_pred             --hHHHHHHc---CCCCEEEecCCCHHHHHHHHHhCCCEEE-ECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChH
Confidence              35666666   479999995 899999999999999774 6665532      358889999999998755544 343


Q ss_pred             ccccccccchhh-HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccc
Q 038230          347 TMQNEENLQYDD-VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLG  424 (480)
Q Consensus       347 ~~~~~~~~~~~~-v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~  424 (480)
                      ...+    .|.+ ..+.+.+...+.++.+++.|+.  +|++=-   =+.+....++..|.+ +..+||+=+|+.      
T Consensus       145 ~~~~----~yg~~t~eamveSAl~~~~~le~~~f~--~iviS~---KsS~v~~~i~ayrlla~~~dyPLHlGvT------  209 (360)
T PRK00366        145 DLLE----KYGEPTPEALVESALRHAKILEELGFD--DIKISV---KASDVQDLIAAYRLLAKRCDYPLHLGVT------  209 (360)
T ss_pred             HHHH----HcCCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHHHhcCCCCceeccc------
Confidence            3322    2333 3455677788899999999996  888753   122334444444444 457999999974      


Q ss_pred             cccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230          425 EICNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM  472 (480)
Q Consensus       425 ~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai  472 (480)
                         +.-...+-..-+++....++..| .|=+||-   | +.|.+-+-.+.+.+
T Consensus       210 ---EAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~IL~sl  259 (360)
T PRK00366        210 ---EAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEILQSL  259 (360)
T ss_pred             ---CCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence               22111222223444445555666 6888873   3 55555555554443

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=97.65  E-value=0.0042  Score=62.17  Aligned_cols=192  Identities=16%  Similarity=0.086  Sum_probs=114.1

Q ss_pred             ecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230          218 NLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT  296 (480)
                      ..| .|-+.--+..++.++.++.++.+.+.|.+.|++|..+.       ++ ++++++    +.+.+..  .+..++.=+
T Consensus         3 D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~-------~~-~~~~~~----~~l~~~~--~~~~~~~l~   68 (268)
T cd07940           3 DTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAA-------SP-GDFEAV----KRIAREV--LNAEICGLA   68 (268)
T ss_pred             CCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------CH-HHHHHH----HHHHHhC--CCCEEEEEc
Confidence            344 45555556678999999999999999999999995322       22 345443    4444421  245555433


Q ss_pred             -CCHHHHHHHHHcC----CCEEecCCCCC---------C--C------chHHHHHHhcCCCEEEEcCCCCCCcccccccc
Q 038230          297 -FYSKVASEAVGKG----AHIVNDVSAGQ---------L--D------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENL  354 (480)
Q Consensus       297 -~~~~v~~aaL~~G----~~iINdVsg~~---------~--d------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~  354 (480)
                       .+.+.++.|++.|    +++|+=..+..         .  +      .++++.+++.|..+.+..+.+...+       
T Consensus        69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~-------  141 (268)
T cd07940          69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTD-------  141 (268)
T ss_pred             cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCC-------
Confidence             6789999999998    88777432210         0  0      2466677788877775443211111       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ec-CCCCccChhHHHHHHHhcc-cCC-CcEEEeeccccccccccCCC
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DP-GLGFSKKAEHNLDILLGLA-ASH-APILIGPSRKRFLGEICNRP  430 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-giGf~k~~~~~~~~lr~l~-~~g-~Pil~G~SrKsfi~~v~g~~  430 (480)
                               .+++.+.++.+.++|+.  .|.+ |- |.+.   +.+..++++.++ .++ .++-+|+-            
T Consensus       142 ---------~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~~~i~l~~H------------  195 (268)
T cd07940         142 ---------LDFLIEVVEAAIEAGAT--TINIPDTVGYLT---PEEFGELIKKLKENVPNIKVPISVH------------  195 (268)
T ss_pred             ---------HHHHHHHHHHHHHcCCC--EEEECCCCCCCC---HHHHHHHHHHHHHhCCCCceeEEEE------------
Confidence                     15667888888899986  5544 54 3333   344455566552 222 11333431            


Q ss_pred             CcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          431 SADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       431 ~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                       ..+..+...+-+..|++.|++++.+-
T Consensus       196 -~Hn~~GlA~An~laAi~aG~~~iD~s  221 (268)
T cd07940         196 -CHNDLGLAVANSLAAVEAGARQVECT  221 (268)
T ss_pred             -ecCCcchHHHHHHHHHHhCCCEEEEE
Confidence             11223334444566788899988664

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.64  E-value=0.0018  Score=64.71  Aligned_cols=109  Identities=15%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      |-+.+..++.++.+.+.|||+|.||...+-|-++.---++          -.+.+...++.+++..  .++|+-+-||..
T Consensus        22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~--~~~p~vlm~Y~N   99 (258)
T PRK13111         22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKD--PTIPIVLMTYYN   99 (258)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEeccc
Confidence            4588999999999999999999999977777665322222          1224566677777331  478988999875


Q ss_pred             H--------HHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 K--------VASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~--------v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -        -++.|-++|++  +|+|+.-++ ..++.+.++++|...|.+-.
T Consensus       100 ~i~~~G~e~f~~~~~~aGvdGviipDLp~ee-~~~~~~~~~~~gl~~I~lva  150 (258)
T PRK13111        100 PIFQYGVERFAADAAEAGVDGLIIPDLPPEE-AEELRAAAKKHGLDLIFLVA  150 (258)
T ss_pred             HHhhcCHHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHHHHcCCcEEEEeC
Confidence            4        45566667876  888887532 46789999999999997664

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Probab=97.57  E-value=0.025  Score=63.07  Aligned_cols=237  Identities=15%  Similarity=0.128  Sum_probs=151.0

Q ss_pred             ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230          196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~  275 (480)
                      +...+|+..++.+.+..|=--.|..         -.|.++.+++++++.++|++|+=|-.    |+      .+|.+.+.
T Consensus        81 r~V~VG~v~iGG~~PI~VQSMt~t~---------T~D~eatv~Qi~~l~~aGceiVRvtv----~~------~~~A~al~  141 (733)
T PLN02925         81 RTVMVGNVALGSEHPIRIQTMTTTD---------TKDVEATVDQVMRIADKGADIVRITV----QG------KKEADACF  141 (733)
T ss_pred             eEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhHH
Confidence            4466788888776555443344433         37899999999999999999999965    32      46677777


Q ss_pred             HHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc-CCCEEecCCCCCCC------------------------chHHHHH
Q 038230          276 PVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK-GAHIVNDVSAGQLD------------------------PDMYKVV  329 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~-G~~iINdVsg~~~d------------------------~~m~~l~  329 (480)
                      .+.+.|++..  .++|+.-|- |+|.++.+|++. .+--||==+-...+                        ..+++.|
T Consensus       142 ~I~~~L~~~g--~~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~a  219 (733)
T PLN02925        142 EIKNTLVQKG--YNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKC  219 (733)
T ss_pred             HHHHHHhhcC--CCCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            7777777653  479999995 899999999997 22234422221111                        0278889


Q ss_pred             HhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc--
Q 038230          330 AGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL--  406 (480)
Q Consensus       330 ~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l--  406 (480)
                      +++|+++=+=-+.|. ++..    -..|.+..+.+.+...+-++.+++.|+.  +|+|=-   =+.+....+...|.+  
T Consensus       220 k~~~~~iRIGvN~GSLs~ri----~~~yGdtp~gmVeSAle~~~i~e~~~f~--diviS~---KsSn~~~~V~AyR~La~  290 (733)
T PLN02925        220 KKYGRAMRIGTNHGSLSDRI----MSYYGDSPRGMVESAFEFARICRKLDYH--NFVFSM---KASNPVVMVQAYRLLVA  290 (733)
T ss_pred             HHCCCCEEEecCCcCchHHH----HHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCChHHHHHHHHHHHH
Confidence            999999887666553 2221    1235566667778888999999999996  888742   122333334444443  


Q ss_pred             ----ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCC----hHHHHHHHHHHHH
Q 038230          407 ----AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHN----IRDNLDAVKLCDS  471 (480)
Q Consensus       407 ----~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHd----V~e~~~al~~~~a  471 (480)
                          +...+|+.+|++--       |.. ..-+.- +++-...++..| .|-||+.-    +.|.--+-++++.
T Consensus       291 ~L~~~g~~yPLhLgvTEA-------G~~-edg~IK-SAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~  355 (733)
T PLN02925        291 EMYVLGWDYPLHLGVTEA-------GEG-EDGRMK-SAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANL  355 (733)
T ss_pred             HHHhcCCCCceEEEEecC-------CCC-cCceeh-hHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHH
Confidence                23799999998632       221 112332 333344455566 78888865    4444444444443

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=97.55  E-value=0.0038  Score=62.89  Aligned_cols=152  Identities=14%  Similarity=0.053  Sum_probs=89.9

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-----------
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-----------  296 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-----------  296 (480)
                      |.+++.++-++.|..+.+.|.++|++|..++.-.+..-..+++++++..+.+...      +.++..=+           
T Consensus        15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~------~~~l~~~~r~~~~~~~~~~   88 (275)
T cd07937          15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP------NTPLQMLLRGQNLVGYRHY   88 (275)
T ss_pred             ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC------CCceehhcccccccCccCC
Confidence            4467889999999999999999999997543110011112345666544443332      22222211           


Q ss_pred             ---CCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          297 ---FYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       297 ---~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                         ...+.++.+.+.|+++|.-....+.-   .+.++.+++.|..+..  +...+ +..     +          .+++.
T Consensus        89 p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~-----~----------~~~~~  152 (275)
T cd07937          89 PDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVH-----T----------LEYYV  152 (275)
T ss_pred             CcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCC-----C----------HHHHH
Confidence               25677888888999987754433211   4567888888876653  32222 111     0          15677


Q ss_pred             HHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhc
Q 038230          369 SKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l  406 (480)
                      +.++++.++|..  .|. -|. |.+.   +.+-.++++.+
T Consensus       153 ~~~~~~~~~Ga~--~i~l~DT~G~~~---P~~v~~lv~~l  187 (275)
T cd07937         153 KLAKELEDMGAD--SICIKDMAGLLT---PYAAYELVKAL  187 (275)
T ss_pred             HHHHHHHHcCCC--EEEEcCCCCCCC---HHHHHHHHHHH
Confidence            888888999986  443 366 4433   33444555555

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=97.52  E-value=0.051  Score=55.91  Aligned_cols=232  Identities=16%  Similarity=0.206  Sum_probs=148.2

Q ss_pred             ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230          196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~  275 (480)
                      +...+|+..++.+.+..|=--.|..         -.|.+..+++++++.++|++++=+-.    |+      .++.+   
T Consensus         5 r~V~VG~v~IGG~~PI~VQSMtnt~---------T~Dv~atv~QI~~L~~aGceiVRvav----p~------~~~A~---   62 (346)
T TIGR00612         5 RSVRVGAVPVGGDAPIVVQSMTNTD---------TIDIDSTVAQIRALEEAGCDIVRVTV----PD------RESAA---   62 (346)
T ss_pred             eEEEEcCEeECCCCcEEEEecCCCC---------chhHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHH---
Confidence            3455677777665544443333433         36899999999999999999999965    22      23333   


Q ss_pred             HHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCC--C---chHHHHHHhcCCCEEEEcCCC-CCCcc
Q 038230          276 PVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQL--D---PDMYKVVAGLKVPYVAMHMRG-DPSTM  348 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~--d---~~m~~l~~~~~~~vVlmh~~g-~p~~~  348 (480)
                       .++.|++.   +++|+.-|- |++..+.+|++.|++-|- |+.++.  +   .++++.|+++++|+=+=-+.| .++..
T Consensus        63 -al~~I~~~---~~iPlVADIHFd~~lAl~a~~~g~dkiR-INPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~  137 (346)
T TIGR00612        63 -AFEAIKEG---TNVPLVADIHFDYRLAALAMAKGVAKVR-INPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRL  137 (346)
T ss_pred             -hHHHHHhC---CCCCEEEeeCCCcHHHHHHHHhccCeEE-ECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence             34555655   589999996 558999999999988665 445442  1   468999999999998755544 33322


Q ss_pred             ccccccchh-hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccc
Q 038230          349 QNEENLQYD-DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEI  426 (480)
Q Consensus       349 ~~~~~~~~~-~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v  426 (480)
                      .+    .|. ...+.+.+...+.++.+++.|+.  +|++=-   =+.+....++..|.+ +..+||+=+|+.        
T Consensus       138 ~~----kyg~~t~eamveSAl~~v~~le~~~F~--diviS~---KsSdv~~~i~ayr~la~~~dyPLHlGVT--------  200 (346)
T TIGR00612       138 LE----KYGDATAEAMVQSALEEAAILEKLGFR--NVVLSM---KASDVAETVAAYRLLAERSDYPLHLGVT--------  200 (346)
T ss_pred             HH----HcCCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHHHhhCCCCceeccc--------
Confidence            22    233 34556677888899999999998  888753   122334444444444 457999999974        


Q ss_pred             cCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230          427 CNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM  472 (480)
Q Consensus       427 ~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai  472 (480)
                       +--...+-..-+++....++..| .|=+||-   | +.|.+-+-.+.+++
T Consensus       201 -EAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~sl  250 (346)
T TIGR00612       201 -EAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSL  250 (346)
T ss_pred             -cCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHc
Confidence             22112222233444455566667 7888883   3 55555554444443

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=97.52  E-value=0.01  Score=62.25  Aligned_cols=192  Identities=15%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             EecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230          217 LNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       217 lN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      +..| .|-..-.|..++.++.++.|+.+.+.|.+.|++|..+.        .+.|++.+..+.+...+     ....+.-
T Consensus         5 ~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~--------~~~~~e~i~~i~~~~~~-----~~i~~~~   71 (365)
T TIGR02660         5 NDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAM--------GEEERAVIRAIVALGLP-----ARLMAWC   71 (365)
T ss_pred             EeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC--------CHHHHHHHHHHHHcCCC-----cEEEEEc
Confidence            4445 45554446678999999999999999999999995321        23556655443322111     2234455


Q ss_pred             CCCHHHHHHHHHcCCCEEecCCCCCC-----------C------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhh
Q 038230          296 TFYSKVASEAVGKGAHIVNDVSAGQL-----------D------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDD  358 (480)
Q Consensus       296 T~~~~v~~aaL~~G~~iINdVsg~~~-----------d------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~  358 (480)
                      ..+.+-++.|++.|++.|+=......           +      .++++.+++.|..+......+ +.     .+     
T Consensus        72 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-~r-----~~-----  140 (365)
T TIGR02660        72 RARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-SR-----AD-----  140 (365)
T ss_pred             CCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-CC-----CC-----
Confidence            57899999999999987764433210           0      146778888887766644432 11     11     


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCccc
Q 038230          359 VCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERD  436 (480)
Q Consensus       359 v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~  436 (480)
                           .+++.+.++.+.++|..  .|.+ |. .|. -++.+-.++++.+ +..++|+  |+-         .-   .++ 
T Consensus       141 -----~~~l~~~~~~~~~~Ga~--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~v~l--~~H---------~H---Nd~-  196 (365)
T TIGR02660       141 -----PDFLVELAEVAAEAGAD--RFRFADT-VGI-LDPFSTYELVRALRQAVDLPL--EMH---------AH---NDL-  196 (365)
T ss_pred             -----HHHHHHHHHHHHHcCcC--EEEEccc-CCC-CCHHHHHHHHHHHHHhcCCeE--EEE---------ec---CCC-
Confidence                 15677888888899986  4443 44 222 2334445566655 2334543  321         01   122 


Q ss_pred             HHHHHHHHHHHHcCCcEEEc
Q 038230          437 PATIASITAGVLGGANIVRV  456 (480)
Q Consensus       437 ~~t~a~~~~a~~~Ga~IlRv  456 (480)
                      +...|-+..|+..||+.+-+
T Consensus       197 GlA~ANalaA~~aGa~~vd~  216 (365)
T TIGR02660       197 GMATANTLAAVRAGATHVNT  216 (365)
T ss_pred             ChHHHHHHHHHHhCCCEEEE
Confidence            22333345577778777654

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=97.50  E-value=0.011  Score=59.27  Aligned_cols=185  Identities=17%  Similarity=0.076  Sum_probs=111.6

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--HHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTR----PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--SKVA  302 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr----P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--~~v~  302 (480)
                      ..++.++.++.|+.+.+.|.|+|++|..+..    .+......++.++++.+..   ...   ..+...++..+  .+.+
T Consensus        15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~---~~~~~~~~~~~~~~~~l   88 (266)
T cd07944          15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS---KGN---TKIAVMVDYGNDDIDLL   88 (266)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh---ccC---CEEEEEECCCCCCHHHH
Confidence            3478899999999999999999999954332    2222333456677765433   212   24555566654  6788


Q ss_pred             HHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230          303 SEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS  377 (480)
Q Consensus       303 ~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~  377 (480)
                      +.|.+.|+++|.=....+.-   .++++.+++.|..+.+..+  -+.+                  .+++.+.++++.++
T Consensus        89 ~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~------------------~~~~~~~~~~~~~~  150 (266)
T cd07944          89 EPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYS------------------DEELLELLELVNEI  150 (266)
T ss_pred             HHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCC------------------HHHHHHHHHHHHhC
Confidence            88988999987643333211   4577888888877765432  2111                  15667888888889


Q ss_pred             CCCCCCE-EEec-CCCCccChhHHHHHHHhcc-cCC--CcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc
Q 038230          378 GIPAWRI-IIDP-GLGFSKKAEHNLDILLGLA-ASH--APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN  452 (480)
Q Consensus       378 Gi~~~~I-ilDP-giGf~k~~~~~~~~lr~l~-~~g--~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~  452 (480)
                      |..  .| +-|. |..   ++.+-.++++.++ ..+  .|+  |+       +      ..+..+...+-+..|++.|++
T Consensus       151 g~~--~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~~~i--~~-------H------~Hn~~Gla~AN~laA~~aGa~  210 (266)
T cd07944         151 KPD--VFYIVDSFGSM---YPEDIKRIISLLRSNLDKDIKL--GF-------H------AHNNLQLALANTLEAIELGVE  210 (266)
T ss_pred             CCC--EEEEecCCCCC---CHHHHHHHHHHHHHhcCCCceE--EE-------E------eCCCccHHHHHHHHHHHcCCC
Confidence            986  44 4476 332   3344455555552 233  554  32       1      012223344445567778888


Q ss_pred             EEEcC
Q 038230          453 IVRVH  457 (480)
Q Consensus       453 IlRvH  457 (480)
                      ++.+.
T Consensus       211 ~vd~s  215 (266)
T cd07944         211 IIDAT  215 (266)
T ss_pred             EEEEe
Confidence            77653

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=97.49  E-value=0.011  Score=62.44  Aligned_cols=193  Identities=18%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             EEEEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          214 MGILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       214 mGIlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      +=|+..| .|-+.-.|..++.++-++.|+.+.+.|.+.|++|..+.        .++|++.+..+    .+..  .+..+
T Consensus         5 v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~--------~~~~~e~i~~i----~~~~--~~~~i   70 (378)
T PRK11858          5 IEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAV--------SEDEKEAIKAI----AKLG--LNASI   70 (378)
T ss_pred             eEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCc--------ChHHHHHHHHH----HhcC--CCeEE
Confidence            3466777 56666667789999999999999999999999995322        23555554333    3221  12333


Q ss_pred             E-EeCCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEEEEcCCCCCCccccccc
Q 038230          293 S-VDTFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEEN  353 (480)
Q Consensus       293 S-IDT~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~  353 (480)
                      . .--.+.+-++.|++.|++.|+=.-... +                  .+.++.+++.|..+.+....+.-      . 
T Consensus        71 ~~~~r~~~~di~~a~~~g~~~i~i~~~~S-d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r------~-  142 (378)
T PRK11858         71 LALNRAVKSDIDASIDCGVDAVHIFIATS-DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR------T-  142 (378)
T ss_pred             EEEcccCHHHHHHHHhCCcCEEEEEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC------C-
Confidence            3 333458889999999999877443322 1                  23666888888887765432211      1 


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCC
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPS  431 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~  431 (480)
                          +     .+++.+.++.+.++|..  .|. -|. .|.. ++.+-.++++.+ +..+.|+  |+-       .  -  
T Consensus       143 ----~-----~~~l~~~~~~~~~~Ga~--~I~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~l--~~H-------~--H--  196 (378)
T PRK11858        143 ----D-----LDFLIEFAKAAEEAGAD--RVRFCDT-VGIL-DPFTMYELVKELVEAVDIPI--EVH-------C--H--  196 (378)
T ss_pred             ----C-----HHHHHHHHHHHHhCCCC--EEEEecc-CCCC-CHHHHHHHHHHHHHhcCCeE--EEE-------e--c--
Confidence                1     16777888889999986  444 365 2322 334445566665 2335554  321       0  0  


Q ss_pred             cCcccHHHHHHHHHHHHcCCcEEEc
Q 038230          432 ADERDPATIASITAGVLGGANIVRV  456 (480)
Q Consensus       432 ~~~r~~~t~a~~~~a~~~Ga~IlRv  456 (480)
                       .++ +...|-+..|++.||+++.+
T Consensus       197 -nd~-GlA~AN~laAv~aGa~~vd~  219 (378)
T PRK11858        197 -NDF-GMATANALAGIEAGAKQVHT  219 (378)
T ss_pred             -CCc-CHHHHHHHHHHHcCCCEEEE
Confidence             122 22333345566777777655

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=97.47  E-value=0.0057  Score=59.14  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~  310 (480)
                      ++.+.+.+.++.--..||++|||-+.            -      .+|+.+++.   +++|||+-+-+|+.+-+|+++||
T Consensus        24 Fd~~~V~~i~~AA~~ggAt~vDIAad------------p------~LV~~~~~~---s~lPICVSaVep~~f~~aV~AGA   82 (242)
T PF04481_consen   24 FDAESVAAIVKAAEIGGATFVDIAAD------------P------ELVKLAKSL---SNLPICVSAVEPELFVAAVKAGA   82 (242)
T ss_pred             cCHHHHHHHHHHHHccCCceEEecCC------------H------HHHHHHHHh---CCCCeEeecCCHHHHHHHHHhCC
Confidence            56677888888888999999999863            1      123444544   58999999999999999999999


Q ss_pred             CEEecCCCC--------CC-CchHHHHHHhc
Q 038230          311 HIVNDVSAG--------QL-DPDMYKVVAGL  332 (480)
Q Consensus       311 ~iINdVsg~--------~~-d~~m~~l~~~~  332 (480)
                      +||- |-.+        .+ .++++.+.++.
T Consensus        83 dliE-IGNfDsFY~qGr~f~a~eVL~Lt~~t  112 (242)
T PF04481_consen   83 DLIE-IGNFDSFYAQGRRFSAEEVLALTRET  112 (242)
T ss_pred             CEEE-ecchHHHHhcCCeecHHHHHHHHHHH
Confidence            9996 3111        01 15788888875

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=97.40  E-value=0.012  Score=57.99  Aligned_cols=194  Identities=16%  Similarity=0.175  Sum_probs=115.9

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-HH
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-SK  300 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-~~  300 (480)
                      |-+.--+..++.++.++.++.+.+.|.++|++|+.+..+.. +.- +++++    +++.+.+..  .+.++...+.+ .+
T Consensus         7 DG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~-~~~~~----~i~~l~~~~--~~~~~~~l~~~~~~   78 (265)
T cd03174           7 DGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQM-EDDWE----VLRAIRKLV--PNVKLQALVRNREK   78 (265)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccC-CCHHH----HHHHHHhcc--CCcEEEEEccCchh
Confidence            33333345579999999999999999999999985543221 110 12232    344455542  25778666666 99


Q ss_pred             HHHHHHHcCCCEEecCCCCC---------------C--CchHHHHHHhcCCCEEEEcCCCC-C-CccccccccchhhHHH
Q 038230          301 VASEAVGKGAHIVNDVSAGQ---------------L--DPDMYKVVAGLKVPYVAMHMRGD-P-STMQNEENLQYDDVCK  361 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~---------------~--d~~m~~l~~~~~~~vVlmh~~g~-p-~~~~~~~~~~~~~v~~  361 (480)
                      .++.+.+.|++.|.=.-...               .  -.+.++.++++|..+.+..+.-. | .+              
T Consensus        79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~--------------  144 (265)
T cd03174          79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTD--------------  144 (265)
T ss_pred             hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCC--------------
Confidence            99999999988665322211               0  13467778889988776443211 1 11              


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHHH
Q 038230          362 QVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPAT  439 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t  439 (480)
                        .+++.+.++.+.++|..  .|.+=.-.|. -++++-.++++.++  ..+.|+  |+-         .    .+..+..
T Consensus       145 --~~~l~~~~~~~~~~g~~--~i~l~Dt~G~-~~P~~v~~li~~l~~~~~~~~~--~~H---------~----Hn~~gla  204 (265)
T cd03174         145 --PEYVLEVAKALEEAGAD--EISLKDTVGL-ATPEEVAELVKALREALPDVPL--GLH---------T----HNTLGLA  204 (265)
T ss_pred             --HHHHHHHHHHHHHcCCC--EEEechhcCC-cCHHHHHHHHHHHHHhCCCCeE--EEE---------e----CCCCChH
Confidence              15677888889999986  6776554553 33344455555552  222333  321         1    1122333


Q ss_pred             HHHHHHHHHcCCcEEEcC
Q 038230          440 IASITAGVLGGANIVRVH  457 (480)
Q Consensus       440 ~a~~~~a~~~Ga~IlRvH  457 (480)
                      .+-+..|+..||+++.+.
T Consensus       205 ~an~laA~~aG~~~id~s  222 (265)
T cd03174         205 VANSLAALEAGADRVDGS  222 (265)
T ss_pred             HHHHHHHHHcCCCEEEec
Confidence            444567788999888653

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PLN02591 tryptophan synthase

Probab=97.38  E-value=0.0017  Score=64.58  Aligned_cols=108  Identities=19%  Similarity=0.291  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE----------RLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~----------rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+.+.-++.++.+++.|||+|.||...+-|-++.---++--.          .+...++.+++.   .++|+-+=||..
T Consensus        12 ~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~---~~~p~ilm~Y~N   88 (250)
T PLN02591         12 DPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ---LSCPIVLFTYYN   88 (250)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEeccc
Confidence            4578899999999999999999999977777655322222111          355566666654   478877777766


Q ss_pred             HHHH--------HHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KVAS--------EAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v~~--------aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -+.+        .|-++|++  ||+|..-++ ..++.+.++++|...|.+-.
T Consensus        89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee-~~~~~~~~~~~gl~~I~lv~  139 (250)
T PLN02591         89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEE-TEALRAEAAKNGIELVLLTT  139 (250)
T ss_pred             HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHcCCeEEEEeC
Confidence            5544        44456876  889887532 47899999999999998764

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=97.38  E-value=0.038  Score=55.04  Aligned_cols=186  Identities=18%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG  307 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~  307 (480)
                      -+.|.+++.|+...+.|+.+|==|.--  |.|.+ .... ++.++.|    +..++.   .++|+.-|-++++-++.+.+
T Consensus        26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G-~~gl~~L----~~~~~~---~Gl~~~Tev~d~~~v~~~~e   97 (250)
T PRK13397         26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLG-LQGIRYL----HEVCQE---FGLLSVSEIMSERQLEEAYD   97 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCC-HHHHHHH----HHHHHH---cCCCEEEeeCCHHHHHHHHh
Confidence            578899999999999999999888643  33332 2222 2333332    333443   39999999999999999988


Q ss_pred             cCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230          308 KGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII  386 (480)
Q Consensus       308 ~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil  386 (480)
                       .+|++- |-+++ ..-.+++.+++.|.||++-.  |.-.++                +.....++++.+.|.+  +|+|
T Consensus        98 -~vdilq-Igs~~~~n~~LL~~va~tgkPVilk~--G~~~t~----------------~e~~~A~e~i~~~Gn~--~i~L  155 (250)
T PRK13397         98 -YLDVIQ-VGARNMQNFEFLKTLSHIDKPILFKR--GLMATI----------------EEYLGALSYLQDTGKS--NIIL  155 (250)
T ss_pred             -cCCEEE-ECcccccCHHHHHHHHccCCeEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEEE
Confidence             588886 44433 24679999999999999832  322221                3345677778889975  7777


Q ss_pred             ec-CC-CCccCh--hHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          387 DP-GL-GFSKKA--EHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       387 DP-gi-Gf~k~~--~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      == |+ +|....  .-++..+..++ .+++|+++|.| -+     .|     .|.....+ +-.|+..||+  ++-+|.
T Consensus       156 ~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs-----~G-----~r~~v~~~-a~AAvA~GAdGl~IE~H~  222 (250)
T PRK13397        156 CERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HS-----TG-----RRDLLLPA-AKIAKAVGANGIMMEVHP  222 (250)
T ss_pred             EccccCCCCCccccccCHHHHHHHHHHhCCCeEECCC-CC-----Cc-----ccchHHHH-HHHHHHhCCCEEEEEecC
Confidence            66 65 343221  22333333332 47999999998 33     23     34444332 4567789999  999998

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=97.37  E-value=0.024  Score=56.68  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=77.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCCC-
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTFY-  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~~-  298 (480)
                      +-+.+.-++.++.+.+.|||+|.+|...+-|-++.---++-          ++.+...++.+++..  .++|+-+=||. 
T Consensus        20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~plv~m~Y~N   97 (256)
T TIGR00262        20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH--PNIPIGLLTYYN   97 (256)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEecc
Confidence            35788999999999999999999999777776553222221          135556677777531  36786677765 


Q ss_pred             H-------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          299 S-------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 ~-------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      |       +-++++.++|++  +|.|..-.+ ..++++.++++|...|++-.
T Consensus        98 pi~~~G~e~f~~~~~~aGvdgviipDlp~ee-~~~~~~~~~~~gl~~i~lv~  148 (256)
T TIGR00262        98 LIFRKGVEEFYAKCKEVGVDGVLVADLPLEE-SGDLVEAAKKHGVKPIFLVA  148 (256)
T ss_pred             HHhhhhHHHHHHHHHHcCCCEEEECCCChHH-HHHHHHHHHHCCCcEEEEEC
Confidence            3       457777888988  677775422 36789999999998886554

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated

Probab=97.33  E-value=0.096  Score=57.37  Aligned_cols=238  Identities=13%  Similarity=0.129  Sum_probs=153.0

Q ss_pred             cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230          195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL  274 (480)
Q Consensus       195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl  274 (480)
                      .+...+|+..++.+.+..|=--.|..         -.|.++.+++++++.++|++++=+-.    |+      .++.+.+
T Consensus        15 Tr~V~VG~v~iGG~~PI~VQSMt~t~---------T~D~~atv~Qi~~L~~aGceiVRvtv----p~------~~~A~al   75 (606)
T PRK00694         15 THPVRIGNLFVGSEHSIKIQSMTTTA---------TTDVDGTVRQICALQEWGCDIVRVTV----QG------LKEAQAC   75 (606)
T ss_pred             ceEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhH
Confidence            34467788888776655554444443         37899999999999999999999965    32      4677777


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCC--EEecCCCCC---------C------------C---chHHH
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAH--IVNDVSAGQ---------L------------D---PDMYK  327 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~--iINdVsg~~---------~------------d---~~m~~  327 (480)
                      ..+.+.|++..  .++|+.-|- |+|.++.+|+++ ++  -||==+-..         +            .   ..+++
T Consensus        76 ~~I~~~L~~~g--~~iPLVADIHF~~~~A~~a~~~-vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~  152 (606)
T PRK00694         76 EHIKERLIQQG--ISIPLVADIHFFPQAAMHVADF-VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVE  152 (606)
T ss_pred             HHHHHHHhccC--CCCCEEeecCCChHHHHHHHHh-cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHH
Confidence            77777777653  479999996 999999999997 33  344222111         0            0   23778


Q ss_pred             HHHhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChh---HHHHHH
Q 038230          328 VVAGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAE---HNLDIL  403 (480)
Q Consensus       328 l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~---~~~~~l  403 (480)
                      .|+++|+++=+=-+.|. ++..-    ..|.+..+.+.+...+-++.+++.|+.  +|++=-   =+.+..   +.+++|
T Consensus       153 ~ake~~~~IRIGvN~GSL~~~i~----~~yG~tpegmVeSAle~~~i~e~~~f~--diviS~---KsSnv~~mi~AyrlL  223 (606)
T PRK00694        153 KCKRLGKAMRIGVNHGSLSERVM----QRYGDTIEGMVYSALEYIEVCEKLDYR--DVVFSM---KSSNPKVMVAAYRQL  223 (606)
T ss_pred             HHHHCCCCEEEecCCcCchHHHH----HHhCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHH
Confidence            88899999887666553 32221    235566677788888999999999996  888743   122233   334444


Q ss_pred             Hh-c--ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCC----hHHHHHHHHHHHHH
Q 038230          404 LG-L--AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHN----IRDNLDAVKLCDSM  472 (480)
Q Consensus       404 r~-l--~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHd----V~e~~~al~~~~ai  472 (480)
                      .+ +  ....||+=+|+.       =.|.. ...|.--++. ...++..| .|=|||-=    +.|..-|-++.+..
T Consensus       224 a~~~d~eg~~YPLHLGVT-------EAG~g-~~G~IKSavG-IG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~  291 (606)
T PRK00694        224 AKDLDARGWLYPLHLGVT-------EAGSG-TDGIIKSAVG-IGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHT  291 (606)
T ss_pred             HHHhhccCCCcCceeccc-------cCcCC-CCceeHHHHH-HHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHH
Confidence            32 1  124599999974       11322 1234433343 44455566 68888742    55555555555554

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=97.33  E-value=0.0035  Score=62.87  Aligned_cols=109  Identities=15%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE----------RLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~----------rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+.+.-++.++.+++.|||+|.||...+-|-++.-.-++--.          .+...++.+++.   .++|+-+=||..
T Consensus        25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~---~~~p~vlm~Y~N  101 (263)
T CHL00200         25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE---IKAPIVIFTYYN  101 (263)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEeccc
Confidence            4578889999999999999999999977777665322222222          456667777754   478877777774


Q ss_pred             HH--------HHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230          300 KV--------ASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       300 ~v--------~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~  342 (480)
                      -+        ++.|.++|++  +|-|..-++ ..++.+.++++|...|.+-..
T Consensus       102 ~i~~~G~e~F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~gi~~I~lv~P  153 (263)
T CHL00200        102 PVLHYGINKFIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYNIELILLIAP  153 (263)
T ss_pred             HHHHhCHHHHHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcCCCEEEEECC
Confidence            43        5556667888  677776432 478999999999999987753

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=97.31  E-value=0.036  Score=55.57  Aligned_cols=185  Identities=22%  Similarity=0.290  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~  308 (480)
                      -+.+.+++.|+++.+.|+.+.--+..-  |+|.+-.-..++.++.+.    ...+.   .++++.-+-++++.++.+.+.
T Consensus        36 e~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~----~~~~~---~Gl~~~t~~~d~~~~~~l~~~  108 (260)
T TIGR01361        36 ESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLR----RAADE---HGLPVVTEVMDPRDVEIVAEY  108 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHH----HHHHH---hCCCEEEeeCChhhHHHHHhh
Confidence            578899999999999999865544332  333221111245555443    33333   399999999999999999988


Q ss_pred             CCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-
Q 038230          309 GAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-  386 (480)
Q Consensus       309 G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-  386 (480)
                       ++++- |.+.+ ....+++.+++.|.||++-.  |+-.++                +.....++.+.+.|.+  +|+| 
T Consensus       109 -~d~lk-I~s~~~~n~~LL~~~a~~gkPVilk~--G~~~t~----------------~e~~~Ave~i~~~Gn~--~i~l~  166 (260)
T TIGR01361       109 -ADILQ-IGARNMQNFELLKEVGKQGKPVLLKR--GMGNTI----------------EEWLYAAEYILSSGNG--NVILC  166 (260)
T ss_pred             -CCEEE-ECcccccCHHHHHHHhcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--cEEEE
Confidence             88776 54433 34679999999999999843  222121                3344667778888975  6766 


Q ss_pred             ecCC-CC-cc-ChhHHHHHHHhcc-cCCCcEEE--eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          387 DPGL-GF-SK-KAEHNLDILLGLA-ASHAPILI--GPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       387 DPgi-Gf-~k-~~~~~~~~lr~l~-~~g~Pil~--G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      .=|+ .| +. ...-|+..|..++ .+++|+.+  ++|        .|     .|.....+ +..|+..||+  ++-+|-
T Consensus       167 ~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs--------~G-----~r~~~~~~-~~aAva~Ga~gl~iE~H~  232 (260)
T TIGR01361       167 ERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHA--------AG-----RRDLVIPL-AKAAIAAGADGLMIEVHP  232 (260)
T ss_pred             ECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCC--------CC-----ccchHHHH-HHHHHHcCCCEEEEEeCC
Confidence            5566 55 32 2244566666653 46899876  443        12     24443333 4458889999  999997

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=97.17  E-value=0.045  Score=57.41  Aligned_cols=194  Identities=22%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      |+..| .|-..-.|..++.++.++.|+.+.+.|.+.|++|.    |    ...++|++.+..+.+.-.     .....+.
T Consensus         3 i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~----p----~~~~~~~e~i~~i~~~~~-----~~~v~~~   69 (363)
T TIGR02090         3 IFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGF----P----IASEGEFEAIKKISQEGL-----NAEICSL   69 (363)
T ss_pred             EEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----C----CCChHHHHHHHHHHhcCC-----CcEEEEE
Confidence            34445 45554456678999999999999999999999995    2    223467776654443211     1223344


Q ss_pred             eCCCHHHHHHHHHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          295 DTFYSKVASEAVGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       295 DT~~~~v~~aaL~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      =..+++-++.|++.|++.|.=.-+..         ..        .+.++.+++.|..+.+.......      .+    
T Consensus        70 ~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r------~~----  139 (363)
T TIGR02090        70 ARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATR------TD----  139 (363)
T ss_pred             cccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCC------CC----
Confidence            45689999999999998776422210         01        24667788888877765443211      11    


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADER  435 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r  435 (480)
                            .+++.+.++.+.+.|..  .|.+ |. .|. -++.+-.++++.++ ..+.|  +|+       +.  -   .++
T Consensus       140 ------~~~l~~~~~~~~~~g~~--~i~l~DT-~G~-~~P~~v~~li~~l~~~~~~~--l~~-------H~--H---nd~  195 (363)
T TIGR02090       140 ------IDFLIKVFKRAEEAGAD--RINIADT-VGV-LTPQKMEELIKKLKENVKLP--ISV-------HC--H---NDF  195 (363)
T ss_pred             ------HHHHHHHHHHHHhCCCC--EEEEeCC-CCc-cCHHHHHHHHHHHhcccCce--EEE-------Ee--c---CCC
Confidence                  15677888888899986  5544 54 232 22344556666652 23333  332       10  0   122


Q ss_pred             cHHHHHHHHHHHHcCCcEEEcC
Q 038230          436 DPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       436 ~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                       +...|-+..|+..||+++.+.
T Consensus       196 -GlA~AN~laA~~aGa~~vd~s  216 (363)
T TIGR02090       196 -GLATANSIAGVKAGAEQVHVT  216 (363)
T ss_pred             -ChHHHHHHHHHHCCCCEEEEE
Confidence             223333455667787776553

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=97.14  E-value=0.098  Score=53.18  Aligned_cols=198  Identities=14%  Similarity=0.133  Sum_probs=117.9

Q ss_pred             EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |+..| .|-+-.-+.+++.++-++.|+.+.+.|.+.|++|- ...|..- ..+  ++++    +++.|.+.   .+..++
T Consensus         7 I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgs-f~~p~~~p~~~--d~~e----~~~~l~~~---~~~~~~   76 (287)
T PRK05692          7 IVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVAS-FVSPKWVPQMA--DAAE----VMAGIQRR---PGVTYA   76 (287)
T ss_pred             EEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCC-CcCcccccccc--cHHH----HHHhhhcc---CCCeEE
Confidence            56667 57776667889999999999999999999999992 1123211 111  1222    23333332   133333


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecCCCCCC-----------------CchHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDVSAGQL-----------------DPDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdVsg~~~-----------------d~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      .=..+.+-++.|++.|++.|+-......                 -.++++.++++|..+.  ++..-|.|..-  +.+ 
T Consensus        77 ~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~-  153 (287)
T PRK05692         77 ALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVP-  153 (287)
T ss_pred             EEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCC-
Confidence            3246899999999999997775533210                 1247788888998765  33333333211  111 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cC-CCcEEEeeccccccccccCCCC
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-AS-HAPILIGPSRKRFLGEICNRPS  431 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~-g~Pil~G~SrKsfi~~v~g~~~  431 (480)
                               .+++.+.++.+.++|+.  .|.| |. .|.. ++.+-.++++.++ .. +.|+-+ |.             
T Consensus       154 ---------~~~~~~~~~~~~~~G~d--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~i~~-H~-------------  206 (287)
T PRK05692        154 ---------PEAVADVAERLFALGCY--EISLGDT-IGVG-TPGQVRAVLEAVLAEFPAERLAG-HF-------------  206 (287)
T ss_pred             ---------HHHHHHHHHHHHHcCCc--EEEeccc-cCcc-CHHHHHHHHHHHHHhCCCCeEEE-Ee-------------
Confidence                     16778888999999986  5544 54 3333 3455566777762 22 355422 11             


Q ss_pred             cCcccHHHHHHHHHHHHcCCcEE
Q 038230          432 ADERDPATIASITAGVLGGANIV  454 (480)
Q Consensus       432 ~~~r~~~t~a~~~~a~~~Ga~Il  454 (480)
                       .+..+...+-+..|++.|++++
T Consensus       207 -Hn~~Gla~AN~laA~~aG~~~i  228 (287)
T PRK05692        207 -HDTYGQALANIYASLEEGITVF  228 (287)
T ss_pred             -cCCCCcHHHHHHHHHHhCCCEE
Confidence             1122333444556778888888

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=97.13  E-value=0.17  Score=52.85  Aligned_cols=187  Identities=22%  Similarity=0.326  Sum_probs=124.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTR--PMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV  306 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL  306 (480)
                      .-+.+.+++.|+.+.+.|+.++.-|..-.|  |.+ .... ++.++.+    +.+++.   .++++.-+-++++-++.+.
T Consensus       111 IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g-~~gl~~L----~~~~~e---~Gl~~~tev~d~~~v~~~~  182 (352)
T PRK13396        111 VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG-ESALELL----AAAREA---TGLGIITEVMDAADLEKIA  182 (352)
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch-HHHHHHH----HHHHHH---cCCcEEEeeCCHHHHHHHH
Confidence            368899999999999999999997764433  322 2222 4445544    344444   4999999999999999999


Q ss_pred             HcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          307 GKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       307 ~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      ++ +|++- |.+.+ ..-.+++.+++.+.||++-.  |.-.|+                +.+...++.+.+.|.+  +|+
T Consensus       183 ~~-~d~lq-Iga~~~~n~~LL~~va~t~kPVllk~--G~~~t~----------------ee~~~A~e~i~~~Gn~--~vi  240 (352)
T PRK13396        183 EV-ADVIQ-VGARNMQNFSLLKKVGAQDKPVLLKR--GMAATI----------------DEWLMAAEYILAAGNP--NVI  240 (352)
T ss_pred             hh-CCeEE-ECcccccCHHHHHHHHccCCeEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEE
Confidence            98 78876 44433 23578999999999999833  333222                3345667777788875  454


Q ss_pred             -EecCC-CCcc---ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230          386 -IDPGL-GFSK---KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVH  457 (480)
Q Consensus       386 -lDPgi-Gf~k---~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH  457 (480)
                       ..=|+ .|..   ...-++..+..++ .+++|+++=.|      +.+|.     |+. +..++-.|+..||+  ++-+|
T Consensus       241 L~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps------H~~G~-----sd~-~~~~a~AAva~GAdGliIE~H  308 (352)
T PRK13396        241 LCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS------HGTGK-----SEY-VPSMAMAAIAAGTDSLMIEVH  308 (352)
T ss_pred             EEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc------ccCCc-----HHH-HHHHHHHHHhhCCCeEEEEec
Confidence             45576 3421   1233455555443 46899998766      23343     222 22456678889999  99999


Q ss_pred             C
Q 038230          458 N  458 (480)
Q Consensus       458 d  458 (480)
                      .
T Consensus       309 ~  309 (352)
T PRK13396        309 P  309 (352)
T ss_pred             C
Confidence            8

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=97.09  E-value=0.039  Score=59.45  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=121.3

Q ss_pred             EEecC-CCCCCC-CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          216 ILNLT-PDSFSD-GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       216 IlN~t-pDSFsd-gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      |...| .|-+-. ++..++.++-++.|..+.+.|.+.|++++..|.+-+ -.++ +++|+++..+-+.+.      +.++
T Consensus         6 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~~~~~------~~~l   78 (448)
T PRK12331          6 ITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIRKAVK------KTKL   78 (448)
T ss_pred             EEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHHHhCC------CCEE
Confidence            45555 454433 455688999999999999999999999987777632 1233 346777654443322      4455


Q ss_pred             E----------EeC----CCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccc
Q 038230          293 S----------VDT----FYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEEN  353 (480)
Q Consensus       293 S----------IDT----~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~  353 (480)
                      +          .-.    -..+-+++|+++|+++|.=..+.+.-   .++++.+++.|..+.  ++.+.+ |..     +
T Consensus        79 ~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~-----~  152 (448)
T PRK12331         79 QMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS-PVH-----T  152 (448)
T ss_pred             EEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC-CCC-----C
Confidence            4          111    23456688999999988766554421   457888889997643  344433 421     1


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCC
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPS  431 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~  431 (480)
                                .+++.+.++.+.++|+.  .|.| |. .|..+ +.+..++++.++ ..+.|+=+ |.             
T Consensus       153 ----------~~~~~~~a~~l~~~Gad--~I~i~Dt-~G~l~-P~~v~~lv~alk~~~~~pi~~-H~-------------  204 (448)
T PRK12331        153 ----------IDYFVKLAKEMQEMGAD--SICIKDM-AGILT-PYVAYELVKRIKEAVTVPLEV-HT-------------  204 (448)
T ss_pred             ----------HHHHHHHHHHHHHcCCC--EEEEcCC-CCCCC-HHHHHHHHHHHHHhcCCeEEE-Ee-------------
Confidence                      15667888888999986  4544 55 33322 344456677663 35666533 11             


Q ss_pred             cCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          432 ADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       432 ~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                       .+-.+...|-+..|++.||+++.+-
T Consensus       205 -Hnt~GlA~AN~laAieaGad~vD~s  229 (448)
T PRK12331        205 -HATSGIAEMTYLKAIEAGADIIDTA  229 (448)
T ss_pred             -cCCCCcHHHHHHHHHHcCCCEEEee
Confidence             1111223344456778888887664

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=97.09  E-value=0.052  Score=54.75  Aligned_cols=194  Identities=13%  Similarity=0.144  Sum_probs=111.0

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK  300 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~  300 (480)
                      |-+---|.+++.|+-++.++.+.+.|.+.|++|-- ..|.. .....++|.      ++.+...   .+..++.=..+.+
T Consensus         8 DG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~~~~------~~~l~~~---~~~~~~~~~~~~~   77 (274)
T cd07938           8 DGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSF-VSPKWVPQMADAEEV------LAGLPRR---PGVRYSALVPNLR   77 (274)
T ss_pred             CCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCC-CCcccccccCCHHHH------HhhcccC---CCCEEEEECCCHH
Confidence            33444466789999999999999999999999932 12221 112222332      2222222   1343333357889


Q ss_pred             HHHHHHHcCCCEEecCCCCCC---------C--------chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHH
Q 038230          301 VASEAVGKGAHIVNDVSAGQL---------D--------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCK  361 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~~---------d--------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~  361 (480)
                      -++.|++.|++.|+=......         .        .+.++.+++.|..+.  ++..-|-|..-  +.+        
T Consensus        78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~--~~~--------  147 (274)
T cd07938          78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEG--EVP--------  147 (274)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCC--CCC--------
Confidence            999999999887664432220         0        235778888887765  33333333210  000        


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHH
Q 038230          362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPA  438 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~  438 (480)
                        .+++.+.++.+.+.|..  .|.+ |. .|.. ++.+-.++++.++  .++.|+-+ |        .      .+..+.
T Consensus       148 --~~~~~~~~~~~~~~Ga~--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~i~~-H--------~------Hnd~Gl  206 (274)
T cd07938         148 --PERVAEVAERLLDLGCD--EISLGDT-IGVA-TPAQVRRLLEAVLERFPDEKLAL-H--------F------HDTRGQ  206 (274)
T ss_pred             --HHHHHHHHHHHHHcCCC--EEEECCC-CCcc-CHHHHHHHHHHHHHHCCCCeEEE-E--------E------CCCCCh
Confidence              25677888888889986  5544 54 3332 2344455666652  23455432 1        1      122233


Q ss_pred             HHHHHHHHHHcCCcEEEc
Q 038230          439 TIASITAGVLGGANIVRV  456 (480)
Q Consensus       439 t~a~~~~a~~~Ga~IlRv  456 (480)
                      ..+-+..|++.||+++.+
T Consensus       207 A~AN~laA~~aGa~~id~  224 (274)
T cd07938         207 ALANILAALEAGVRRFDS  224 (274)
T ss_pred             HHHHHHHHHHhCCCEEEE
Confidence            444456788899988874

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.07  E-value=0.018  Score=57.75  Aligned_cols=172  Identities=14%  Similarity=0.322  Sum_probs=105.7

Q ss_pred             CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHH
Q 038230          209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVL  278 (480)
Q Consensus       209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi  278 (480)
                      .++.+|+-+-.-         |-+.+.-++.++.+.++|||+|.||...+.|-++.---++          .++.+...+
T Consensus         8 ~~~~li~yitaG---------~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~   78 (259)
T PF00290_consen    8 GRKALIPYITAG---------YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELV   78 (259)
T ss_dssp             TBTEEEEEEETT---------SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred             CCCeEEEEEeCC---------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            456666644443         4588999999999999999999999988888765322222          234456677


Q ss_pred             HHHH-cCCcCCCCeEEEeCCCHHHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCc
Q 038230          279 EAVL-TMPEMEGKLVSVDTFYSKVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPST  347 (480)
Q Consensus       279 ~~l~-~~~~~~~~pISIDT~~~~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~  347 (480)
                      +.++ +.   .++|+-+=||..-+...++        ++|++  ||.|..-++ ..++.+.++++|..+|.+-..   .|
T Consensus        79 ~~ir~~~---~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee-~~~~~~~~~~~gl~~I~lv~p---~t  151 (259)
T PF00290_consen   79 KEIRKKE---PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE-SEELREAAKKHGLDLIPLVAP---TT  151 (259)
T ss_dssp             HHHHHHC---TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG-HHHHHHHHHHTT-EEEEEEET---TS
T ss_pred             HHHhccC---CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHH-HHHHHHHHHHcCCeEEEEECC---CC
Confidence            7888 44   5899999999776655544        45766  888887543 478899999999999977643   22


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-c--cC-hhHHHHHHHhc-ccCCCcEEEee
Q 038230          348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-S--KK-AEHNLDILLGL-AASHAPILIGP  417 (480)
Q Consensus       348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~--k~-~~~~~~~lr~l-~~~g~Pil~G~  417 (480)
                      .++               .+++..+  ...|+    |++=.-.|. |  .. ..+-.+.++++ +..+.|+++|.
T Consensus       152 ~~~---------------Ri~~i~~--~a~gF----iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGF  205 (259)
T PF00290_consen  152 PEE---------------RIKKIAK--QASGF----IYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGF  205 (259)
T ss_dssp             -HH---------------HHHHHHH--H-SSE----EEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEES
T ss_pred             CHH---------------HHHHHHH--hCCcE----EEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEec
Confidence            211               1112112  23566    776544442 2  11 22233445555 24699999986

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.03  E-value=0.044  Score=54.88  Aligned_cols=109  Identities=15%  Similarity=0.317  Sum_probs=80.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----H------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----E------LERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----E------~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+++..++.++.++++|||+|.+|...+-|-++.-.-+.    .      .+.....++.+++..  .++|+.+=||.-
T Consensus        27 dP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~--~~~Pivlm~Y~N  104 (265)
T COG0159          27 DPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG--VKVPIVLMTYYN  104 (265)
T ss_pred             CCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCEEEEEecc
Confidence            3578999999999999999999999977777655322211    1      234556777777542  589999999887


Q ss_pred             HHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -+...++        ++|++  +|-|+--+. .+++.+.+++||...|.+..
T Consensus       105 pi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lva  155 (265)
T COG0159         105 PIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVA  155 (265)
T ss_pred             HHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeC
Confidence            7655544        45877  888887543 46799999999999997765

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=97.01  E-value=0.042  Score=59.50  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=120.9

Q ss_pred             EEecC-CCCCCC-CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLT-PDSFSD-GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~t-pDSFsd-gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |...| .|-+-. ++..++.++-+..|..+.+.|.+.|++|+.+|.+-+.....++.|+++..+-+.+.      +.++.
T Consensus         5 I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~------~~~l~   78 (467)
T PRK14041          5 FVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK------NTKIQ   78 (467)
T ss_pred             EEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC------CCEEE
Confidence            44455 444432 34568899999999999999999999998777653222222456887655443322      34443


Q ss_pred             E--eC-------CCHHH-----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          294 V--DT-------FYSKV-----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       294 I--DT-------~~~~v-----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      .  =.       .+|+-     ++.|++.|+++|.=..+.+.-   ....+.+++.|..+.  ++++.+ |..       
T Consensus        79 ~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~-p~~-------  150 (467)
T PRK14041         79 MLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVS-PVH-------  150 (467)
T ss_pred             EEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccC-CCC-------
Confidence            2  11       13333     788888999988866554421   346778888887554  333333 421       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCc
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSA  432 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~  432 (480)
                         +     .+++.+.++.+.++|..  .|.| |. .|.. ++.+-.++++.++ ..++|+=+ |+              
T Consensus       151 ---t-----~e~~~~~a~~l~~~Gad--~I~i~Dt-~G~l-~P~~v~~Lv~~lk~~~~vpI~~-H~--------------  203 (467)
T PRK14041        151 ---T-----LEYYLEFARELVDMGVD--SICIKDM-AGLL-TPKRAYELVKALKKKFGVPVEV-HS--------------  203 (467)
T ss_pred             ---C-----HHHHHHHHHHHHHcCCC--EEEECCc-cCCc-CHHHHHHHHHHHHHhcCCceEE-Ee--------------
Confidence               0     25677888888999986  5544 65 3332 2344566777663 34566532 11              


Q ss_pred             CcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          433 DERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       433 ~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      .+-.+...|-+..|++.||+++.+-=
T Consensus       204 Hnt~GlA~AN~laAieaGad~vD~sv  229 (467)
T PRK14041        204 HCTTGLASLAYLAAVEAGADMFDTAI  229 (467)
T ss_pred             cCCCCcHHHHHHHHHHhCCCEEEeec
Confidence            11223334445567888998887643

>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]

Probab=97.00  E-value=0.19  Score=51.59  Aligned_cols=209  Identities=19%  Similarity=0.143  Sum_probs=139.8

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC------CC-----CCCC----C
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA------QS-----TRPM----A  262 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~------eS-----trP~----a  262 (480)
                      +.++++.++...+|.|...+-+.-        ..+.|-|.+....-.++|||+|=+=.      .|     +.+.    .
T Consensus         2 ~~Ig~r~i~~~~~~~iIAEig~NH--------nG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~   73 (347)
T COG2089           2 IKIGNRTIGKDKKPFIIAEIGANH--------NGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLW   73 (347)
T ss_pred             eeeCceeecCCCCcEEEeeecccc--------cCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCcccccccc
Confidence            568889998889999999776654        35678888888888889999998753      01     1111    1


Q ss_pred             CCCCHHH-------HHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCC
Q 038230          263 TKISAEK-------ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVP  335 (480)
Q Consensus       263 ~~v~~~e-------E~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~  335 (480)
                      ..+|.=|       -+++-.++.+..++.    ++.+..--|+...+....+.+++..-=-|++--+..+++.+++.+-|
T Consensus        74 ~~~slyel~e~~~~p~e~~~~Lke~a~~~----Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kP  149 (347)
T COG2089          74 DKVSLYELYEEAETPLEWHAQLKEYARKR----GIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKP  149 (347)
T ss_pred             ccccHHHHHHHhcCCHHHHHHHHHHHHHc----CeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCC
Confidence            1222211       123444445555554    88888888899999888888999888667665568899999999999


Q ss_pred             EEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec-CCCCc-cChhHHHHHHHhc-ccCCCc
Q 038230          336 YVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP-GLGFS-KKAEHNLDILLGL-AASHAP  412 (480)
Q Consensus       336 vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP-giGf~-k~~~~~~~~lr~l-~~~g~P  412 (480)
                      +|+..  |+..                 .++.++.++.++++|.+  +|+|== --.+. ...+-|+..+..+ ..++++
T Consensus       150 iIlST--Gma~-----------------~~ei~~av~~~r~~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~  208 (347)
T COG2089         150 IILST--GMAT-----------------IEEIEEAVAILRENGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAI  208 (347)
T ss_pred             EEEEc--cccc-----------------HHHHHHHHHHHHhcCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCc
Confidence            99844  2220                 24567889999999997  555533 33453 3346688888887 345544


Q ss_pred             EEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          413 ILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       413 il~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                        +|+|               |...+++ +...|+..||.++-=|
T Consensus       209 --vGlS---------------DHT~g~~-a~l~AvALGA~viEKH  235 (347)
T COG2089         209 --VGLS---------------DHTLGIL-APLAAVALGASVIEKH  235 (347)
T ss_pred             --cccc---------------cCccchh-HHHHHHHhcccceeee
Confidence              4766               1222333 3567888888887666

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=96.98  E-value=0.12  Score=51.20  Aligned_cols=108  Identities=14%  Similarity=0.056  Sum_probs=73.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHcCCcCCCCeEEEe------CCC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI-----PVLEAVLTMPEMEGKLVSVD------TFY  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~-----~vi~~l~~~~~~~~~pISID------T~~  298 (480)
                      |.+.++-++.++.+.+. ||+|.+|...+.|-++.-.-++-..|..     .+++.+++.   +++|+-+=      .++
T Consensus        14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~---~~~Pl~lM~y~n~~~~~   89 (244)
T PRK13125         14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD---VSVPIILMTYLEDYVDS   89 (244)
T ss_pred             CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc---CCCCEEEEEecchhhhC
Confidence            45788888888888776 9999999977777555433344455554     678888865   47786431      446


Q ss_pred             HHH-HHHHHHcCCCEEecC--CCC--CCCchHHHHHHhcCCCEEEEcC
Q 038230          299 SKV-ASEAVGKGAHIVNDV--SAG--QLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 ~~v-~~aaL~~G~~iINdV--sg~--~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      ++. ++++.++|++.+-=.  -.+  ....++++.++++|...++.-+
T Consensus        90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~  137 (244)
T PRK13125         90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTS  137 (244)
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEEC
Confidence            665 777888899865422  111  1125789999999998887654

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.93  E-value=0.25  Score=49.68  Aligned_cols=185  Identities=20%  Similarity=0.280  Sum_probs=117.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~  308 (480)
                      -+.+.+++.|+++.+.|+.++=.|.+-.|  |.+-.-..++.++.+.    .+.+.   .++|+.-+-+++..++.+.+.
T Consensus        38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~----~~~~~---~Gl~~~te~~d~~~~~~l~~~  110 (266)
T PRK13398         38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILK----EVGDK---YNLPVVTEVMDTRDVEEVADY  110 (266)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHH----HHHHH---cCCCEEEeeCChhhHHHHHHh
Confidence            47899999999999999999999976433  2111111234444433    23333   399999999999999999988


Q ss_pred             CCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-
Q 038230          309 GAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-  386 (480)
Q Consensus       309 G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-  386 (480)
                       ++++- |.+.+- ...++..+++.+.||++-.  |+-.++                +.+...++.+...|-+  +++| 
T Consensus       111 -vd~~k-Iga~~~~n~~LL~~~a~~gkPV~lk~--G~~~s~----------------~e~~~A~e~i~~~Gn~--~i~L~  168 (266)
T PRK13398        111 -ADMLQ-IGSRNMQNFELLKEVGKTKKPILLKR--GMSATL----------------EEWLYAAEYIMSEGNE--NVVLC  168 (266)
T ss_pred             -CCEEE-ECcccccCHHHHHHHhcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHhcCCC--eEEEE
Confidence             78775 555442 3568999999999999843  222121                2233456677788885  5444 


Q ss_pred             ecCC-CCccC--hhHHHHHHHhcc-cCCCcEEE--eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          387 DPGL-GFSKK--AEHNLDILLGLA-ASHAPILI--GPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       387 DPgi-Gf~k~--~~~~~~~lr~l~-~~g~Pil~--G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      .=|. .|...  ..-|+..+..++ .+++|+.+  .+|        .|     .|.... ..+..|+..||+  ++-+|-
T Consensus       169 ~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs--------~G-----~~~~v~-~~~~aAva~Ga~Gl~iE~H~  234 (266)
T PRK13398        169 ERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHA--------TG-----RRELVI-PMAKAAIAAGADGLMIEVHP  234 (266)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCc--------cc-----chhhHH-HHHHHHHHcCCCEEEEeccC
Confidence            4444 23221  123455555553 46899776  333        12     233322 335667789999  999996

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=96.87  E-value=0.074  Score=59.32  Aligned_cols=190  Identities=13%  Similarity=0.111  Sum_probs=119.3

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----------EeCC
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----------VDTF  297 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----------IDT~  297 (480)
                      +..++.++.+..|..+.+.|.+.|+++|.+|.+..-+...+++|+|+..+.+.+.      +.++.          -..|
T Consensus        21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~------~~~lqml~Rg~n~vg~~~y   94 (593)
T PRK14040         21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP------NTPQQMLLRGQNLLGYRHY   94 (593)
T ss_pred             ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC------CCeEEEEecCcceeccccC
Confidence            4457889999999999999999999998888875444445678999866554432      34542          2222


Q ss_pred             CHHH----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          298 YSKV----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       298 ~~~v----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      --++    ++.|.+.|+++|.=..+.+.-   ...++.++++|..+  .++.+. .|..          +     .+++.
T Consensus        95 pddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~-~p~~----------~-----~~~~~  158 (593)
T PRK14040         95 ADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT-SPVH----------T-----LQTWV  158 (593)
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee-CCcc----------C-----HHHHH
Confidence            2233    778888899988755544422   35678888888753  233332 2311          1     26777


Q ss_pred             HHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG  446 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a  446 (480)
                      +.++.+.++|..  .|.| |. .|.. ++.+-.++++.++ ..+.|+=+ |+              .+..+...+-+..|
T Consensus       159 ~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lk~~~~~pi~~-H~--------------Hnt~GlA~An~laA  219 (593)
T PRK14040        159 DLAKQLEDMGVD--SLCIKDM-AGLL-KPYAAYELVSRIKKRVDVPLHL-HC--------------HATTGLSTATLLKA  219 (593)
T ss_pred             HHHHHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHHhcCCeEEE-EE--------------CCCCchHHHHHHHH
Confidence            888888999986  5544 65 2322 2344566777763 34666532 11              12223344445668


Q ss_pred             HHcCCcEEEcCC
Q 038230          447 VLGGANIVRVHN  458 (480)
Q Consensus       447 ~~~Ga~IlRvHd  458 (480)
                      ++.||+++.+.=
T Consensus       220 ieAGa~~vD~ai  231 (593)
T PRK14040        220 IEAGIDGVDTAI  231 (593)
T ss_pred             HHcCCCEEEecc
Confidence            889999887653

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=96.86  E-value=0.057  Score=60.22  Aligned_cols=201  Identities=15%  Similarity=0.092  Sum_probs=119.2

Q ss_pred             EEecC-CCCC-CCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLT-PDSF-SDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~t-pDSF-sdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |...| .|-+ |-+...++.++-+..|..+.+.|.+.|++|+.+|.+-+-.--.++.|+|+..+-+.+.      +.++.
T Consensus         6 i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~------~~~l~   79 (592)
T PRK09282          6 ITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP------NTPLQ   79 (592)
T ss_pred             EEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC------CCEEE
Confidence            44455 4433 2234457889999999999999999999998777653222223477888755443332      34444


Q ss_pred             EeCC--------------CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          294 VDTF--------------YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       294 IDT~--------------~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      .=.+              ..+-++.|.++|+++|.=..+.+.-   ....+.+++.|..+.  ++.+. .|..       
T Consensus        80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~-------  151 (592)
T PRK09282         80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT-SPVH-------  151 (592)
T ss_pred             EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc-CCCC-------
Confidence            3211              2344788899999998866555422   345677788886554  33333 2421       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCc
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSA  432 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~  432 (480)
                         +     .+++.+.++.+.++|..  .|.| |. .|.. ++.+..++++.++ ..+.|+=+ |+              
T Consensus       152 ---t-----~~~~~~~a~~l~~~Gad--~I~i~Dt-~G~~-~P~~~~~lv~~lk~~~~~pi~~-H~--------------  204 (592)
T PRK09282        152 ---T-----IEKYVELAKELEEMGCD--SICIKDM-AGLL-TPYAAYELVKALKEEVDLPVQL-HS--------------  204 (592)
T ss_pred             ---C-----HHHHHHHHHHHHHcCCC--EEEECCc-CCCc-CHHHHHHHHHHHHHhCCCeEEE-EE--------------
Confidence               1     25667888888899986  4544 55 2222 2344456666663 34555422 11              


Q ss_pred             CcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          433 DERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       433 ~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      .+..+...+-+..|++.||+++.+.
T Consensus       205 Hnt~Gla~An~laAv~aGad~vD~a  229 (592)
T PRK09282        205 HCTSGLAPMTYLKAVEAGVDIIDTA  229 (592)
T ss_pred             cCCCCcHHHHHHHHHHhCCCEEEee
Confidence            1122334444556778888877654

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=96.83  E-value=0.83  Score=48.00  Aligned_cols=186  Identities=18%  Similarity=0.260  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG  307 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~  307 (480)
                      -+.+..++.|+.+.+.|+.++=-|.--  |.|. ...++. +.++.+    +...+.   .++++.-+-++++-++.+.+
T Consensus       129 E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~-e~l~~L----~~~~~~---~Gl~~~t~v~d~~~~~~l~~  200 (360)
T PRK12595        129 ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGV-EGLKIL----KQVADE---YGLAVISEIVNPADVEVALD  200 (360)
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCH-HHHHHH----HHHHHH---cCCCEEEeeCCHHHHHHHHH
Confidence            468899999999999999999877543  3342 233442 444433    233333   39999999999999999999


Q ss_pred             cCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230          308 KGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII  386 (480)
Q Consensus       308 ~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil  386 (480)
                      . ++++- |.+++ ..-.++..+++.|.||++-.  |.-.++                +.....++.+.+.|.+  +|+|
T Consensus       201 ~-vd~lk-I~s~~~~n~~LL~~~a~~gkPVilk~--G~~~t~----------------~e~~~Ave~i~~~Gn~--~i~L  258 (360)
T PRK12595        201 Y-VDVIQ-IGARNMQNFELLKAAGRVNKPVLLKR--GLSATI----------------EEFIYAAEYIMSQGNG--QIIL  258 (360)
T ss_pred             h-CCeEE-ECcccccCHHHHHHHHccCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHCCCC--CEEE
Confidence            9 88876 44433 23679999999999999843  322221                3345667777888975  6777


Q ss_pred             ec-CCCC-ccC--hhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          387 DP-GLGF-SKK--AEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       387 DP-giGf-~k~--~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      == |+-+ ...  ..-|+..|..++ .+++|+.++.|.      -+|     +|... ..++-.|+..||+  ++-+|-
T Consensus       259 ~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~H------s~G-----~r~~~-~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        259 CERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTH------STG-----RRDLL-LPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             ECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCC------CCc-----chhhH-HHHHHHHHHcCCCeEEEEecC
Confidence            54 6543 211  122455565553 479998774331      122     23332 2234556788995  999996

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=96.79  E-value=0.076  Score=51.80  Aligned_cols=182  Identities=18%  Similarity=0.184  Sum_probs=110.1

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG  307 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~  307 (480)
                      +..++.++.++.++.+.+.|.++|++|..+.        .+++++.+..+.+.+.+.     ...++-....+.++.+++
T Consensus         8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~--------~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~   74 (237)
T PF00682_consen    8 GVAFSTEEKLEIAKALDEAGVDYIEVGFPFA--------SEDDFEQVRRLREALPNA-----RLQALCRANEEDIERAVE   74 (237)
T ss_dssp             STT--HHHHHHHHHHHHHHTTSEEEEEHCTS--------SHHHHHHHHHHHHHHHSS-----EEEEEEESCHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCCCEEEEccccc--------CHHHHHHhhhhhhhhccc-----ccceeeeehHHHHHHHHH
Confidence            3457899999999999999999999993221        247788887777777652     334555678888888777


Q ss_pred             ----cCCCEEecCCCCCC-----------------CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHH
Q 038230          308 ----KGAHIVNDVSAGQL-----------------DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE  366 (480)
Q Consensus       308 ----~G~~iINdVsg~~~-----------------d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~  366 (480)
                          .|++.|.-....+.                 -.++++.+++.|..+.+..+....-+                .++
T Consensus        75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~----------------~~~  138 (237)
T PF00682_consen   75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTD----------------PEE  138 (237)
T ss_dssp             HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS----------------HHH
T ss_pred             hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc----------------HHH
Confidence                79887764443321                 03567888889988876554321111                145


Q ss_pred             HHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHHHHHHH
Q 038230          367 LYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPATIASI  443 (480)
Q Consensus       367 l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~  443 (480)
                      +.+.++++.++|++  .|.| |- .|.. ++.+-.++++.++  .++.|+  |+-       .      .+..+...|-+
T Consensus       139 ~~~~~~~~~~~g~~--~i~l~Dt-~G~~-~P~~v~~lv~~~~~~~~~~~l--~~H-------~------Hnd~Gla~An~  199 (237)
T PF00682_consen  139 LLELAEALAEAGAD--IIYLADT-VGIM-TPEDVAELVRALREALPDIPL--GFH-------A------HNDLGLAVANA  199 (237)
T ss_dssp             HHHHHHHHHHHT-S--EEEEEET-TS-S--HHHHHHHHHHHHHHSTTSEE--EEE-------E------BBTTS-HHHHH
T ss_pred             HHHHHHHHHHcCCe--EEEeeCc-cCCc-CHHHHHHHHHHHHHhccCCeE--EEE-------e------cCCccchhHHH
Confidence            66777888888986  4443 43 3332 2334455666652  333444  331       0      11222334456


Q ss_pred             HHHHHcCCcEEEcC
Q 038230          444 TAGVLGGANIVRVH  457 (480)
Q Consensus       444 ~~a~~~Ga~IlRvH  457 (480)
                      ..|++.|++++.+.
T Consensus       200 laA~~aGa~~id~t  213 (237)
T PF00682_consen  200 LAALEAGADRIDGT  213 (237)
T ss_dssp             HHHHHTT-SEEEEB
T ss_pred             HHHHHcCCCEEEcc
Confidence            67889999998764

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.79  E-value=0.12  Score=51.91  Aligned_cols=187  Identities=17%  Similarity=0.144  Sum_probs=105.4

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE---------
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV---------  292 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI---------  292 (480)
                      |-+.--+..++.++-++.++.+.+.|.+.|++|..+..|        ++.+.    ++.+++... .+..+         
T Consensus         8 DG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~--------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~   74 (273)
T cd07941           8 DGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP--------KDTEF----FARAKKLKL-KHAKLAAFGSTRRA   74 (273)
T ss_pred             CcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCH--------HHHHH----HHHHHHcCC-CCcEEEEEeccccc
Confidence            344444567899999999999999999999998633222        23322    333332210 01121         


Q ss_pred             EEeCCCHHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcC---CCCCCcccccc
Q 038230          293 SVDTFYSKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHM---RGDPSTMQNEE  352 (480)
Q Consensus       293 SIDT~~~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~---~g~p~~~~~~~  352 (480)
                      .++..+...++.+++.|++.|+-+...         ...        .++++.+++.|..+.+..+   .+..      .
T Consensus        75 ~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~------~  148 (273)
T cd07941          75 GVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYK------A  148 (273)
T ss_pred             CCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCC------C
Confidence            223444567888999999977743211         001        3467788888987766322   2111      0


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCC
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNR  429 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~  429 (480)
                      +          .+++.+.++.+.++|..  .|. -|. +|. -++.+..++++.++  .++.|+  |+-       .   
T Consensus       149 ~----------~~~~~~~~~~~~~~g~~--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~~~~l--~~H-------~---  202 (273)
T cd07941         149 N----------PEYALATLKAAAEAGAD--WLVLCDT-NGG-TLPHEIAEIVKEVRERLPGVPL--GIH-------A---  202 (273)
T ss_pred             C----------HHHHHHHHHHHHhCCCC--EEEEecC-CCC-CCHHHHHHHHHHHHHhCCCCee--EEE-------e---
Confidence            0          15667888888889986  454 465 332 23344455555552  233443  321       0   


Q ss_pred             CCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230          430 PSADERDPATIASITAGVLGGANIVRV  456 (480)
Q Consensus       430 ~~~~~r~~~t~a~~~~a~~~Ga~IlRv  456 (480)
                         .+..+...|-+..|++.|++.+.+
T Consensus       203 ---Hnd~Gla~An~laA~~aGa~~id~  226 (273)
T cd07941         203 ---HNDSGLAVANSLAAVEAGATQVQG  226 (273)
T ss_pred             ---cCCCCcHHHHHHHHHHcCCCEEEE
Confidence               112233344455677889988764

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=96.78  E-value=0.033  Score=53.18  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHH--HHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSK--VASEAV  306 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~--v~~aaL  306 (480)
                      .+.+++++.++.+ +.|.++|.+|-.-+.++.            .++|+.+++..  .+..+-+|+  .+|.  .++++.
T Consensus         9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g------------~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~   73 (206)
T TIGR03128         9 LDIEEALELAEKV-ADYVDIIEIGTPLIKNEG------------IEAVKEMKEAF--PDRKVLADLKTMDAGEYEAEQAF   73 (206)
T ss_pred             CCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC------------HHHHHHHHHHC--CCCEEEEEEeeccchHHHHHHHH
Confidence            5789999999999 999999999842211111            24566666542  256677786  4655  689999


Q ss_pred             HcCCCEEecCCCCCC---CchHHHHHHhcCCCEEEE-cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          307 GKGAHIVNDVSAGQL---DPDMYKVVAGLKVPYVAM-HMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       307 ~~G~~iINdVsg~~~---d~~m~~l~~~~~~~vVlm-h~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      ++|+++|. +-+...   ..++++.++++|.++++- ++   |.|                   ..+.+..+.+.|++  
T Consensus        74 ~~Gad~i~-vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~---~~t-------------------~~~~~~~~~~~g~d--  128 (206)
T TIGR03128        74 AAGADIVT-VLGVADDATIKGAVKAAKKHGKEVQVDLIN---VKD-------------------KVKRAKELKELGAD--  128 (206)
T ss_pred             HcCCCEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEecC---CCC-------------------hHHHHHHHHHcCCC--
Confidence            99999997 444431   157889999999988863 33   211                   11334445667886  


Q ss_pred             CEEEecCCC
Q 038230          383 RIIIDPGLG  391 (480)
Q Consensus       383 ~IilDPgiG  391 (480)
                      =|-+.||++
T Consensus       129 ~v~~~pg~~  137 (206)
T TIGR03128       129 YIGVHTGLD  137 (206)
T ss_pred             EEEEcCCcC
Confidence            667788763

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.65  E-value=0.29  Score=49.53  Aligned_cols=193  Identities=13%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCH
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISE-GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYS  299 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~-GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~  299 (480)
                      |-+--.|.+++.++-++.++.+++. |.+.|++|.-+       +++ +|.+.+..+.+.-.......++.++ + ..+.
T Consensus         7 DG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~-------~s~-~e~~av~~~~~~~~~~~~~~~~~~~a~-~~~~   77 (280)
T cd07945           7 DGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASAR-------VSE-GEFEAVQKIIDWAAEEGLLDRIEVLGF-VDGD   77 (280)
T ss_pred             CcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCC-------CCH-HHHHHHHHHHHHhhhhccccCcEEEEe-cCcH
Confidence            4445556788999999999998655 99999999521       333 5556655555432111000022332 3 2456


Q ss_pred             HHHHHHHHcCCCEEecCCCCC---------CC-c-------hHHHHHHhcCCCEEEEcC-CCCCCccccccccchhhHHH
Q 038230          300 KVASEAVGKGAHIVNDVSAGQ---------LD-P-------DMYKVVAGLKVPYVAMHM-RGDPSTMQNEENLQYDDVCK  361 (480)
Q Consensus       300 ~v~~aaL~~G~~iINdVsg~~---------~d-~-------~m~~l~~~~~~~vVlmh~-~g~p~~~~~~~~~~~~~v~~  361 (480)
                      .-++.|++.|++.|+=+-...         .. +       ++++.+++.|..+.+.-+ -|.|-.    .+        
T Consensus        78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r----~~--------  145 (280)
T cd07945          78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMR----DS--------  145 (280)
T ss_pred             HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCc----CC--------
Confidence            789999999999777442110         01 2       347788888876664332 222210    11        


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHH
Q 038230          362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPA  438 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~  438 (480)
                        .+++.+.++.+.++|+.  .|.+ |- +|... +.+-.++++.++  .++.|+-  +       +.      .+..+.
T Consensus       146 --~~~~~~~~~~~~~~G~~--~i~l~DT-~G~~~-P~~v~~l~~~l~~~~~~~~i~--~-------H~------Hnd~Gl  204 (280)
T cd07945         146 --PDYVFQLVDFLSDLPIK--RIMLPDT-LGILS-PFETYTYISDMVKRYPNLHFD--F-------HA------HNDYDL  204 (280)
T ss_pred             --HHHHHHHHHHHHHcCCC--EEEecCC-CCCCC-HHHHHHHHHHHHhhCCCCeEE--E-------Ee------CCCCCH
Confidence              15677888888999986  4443 54 33322 334556666652  3345542  2       10      112233


Q ss_pred             HHHHHHHHHHcCCcEEEc
Q 038230          439 TIASITAGVLGGANIVRV  456 (480)
Q Consensus       439 t~a~~~~a~~~Ga~IlRv  456 (480)
                      ..|-+..|++.|++.+.+
T Consensus       205 a~AN~laA~~aGa~~vd~  222 (280)
T cd07945         205 AVANVLAAVKAGIKGLHT  222 (280)
T ss_pred             HHHHHHHHHHhCCCEEEE
Confidence            344455677788887764

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=96.61  E-value=0.19  Score=50.46  Aligned_cols=193  Identities=16%  Similarity=0.130  Sum_probs=113.5

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      |+-.|| |.+.--+.+++.++.++.++.+.+.|.+.|.+|.    |.+   + +++.+.+..+. .+...   ..+ .+.
T Consensus         3 I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~----P~~---~-~~~~~~~~~l~-~~~~~---~~v-~~~   69 (262)
T cd07948           3 IIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTS----PAA---S-PQSRADCEAIA-KLGLK---AKI-LTH   69 (262)
T ss_pred             EEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEEC----CCC---C-HHHHHHHHHHH-hCCCC---CcE-EEE
Confidence            344443 5666667789999999999999999999999995    432   1 23344332222 22111   233 444


Q ss_pred             eCCCHHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcCC--CCCCccccccccc
Q 038230          295 DTFYSKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHMR--GDPSTMQNEENLQ  355 (480)
Q Consensus       295 DT~~~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~~--g~p~~~~~~~~~~  355 (480)
                      =..+.+-++.|++.|++.|+=..+.         ...        .++++.+++.|..+.+..+.  +.|          
T Consensus        70 ~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~----------  139 (262)
T cd07948          70 IRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD----------  139 (262)
T ss_pred             ecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC----------
Confidence            4678889999999999987743211         101        23456777788777754432  222          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcC
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSAD  433 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~  433 (480)
                              .+++.+.++.+.++|..  +|.+ |. +|.. ++.+-.++++.++ ..+.|+  |+       +.      .
T Consensus       140 --------~~~l~~~~~~~~~~g~~--~i~l~Dt-~G~~-~P~~v~~~~~~~~~~~~~~i--~~-------H~------H  192 (262)
T cd07948         140 --------LVDLLRVYRAVDKLGVN--RVGIADT-VGIA-TPRQVYELVRTLRGVVSCDI--EF-------HG------H  192 (262)
T ss_pred             --------HHHHHHHHHHHHHcCCC--EEEECCc-CCCC-CHHHHHHHHHHHHHhcCCeE--EE-------EE------C
Confidence                    14456777788888986  5554 54 3322 2334455555552 344554  32       11      1


Q ss_pred             cccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          434 ERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       434 ~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      +-.+...+-+..|++.|++++.+.=
T Consensus       193 n~~Gla~an~~~a~~aG~~~vd~s~  217 (262)
T cd07948         193 NDTGCAIANAYAALEAGATHIDTTV  217 (262)
T ss_pred             CCCChHHHHHHHHHHhCCCEEEEec
Confidence            1223344445667889999876643

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=96.59  E-value=1.2  Score=46.45  Aligned_cols=187  Identities=22%  Similarity=0.312  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~  308 (480)
                      -+.+.+++.|+++.+.||+++-.|..-.|  |.+-.-..++.++.+    ....+.   .++|+.-+-++++.++.+.+.
T Consensus       104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L----~~~~~~---~Gl~v~tev~d~~~~~~l~~~  176 (335)
T PRK08673        104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLL----AEAREE---TGLPIVTEVMDPRDVELVAEY  176 (335)
T ss_pred             CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHH----HHHHHH---cCCcEEEeeCCHHHHHHHHHh
Confidence            57899999999999999998877765433  322111124445433    333333   499999999999999999998


Q ss_pred             CCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-E
Q 038230          309 GAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII-I  386 (480)
Q Consensus       309 G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-l  386 (480)
                       +|++- |-+.+ ....+++.+++.+.||++--  |.-.|+                +.+...++.+...|-+  +++ +
T Consensus       177 -vd~lq-IgAr~~~N~~LL~~va~~~kPViLk~--G~~~ti----------------~E~l~A~e~i~~~GN~--~viL~  234 (335)
T PRK08673        177 -VDILQ-IGARNMQNFDLLKEVGKTNKPVLLKR--GMSATI----------------EEWLMAAEYILAEGNP--NVILC  234 (335)
T ss_pred             -CCeEE-ECcccccCHHHHHHHHcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEEEE
Confidence             88776 54443 24679999999999999843  322221                2334566677788875  544 4


Q ss_pred             ecCC-CCcc--ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          387 DPGL-GFSK--KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       387 DPgi-Gf~k--~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      .=|+ .|..  ...-++..+..++ .+++|+++=.|      +-.|     .|..... ++..|+..||+  |+-+|.
T Consensus       235 erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~s------H~~G-----~~~~v~~-~a~AAvA~GAdGliIE~H~  300 (335)
T PRK08673        235 ERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPS------HATG-----KRDLVEP-LALAAVAAGADGLIVEVHP  300 (335)
T ss_pred             ECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCC------CCCc-----cccchHH-HHHHHHHhCCCEEEEEecC
Confidence            5466 5622  2233455555553 46899865222      1112     2323222 24567788999  999998

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=96.58  E-value=0.17  Score=56.41  Aligned_cols=191  Identities=12%  Similarity=0.086  Sum_probs=116.3

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--C--------
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--T--------  296 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T--------  296 (480)
                      ++..++.++-+..|..+.+.|.+.|++|+.+|.+-+-....+++|+++..+-+.+.      +.+++.=  .        
T Consensus        14 ~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~------~~~l~~L~Rg~N~~G~~~   87 (582)
T TIGR01108        14 FATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP------NTPLQMLLRGQNLLGYRH   87 (582)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC------CCEEEEEEcccccccccc
Confidence            34467889999999999999999999998887764322223467888755433222      3444321  1        


Q ss_pred             C----CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHH
Q 038230          297 F----YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASEL  367 (480)
Q Consensus       297 ~----~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l  367 (480)
                      |    -.+-++.|+++|+++|+=....+..   ...++.+++.|..+..  +.+. .|..          +     .+++
T Consensus        88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~----------~-----~~~~  151 (582)
T TIGR01108        88 YADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-SPVH----------T-----LETY  151 (582)
T ss_pred             CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-CCCC----------C-----HHHH
Confidence            1    2334677899999998766555422   3467788888876553  2322 3421          1     1567


Q ss_pred             HHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230          368 YSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA  445 (480)
Q Consensus       368 ~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~  445 (480)
                      .+.++.+.++|..  .|.| |. .|.. ++.+-.++++.++ ..+.|+=+ |+              .+-.+...|-+..
T Consensus       152 ~~~~~~~~~~Gad--~I~i~Dt-~G~~-~P~~v~~lv~~lk~~~~~pi~~-H~--------------Hnt~Gla~An~la  212 (582)
T TIGR01108       152 LDLAEELLEMGVD--SICIKDM-AGIL-TPKAAYELVSALKKRFGLPVHL-HS--------------HATTGMAEMALLK  212 (582)
T ss_pred             HHHHHHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHHhCCCceEE-Ee--------------cCCCCcHHHHHHH
Confidence            7888888999986  4444 55 3332 2344566677763 34566422 11              1222334444566


Q ss_pred             HHHcCCcEEEcCC
Q 038230          446 GVLGGANIVRVHN  458 (480)
Q Consensus       446 a~~~Ga~IlRvHd  458 (480)
                      |++.||+++.+.=
T Consensus       213 AveaGa~~vd~ai  225 (582)
T TIGR01108       213 AIEAGADGIDTAI  225 (582)
T ss_pred             HHHhCCCEEEecc
Confidence            8888998887643

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR03586 PseI pseudaminic acid synthase

Probab=96.57  E-value=0.46  Score=49.27  Aligned_cols=185  Identities=17%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC--------C-C-----CC-CCCCCHHHHHHH-------HHHHHHHHHcCCcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS--------T-R-----PM-ATKISAEKELER-------LIPVLEAVLTMPEME  288 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--------t-r-----P~-a~~v~~~eE~~r-------l~~vi~~l~~~~~~~  288 (480)
                      .|.+.|.+.++...++|||.+=...-.        . .     ++ ....+.-+.+++       ...+.+.-++    .
T Consensus        14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~----~   89 (327)
T TIGR03586        14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKE----L   89 (327)
T ss_pred             ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHH----h
Confidence            478899999999999999975443110        0 0     00 000121122222       1222333333    3


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      ++++.-.-++.+.++...+.|++++.=-|+.-..-.+++.+++.|.||++-.  |.. |+                ++..
T Consensus        90 Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilst--G~~-t~----------------~Ei~  150 (327)
T TIGR03586        90 GLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMST--GIA-TL----------------EEIQ  150 (327)
T ss_pred             CCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEEC--CCC-CH----------------HHHH
Confidence            8999999999999999989999999855654434679999999999999733  432 32                3345


Q ss_pred             HHHHHHHHCCCCCCCEEEecCC-CCcc-ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIIIDPGL-GFSK-KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA  445 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~IilDPgi-Gf~k-~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~  445 (480)
                      ..++.+.+.|.+  +|+|==++ +|.. ...-|+..|..++ .+++|+  |.|=     +-+|          . .++..
T Consensus       151 ~Av~~i~~~g~~--~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pV--G~SD-----Ht~G----------~-~~~~a  210 (327)
T TIGR03586       151 EAVEACREAGCK--DLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPV--GLSD-----HTLG----------I-LAPVA  210 (327)
T ss_pred             HHHHHHHHCCCC--cEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCE--EeeC-----CCCc----------h-HHHHH
Confidence            677777888875  66663333 3432 2244566666663 467776  5541     1111          1 34567


Q ss_pred             HHHcCCcEEEcCC
Q 038230          446 GVLGGANIVRVHN  458 (480)
Q Consensus       446 a~~~Ga~IlRvHd  458 (480)
                      |+..||+||-.|=
T Consensus       211 Ava~GA~iIEkH~  223 (327)
T TIGR03586       211 AVALGACVIEKHF  223 (327)
T ss_pred             HHHcCCCEEEeCC
Confidence            8889999999996

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=96.57  E-value=0.16  Score=55.52  Aligned_cols=203  Identities=15%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             EEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCcCC
Q 038230          214 MGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT----MPEME  288 (480)
Q Consensus       214 mGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~----~~~~~  288 (480)
                      +=|+-.|+ |-.--.|..++.++-++.|+.+.+.|.|+|++|.    |.+    .++|.+.+..+.+.+.+    .....
T Consensus        85 V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~----s~~e~e~i~~i~~~~~~~~~~~~~l~  156 (503)
T PLN03228         85 VRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGF----PGS----SEEEFEAVKTIAKTVGNEVDEETGYV  156 (503)
T ss_pred             eEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHHHHHHHHHHHHhcccccccccccc
Confidence            44667764 5666667789999999999999999999999996    322    23555554433333211    00001


Q ss_pred             CCeEEEeCCCHHHHHHHHHc----CCCEEe---cCCCCC------CC--------chHHHHHHhcCCCEEEEcC-CCCCC
Q 038230          289 GKLVSVDTFYSKVASEAVGK----GAHIVN---DVSAGQ------LD--------PDMYKVVAGLKVPYVAMHM-RGDPS  346 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~----G~~iIN---dVsg~~------~d--------~~m~~l~~~~~~~vVlmh~-~g~p~  346 (480)
                      ....+.-..+.+-++.|+++    |++.|+   .+|-..      ..        .++++.++++|...|.... .+ . 
T Consensus       157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa-~-  234 (503)
T PLN03228        157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDG-G-  234 (503)
T ss_pred             eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccc-c-
Confidence            12345555666677888776    555555   222100      00        2467788888875333222 11 1 


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCc-EEEeeccccc
Q 038230          347 TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAP-ILIGPSRKRF  422 (480)
Q Consensus       347 ~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~P-il~G~SrKsf  422 (480)
                          +.     +     .+++.+.++.+.++|..  +|.+ |. +|.. ++.+..++++.++  .++.+ +.+++-    
T Consensus       235 ----Rt-----d-----~efl~~~~~~a~~~Gad--~I~l~DT-vG~~-tP~~v~~lV~~l~~~~~~~~~i~I~~H----  292 (503)
T PLN03228        235 ----RS-----D-----KEFLCKILGEAIKAGAT--SVGIADT-VGIN-MPHEFGELVTYVKANTPGIDDIVFSVH----  292 (503)
T ss_pred             ----cc-----C-----HHHHHHHHHHHHhcCCC--EEEEecC-CCCC-CHHHHHHHHHHHHHHhccccCceeEec----
Confidence                11     1     16778888899999986  4433 55 2322 2334455555552  22222 333321    


Q ss_pred             cccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          423 LGEICNRPSADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       423 i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                           .-   .++ +...|-+..|++.||+.+-+.
T Consensus       293 -----~H---ND~-GlAvANslaAi~aGa~~Vd~T  318 (503)
T PLN03228        293 -----CH---NDL-GLATANTIAGICAGARQVEVT  318 (503)
T ss_pred             -----cc---CCc-ChHHHHHHHHHHhCCCEEEEe
Confidence                 11   122 333344556778899888753

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=96.54  E-value=0.35  Score=50.55  Aligned_cols=167  Identities=14%  Similarity=0.165  Sum_probs=103.2

Q ss_pred             EEEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          213 VMGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK--ISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       213 imGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      -+=|+..|| |-+--.|.+++.++=++.|+.+.+.|.+.|++|--. .|..-|  -+.+|.++++    +.+..    ..
T Consensus        46 ~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i----~~~~~----~~  116 (347)
T PLN02746         46 FVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAV----RNLEG----AR  116 (347)
T ss_pred             ceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHH----HhccC----Cc
Confidence            355778775 677777888999999999999999999999999422 332111  1122223333    22211    12


Q ss_pred             CeEEEeCCCHHHHHHHHHcCCCEEecCCC-----------CCCC------chHHHHHHhcCCCEE--EEcCCCCCCcccc
Q 038230          290 KLVSVDTFYSKVASEAVGKGAHIVNDVSA-----------GQLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQN  350 (480)
Q Consensus       290 ~pISIDT~~~~v~~aaL~~G~~iINdVsg-----------~~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~  350 (480)
                      ++ .+ ..+.+-++.|++.|++.|+=+-.           ...+      .++++.++++|..+.  ++..-|-|..-. 
T Consensus       117 ~~-~l-~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r-  193 (347)
T PLN02746        117 FP-VL-TPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP-  193 (347)
T ss_pred             ee-EE-cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC-
Confidence            22 23 56999999999999997774411           1101      247788888998775  444444443211 


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230          351 EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       351 ~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l  406 (480)
                       .+          .+++.+.++.+.++|..  +|.| |. .|... +.+-.++++.+
T Consensus       194 -~~----------~~~l~~~~~~~~~~Gad--~I~l~DT-~G~a~-P~~v~~lv~~l  235 (347)
T PLN02746        194 -VP----------PSKVAYVAKELYDMGCY--EISLGDT-IGVGT-PGTVVPMLEAV  235 (347)
T ss_pred             -CC----------HHHHHHHHHHHHHcCCC--EEEecCC-cCCcC-HHHHHHHHHHH
Confidence             11          15677888889999987  5544 65 33322 44556666666

>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]

Probab=96.53  E-value=0.08  Score=52.23  Aligned_cols=246  Identities=20%  Similarity=0.217  Sum_probs=137.1

Q ss_pred             cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC
Q 038230          195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT  263 (480)
Q Consensus       195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~  263 (480)
                      ..++.+++.+++..   -+|.+.|-+      ||.+-+.        +|.+.|-+..+.| +++.|.      ..+|.-.
T Consensus        11 Q~V~eI~GvKiGGqpGEyPTvLagTI------FY~~HkIVeDe~kGiFDr~aAE~Li~~q-e~lsD~------TGNP~~~   77 (313)
T COG1962          11 QKVFEIAGVKIGGQPGEYPTVLAGTI------FYAKHKIVEDEKKGIFDREAAEALINTQ-EELSDK------TGNPHLV   77 (313)
T ss_pred             ceEEeeeceEeCCcCCCCchheeeee------eeccceeeeccccccccHHHHHHHHHHH-HHhccc------cCCchhh
Confidence            45566777666542   246666633      6654332        4555555555544 444442      1234211


Q ss_pred             -CCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHhcC-
Q 038230          264 -KIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAGLK-  333 (480)
Q Consensus       264 -~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~~~-  333 (480)
                       .+. .+|-+.+.   |+-+.+.   ++.|+-|||...++=.+|.++    |   ..+-|||+..- ++.=++.+++++ 
T Consensus        78 ~i~G~t~Eai~kY---iDfvadV---tDsPfliDSt~gevr~aaak~a~EvGladR~iyNSIn~si-~~~EieaL~eSd~  150 (313)
T COG1962          78 QIFGETPEAIIKY---IDFVADV---TDSPFLIDSTEGEVRAAAAKYASEVGLADRAIYNSINASI-EDAEIEALAESDV  150 (313)
T ss_pred             hhhcCCHHHHHHH---HHhheec---ccCceeecccchHHHHHHHhhhhhhchhhhhhhhccCccc-cHHHHHHHHhccc
Confidence             111 12334444   3334555   588999999999998888875    4   66999999876 455567777765 


Q ss_pred             -CCEEEEcCCCCCCccccccccchhhHHHHHHHH-HHHHHHHHHHCCCCCCCEEEecCC-----CCccChhHHHHHHHhc
Q 038230          334 -VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE-LYSKVRDAELSGIPAWRIIIDPGL-----GFSKKAEHNLDILLGL  406 (480)
Q Consensus       334 -~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~-l~~~i~~a~~~Gi~~~~IilDPgi-----Gf~k~~~~~~~~lr~l  406 (480)
                       +++||..+--+|.. ..+     -++++.-... -+-.++.+.++||.  +-++|+-+     |-+......+ .++  
T Consensus       151 eaaIVL~fn~md~sv-~gr-----l~ile~g~g~~~kGmLeiae~cGI~--~pliD~avtplg~Gagaa~r~~~-~vK--  219 (313)
T COG1962         151 EAAIVLAFNPMDPSV-EGR-----LQILEKGAGTKEKGMLEIAEECGIK--KPLIDTAVTPLGSGAGAAVRATI-AVK--  219 (313)
T ss_pred             cceeEEEecCCCcch-hhH-----HHHHHhccccchhhHHHHHHHhCCC--ccccccccccCCCCcchhhhhhh-hhH--
Confidence             67887665323321 111     1111111101 12346788999998  88999943     2222222222 122  


Q ss_pred             ccCCCcEEEeeccc----cccccccCCC-Cc-CcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230          407 AASHAPILIGPSRK----RFLGEICNRP-SA-DERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       407 ~~~g~Pil~G~SrK----sfi~~v~g~~-~~-~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~  474 (480)
                      ..+|+|+=-|+-|.    .|+.+..+.. ++ .-.++++   ..+.+..|.|++.-   .|.+..-.|+.|.+.+..
T Consensus       220 ~k~G~PvGsg~HN~psaWdwlr~~~kk~~e~~~~~Dvgs---n~vq~~a~~DfvLyGPIEna~~vfPa~amvD~~i~  293 (313)
T COG1962         220 AKLGLPVGSGIHNAPSAWDWLREFKKKLPEAGAVCDVGS---NLVQQIAGGDFVLYGPIENARMVFPAVAMVDIMIA  293 (313)
T ss_pred             HhcCCccCcccccCchHHHHHHHHHhhCccccccccHHH---HHHHHHhcCCeEEecchhhhhhhhhHHHHHHHHHH
Confidence            24799997777664    2333333321 11 1122333   34566678888764   456778888999998753

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=96.52  E-value=0.14  Score=55.97  Aligned_cols=191  Identities=14%  Similarity=0.125  Sum_probs=117.6

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----------EeC
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----------VDT  296 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----------IDT  296 (480)
                      +...++.++.+..|..+-+.|.+.|++||.+|.+.+-....|++|+|+..+-+.+.      +.++.          .-.
T Consensus        20 ~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~------nt~lqmL~Rg~N~vGy~~   93 (499)
T PRK12330         20 MATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMP------NSRLQMLLRGQNLLGYRH   93 (499)
T ss_pred             cCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC------CCeEEEEEcccccCCccC
Confidence            33457889999999999999999999999988875444455788999865554443      23333          233


Q ss_pred             CC----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHH
Q 038230          297 FY----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASEL  367 (480)
Q Consensus       297 ~~----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l  367 (480)
                      +.    ..-++.|.++|.+++.=..+.++-   ...++.+++.|.-+  .++.+. .|..          +     .+++
T Consensus        94 y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~----------t-----~e~~  157 (499)
T PRK12330         94 YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIH----------T-----VEGF  157 (499)
T ss_pred             cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCC----------C-----HHHH
Confidence            33    345667777899987655555421   34567777777643  222221 2311          0     1667


Q ss_pred             HHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cC--CCcEEEeeccccccccccCCCCcCcccHHHHHHH
Q 038230          368 YSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-AS--HAPILIGPSRKRFLGEICNRPSADERDPATIASI  443 (480)
Q Consensus       368 ~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~--g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~  443 (480)
                      .+.++.+.++|+.  .|.| |. .|..+ +.+..++++.++ ..  ++|+=+ |.              .+..+...+-+
T Consensus       158 ~~~a~~l~~~Gad--~I~IkDt-aGll~-P~~~~~LV~~Lk~~~~~~ipI~~-H~--------------Hnt~GlA~An~  218 (499)
T PRK12330        158 VEQAKRLLDMGAD--SICIKDM-AALLK-PQPAYDIVKGIKEACGEDTRINL-HC--------------HSTTGVTLVSL  218 (499)
T ss_pred             HHHHHHHHHcCCC--EEEeCCC-ccCCC-HHHHHHHHHHHHHhCCCCCeEEE-Ee--------------CCCCCcHHHHH
Confidence            7888888999986  4443 54 33332 344566777763 33  567643 11              11223344445


Q ss_pred             HHHHHcCCcEEEcCC
Q 038230          444 TAGVLGGANIVRVHN  458 (480)
Q Consensus       444 ~~a~~~Ga~IlRvHd  458 (480)
                      ..|++.||+++.+-=
T Consensus       219 laAieAGad~vDtai  233 (499)
T PRK12330        219 MKAIEAGVDVVDTAI  233 (499)
T ss_pred             HHHHHcCCCEEEeec
Confidence            568889998887643

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=96.51  E-value=1.1  Score=46.58  Aligned_cols=187  Identities=21%  Similarity=0.157  Sum_probs=116.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC----CCCCCC-----------CCCHHHHH-------HHHHHHHHHHHcCCcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS----TRPMAT-----------KISAEKEL-------ERLIPVLEAVLTMPEME  288 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS----trP~a~-----------~v~~~eE~-------~rl~~vi~~l~~~~~~~  288 (480)
                      .|.+-|.+..+...++|||.+=+=--.    +.+...           ..+.-+.+       +++.++.+..++.    
T Consensus        13 Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~----   88 (329)
T TIGR03569        13 GSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK----   88 (329)
T ss_pred             CcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh----
Confidence            478889999999999999977542100    000000           00111111       2333334444443    


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      ++++.-.-++.+.++...+.|++++-=-|+.-.+-.+++.+++.|-||++..  |.. |+                ++..
T Consensus        89 Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt--Gma-tl----------------~Ei~  149 (329)
T TIGR03569        89 GIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILST--GMA-TL----------------EEIE  149 (329)
T ss_pred             CCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEEC--CCC-CH----------------HHHH
Confidence            8999999999999999999999998855544345779999999999998843  432 22                3445


Q ss_pred             HHHHHHHHCCCCCCCEEE-ecCCCCc-cChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIII-DPGLGFS-KKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA  445 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~Iil-DPgiGf~-k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~  445 (480)
                      ..++.+.+.|.+..+|+| =-..++. ....-|+..|..++ .+++|+  |.|=     +-          .+. .++..
T Consensus       150 ~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pV--G~Sd-----Ht----------~G~-~~~~a  211 (329)
T TIGR03569       150 AAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPV--GYSD-----HT----------LGI-EAPIA  211 (329)
T ss_pred             HHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCE--EECC-----CC----------ccH-HHHHH
Confidence            777778888975324655 2223332 22345666666663 467765  6651     11          112 34567


Q ss_pred             HHHcCCcEEEcCC
Q 038230          446 GVLGGANIVRVHN  458 (480)
Q Consensus       446 a~~~Ga~IlRvHd  458 (480)
                      |+..||+||-.|-
T Consensus       212 AvalGA~iIEkH~  224 (329)
T TIGR03569       212 AVALGATVIEKHF  224 (329)
T ss_pred             HHHcCCCEEEeCC
Confidence            8889999999997

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=96.49  E-value=0.16  Score=54.89  Aligned_cols=186  Identities=14%  Similarity=0.153  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE---E-------eCCCHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS---V-------DTFYSK  300 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS---I-------DT~~~~  300 (480)
                      ++.++.+..|..+-+.|...|+++|.+|..-+-....|..|+|+..+-+.+.      +.++.   .       -.|.-+
T Consensus        32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~------nt~lqmLlRG~n~vgy~~ypdd  105 (468)
T PRK12581         32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLP------NTRLQMLLRGQNLLGYRHYADD  105 (468)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC------CCceeeeeccccccCccCCcch
Confidence            7889999999999999999999999888774334445677998765554443      23332   1       111124


Q ss_pred             H----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHHHHHHHHHHHH
Q 038230          301 V----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKV  371 (480)
Q Consensus       301 v----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i  371 (480)
                      |    ++.|.+.|.+++--.+..++-   ...++.+++.|..+.  ++++. .|..               -.+++.+.+
T Consensus       106 vv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~-sp~~---------------t~~y~~~~a  169 (468)
T PRK12581        106 IVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT-SPVH---------------TLNYYLSLV  169 (468)
T ss_pred             HHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe-CCcC---------------cHHHHHHHH
Confidence            4    555666799998877777632   346778888887643  44443 3421               126778888


Q ss_pred             HHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHc
Q 038230          372 RDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG  449 (480)
Q Consensus       372 ~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~  449 (480)
                      +.+.++|..  .|.| |. .|.. ++.+-.++++.++ ..++|+=+ |+              .+..+...+-+..|++.
T Consensus       170 ~~l~~~Gad--~I~IkDt-aG~l-~P~~v~~Lv~alk~~~~~pi~~-H~--------------Hnt~GlA~An~laAieA  230 (468)
T PRK12581        170 KELVEMGAD--SICIKDM-AGIL-TPKAAKELVSGIKAMTNLPLIV-HT--------------HATSGISQMTYLAAVEA  230 (468)
T ss_pred             HHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHhccCCeEEE-Ee--------------CCCCccHHHHHHHHHHc
Confidence            889999986  5544 55 2322 2344456666663 45666532 11              12223344445667788


Q ss_pred             CCcEEEcC
Q 038230          450 GANIVRVH  457 (480)
Q Consensus       450 Ga~IlRvH  457 (480)
                      ||+++.+-
T Consensus       231 Gad~vD~a  238 (468)
T PRK12581        231 GADRIDTA  238 (468)
T ss_pred             CCCEEEee
Confidence            88887664

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.43  E-value=0.047  Score=51.73  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--CH--HHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--YS--KVASEAV  306 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~~--~v~~aaL  306 (480)
                      .+.+++.+.++.+.+. .++|.+|..-..+..            ...++.+++..  +++|+.+|..  ++  ..++++.
T Consensus        10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g------------~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~   74 (202)
T cd04726          10 LDLEEALELAKKVPDG-VDIIEAGTPLIKSEG------------MEAVRALREAF--PDKIIVADLKTADAGALEAEMAF   74 (202)
T ss_pred             CCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC------------HHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHH
Confidence            5688999999999888 999999863322111            24566666542  3778887622  22  3578899


Q ss_pred             HcCCCEEecCCCCC--CCchHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230          307 GKGAHIVNDVSAGQ--LDPDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR  383 (480)
Q Consensus       307 ~~G~~iINdVsg~~--~d~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~  383 (480)
                      ++|+++|.--....  ...++++.++++|+.+++ ++.-.+|                      .+..+ +.+.|.+  -
T Consensus        75 ~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~----------------------~e~~~-~~~~~~d--~  129 (202)
T cd04726          75 KAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDP----------------------EKRAK-LLKLGVD--I  129 (202)
T ss_pred             hcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCH----------------------HHHHH-HHHCCCC--E
Confidence            99999998332111  125688999999998886 3542222                      12222 5566776  5


Q ss_pred             EEEecCCCCccC-hhHHHHHHHhcc-cCCCcEEEe
Q 038230          384 IIIDPGLGFSKK-AEHNLDILLGLA-ASHAPILIG  416 (480)
Q Consensus       384 IilDPgiGf~k~-~~~~~~~lr~l~-~~g~Pil~G  416 (480)
                      +.+.|++.-+.. .....+.+++++ ..++|++++
T Consensus       130 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  164 (202)
T cd04726         130 VILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVA  164 (202)
T ss_pred             EEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEE
Confidence            677786522111 223345566553 267888764

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.34  E-value=0.11  Score=50.27  Aligned_cols=157  Identities=15%  Similarity=0.101  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--  311 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--  311 (480)
                      +++.+.|++..+.|+|.|-||| |+.     ++    .+.+.++++.+++.   +++|+-+-=.+++.+..    ++|  
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGG-S~g-----vt----~~~~~~~v~~ik~~---~~lPvilfp~~~~~i~~----~aD~~   73 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGG-SLG-----IV----ESNLDQTVKKIKKI---TNLPVILFPGNVNGLSR----YADAV   73 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcC-cCC-----CC----HHHHHHHHHHHHhh---cCCCEEEECCCccccCc----CCCEE
Confidence            5677788899999999999997 322     22    23445567777875   48999987666665543    344  


Q ss_pred             EEecCCCCCCCc--------hHHHHHHhcCC-----CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC
Q 038230          312 IVNDVSAGQLDP--------DMYKVVAGLKV-----PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG  378 (480)
Q Consensus       312 iINdVsg~~~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G  378 (480)
                      ++.++-... ++        +-++++++++.     +|+++...+.-....+ .+.-.+...++    ...-...++.+|
T Consensus        74 ~~~sllns~-~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~-a~~ip~~~~e~----~~~~a~aa~~~G  147 (205)
T TIGR01769        74 FFMSLLNSA-DTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGK-AREIPYNKPEI----AAAYCLAAKYFG  147 (205)
T ss_pred             EEEEeecCC-CcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecC-cccCCCCCHHH----HHHHHHHHHHcC
Confidence            333432222 23        24556688886     6666665432111100 00000111222    234445667899


Q ss_pred             CCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEee
Q 038230          379 IPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGP  417 (480)
Q Consensus       379 i~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~  417 (480)
                      ++  -|+++=+-|+.+.  .+.++++++ +..+.|+.+|-
T Consensus       148 ~~--~i~Le~~sGa~~~--v~~e~i~~Vk~~~~~Pv~vGG  183 (205)
T TIGR01769       148 MK--WVYLEAGSGASYP--VNPETISLVKKASGIPLIVGG  183 (205)
T ss_pred             CC--EEEEEcCCCCCCC--CCHHHHHHHHHhhCCCEEEeC
Confidence            98  8999988888433  235566666 34689999984

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=96.27  E-value=0.55  Score=51.59  Aligned_cols=151  Identities=18%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCHH
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYSK  300 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~~  300 (480)
                      |-+---|..++.++-++.|+.+.+.|.+.|++|..+..|        .|++.+..+.+..      .+..|+ .-..+.+
T Consensus        14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~--------~d~~~v~~i~~~~------~~~~i~a~~r~~~~   79 (513)
T PRK00915         14 DGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP--------GDFEAVKRIARTV------KNSTVCGLARAVKK   79 (513)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh--------HHHHHHHHHHhhC------CCCEEEEEccCCHH
Confidence            333334566899999999999999999999999643322        3455543333222      133443 3335677


Q ss_pred             HHHHHH----HcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhH
Q 038230          301 VASEAV----GKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDV  359 (480)
Q Consensus       301 v~~aaL----~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v  359 (480)
                      -++.++    +.|++.|.=.....         ..        .+.++.++++|..|......+...      +      
T Consensus        80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~------d------  147 (513)
T PRK00915         80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRT------D------  147 (513)
T ss_pred             HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCC------C------
Confidence            788888    45766555322211         00        246778888898877655443211      1      


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230          360 CKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       360 ~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l  406 (480)
                          .+++.+.++.+.++|..  .|.| |. +|.. ++.+..++++.+
T Consensus       148 ----~~~l~~~~~~~~~~Ga~--~i~l~DT-vG~~-~P~~~~~~i~~l  187 (513)
T PRK00915        148 ----LDFLCRVVEAAIDAGAT--TINIPDT-VGYT-TPEEFGELIKTL  187 (513)
T ss_pred             ----HHHHHHHHHHHHHcCCC--EEEEccC-CCCC-CHHHHHHHHHHH
Confidence                16777888889999975  4444 43 3332 344455566665

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.23  E-value=0.049  Score=52.97  Aligned_cols=97  Identities=15%  Similarity=0.334  Sum_probs=75.1

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      -.++.|+...           +.+++++.++.+.+.|.++|.|+..+  |+         ..   ..|+.+++.+  .++
T Consensus        15 ~~~iaV~r~~-----------~~~~a~~i~~al~~~Gi~~iEitl~~--~~---------~~---~~I~~l~~~~--p~~   67 (212)
T PRK05718         15 GPVVPVIVIN-----------KLEDAVPLAKALVAGGLPVLEVTLRT--PA---------AL---EAIRLIAKEV--PEA   67 (212)
T ss_pred             CCEEEEEEcC-----------CHHHHHHHHHHHHHcCCCEEEEecCC--cc---------HH---HHHHHHHHHC--CCC
Confidence            4567776543           57999999999999999999999632  32         11   2455556543  478


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      .|..+| .+++.++.|.++|++++-+-.   .++++++.+++++++++
T Consensus        68 ~IGAGTVl~~~~a~~a~~aGA~FivsP~---~~~~vi~~a~~~~i~~i  112 (212)
T PRK05718         68 LIGAGTVLNPEQLAQAIEAGAQFIVSPG---LTPPLLKAAQEGPIPLI  112 (212)
T ss_pred             EEEEeeccCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence            888888 578999999999999996543   36899999999999988

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=96.20  E-value=1.1  Score=46.16  Aligned_cols=207  Identities=17%  Similarity=0.229  Sum_probs=131.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK  308 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~  308 (480)
                      -.|.+.-+++..++.+.|+||+=+-.    |+      .|.-+    .++.|++.   .++|+--|- |++..+..+.+.
T Consensus        32 T~Dv~aTv~QI~~L~~aG~dIVRvtv----~~------~e~A~----A~~~Ik~~---~~vPLVaDiHf~~rla~~~~~~   94 (361)
T COG0821          32 TADVEATVAQIKALERAGCDIVRVTV----PD------MEAAE----ALKEIKQR---LNVPLVADIHFDYRLALEAAEC   94 (361)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEec----CC------HHHHH----HHHHHHHh---CCCCEEEEeeccHHHHHHhhhc
Confidence            35899999999999999999999965    22      12222    35566666   489999985 788999999999


Q ss_pred             CCCEEecCCCCCC---C--chHHHHHHhcCCCEEEEcCCCC-CCccccccccch-hhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          309 GAHIVNDVSAGQL---D--PDMYKVVAGLKVPYVAMHMRGD-PSTMQNEENLQY-DDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       309 G~~iINdVsg~~~---d--~~m~~l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~-~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      |++-+- |+.++.   +  .++.+.|+++|.|+=+=-+-|. .+...+    .| ....+.+.+.....++.+++.|+. 
T Consensus        95 g~~k~R-INPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~----ky~~pt~ealveSAl~~a~~~e~l~f~-  168 (361)
T COG0821          95 GVDKVR-INPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE----KYGGPTPEALVESALEHAELLEELGFD-  168 (361)
T ss_pred             CcceEE-ECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHH----HhcCCCHHHHHHHHHHHHHHHHHCCCC-
Confidence            988654 444442   2  4688999999999977555442 333222    13 223455667777888999999998 


Q ss_pred             CCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCCh
Q 038230          382 WRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHNI  459 (480)
Q Consensus       382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHdV  459 (480)
                       +|++--   =+.+....++..+.| +..++|+=+|+.--       |..  ..-..-+.+....++..| .|=+||-=.
T Consensus       169 -~i~iS~---K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEA-------G~~--~~G~VkSa~alg~LL~eGIGDTIRVSLt  235 (361)
T COG0821         169 -DIKVSV---KASDVQLMVAAYRLLAKRCDYPLHLGVTEA-------GMG--FKGIVKSAAALGALLSEGIGDTIRVSLT  235 (361)
T ss_pred             -cEEEEE---EcCCHHHHHHHHHHHHHhcCCCcccceecc-------cCc--ccceehHHHHHHHHHHhcCCceEEEecC
Confidence             888753   123344445555555 46799998887411       211  112223344445555566 688887543


Q ss_pred             HHHHHHHHHHHHH
Q 038230          460 RDNLDAVKLCDSM  472 (480)
Q Consensus       460 ~e~~~al~~~~ai  472 (480)
                      .+-.+-+++++.|
T Consensus       236 ~~P~~EV~V~~eI  248 (361)
T COG0821         236 ADPVEEVKVAQEI  248 (361)
T ss_pred             CCchhhhHHHHHH
Confidence            3333334444443

>PRK09389 (R)-citramalate synthase; Provisional

Probab=95.90  E-value=0.98  Score=49.36  Aligned_cols=159  Identities=16%  Similarity=0.138  Sum_probs=95.5

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230          222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV  301 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v  301 (480)
                      |-.---|..++.++-++.|+.+.+.|.++|++|..+        +.++|++.+..+.+.   ..  .....+.=....+-
T Consensus        12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~--------~~~~d~e~v~~i~~~---~~--~~~i~a~~r~~~~d   78 (488)
T PRK09389         12 DGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAI--------TSEGEREAIKAVTDE---GL--NAEICSFARAVKVD   78 (488)
T ss_pred             CcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc--------CCHHHHHHHHHHHhc---CC--CcEEEeecccCHHH
Confidence            444444667899999999999999999999999633        234566665444421   11  11223333445788


Q ss_pred             HHHHHHcCCCEEecCCCCCC---------C--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHH
Q 038230          302 ASEAVGKGAHIVNDVSAGQL---------D--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVA  364 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~~---------d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~  364 (480)
                      +++|++.|++.|.-.-....         .        .++++.++++|..+.+....+ +.     .+          .
T Consensus        79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~-~r-----~~----------~  142 (488)
T PRK09389         79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDA-SR-----AD----------L  142 (488)
T ss_pred             HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC-CC-----CC----------H
Confidence            99999999887654332210         0        134567778887766644432 11     11          1


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcE
Q 038230          365 SELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPI  413 (480)
Q Consensus       365 ~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pi  413 (480)
                      +++.+.++.+.++|.+  +|.| |. .|. -++.+..++++.++ ..++|+
T Consensus       143 ~~l~~~~~~~~~~Ga~--~i~l~DT-vG~-~~P~~~~~lv~~l~~~~~v~l  189 (488)
T PRK09389        143 DFLKELYKAGIEAGAD--RICFCDT-VGI-LTPEKTYELFKRLSELVKGPV  189 (488)
T ss_pred             HHHHHHHHHHHhCCCC--EEEEecC-CCC-cCHHHHHHHHHHHHhhcCCeE
Confidence            6777888888899986  5544 43 332 22344455666662 334443

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.83  E-value=0.66  Score=45.23  Aligned_cols=137  Identities=21%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      +.++.+-..|+-.|-    ..+.+..+..+++.++.||+.+|+-..   .+.  .+.++-.+.+..+.+..++.    ++
T Consensus        57 ~~i~~~~~~~~i~~p----~~~~~~~~~~v~~a~~~Ga~~v~~~~~---~~~--~~~~~~~~~i~~v~~~~~~~----g~  123 (235)
T cd00958          57 PLIVKLNGSTSLSPK----DDNDKVLVASVEDAVRLGADAVGVTVY---VGS--EEEREMLEELARVAAEAHKY----GL  123 (235)
T ss_pred             cEEEEECCCCCCCCC----CCCchhhhcCHHHHHHCCCCEEEEEEe---cCC--chHHHHHHHHHHHHHHHHHc----CC
Confidence            456666555665554    234455666788899999998877531   111  12333344454445444443    88


Q ss_pred             eEEEeCCC----------HHHHHH----HHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCC-CCcccccccc
Q 038230          291 LVSVDTFY----------SKVASE----AVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGD-PSTMQNEENL  354 (480)
Q Consensus       291 pISIDT~~----------~~v~~a----aL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~-p~~~~~~~~~  354 (480)
                      |+-||.+.          ++.++.    |.+.|+|+|-- +.. .+ +.+-++++....|+++.-  |. ..|.      
T Consensus       124 ~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~-~~~-~~~~~~~~i~~~~~~pvv~~G--G~~~~~~------  193 (235)
T cd00958         124 PLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT-KYT-GDAESFKEVVEGCPVPVVIAG--GPKKDSE------  193 (235)
T ss_pred             CEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe-cCC-CCHHHHHHHHhcCCCCEEEeC--CCCCCCH------
Confidence            88888754          455554    77779999863 322 23 456666666778876653  32 1221      


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                                +.+.+.+..+.++|..
T Consensus       194 ----------~~~l~~~~~~~~~Ga~  209 (235)
T cd00958         194 ----------EEFLKMVYDAMEAGAA  209 (235)
T ss_pred             ----------HHHHHHHHHHHHcCCc
Confidence                      2345667777888886

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK07094 biotin synthase; Provisional

Probab=95.67  E-value=0.78  Score=46.93  Aligned_cols=108  Identities=11%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             CCcEEEEEEecCCC-----CCCC-----C--Ccc-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230          209 LKTSVMGILNLTPD-----SFSD-----G--GKF-QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       209 ~~~~imGIlN~tpD-----SFsd-----g--g~~-~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~  275 (480)
                      .+..+.|++|+|.=     +|..     +  .++ .+++++++.++.+.+.|+..+-+.+.. .|..       ..+++.
T Consensus        35 ~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~-~~~~-------~~~~l~  106 (323)
T PRK07094         35 DEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGE-DPYY-------TDEKIA  106 (323)
T ss_pred             CEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCC-------CHHHHH
Confidence            45677889998842     2221     2  233 489999999999999999999986432 1211       145677


Q ss_pred             HHHHHHHcCCcCCCCe--EEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHH
Q 038230          276 PVLEAVLTMPEMEGKL--VSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKV  328 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~p--ISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l  328 (480)
                      .+++.|++.   .++.  +++-+...+.+++--++|++.++ ++-+..++++++.
T Consensus       107 ~l~~~i~~~---~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~-~glEs~~~~~~~~  157 (323)
T PRK07094        107 DIIKEIKKE---LDVAITLSLGERSYEEYKAWKEAGADRYL-LRHETADKELYAK  157 (323)
T ss_pred             HHHHHHHcc---CCceEEEecCCCCHHHHHHHHHcCCCEEE-eccccCCHHHHHH
Confidence            778888864   2444  45555678888887778988887 6554444555443

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=95.65  E-value=2.7  Score=42.03  Aligned_cols=193  Identities=15%  Similarity=0.132  Sum_probs=118.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCC---------CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGA---------QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK  300 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~  300 (480)
                      -+.+.+++.|+.+.+.||.+ .+|+         .-|.|.+ .....++=++.    ++.+++.   .++||.-|-.+++
T Consensus        13 Es~e~~~~~A~~lk~~~~~~-~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~i----L~~vk~~---~glpvvTeV~~~~   84 (258)
T TIGR01362        13 ESEDHALRVAEKLKELTSKL-GVPFIFKSSFDKANRSSIHSFRGPGLEEGLKI----LQKVKEE---FGVPILTDVHESS   84 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHhc-CCCeEEecccCCCCCCCCCCCCCCCHHHHHHH----HHHHHHH---hCCceEEEeCCHH
Confidence            47788999999999988865 2321         2344432 22332344443    4566666   4999999999999


Q ss_pred             HHHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230          301 VASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI  379 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi  379 (480)
                      -++.+.++ +||+- |-+.+- .-+++.-+++.+-+|.+  .+|.--+.                +.+...+++..+.|.
T Consensus        85 ~~~~vae~-vDilQ-IgArn~rn~~LL~a~g~t~kpV~l--KrG~~~t~----------------~e~l~aaeyi~~~Gn  144 (258)
T TIGR01362        85 QCEPVAEV-VDIIQ-IPAFLCRQTDLLVAAAKTGRIVNV--KKGQFLSP----------------WDMKNVVEKVLSTGN  144 (258)
T ss_pred             HHHHHHhh-CcEEE-eCchhcchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCC
Confidence            99999999 88886 555331 24678888888877765  34432221                234466778888998


Q ss_pred             CCCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeecccc-ccccccCCCCcCcccHHHHHHHHHHHHcCCc-
Q 038230          380 PAWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKR-FLGEICNRPSADERDPATIASITAGVLGGAN-  452 (480)
Q Consensus       380 ~~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKs-fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~-  452 (480)
                      +  +|++=- |+-|+.+.    ..++-++++   .++|+++=.|..- .=|. .|....-+|...... +-.|+..|+| 
T Consensus       145 ~--~viLcERG~tf~y~r~~~D~~~ip~~k~---~~~PVi~DpSHsvq~pg~-~g~~s~G~r~~v~~l-a~AAvA~GaDG  217 (258)
T TIGR01362       145 K--NILLCERGTSFGYNNLVVDMRSLPIMRE---LGCPVIFDATHSVQQPGG-LGGASGGLREFVPTL-ARAAVAVGIDG  217 (258)
T ss_pred             C--cEEEEeCCCCcCCCCcccchhhhHHHHh---cCCCEEEeCCccccCCCC-CCCCCCCcHHHHHHH-HHHHHHhCCCE
Confidence            6  777655 87674321    234555554   4899999776430 0000 111112345554332 3345556666 


Q ss_pred             -EEEcCC
Q 038230          453 -IVRVHN  458 (480)
Q Consensus       453 -IlRvHd  458 (480)
                       ++-||.
T Consensus       218 l~iEvHp  224 (258)
T TIGR01362       218 LFMETHP  224 (258)
T ss_pred             EEEEeCC
Confidence             888997

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.43  E-value=3.3  Score=41.57  Aligned_cols=193  Identities=17%  Similarity=0.164  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCC---------CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGA---------QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK  300 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~  300 (480)
                      -+.|.+++.|+.+.+.|+.+ .+|+         .-|.|.+ .....+|=++.    ++.+++.   .++||--|-.+++
T Consensus        21 Es~e~~~~~A~~lk~~~~~~-~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~----L~~vk~~---~GlpvvTeV~~~~   92 (264)
T PRK05198         21 ESRDLALRIAEHLKEITDKL-GIPYVFKASFDKANRSSIHSFRGPGLEEGLKI----LQEVKET---FGVPVLTDVHEPE   92 (264)
T ss_pred             cCHHHHHHHHHHHHHHHHhc-CCCeEEeccccCCCCCCCCCCCCCChHHHHHH----HHHHHHH---HCCceEEEeCCHH
Confidence            57888999999999999884 4652         2344432 22232344444    4566666   4999999999999


Q ss_pred             HHHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230          301 VASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI  379 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi  379 (480)
                      -++.+.++ +||+- |-+.+- .-+++.-+++.+.+|.+  .+|.--++                +.+...+++..+.|.
T Consensus        93 ~~~~v~~~-~DilQ-IgArn~rn~~LL~a~g~t~kpV~l--KrG~~~t~----------------~e~~~aaeyi~~~Gn  152 (264)
T PRK05198         93 QAAPVAEV-VDVLQ-IPAFLCRQTDLLVAAAKTGKVVNI--KKGQFLAP----------------WDMKNVVDKVREAGN  152 (264)
T ss_pred             HHHHHHhh-CcEEE-ECchhcchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCC
Confidence            99999998 88886 554331 24688888888877765  34433222                234466778888898


Q ss_pred             CCCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeeccccc-cccccCCCCcCcccHHHHHHHHHHHHcCCc-
Q 038230          380 PAWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKRF-LGEICNRPSADERDPATIASITAGVLGGAN-  452 (480)
Q Consensus       380 ~~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKsf-i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~-  452 (480)
                      +  +|++=- |+-|+.+.    ..++-+++   .+++|+++=.|..-- -|. .|....-+|...... +-.|+..|+| 
T Consensus       153 ~--~vilcERG~tf~y~r~~~D~~~vp~~k---~~~lPVi~DpSHsvq~pg~-~~~~s~G~r~~v~~l-a~AAvA~GadG  225 (264)
T PRK05198        153 D--KIILCERGTSFGYNNLVVDMRGLPIMR---ETGAPVIFDATHSVQLPGG-QGGSSGGQREFVPVL-ARAAVAVGVAG  225 (264)
T ss_pred             C--eEEEEeCCCCcCCCCeeechhhhHHHh---hCCCCEEEeCCccccCCCC-CCCCCCCcHHHHHHH-HHHHHHcCCCE
Confidence            6  777644 88774431    23344444   467999997764300 000 011112345554332 2345556665 


Q ss_pred             -EEEcCC
Q 038230          453 -IVRVHN  458 (480)
Q Consensus       453 -IlRvHd  458 (480)
                       ++-||.
T Consensus       226 l~iEvHp  232 (264)
T PRK05198        226 LFIETHP  232 (264)
T ss_pred             EEEEeCC
Confidence             888997

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.40  E-value=3.5  Score=41.78  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=120.3

Q ss_pred             CCHHHHHHHHHHHHHc----CCCEEEeCCCC----CCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230          231 QSVEAAVSQVRLMISE----GADMIDIGAQS----TRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV  301 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~----GAdiIDIG~eS----trP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v  301 (480)
                      -+.|.+++.|+.+.+.    |+.+|==|+--    |.|.+- ....+|=++.    ++.+++.   .++||--|--+++-
T Consensus        27 Es~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~i----L~~vk~~---~glpvvTeV~~~~q   99 (290)
T PLN03033         27 ESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKI----LEKVKVA---YDLPIVTDVHESSQ   99 (290)
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHH----HHHHHHH---HCCceEEeeCCHHH
Confidence            5778899999998886    99888777533    445432 3332444443    4566666   49999999999999


Q ss_pred             HHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          302 ASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                      ++.+.++ +||+- |-+.+- .-+++.-+++.|.+|.+  .+|.--++                +.+...++++.+.|.+
T Consensus       100 ~~~vae~-~DilQ-IgAr~~rqtdLL~a~~~tgkpV~l--KkGq~~t~----------------~e~~~aaeki~~~GN~  159 (290)
T PLN03033        100 CEAVGKV-ADIIQ-IPAFLCRQTDLLVAAAKTGKIINI--KKGQFCAP----------------SVMRNSAEKVRLAGNP  159 (290)
T ss_pred             HHHHHhh-CcEEe-eCcHHHHHHHHHHHHHccCCeEEe--CCCCCCCH----------------HHHHHHHHHHHHcCCC
Confidence            9999998 58885 554431 14567777888876665  44433222                3344667788889986


Q ss_pred             CCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeeccccc-ccc----ccCCCCcCcccHHHHHHHHHHHHcC
Q 038230          381 AWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKRF-LGE----ICNRPSADERDPATIASITAGVLGG  450 (480)
Q Consensus       381 ~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKsf-i~~----v~g~~~~~~r~~~t~a~~~~a~~~G  450 (480)
                        +|++=- |+-|+.+.    ..++.+++   ..++|+++=.|.--- -|.    -.|....-+|...... +-.|+..|
T Consensus       160 --~viLcERG~tFgy~~lv~D~r~ip~mk---~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~l-arAAvA~G  233 (290)
T PLN03033        160 --NVMVCERGTMFGYNDLIVDPRNLEWMR---EANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCI-ARTAVAVG  233 (290)
T ss_pred             --cEEEEeCCCCcCCCCcccchhhhHHHH---hcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHH-HHHHHHhC
Confidence              777655 88775431    23344444   479999997775200 000    0011112346554332 33455556


Q ss_pred             Cc--EEEcCC
Q 038230          451 AN--IVRVHN  458 (480)
Q Consensus       451 a~--IlRvHd  458 (480)
                      +|  ++-||.
T Consensus       234 aDGlfiEvHp  243 (290)
T PLN03033        234 VDGIFMEVHD  243 (290)
T ss_pred             CCEEEEEecC
Confidence            65  888998

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=95.37  E-value=2.2  Score=42.75  Aligned_cols=124  Identities=17%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             EEEEEecCC---CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          213 VMGILNLTP---DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       213 imGIlN~tp---DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      |.|.+-+-|   +-+|+|+.-.-.|.|++.|+.+.+.|+|-|=|-=+-..|....+++ +-..-|..++.++++.   .+
T Consensus         5 iIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~-etvaaM~~i~~~v~~~---~~   80 (254)
T PF03437_consen    5 IIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGP-ETVAAMARIAREVRRE---VS   80 (254)
T ss_pred             EEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCH-HHHHHHHHHHHHHHHh---CC
Confidence            557777766   5677875444467788888999999999998876667787666654 5677788888888887   37


Q ss_pred             CeEEEeCCC---HHHHHHHHHcCCCEEe-cCCCCCC-------C---chHHHHHHhcCCCEEEEc
Q 038230          290 KLVSVDTFY---SKVASEAVGKGAHIVN-DVSAGQL-------D---PDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       290 ~pISIDT~~---~~v~~aaL~~G~~iIN-dVsg~~~-------d---~~m~~l~~~~~~~vVlmh  340 (480)
                      +|+.|+-..   .+.+.-|...|+++|- .+..+..       +   .+++..=+..++.+-++.
T Consensus        81 ~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila  145 (254)
T PF03437_consen   81 VPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILA  145 (254)
T ss_pred             CCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEe
Confidence            898887665   3456666777999886 2222110       1   346777777788844443

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=95.33  E-value=0.84  Score=54.83  Aligned_cols=208  Identities=17%  Similarity=0.120  Sum_probs=124.3

Q ss_pred             EEecC-CCCC-CCCCccCCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          216 ILNLT-PDSF-SDGGKFQSVEAAVSQVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       216 IlN~t-pDSF-sdgg~~~~~e~a~~~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      |...| .|-. |-.+..++.++.+..|..+-+.  |.+.|++|+..|.--+-....+++|+|+..+-+.+.      +.+
T Consensus       535 i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~------~~~  608 (1146)
T PRK12999        535 LTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAP------NVL  608 (1146)
T ss_pred             EEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCC------CCe
Confidence            45555 4522 2234557889999999999999  999999998777654445556788999865554442      333


Q ss_pred             EEEeCC----------C----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCC--CEEEEcCCCCCCcccccc
Q 038230          292 VSVDTF----------Y----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKV--PYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       292 ISIDT~----------~----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~--~vVlmh~~g~p~~~~~~~  352 (480)
                      +..=.+          -    .+-+++|.+.|++++-=..+.++-   ....+.+++.|.  -+.++.+ |+.-++.+ +
T Consensus       609 ~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~yt-g~~~d~~~-~  686 (1146)
T PRK12999        609 FQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYT-GDILDPAR-A  686 (1146)
T ss_pred             EEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEE-ecCCCCCC-C
Confidence            332111          1    233667788899988755555422   345777778873  2334443 21111111 0


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCC
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRP  430 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~  430 (480)
                      .  | +     .+++.+.++.+.++|..  .|.| |. .|..+ +.+..++++.++ ..+.|+=+ |.            
T Consensus       687 ~--~-~-----~~~~~~~a~~l~~~Ga~--~i~ikDt-~G~l~-P~~~~~lv~~lk~~~~ipi~~-H~------------  741 (1146)
T PRK12999        687 K--Y-D-----LDYYVDLAKELEKAGAH--ILAIKDM-AGLLK-PAAAYELVSALKEEVDLPIHL-HT------------  741 (1146)
T ss_pred             C--C-C-----HHHHHHHHHHHHHcCCC--EEEECCc-cCCCC-HHHHHHHHHHHHHHcCCeEEE-Ee------------
Confidence            0  1 1     26777888889999985  4443 54 33322 344566677663 45777633 11            


Q ss_pred             CcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          431 SADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       431 ~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                        .+-.+...+.+..|++.||+++.+-=
T Consensus       742 --Hnt~Gla~an~laA~~aGad~vD~av  767 (1146)
T PRK12999        742 --HDTSGNGLATYLAAAEAGVDIVDVAV  767 (1146)
T ss_pred             --CCCCchHHHHHHHHHHhCCCEEEecc
Confidence              12223444556678899999988754

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.27  E-value=1.9  Score=40.79  Aligned_cols=98  Identities=21%  Similarity=0.357  Sum_probs=73.3

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..++.|+...           +.+++++.++.+++.|++.|-+-..  .+.            -.+.++.+++..  .++
T Consensus         4 ~~~~~i~r~~-----------~~~~~~~~~~~l~~~G~~~vev~~~--~~~------------~~~~i~~l~~~~--~~~   56 (190)
T cd00452           4 QPLVAVLRGD-----------DAEDALALAEALIEGGIRAIEITLR--TPG------------ALEAIRALRKEF--PEA   56 (190)
T ss_pred             CcEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCC--Chh------------HHHHHHHHHHHC--CCC
Confidence            4566666555           4789999999999999999999742  121            112456666553  257


Q ss_pred             eEEEeCCC-HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDTFY-SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT~~-~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .|...|-- .+-++.|++.|++.|.  ++.. ++++...+++++.+++.
T Consensus        57 ~iGag~v~~~~~~~~a~~~Ga~~i~--~p~~-~~~~~~~~~~~~~~~i~  102 (190)
T cd00452          57 LIGAGTVLTPEQADAAIAAGAQFIV--SPGL-DPEVVKAANRAGIPLLP  102 (190)
T ss_pred             EEEEEeCCCHHHHHHHHHcCCCEEE--cCCC-CHHHHHHHHHcCCcEEC
Confidence            78887777 9999999999999995  4443 78999999999988774

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases

Probab=95.26  E-value=1.2  Score=45.01  Aligned_cols=153  Identities=11%  Similarity=0.117  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGAH  311 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~~  311 (480)
                      +...+.+++++++||++|=+.=.+.......+++++-.+.+.|.++.+.+.....+.++.+  .-......+.-.+.|++
T Consensus       144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~~~~~~~l~~~~~d  223 (306)
T cd00465         144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDAADLLEEMIQLGVD  223 (306)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCHHHHHHHHHHhCcc
Confidence            5567788899999999997762211111123566655555667777665421112455554  43335567777778999


Q ss_pred             EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC
Q 038230          312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG  391 (480)
Q Consensus       312 iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG  391 (480)
                      +++=-.. .  .++.++.++++-..++|-.  .+......   .    -+++.+..++.++.+   | +  +.|+.||-|
T Consensus       224 ~~~~d~~-~--~d~~~~~~~~~~~~~i~Gg--v~~~~~~~---~----~e~i~~~v~~~l~~~---~-~--~~il~~~cg  285 (306)
T cd00465         224 VISFDMT-V--NEPKEAIEKVGEKKTLVGG--VDPGYLPA---T----DEECIAKVEELVERL---G-P--HYIINPDCG  285 (306)
T ss_pred             eEecccc-c--CCHHHHHHHhCCCEEEECC--CCccccCC---C----HHHHHHHHHHHHHHh---C-C--CeEEeCCCC
Confidence            9872211 1  2567777888877777653  22211111   0    134444444444443   2 2  689999988


Q ss_pred             Cc-cChh--HHHHHHH
Q 038230          392 FS-KKAE--HNLDILL  404 (480)
Q Consensus       392 f~-k~~~--~~~~~lr  404 (480)
                      .. .+..  +|++.+-
T Consensus       286 i~~~~~~~~enl~a~v  301 (306)
T cd00465         286 LGPDSDYKPEHLRAVV  301 (306)
T ss_pred             CCCCCCCcHHHHHHHH
Confidence            74 3445  7776654

Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=94.93  E-value=2  Score=46.97  Aligned_cols=150  Identities=16%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230          224 FSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS  303 (480)
Q Consensus       224 Fsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~  303 (480)
                      .--.|..++.++-++.|+.+.+.|.++|.+|..+..        +.|.+.+..+.+.+..     ....++=..+.+-++
T Consensus        13 ~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s--------~~d~e~v~~i~~~~~~-----~~i~al~r~~~~did   79 (494)
T TIGR00973        13 EQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSS--------PGDFEAVQRIARTVKN-----PRVCGLARCVEKDID   79 (494)
T ss_pred             CcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHHHHhCCC-----CEEEEEcCCCHHhHH
Confidence            333456689999999999999999999999964322        2445554333322221     123344444778888


Q ss_pred             HHHHc----CCCEEe---cCCCCC------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHH
Q 038230          304 EAVGK----GAHIVN---DVSAGQ------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQ  362 (480)
Q Consensus       304 aaL~~----G~~iIN---dVsg~~------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~e  362 (480)
                      .|+++    +++.|+   .+|-..      ..        .++++.+++++..+......+..      .+         
T Consensus        80 ~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r------~d---------  144 (494)
T TIGR00973        80 AAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGR------TE---------  144 (494)
T ss_pred             HHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC------CC---------
Confidence            88876    444443   332110      00        24667788888776665443221      11         


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230          363 VASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       363 v~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l  406 (480)
                       .+++.+.++.+.++|..  .|.| |- +|... +.+..++++.+
T Consensus       145 -~~~l~~~~~~~~~~Ga~--~i~l~DT-vG~~~-P~~~~~~i~~l  184 (494)
T TIGR00973       145 -IPFLARIVEAAINAGAT--TINIPDT-VGYAL-PAEYGNLIKGL  184 (494)
T ss_pred             -HHHHHHHHHHHHHcCCC--EEEeCCC-CCCCC-HHHHHHHHHHH
Confidence             16777888889999985  4444 33 33322 34445555555

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=94.89  E-value=1.6  Score=48.86  Aligned_cols=193  Identities=15%  Similarity=0.115  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC----eEEEeCCCHHHHHHH-
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK----LVSVDTFYSKVASEA-  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~----pISIDT~~~~v~~aa-  305 (480)
                      +..++.+..|..+-+.|...|++++..|.-.+-..-.|..|+||..+-+.+.+...+.=+    .+..-++.-+|++.- 
T Consensus        23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v  102 (596)
T PRK14042         23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV  102 (596)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence            678899999999999999999999988876555555567788876555444321000000    245667776666654 


Q ss_pred             ---HHcCCCEEecCCCCCCCc---hHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230          306 ---VGKGAHIVNDVSAGQLDP---DMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS  377 (480)
Q Consensus       306 ---L~~G~~iINdVsg~~~d~---~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~  377 (480)
                         .+.|.+++-=..+.++-+   .-++.+++.|.-+..  +.+ +.|.-  .             .+++.+.++.+.++
T Consensus       103 ~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt-~sp~~--t-------------~e~~~~~ak~l~~~  166 (596)
T PRK14042        103 KLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT-TSPVH--T-------------LDNFLELGKKLAEM  166 (596)
T ss_pred             HHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec-CCCCC--C-------------HHHHHHHHHHHHHc
Confidence               556999887666666323   357778888864442  233 23421  0             25667788888899


Q ss_pred             CCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230          378 GIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR  455 (480)
Q Consensus       378 Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR  455 (480)
                      |+.  .|.| |. .|..+ +.+-.++++.++ ..+.|+=+ |+              .+..+...+.+..|++.||+++.
T Consensus       167 Gad--~I~IkDt-aG~l~-P~~v~~lv~alk~~~~ipi~~-H~--------------Hnt~Gla~an~laAieaGad~iD  227 (596)
T PRK14042        167 GCD--SIAIKDM-AGLLT-PTVTVELYAGLKQATGLPVHL-HS--------------HSTSGLASICHYEAVLAGCNHID  227 (596)
T ss_pred             CCC--EEEeCCc-ccCCC-HHHHHHHHHHHHhhcCCEEEE-Ee--------------CCCCCcHHHHHHHHHHhCCCEEE
Confidence            986  4544 54 33322 344566677663 45666532 11              12223344445668889999887


Q ss_pred             cCC
Q 038230          456 VHN  458 (480)
Q Consensus       456 vHd  458 (480)
                      +-=
T Consensus       228 ~ai  230 (596)
T PRK14042        228 TAI  230 (596)
T ss_pred             ecc
Confidence            643

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=94.82  E-value=0.37  Score=46.67  Aligned_cols=98  Identities=18%  Similarity=0.413  Sum_probs=75.5

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..++.|+...           +.+++++.++.+++.|-+.|.|-..+  |++            ..+|+.+++..  .++
T Consensus         8 ~~liaVlr~~-----------~~e~a~~~~~al~~~Gi~~iEit~~t--~~a------------~~~i~~l~~~~--~~~   60 (204)
T TIGR01182         8 AKIVPVIRID-----------DVDDALPLAKALIEGGLRVLEVTLRT--PVA------------LDAIRLLRKEV--PDA   60 (204)
T ss_pred             CCEEEEEecC-----------CHHHHHHHHHHHHHcCCCEEEEeCCC--ccH------------HHHHHHHHHHC--CCC
Confidence            4577777654           57999999999999999999998633  432            12345555543  357


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .|..=| .+++.++.|+++|++.|  ||-.. ++++++.+++++.+++-
T Consensus        61 ~vGAGTVl~~~~a~~a~~aGA~Fi--vsP~~-~~~v~~~~~~~~i~~iP  106 (204)
T TIGR01182        61 LIGAGTVLNPEQLRQAVDAGAQFI--VSPGL-TPELAKHAQDHGIPIIP  106 (204)
T ss_pred             EEEEEeCCCHHHHHHHHHcCCCEE--ECCCC-CHHHHHHHHHcCCcEEC
Confidence            777765 78999999999999999  55543 89999999999999884

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=94.74  E-value=0.19  Score=48.67  Aligned_cols=89  Identities=24%  Similarity=0.396  Sum_probs=68.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK  308 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~  308 (480)
                      ..++|+++..++.+++.|.+.|.|=..|..+       .       .+|+++++..  .++.|.-=| .+++.+++|.++
T Consensus        21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a-------~-------e~I~~l~~~~--p~~lIGAGTVL~~~q~~~a~~a   84 (211)
T COG0800          21 GDDVEEALPLAKALIEGGIPAIEITLRTPAA-------L-------EAIRALAKEF--PEALIGAGTVLNPEQARQAIAA   84 (211)
T ss_pred             eCCHHHHHHHHHHHHHcCCCeEEEecCCCCH-------H-------HHHHHHHHhC--cccEEccccccCHHHHHHHHHc
Confidence            3678999999999999999999997755332       1       2345555543  244454444 689999999999


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      |+++|  ||-.. ++++++.+.+|+.+++
T Consensus        85 Ga~fi--VsP~~-~~ev~~~a~~~~ip~~  110 (211)
T COG0800          85 GAQFI--VSPGL-NPEVAKAANRYGIPYI  110 (211)
T ss_pred             CCCEE--ECCCC-CHHHHHHHHhCCCccc
Confidence            99999  55543 7999999999999987

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=94.61  E-value=2.5  Score=42.08  Aligned_cols=171  Identities=18%  Similarity=0.218  Sum_probs=100.8

Q ss_pred             ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038230          200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE  279 (480)
Q Consensus       200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~  279 (480)
                      +++..++. .+|+|...+.  .         .+.+++++.+++..+.|||+|.+=...-    ...+   +.+.+...+.
T Consensus         6 ~~~~~~~~-~~~~i~v~l~--~---------~~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~---~~~~~~~~~~   66 (253)
T PRK02412          6 VKNLVIGE-GAPKIIVPIM--G---------KTLEEVLAEALAISKYDADIIEWRADFL----EKIS---DVESVLAAAP   66 (253)
T ss_pred             EeceEeCC-CCcEEEEEeC--C---------CCHHHHHHHHHHHhhcCCCEEEEEechh----hccC---CHHHHHHHHH
Confidence            34444543 4677766553  2         3678999999999999999999865321    1111   2344555566


Q ss_pred             HHHcCCcCCCCeEEE--e------------CCCHHHHHHHHHcC-CCEEecCCCCCCC---chHHHHHHhcCCCEEEEc-
Q 038230          280 AVLTMPEMEGKLVSV--D------------TFYSKVASEAVGKG-AHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMH-  340 (480)
Q Consensus       280 ~l~~~~~~~~~pISI--D------------T~~~~v~~aaL~~G-~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh-  340 (480)
                      .+++..  .++|+-+  =            ..+.+.++.+++.| +++| ||.-...+   .++...+++.++.+|+.+ 
T Consensus        67 ~l~~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~v-DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H  143 (253)
T PRK02412         67 AIREKF--AGKPLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYI-DVELFSGKDVVKEMVAFAHEHGVKVVLSYH  143 (253)
T ss_pred             HHHHhc--CCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEE-EEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence            666542  2345433  2            22345778888888 7877 46532212   234555667899999864 


Q ss_pred             C-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---c--cCCCcEE
Q 038230          341 M-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---A--ASHAPIL  414 (480)
Q Consensus       341 ~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~--~~g~Pil  414 (480)
                      + .++|..                 +.+.+.++.+.+.|-+-=+|..     .+++..+++.+++-.   +  ..+.|++
T Consensus       144 ~f~~tP~~-----------------~~l~~~~~~~~~~gaDivKia~-----~a~~~~D~~~ll~~~~~~~~~~~~~P~i  201 (253)
T PRK02412        144 DFEKTPPK-----------------EEIVERLRKMESLGADIVKIAV-----MPQSEQDVLTLLNATREMKELYADQPLI  201 (253)
T ss_pred             CCCCCcCH-----------------HHHHHHHHHHHHhCCCEEEEEe-----cCCCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            3 344421                 2345677788888854224444     346777777776543   2  2577864

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=94.61  E-value=4.2  Score=44.91  Aligned_cols=152  Identities=14%  Similarity=0.077  Sum_probs=88.2

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCH-
Q 038230          223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYS-  299 (480)
Q Consensus       223 SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~-  299 (480)
                      -.---|..++.++-++.|+.+.+.|.|+|.+|..+..|        .|.+.+..+.+.   ..  .+..|+.  .+.++ 
T Consensus        12 G~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~--------~d~~~v~~i~~~---~~--~~~~i~~~~r~~r~~   78 (526)
T TIGR00977        12 GAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP--------KDVQFFWQLKEM---NF--KNAKIVAFCSTRRPH   78 (526)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh--------HHHHHHHHHHHh---CC--CCcEEEEEeeecCCC
Confidence            33334567899999999999999999999999644333        334443333321   11  1223332  34444 


Q ss_pred             ------HHHHHHHHcCCCEEec---CCC------CCCC--------chHHHHHHhcCCCEEE--EcC-CCCCCccccccc
Q 038230          300 ------KVASEAVGKGAHIVND---VSA------GQLD--------PDMYKVVAGLKVPYVA--MHM-RGDPSTMQNEEN  353 (480)
Q Consensus       300 ------~v~~aaL~~G~~iINd---Vsg------~~~d--------~~m~~l~~~~~~~vVl--mh~-~g~p~~~~~~~~  353 (480)
                            ..+++++++|++.|.=   .|.      ....        .++++.+++++..|..  +|. ++.-      .+
T Consensus        79 ~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r------~~  152 (526)
T TIGR00977        79 KKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYK------AN  152 (526)
T ss_pred             CCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeeccc------CC
Confidence                  4578888888886553   321      1111        1346778888877653  443 2211      11


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l  406 (480)
                                .+++.+.++.+.++|.++ =.|.|. +|. .++.+..++++.+
T Consensus       153 ----------~~~l~~~~~~a~~aGad~-i~i~DT-vG~-~~P~~v~~li~~l  192 (526)
T TIGR00977       153 ----------PEYALATLATAQQAGADW-LVLCDT-NGG-TLPHEISEITTKV  192 (526)
T ss_pred             ----------HHHHHHHHHHHHhCCCCe-EEEecC-CCC-cCHHHHHHHHHHH
Confidence                      167788888899999873 234475 232 2334445566665

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>PLN02389 biotin synthase

Probab=94.61  E-value=2.7  Score=44.44  Aligned_cols=97  Identities=15%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             CcEEEEEEecCC-----C----CCCC---C----CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230          210 KTSVMGILNLTP-----D----SFSD---G----GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER  273 (480)
Q Consensus       210 ~~~imGIlN~tp-----D----SFsd---g----g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r  273 (480)
                      ++.+-+|+|+.-     |    +||.   .    ...+++|++++.|++..+.|+.-+-++. |.+.   ...++.++++
T Consensus        79 ~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivt-s~rg---~~~e~~~~e~  154 (379)
T PLN02389         79 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGA-AWRD---TVGRKTNFNQ  154 (379)
T ss_pred             EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEe-cccC---CCCChhHHHH
Confidence            577888888831     2    2332   1    2247999999999999999999998863 2221   1223346888


Q ss_pred             HHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHHHcCCCEEe
Q 038230          274 LIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL~~G~~iIN  314 (480)
                      +..+++.+++.    ++.+  |.-....+++++--++|++.+|
T Consensus       155 i~eiir~ik~~----~l~i~~s~G~l~~E~l~~LkeAGld~~~  193 (379)
T PLN02389        155 ILEYVKEIRGM----GMEVCCTLGMLEKEQAAQLKEAGLTAYN  193 (379)
T ss_pred             HHHHHHHHhcC----CcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence            88889888853    4433  3334556666666666776655

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=94.56  E-value=1.6  Score=45.95  Aligned_cols=159  Identities=20%  Similarity=0.187  Sum_probs=96.7

Q ss_pred             CCcEEEEEEecC----CC----CCCC----CCccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230          209 LKTSVMGILNLT----PD----SFSD----GGKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       209 ~~~~imGIlN~t----pD----SFsd----gg~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~  275 (480)
                      .+..+..++|+|    -|    +||.    ....++.+++++.|+.+.+.|+.-|-+ ||++  |..      .+++.+.
T Consensus        70 ~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~------~~~e~l~  141 (371)
T PRK09240         70 NTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEH--EAK------VGVDYIR  141 (371)
T ss_pred             CEEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCC------CCHHHHH
Confidence            345566778876    22    3332    124579999999999999999998865 4442  221      2366777


Q ss_pred             HHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230          276 PVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ  355 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~  355 (480)
                      .+++.|++..  ..+-+++-....+.+++--++|++-+| ++-.+.+++.++-+          |..|...        .
T Consensus       142 ~~i~~Ik~~~--p~i~i~~g~lt~e~l~~Lk~aGv~r~~-i~lET~~~~~~~~i----------~~~g~~h--------~  200 (371)
T PRK09240        142 RALPIAREYF--SSVSIEVQPLSEEEYAELVELGLDGVT-VYQETYNPATYAKH----------HLRGPKR--------D  200 (371)
T ss_pred             HHHHHHHHhC--CCceeccCCCCHHHHHHHHHcCCCEEE-EEEecCCHHHHHHh----------CcCCCCC--------C
Confidence            7788877542  234444444556666555556777665 44444445554433          2211111        1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l  406 (480)
                      |+        .-.+.++.|.++|++  +|=.+-.+|.+.+.++-++++.++
T Consensus       201 ~~--------~rl~~i~~a~~aG~~--~v~~g~i~Glge~~~d~~~~a~~l  241 (371)
T PRK09240        201 FE--------YRLETPERAGRAGIR--KIGLGALLGLSDWRTDALMTALHL  241 (371)
T ss_pred             HH--------HHHHHHHHHHHcCCC--eeceEEEecCCccHHHHHHHHHHH
Confidence            22        223667888999996  677888788888777766665544

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.43  E-value=0.52  Score=45.54  Aligned_cols=98  Identities=23%  Similarity=0.362  Sum_probs=74.8

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      -.++.|+...           +.+++++.++.+++.|-..|.|-..  .|++            ..+|+.+++..  .++
T Consensus         4 ~~vv~Vir~~-----------~~~~a~~ia~al~~gGi~~iEit~~--tp~a------------~~~I~~l~~~~--~~~   56 (201)
T PRK06015          4 QPVIPVLLID-----------DVEHAVPLARALAAGGLPAIEITLR--TPAA------------LDAIRAVAAEV--EEA   56 (201)
T ss_pred             CCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCC--CccH------------HHHHHHHHHHC--CCC
Confidence            3466666544           5799999999999999999999863  3432            12445555543  367


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .|..=| .+++.++.|+++|+++|-|-  . .++++++.+++++.+++-
T Consensus        57 ~vGAGTVl~~e~a~~ai~aGA~FivSP--~-~~~~vi~~a~~~~i~~iP  102 (201)
T PRK06015         57 IVGAGTILNAKQFEDAAKAGSRFIVSP--G-TTQELLAAANDSDVPLLP  102 (201)
T ss_pred             EEeeEeCcCHHHHHHHHHcCCCEEECC--C-CCHHHHHHHHHcCCCEeC
Confidence            777766 78999999999999999544  3 379999999999999983

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=94.38  E-value=1.4  Score=46.20  Aligned_cols=159  Identities=18%  Similarity=0.164  Sum_probs=100.4

Q ss_pred             CCcEEEEEEecC----CC----CCCCC----CccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230          209 LKTSVMGILNLT----PD----SFSDG----GKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       209 ~~~~imGIlN~t----pD----SFsdg----g~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~  275 (480)
                      .+..+.+++|.|    -|    +||..    ...++.|++++.|+.+.+.|+.-|=+ ||+.  |..      .+++++.
T Consensus        69 ~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~------~~~e~l~  140 (366)
T TIGR02351        69 NTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGES--EKA------AGVEYIA  140 (366)
T ss_pred             CEEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCC------CCHHHHH
Confidence            345566777777    23    33321    13468999999999999999986654 4432  221      2366777


Q ss_pred             HHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230          276 PVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ  355 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~  355 (480)
                      .+++.+++..  ..+.+.+.....+.+++-.++|++-+| ++-.+.+++.++-+          |..|...+        
T Consensus       141 eii~~Ik~~~--p~i~Iei~~lt~e~~~~Lk~aGv~r~~-i~lET~~~~~y~~i----------~~~g~~h~--------  199 (366)
T TIGR02351       141 EAIKLAREYF--SSLAIEVQPLNEEEYKKLVEAGLDGVT-VYQETYNEKKYKKH----------HLAGKKKD--------  199 (366)
T ss_pred             HHHHHHHHhC--CccccccccCCHHHHHHHHHcCCCEEE-EEeecCCHHHHHhc----------CcCCCCCC--------
Confidence            7788887653  235566667888888777778988776 55555556655443          22121111        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l  406 (480)
                      |        +.-.+.++.|.++|++  +|=++-.+|.+.+..+.+++..++
T Consensus       200 ~--------~~rl~~i~~a~~aG~~--~v~~g~i~Gl~e~~~d~~~~a~~l  240 (366)
T TIGR02351       200 F--------RYRLNTPERAAKAGMR--KIGIGALLGLDDWRTDAFFTAYHL  240 (366)
T ss_pred             H--------HHHHHHHHHHHHcCCC--eeceeEEEeCchhHHHHHHHHHHH
Confidence            1        2223678889999996  566677777777777767665443

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.21  E-value=2.3  Score=41.08  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----Ee-------
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----VD-------  295 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----ID-------  295 (480)
                      |+...+.+.+.+.|+.+.+.||..+.++.            .+++       +.+++.   +++|+.    -|       
T Consensus        16 ~~~~~~~~~~~~~a~a~~~~G~~~~~~~~------------~~~i-------~~i~~~---~~~Pil~~~~~d~~~~~~~   73 (221)
T PRK01130         16 GEPLHSPEIMAAMALAAVQGGAVGIRANG------------VEDI-------KAIRAV---VDVPIIGIIKRDYPDSEVY   73 (221)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCeEEEcCC------------HHHH-------HHHHHh---CCCCEEEEEecCCCCCCce
Confidence            44466788999999999999999999852            1233       333433   245542    12       


Q ss_pred             -CCCHHHHHHHHHcCCCEEecCCCC------CCCchHHHHHHh-cCCCEEEEcCCCCCCccccccccchhhHHHHHHHHH
Q 038230          296 -TFYSKVASEAVGKGAHIVNDVSAG------QLDPDMYKVVAG-LKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL  367 (480)
Q Consensus       296 -T~~~~v~~aaL~~G~~iINdVsg~------~~d~~m~~l~~~-~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l  367 (480)
                       +...+-+++|.++|+++|.-....      ....++++.+++ .+.+++.--.     +                    
T Consensus        74 ~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-----t--------------------  128 (221)
T PRK01130         74 ITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS-----T--------------------  128 (221)
T ss_pred             ECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC-----C--------------------
Confidence             123566899999999977633221      112578889999 6777664111     0                    


Q ss_pred             HHHHHHHHHCCCCCCCEEEecC-CCCc----cChhHHHHHHHhc-ccCCCcEEEe
Q 038230          368 YSKVRDAELSGIPAWRIIIDPG-LGFS----KKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       368 ~~~i~~a~~~Gi~~~~IilDPg-iGf~----k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      .+.+..+.+.|..   + +-.+ .|+.    ......++.++++ +..+.|++.+
T Consensus       129 ~ee~~~a~~~G~d---~-i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~  179 (221)
T PRK01130        129 LEEGLAAQKLGFD---F-IGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAE  179 (221)
T ss_pred             HHHHHHHHHcCCC---E-EEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEE
Confidence            0223467788985   3 3332 1221    1223346677777 3458998864

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.18  E-value=0.66  Score=45.53  Aligned_cols=103  Identities=20%  Similarity=0.324  Sum_probs=76.2

Q ss_pred             CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      +..|+.|+...           +.+++++.++.+++.|-..|.|-..+  |++     .+.++++.   +...+..  .+
T Consensus        14 ~~~vi~Vvr~~-----------~~~~a~~~~~al~~gGi~~iEiT~~t--p~a-----~~~i~~l~---~~~~~~~--p~   70 (222)
T PRK07114         14 ATGMVPVFYHA-----------DVEVAKKVIKACYDGGARVFEFTNRG--DFA-----HEVFAELV---KYAAKEL--PG   70 (222)
T ss_pred             hCCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--CcH-----HHHHHHHH---HHHHhhC--CC
Confidence            35678877654           57999999999999999999997633  432     23344332   2333332  35


Q ss_pred             CeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          290 KLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       290 ~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +.|..=| .+++.+++|+++|+++|-  |-. .++++++.+++++.+++-
T Consensus        71 ~~vGaGTVl~~e~a~~a~~aGA~FiV--sP~-~~~~v~~~~~~~~i~~iP  117 (222)
T PRK07114         71 MILGVGSIVDAATAALYIQLGANFIV--TPL-FNPDIAKVCNRRKVPYSP  117 (222)
T ss_pred             eEEeeEeCcCHHHHHHHHHcCCCEEE--CCC-CCHHHHHHHHHcCCCEeC
Confidence            6777766 789999999999999995  443 379999999999999983

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.18  E-value=0.24  Score=50.15  Aligned_cols=79  Identities=20%  Similarity=0.202  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHHHHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVASEAV  306 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~aaL  306 (480)
                      +.++..+.|+.+.+.|+|.|+|+..|.......-.-....+.+..+++.+++.   .++||++--.    + .+.++.+.
T Consensus       100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl~~~~~~~~~~a~~~~  176 (296)
T cd04740         100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKLTPNVTDIVEIARAAE  176 (296)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHHH
Confidence            57888899999999999999999765332110000012235666788888876   3778776321    1 23344555


Q ss_pred             HcCCCEE
Q 038230          307 GKGAHIV  313 (480)
Q Consensus       307 ~~G~~iI  313 (480)
                      ++|++.|
T Consensus       177 ~~G~d~i  183 (296)
T cd04740         177 EAGADGL  183 (296)
T ss_pred             HcCCCEE
Confidence            5666544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PLN02321 2-isopropylmalate synthase

Probab=94.18  E-value=3.3  Score=46.67  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=108.9

Q ss_pred             EEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC---C
Q 038230          214 MGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME---G  289 (480)
Q Consensus       214 mGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~---~  289 (480)
                      +=|+-.|+ |-.=-.|..++.++-++.|+.+.+.|.++|++|..+..|.        |++.+..+.+.+.+.....   .
T Consensus        87 V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--------D~e~vr~i~~~~~~~v~~~~~v~  158 (632)
T PLN02321         87 VRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--------DLEAVKTIAKEVGNEVDEDGYVP  158 (632)
T ss_pred             eEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--------HHHHHHHHHHhcccCCCccccce
Confidence            34566664 4444456779999999999999999999999996433332        3444433333332210000   1


Q ss_pred             CeEEEeCCCHHHHHHHHHc--C-----CCEEecCCCC------CCC--------chHHHHHHhcCCC-EEEEcCCCCCCc
Q 038230          290 KLVSVDTFYSKVASEAVGK--G-----AHIVNDVSAG------QLD--------PDMYKVVAGLKVP-YVAMHMRGDPST  347 (480)
Q Consensus       290 ~pISIDT~~~~v~~aaL~~--G-----~~iINdVsg~------~~d--------~~m~~l~~~~~~~-vVlmh~~g~p~~  347 (480)
                      ...+.=-.+.+-++.|+++  |     +.+...+|-.      ...        .++++.++++|.. +......+.   
T Consensus       159 ~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~---  235 (632)
T PLN02321        159 VICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG---  235 (632)
T ss_pred             eeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC---
Confidence            1223444577888888887  3     2344444321      001        2467788888875 333222211   


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCc-EEEeecccccc
Q 038230          348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAP-ILIGPSRKRFL  423 (480)
Q Consensus       348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~P-il~G~SrKsfi  423 (480)
                         +.+          .+++.+.++.+.++|..  .|.| |- +|.. ++.+..++++.++  ..+.+ +.+|+-     
T Consensus       236 ---rtd----------~d~l~~~~~~a~~aGa~--~I~L~DT-vG~~-~P~~v~~li~~l~~~~~~~~~v~i~vH-----  293 (632)
T PLN02321        236 ---RSD----------PEFLYRILGEVIKAGAT--TLNIPDT-VGYT-LPSEFGQLIADIKANTPGIENVIISTH-----  293 (632)
T ss_pred             ---CCC----------HHHHHHHHHHHHHcCCC--EEEeccc-ccCC-CHHHHHHHHHHHHHhcCCCCCceEEEE-----
Confidence               111          16778888899999975  4433 43 2322 2344455666652  23332 333431     


Q ss_pred             ccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230          424 GEICNRPSADERDPATIASITAGVLGGANIVRV  456 (480)
Q Consensus       424 ~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv  456 (480)
                        .  -   .|+ +...|-+..|++.||+.+-+
T Consensus       294 --~--H---ND~-GlAvANslaAv~AGA~~Vd~  318 (632)
T PLN02321        294 --C--Q---NDL-GLSTANTLAGAHAGARQVEV  318 (632)
T ss_pred             --e--C---CCC-CHHHHHHHHHHHhCCCEEEE
Confidence              1  0   123 23333345577888877654

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=94.17  E-value=1.1  Score=47.99  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-----CCCHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-----TFYSKVASEA  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-----T~~~~v~~aa  305 (480)
                      .+.+++++.++++++.|+++|.+|.    |.        ........++.+++..  ....|..|     . -..-++.|
T Consensus        13 ~~~~~~~~~~~~~~~~Gv~~ie~g~----p~--------~~~~~~~~i~~l~~~~--~~~~ii~D~kl~d~-g~~~v~~a   77 (430)
T PRK07028         13 LELDRAVEIAKEAVAGGADWIEAGT----PL--------IKSEGMNAIRTLRKNF--PDHTIVADMKTMDT-GAIEVEMA   77 (430)
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEeCC----HH--------HHHhhHHHHHHHHHHC--CCCEEEEEeeeccc-hHHHHHHH
Confidence            4689999999999999999999973    21        0112234456665542  12334444     2 23378889


Q ss_pred             HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      .++|++.|--. +...+   .+.++.++++|..+++ +.+   |.+.                   .+++..+.+.|++ 
T Consensus        78 ~~aGAdgV~v~-g~~~~~~~~~~i~~a~~~G~~~~~g~~s---~~t~-------------------~e~~~~a~~~GaD-  133 (430)
T PRK07028         78 AKAGADIVCIL-GLADDSTIEDAVRAARKYGVRLMADLIN---VPDP-------------------VKRAVELEELGVD-  133 (430)
T ss_pred             HHcCCCEEEEe-cCCChHHHHHHHHHHHHcCCEEEEEecC---CCCH-------------------HHHHHHHHhcCCC-
Confidence            99999987633 22211   3567788889988876 222   1110                   1234566678886 


Q ss_pred             CCEEEecCCCCccChhHHHHHHHhcc-cCCCcEEE
Q 038230          382 WRIIIDPGLGFSKKAEHNLDILLGLA-ASHAPILI  415 (480)
Q Consensus       382 ~~IilDPgiGf~k~~~~~~~~lr~l~-~~g~Pil~  415 (480)
                       -|.+-||+.-.......++.+++++ ..++|+++
T Consensus       134 -~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a  167 (430)
T PRK07028        134 -YINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAV  167 (430)
T ss_pred             -EEEEEeccchhhcCCChHHHHHHHHhhCCCcEEE
Confidence             6778886521111122355677663 45788865

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=94.06  E-value=0.24  Score=50.07  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=55.2

Q ss_pred             EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      -|||++-..-               ...|+.+.+.||||||   +|.||..           +...+..++..   .+.|
T Consensus        67 PVIGi~K~~~---------------~~Ea~~L~eaGvDiID---aT~r~rP-----------~~~~~~~iK~~---~~~l  114 (283)
T cd04727          67 PVMAKVRIGH---------------FVEAQILEALGVDMID---ESEVLTP-----------ADEEHHIDKHK---FKVP  114 (283)
T ss_pred             CeEEeeehhH---------------HHHHHHHHHcCCCEEe---ccCCCCc-----------HHHHHHHHHHH---cCCc
Confidence            3888876431               7789999999999998   5555431           12334555654   2789


Q ss_pred             EEEeCCCHHHHHHHHHcCCCEEecC
Q 038230          292 VSVDTFYSKVASEAVGKGAHIVNDV  316 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~G~~iINdV  316 (480)
                      +.=|..+-+.+..|.+.|+|||-.-
T Consensus       115 ~MAD~stleEal~a~~~Gad~I~TT  139 (283)
T cd04727         115 FVCGARNLGEALRRISEGAAMIRTK  139 (283)
T ss_pred             EEccCCCHHHHHHHHHCCCCEEEec
Confidence            9999999999999999999999643

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=93.95  E-value=11  Score=41.80  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---------eCCC
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---------DTFY  298 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---------DT~~  298 (480)
                      |..++.++-++.|+.+.+.|.+.|++|..+..|        .|.+.+    +.|.+.. ..+..++.         +..+
T Consensus        21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~--------~d~~~~----~~i~~~~-l~~~~i~~~~~~~~~~i~~~~   87 (524)
T PRK12344         21 GISFSVEDKLRIARKLDELGVDYIEGGWPGSNP--------KDTEFF----KRAKELK-LKHAKLAAFGSTRRAGVSAEE   87 (524)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh--------hHHHHH----HHHHHhC-CCCcEEEEEeeccccCCCccc
Confidence            456899999999999999999999999633222        233322    2222110 01233332         2233


Q ss_pred             HHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcC---CCCCCccccccccchhh
Q 038230          299 SKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHM---RGDPSTMQNEENLQYDD  358 (480)
Q Consensus       299 ~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~---~g~p~~~~~~~~~~~~~  358 (480)
                      ...++++++.|++.|.=....         +.+        .++++.++++|..+.....   ++ +.     .+     
T Consensus        88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da-~r-----~d-----  156 (524)
T PRK12344         88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG-YK-----AN-----  156 (524)
T ss_pred             HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc-cc-----CC-----
Confidence            457788888998877644221         100        2467788888887765332   21 11     11     


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcE
Q 038230          359 VCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPI  413 (480)
Q Consensus       359 v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pi  413 (480)
                           .+++.+.++.+.++|.+  +|.| |- +|.. ++.+..++++.+ +..+.|+
T Consensus       157 -----~~~l~~~~~~~~~~Gad--~i~l~DT-vG~~-~P~~v~~li~~l~~~~~v~i  204 (524)
T PRK12344        157 -----PEYALATLKAAAEAGAD--WVVLCDT-NGGT-LPHEVAEIVAEVRAAPGVPL  204 (524)
T ss_pred             -----HHHHHHHHHHHHhCCCC--eEEEccC-CCCc-CHHHHHHHHHHHHHhcCCeE
Confidence                 16677888888899987  4443 54 2322 234445556655 2335554

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=93.94  E-value=1.6  Score=42.55  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=95.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH----HHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK----VASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~----v~~aa  305 (480)
                      +.+.++|++.|++..+. +|||.+|.    |-    =-.+=+    ..|+.|++.+  ++.+|--|+--.+    .++.|
T Consensus        12 ~~~l~~Ai~~a~~v~~~-~diiEvGT----pL----ik~eG~----~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma   76 (217)
T COG0269          12 LLDLEEAIEIAEEVADY-VDIIEVGT----PL----IKAEGM----RAVRALRELF--PDKIIVADLKTADAGAIEARMA   76 (217)
T ss_pred             ccCHHHHHHHHHHhhhc-ceEEEeCc----HH----HHHhhH----HHHHHHHHHC--CCCeEEeeeeecchhHHHHHHH
Confidence            36789999999998777 99999994    21    011112    4567777764  4777877754332    35677


Q ss_pred             HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      .++|||++- |+|...+   ...++.+++||..+.+ .+-|..                    .+.++...+++.|+.  
T Consensus        77 ~~aGAd~~t-V~g~A~~~TI~~~i~~A~~~~~~v~i-Dl~~~~--------------------~~~~~~~~l~~~gvd--  132 (217)
T COG0269          77 FEAGADWVT-VLGAADDATIKKAIKVAKEYGKEVQI-DLIGVW--------------------DPEQRAKWLKELGVD--  132 (217)
T ss_pred             HHcCCCEEE-EEecCCHHHHHHHHHHHHHcCCeEEE-EeecCC--------------------CHHHHHHHHHHhCCC--
Confidence            788999997 7665533   4578888899966554 322211                    123455555668887  


Q ss_pred             CEEEecCCC---CccCh-hHHHHHHHhcccCCCcEEE
Q 038230          383 RIIIDPGLG---FSKKA-EHNLDILLGLAASHAPILI  415 (480)
Q Consensus       383 ~IilDPgiG---f~k~~-~~~~~~lr~l~~~g~Pil~  415 (480)
                      .+++=-|.-   .|++. ..+++.++++..+|.++-+
T Consensus       133 ~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV  169 (217)
T COG0269         133 QVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV  169 (217)
T ss_pred             EEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEE
Confidence            777776654   46666 5778888887555666544

>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated

Probab=93.87  E-value=3.7  Score=42.24  Aligned_cols=148  Identities=14%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd  315 (480)
                      .++.++.|+++|||+|=+.- +.. +...+|+++-.+...|.++.+.+..+.....+-++......++.-.+.|++.++ 
T Consensus       182 ~~~~~~~~~~aGad~I~i~d-~~a-~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~~~l~~~~~~g~d~~~-  258 (339)
T PRK06252        182 CIEYAKAQLEAGADVICIAD-PSA-SPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLTSILEEMADCGFDGIS-  258 (339)
T ss_pred             HHHHHHHHHHcCCCEEEeCC-CCc-cccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCchHHHHHHHhcCCCeec-
Confidence            45678889999999998853 211 234678766665666666666554321123455566666677777778999876 


Q ss_pred             CCCCCCCchHHHHHHhcCCCEEEEcCCCCC-CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCc-
Q 038230          316 VSAGQLDPDMYKVVAGLKVPYVAMHMRGDP-STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFS-  393 (480)
Q Consensus       316 Vsg~~~d~~m~~l~~~~~~~vVlmh~~g~p-~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~-  393 (480)
                      +..   ...+.+..+.++-.+++|-.- .| ..+..       ...+++.    +.+.++.+.|-    -|+.||.|+. 
T Consensus       259 ~d~---~~dl~~~~~~~g~~~~i~Gni-dp~~~l~~-------gt~eeI~----~~v~~~l~~g~----~Il~~gcgi~~  319 (339)
T PRK06252        259 IDE---KVDVKTAKENVGDRAALIGNV-STSFTLLN-------GTPEKVK----AEAKKCLEDGV----DILAPGCGIAP  319 (339)
T ss_pred             cCC---CCCHHHHHHHhCCCeEEEecc-CcHHHhcC-------CCHHHHH----HHHHHHHHcCC----CEEcCCCCCCC
Confidence            321   235666666776667776432 23 11111       1122333    33333333442    3999999984 


Q ss_pred             cChhHHHHHHHh
Q 038230          394 KKAEHNLDILLG  405 (480)
Q Consensus       394 k~~~~~~~~lr~  405 (480)
                      .+..+|++.+-+
T Consensus       320 ~tp~enl~a~v~  331 (339)
T PRK06252        320 KTPLENIKAMVE  331 (339)
T ss_pred             CCCHHHHHHHHH
Confidence            566777766544

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=93.81  E-value=2.1  Score=43.12  Aligned_cols=160  Identities=13%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             HHHHHHcCCCEEEeCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-HHH-HH---HHHH-c
Q 038230          240 VRLMISEGADMIDIGAQS-----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-SKV-AS---EAVG-K  308 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~eS-----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-~~v-~~---aaL~-~  308 (480)
                      |+-..++|.|.|=+|-..     ..|...+|+-++-+.....|.+....-+-..|+|++  ||. ++. ++   ..++ .
T Consensus        28 A~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~--sy~~~e~a~~na~rl~~ea  105 (263)
T TIGR00222        28 AKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM--SYATPEQALKNAARVMQET  105 (263)
T ss_pred             HHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC--CCCCHHHHHHHHHHHHHHh
Confidence            445558999999888110     112233567554444443333322221112366776  663 333 22   2344 5


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |++.|| +-++..-.+.++.+.+.|+||+. |..=+|++....-.+.-..-..+..+.+.++...++++|..   .++=|
T Consensus       106 Ga~aVk-iEgg~~~~~~i~~l~~~gIpV~g-HiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~---~ivlE  180 (263)
T TIGR00222       106 GANAVK-LEGGEWLVETVQMLTERGVPVVG-HLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQ---LLVLE  180 (263)
T ss_pred             CCeEEE-EcCcHhHHHHHHHHHHCCCCEEE-ecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCC---EEEEc
Confidence            999999 65553234566777788999874 54334554322111100000112224455677778899995   66666


Q ss_pred             CCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          389 GLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       389 giGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                      ++-        -++.+.+ +.+.+|+.
T Consensus       181 ~vp--------~~~a~~It~~l~iP~i  199 (263)
T TIGR00222       181 CVP--------VELAAKITEALAIPVI  199 (263)
T ss_pred             CCc--------HHHHHHHHHhCCCCEE
Confidence            662        1344444 35678864

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=93.60  E-value=0.47  Score=45.34  Aligned_cols=86  Identities=23%  Similarity=0.381  Sum_probs=56.1

Q ss_pred             EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      -|.||+.-.   +-|.+.|.++  -++.++++++.|||||=+=+ ..||..         +.+..+++.+++.    ..+
T Consensus        34 PIIGi~K~~---y~~~~V~ITP--T~~ev~~l~~aGadIIAlDa-T~R~Rp---------~~l~~li~~i~~~----~~l   94 (192)
T PF04131_consen   34 PIIGIIKRD---YPDSDVYITP--TLKEVDALAEAGADIIALDA-TDRPRP---------ETLEELIREIKEK----YQL   94 (192)
T ss_dssp             -EEEE-B-S---BTTSS--BS---SHHHHHHHHHCT-SEEEEE--SSSS-S---------S-HHHHHHHHHHC----TSE
T ss_pred             CEEEEEecc---CCCCCeEECC--CHHHHHHHHHcCCCEEEEec-CCCCCC---------cCHHHHHHHHHHh----CcE
Confidence            478888743   2233567765  56789999999999999987 445532         2244456777876    489


Q ss_pred             EEEeCCCHHHHHHHHHcCCCEEecC
Q 038230          292 VSVDTFYSKVASEAVGKGAHIVNDV  316 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~G~~iINdV  316 (480)
                      +.=|-...+.+..|.++|+|+|-.-
T Consensus        95 ~MADist~ee~~~A~~~G~D~I~TT  119 (192)
T PF04131_consen   95 VMADISTLEEAINAAELGFDIIGTT  119 (192)
T ss_dssp             EEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred             EeeecCCHHHHHHHHHcCCCEEEcc
Confidence            9999999999999999999999644

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases

Probab=93.53  E-value=3.7  Score=41.83  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGAH  311 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~~  311 (480)
                      +..++.++.++++||++|=+.-....  ...+|++.-.+.+.|.++.+.+..+..+.++.+  +......++.-.+.|++
T Consensus       168 ~~~~~~~~~~~~~G~d~i~i~d~~~~--~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d  245 (330)
T cd03465         168 EFIIRYADALIEAGADGIYISDPWAS--SSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGAD  245 (330)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCccc--cCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCC
Confidence            34567788899999999988742211  234577655555555555444322112455554  66555678788888999


Q ss_pred             EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       312 iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      ++| +..   ...+.++.+.++-..++|-.- .|. .+.       ....+++.+..++.++.+...   +.+.|+-||-
T Consensus       246 ~~~-~d~---~~dl~~~~~~~g~~~~i~G~i-d~~~~l~-------~gt~eei~~~v~~~l~~~~~~---~~~~il~~gc  310 (330)
T cd03465         246 VFS-IDV---TVDLAEAKKKVGDKACLMGNL-DPIDVLL-------NGSPEEIKEEVKELLEKLLKG---GGGYILSSGC  310 (330)
T ss_pred             eEe-ecc---cCCHHHHHHHhCCceEEEeCc-ChHHhhc-------CCCHHHHHHHHHHHHHHHhCC---CCCEEEeCCC
Confidence            988 322   136667777788777776532 222 111       111245555555666655322   2478999998


Q ss_pred             CCc-cChhHHHHHHH
Q 038230          391 GFS-KKAEHNLDILL  404 (480)
Q Consensus       391 Gf~-k~~~~~~~~lr  404 (480)
                      |.. .+..+|++.+-
T Consensus       311 ~i~~~~p~enl~a~v  325 (330)
T cd03465         311 EIPPDTPIENIKAMI  325 (330)
T ss_pred             CCCCCCCHHHHHHHH
Confidence            874 55667776553

Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.

>PRK06256 biotin synthase; Validated

Probab=93.46  E-value=2.1  Score=44.13  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG  307 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~  307 (480)
                      ++.++|++++.++++.+.|+..+-+ ++. ..|.      ..+++++..+++.+++... ..+-+++...+++.+++--+
T Consensus        89 ~~~s~eeI~~~~~~~~~~g~~~~~l~~~g-~~p~------~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~Lke  160 (336)
T PRK06256         89 AWLDIEELIEAAKEAIEEGAGTFCIVASG-RGPS------GKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKE  160 (336)
T ss_pred             cCCCHHHHHHHHHHHHHCCCCEEEEEecC-CCCC------chHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHH
Confidence            3479999999999999999964433 221 1221      2356788888888886521 13345666677788877777


Q ss_pred             cCCCEEe
Q 038230          308 KGAHIVN  314 (480)
Q Consensus       308 ~G~~iIN  314 (480)
                      +|++.++
T Consensus       161 aG~~~v~  167 (336)
T PRK06256        161 AGVDRYN  167 (336)
T ss_pred             hCCCEEe
Confidence            7877665

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=93.17  E-value=0.36  Score=46.50  Aligned_cols=88  Identities=25%  Similarity=0.405  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGA  310 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~  310 (480)
                      +.+++++.++.+.+.|-.+|.|-..+  |++            ..+|+.+++..  .++.|..=| .+++.++.|+++|+
T Consensus        18 ~~~~a~~~~~al~~gGi~~iEiT~~t--~~a------------~~~I~~l~~~~--p~~~vGAGTV~~~e~a~~a~~aGA   81 (196)
T PF01081_consen   18 DPEDAVPIAEALIEGGIRAIEITLRT--PNA------------LEAIEALRKEF--PDLLVGAGTVLTAEQAEAAIAAGA   81 (196)
T ss_dssp             SGGGHHHHHHHHHHTT--EEEEETTS--TTH------------HHHHHHHHHHH--TTSEEEEES--SHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC--ccH------------HHHHHHHHHHC--CCCeeEEEeccCHHHHHHHHHcCC
Confidence            46889999999999999999998643  332            12345455442  477888866 78999999999999


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      ++|-|-.   .++++++.+++++.+++-
T Consensus        82 ~FivSP~---~~~~v~~~~~~~~i~~iP  106 (196)
T PF01081_consen   82 QFIVSPG---FDPEVIEYAREYGIPYIP  106 (196)
T ss_dssp             SEEEESS-----HHHHHHHHHHTSEEEE
T ss_pred             CEEECCC---CCHHHHHHHHHcCCcccC
Confidence            9996553   379999999999999995

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK15108 biotin synthase; Provisional

Probab=93.11  E-value=3.2  Score=43.33  Aligned_cols=134  Identities=19%  Similarity=0.325  Sum_probs=81.0

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAV  306 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL  306 (480)
                      .++++|++++.|+++.+.|++-|-+|+.-..|.      ..+++.+..+++.+++.    ++.+  |+=....+.+++--
T Consensus        74 ~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~------~~~~e~i~~~i~~ik~~----~i~v~~s~G~ls~e~l~~Lk  143 (345)
T PRK15108         74 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH------ERDMPYLEQMVQGVKAM----GLETCMTLGTLSESQAQRLA  143 (345)
T ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC------cchHHHHHHHHHHHHhC----CCEEEEeCCcCCHHHHHHHH
Confidence            348999999999999999999997764222332      24577788888888854    4433  33345677777666


Q ss_pred             HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230          307 GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII  386 (480)
Q Consensus       307 ~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil  386 (480)
                      ++|++.+| ++-.. .++.++       .++   .   +.        .|++        -.+.++.+.++|+.   +-.
T Consensus       144 eAGld~~n-~~leT-~p~~f~-------~I~---~---~~--------~~~~--------rl~~i~~a~~~G~~---v~s  189 (345)
T PRK15108        144 NAGLDYYN-HNLDT-SPEFYG-------NII---T---TR--------TYQE--------RLDTLEKVRDAGIK---VCS  189 (345)
T ss_pred             HcCCCEEe-ecccc-ChHhcC-------CCC---C---CC--------CHHH--------HHHHHHHHHHcCCc---eee
Confidence            77888877 54333 333322       111   0   11        1211        22556667777873   333


Q ss_pred             ecCCCCccChhHHHHHHHhc
Q 038230          387 DPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       387 DPgiGf~k~~~~~~~~lr~l  406 (480)
                      =-.+|.+.+.++-++.+.++
T Consensus       190 g~i~GlgEt~ed~v~~~~~l  209 (345)
T PRK15108        190 GGIVGLGETVKDRAGLLLQL  209 (345)
T ss_pred             EEEEeCCCCHHHHHHHHHHH
Confidence            33356677776666665555

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=92.99  E-value=0.52  Score=47.71  Aligned_cols=72  Identities=15%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      -|||++-..-               ...|+.+.+.|+||||   +|.++..    .++       .+..++..+   ++|
T Consensus        69 PVig~~kigh---------------~~Ea~~L~~~GvDiID---eTe~lrP----ade-------~~~~~K~~f---~vp  116 (287)
T TIGR00343        69 PVMAKVRIGH---------------FVEAQILEALGVDYID---ESEVLTP----ADW-------TFHIDKKKF---KVP  116 (287)
T ss_pred             CEEEEeeccH---------------HHHHHHHHHcCCCEEE---ccCCCCc----HHH-------HHHHHHHHc---CCC
Confidence            3888876542               6788999999999999   5666531    122       234445542   799


Q ss_pred             EEEeCCCHHHHHHHHHcCCCEEec
Q 038230          292 VSVDTFYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~G~~iINd  315 (480)
                      +.=|..+-+.+..+.+.|++||-.
T Consensus       117 fmad~~~l~EAlrai~~GadmI~T  140 (287)
T TIGR00343       117 FVCGARDLGEALRRINEGAAMIRT  140 (287)
T ss_pred             EEccCCCHHHHHHHHHCCCCEEec
Confidence            999999999999999999999973

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=92.98  E-value=1.2  Score=43.17  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeC------------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDT------------  296 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT------------  296 (480)
                      .+.+++++.+++....|||+|.+-...-..        ...+.+...+..|++.   .++|+-  +-|            
T Consensus         7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l~~--------~~~~~~~~~l~~lr~~---~~~piI~T~R~~~eGG~~~~~~~   75 (224)
T PF01487_consen    7 STLEELLAELEEAESSGADAVELRLDYLEN--------DSAEDISEQLAELRRS---LDLPIIFTVRTKEEGGRFQGSEE   75 (224)
T ss_dssp             SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT--------TSHHHHHHHHHHHHHH---CTSEEEEE--BGGGTSSBSS-HH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEeccccc--------cChHHHHHHHHHHHHh---CCCCEEEEecccccCCCCcCCHH
Confidence            578899999999988899999998754332        2244455556666654   245544  432            


Q ss_pred             CCHHHHHHHHHcCCCEEecCCCCCCCch--HHHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHH
Q 038230          297 FYSKVASEAVGKGAHIVNDVSAGQLDPD--MYKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVR  372 (480)
Q Consensus       297 ~~~~v~~aaL~~G~~iINdVsg~~~d~~--m~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~  372 (480)
                      .+.+.++.+++.|+++| ||.....++.  ....+.+.+..+|+. |+ .+.|..                 +.+.+.++
T Consensus        76 ~~~~ll~~~~~~~~d~i-DiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~-----------------~~l~~~~~  137 (224)
T PF01487_consen   76 EYLELLERAIRLGPDYI-DIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSW-----------------EELIELLE  137 (224)
T ss_dssp             HHHHHHHHHHHHTSSEE-EEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---TH-----------------HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEE-EEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCH-----------------HHHHHHHH
Confidence            23478889999998877 5765422222  255667788999986 42 334421                 23667888


Q ss_pred             HHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230          373 DAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL  414 (480)
Q Consensus       373 ~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil  414 (480)
                      .+.+.|-+-=+|..     .+++..+++.+++-.    +.++.|+.
T Consensus       138 ~~~~~gadivKia~-----~~~~~~D~~~l~~~~~~~~~~~~~p~i  178 (224)
T PF01487_consen  138 EMQELGADIVKIAV-----MANSPEDVLRLLRFTKEFREEPDIPVI  178 (224)
T ss_dssp             HHHHTT-SEEEEEE-----E-SSHHHHHHHHHHHHHHHHHTSSEEE
T ss_pred             HHHhcCCCeEEEEe-----ccCCHHHHHHHHHHHHHHhhccCCcEE
Confidence            88888865335544     346677777766654    23578864

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=92.94  E-value=4.2  Score=40.91  Aligned_cols=185  Identities=23%  Similarity=0.303  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG  307 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~  307 (480)
                      -+.|.+...|+...+.||+++=-|+--+|  |-+ .... +   +.+. .+++.++.   .++|+--.-.+++-++.+++
T Consensus        56 Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-e---~gL~-~l~~a~~~---~Gl~vvtEvm~~~~~e~~~~  127 (286)
T COG2876          56 ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-E---EGLK-LLKRAADE---TGLPVVTEVMDVRDVEAAAE  127 (286)
T ss_pred             CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccC-H---HHHH-HHHHHHHH---cCCeeEEEecCHHHHHHHHh
Confidence            57889999999999999999999985433  422 1221 2   2232 23444444   59999999999999999999


Q ss_pred             cCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230          308 KGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII  386 (480)
Q Consensus       308 ~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil  386 (480)
                      + +|||- |-+.+. +=.+++-+-+.+-||++--  |...|            +    +++-...+...+.|-.  +|||
T Consensus       128 y-~Dilq-vGARNMQNF~LLke~G~~~kPvLLKR--g~~aT------------i----eEwL~AAEYI~s~GN~--~vIL  185 (286)
T COG2876         128 Y-ADILQ-VGARNMQNFALLKEVGRQNKPVLLKR--GLSAT------------I----EEWLNAAEYILSHGNG--NVIL  185 (286)
T ss_pred             h-hhHHH-hcccchhhhHHHHHhcccCCCeEEec--Ccccc------------H----HHHHHHHHHHHhCCCC--cEEE
Confidence            8 78775 544331 2345666666778998843  33222            1    2333456677788854  6666


Q ss_pred             e-cCC-CCccChhH-----HHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccH-HHHHHHHHHHHcCCcEEEcCC
Q 038230          387 D-PGL-GFSKKAEH-----NLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDP-ATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       387 D-Pgi-Gf~k~~~~-----~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~-~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      = =|+ +|.+....     ..-++|+  ...+|+++-.|      ..+|.     |.. ..+|.+++|+..-.=++-||.
T Consensus       186 CERGIRtfe~~TRntLDi~aV~~~kq--~THLPVivDpS------H~~Gr-----r~lv~pla~AA~AaGAdglmiEVHp  252 (286)
T COG2876         186 CERGIRTFEKATRNTLDISAVPILKQ--ETHLPVIVDPS------HATGR-----RDLVEPLAKAAIAAGADGLMIEVHP  252 (286)
T ss_pred             EecccccccccccceechHHHHHHHh--hcCCCEEECCC------Ccccc-----hhhHHHHHHHHHhccCCeeEEEecC
Confidence            4 366 46554322     2333454  46889999776      33332     333 344444444433344888998

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=92.92  E-value=0.48  Score=48.02  Aligned_cols=64  Identities=16%  Similarity=0.053  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          231 QSVEAAVSQVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      .++++..+.|+.+.+.  |||.||+|..+..+..-.-.-....+.+..+++++++.   .++||++-..
T Consensus       100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~---~~~pv~vKi~  165 (300)
T TIGR01037       100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK---TDVPVFAKLS  165 (300)
T ss_pred             CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEECC
Confidence            3568888888888775  49999999765433210111112345667788888876   4789888765

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=92.90  E-value=4.4  Score=42.95  Aligned_cols=200  Identities=13%  Similarity=0.183  Sum_probs=112.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH-Hc
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV-GK  308 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL-~~  308 (480)
                      .++.|+.++..++|.++|.|++-|=+.-|+                ..++.+++.    +-..-|=|+-=..+.+=. ..
T Consensus       136 ~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~----------------~~~~~~~~~----~R~~giVSRGGs~~~~WM~~~  195 (423)
T TIGR00190       136 DMDEDDMFRAIEKQAKDGVDFMTIHAGVLL----------------EYVERLKRS----GRITGIVSRGGAILAAWMLHH  195 (423)
T ss_pred             hCCHHHHHHHHHHHHHhCCCEEEEccchhH----------------HHHHHHHhC----CCccCeecCcHHHHHHHHHHc
Confidence            467799999999999999999999864322                234444442    112233333333332221 11


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-  387 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-  387 (480)
                      +..  |=..  +.-+++++++++|++.+=|=..- .|.....-.+   ..=+.|+ ..|-+++++|.++|+-   +++. 
T Consensus       196 ~~E--NPly--e~fD~lLeI~~~yDVtlSLGDgl-RPG~i~DA~D---~aQi~El-~~lgeL~~rA~e~gVQ---vMVEG  263 (423)
T TIGR00190       196 HKE--NPLY--KNFDYILEIAKEYDVTLSLGDGL-RPGCIADATD---RAQISEL-ITLGELVERAREADVQ---CMVEG  263 (423)
T ss_pred             CCc--CchH--HHHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEEC
Confidence            211  1010  01268999999999877653220 1332221111   1113333 3578999999999994   6665 


Q ss_pred             cCCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE-----------
Q 038230          388 PGLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR-----------  455 (480)
Q Consensus       388 PgiGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR-----------  455 (480)
                      ||.-.-...+.|+++.+++ .-+.|..+ |.       -+|.-.+--|. ..++.-.++|...|||++=           
T Consensus       264 PGHvPl~~I~~nv~lqK~l-c~~APfYvLGP-------LvTDiApGYDH-ItsAIGgAiAa~~GAdfLCYVTPaEHL~LP  334 (423)
T TIGR00190       264 PGHVPLDQIEANVRLQKEL-CDEAPFYVLGP-------LVTDIAPGYDH-ITSAIGAAIAGWAGADFLCYVTPKEHLALP  334 (423)
T ss_pred             CCCCcHHHHHHHHHHHHHh-hCCCCeeecCC-------cccccCCCchH-HHHHHHHHHHHHcCCCeEEecCcHHHcCCC
Confidence            6665566678889888886 33667643 32       12222211223 2333347788899999873           


Q ss_pred             -cCChHHHHHHHHHHH
Q 038230          456 -VHNIRDNLDAVKLCD  470 (480)
Q Consensus       456 -vHdV~e~~~al~~~~  470 (480)
                       +.||+|=..|.+++.
T Consensus       335 ~~eDVreGviA~kIAA  350 (423)
T TIGR00190       335 NVEDVKEGVIAYKIAA  350 (423)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence             345666445555543

The thiC ortholog is designated thiA in Bacillus subtilis.

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=92.86  E-value=12  Score=37.94  Aligned_cols=191  Identities=14%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             CCccCCHHHHHHHHHHHHHcC-----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230          227 GGKFQSVEAAVSQVRLMISEG-----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV  301 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~G-----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v  301 (480)
                      .+.+ +.++=++.++.+.+.|     .+.|+++.-        ++  .|.+.+..+++.-.+.   .+ ....=..+.+-
T Consensus        15 ~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~--------~~--~d~~~v~~~~~~~~~~---~~-v~~~~r~~~~d   79 (279)
T cd07947          15 RPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLY--------TE--KDREAVEACLDRGYKF---PE-VTGWIRANKED   79 (279)
T ss_pred             CCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCc--------Ch--HHHHHHHHHHHcCCCC---CE-EEEEecCCHHH
Confidence            3556 8899999999999999     999999531        11  3344443333211001   12 23335567888


Q ss_pred             HHHHHHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHH
Q 038230          302 ASEAVGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVA  364 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~  364 (480)
                      ++.|+++|++.|+=+-...         ..        .++++.++++|..+.+.-.+..+.+           ....+.
T Consensus        80 ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d-----------~~~~v~  148 (279)
T cd07947          80 LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRAD-----------IYGFVL  148 (279)
T ss_pred             HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCC-----------cccchH
Confidence            9999999988776332111         11        1366777888877766443222211           112345


Q ss_pred             HHHHHHHHHHHHCCCCCCCE-EEec-CCCCc----cChhHHHHHHHhc-ccCCCc-EEEeeccccccccccCCCCcCccc
Q 038230          365 SELYSKVRDAELSGIPAWRI-IIDP-GLGFS----KKAEHNLDILLGL-AASHAP-ILIGPSRKRFLGEICNRPSADERD  436 (480)
Q Consensus       365 ~~l~~~i~~a~~~Gi~~~~I-ilDP-giGf~----k~~~~~~~~lr~l-~~~g~P-il~G~SrKsfi~~v~g~~~~~~r~  436 (480)
                      +++.+.++.+.++|.+. .| +-|. |.+..    ..+.+-.++++.+ +..++| +-+|+       +.      .+..
T Consensus       149 ~~~~~~~~~~~~~G~~~-~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~-------H~------Hn~~  214 (279)
T cd07947         149 PFVNKLMKLSKESGIPV-KIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEW-------HG------HNDF  214 (279)
T ss_pred             HHHHHHHHHHHHCCCCE-EEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEE-------Ee------cCCC
Confidence            77888888888999851 23 4576 44322    1124555666666 234444 22232       11      1222


Q ss_pred             HHHHHHHHHHHHcCCcEEEcC
Q 038230          437 PATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       437 ~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      +...+-+..|++.|++++.+.
T Consensus       215 Gla~AN~laA~~aG~~~vd~s  235 (279)
T cd07947         215 YKAVANAVAAWLYGASWVNCT  235 (279)
T ss_pred             ChHHHHHHHHHHhCCCEEEEe
Confidence            334444566888999988764

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=92.82  E-value=2.2  Score=43.55  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----------
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----------  297 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----------  297 (480)
                      ...+.|++++.+++..+.|++-|-+-+. ..|.       .+.+++..+++.|++..  .+  +.+.++           
T Consensus        34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg-~~~~-------~~~~~~~~i~~~Ik~~~--~~--i~~~~~s~~e~~~~~~~  101 (309)
T TIGR00423        34 YVLSLEEILEKVKEAVAKGATEVCIQGG-LNPQ-------LDIEYYEELFRAIKQEF--PD--VHIHAFSPMEVYFLAKN  101 (309)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEecC-CCCC-------CCHHHHHHHHHHHHHHC--CC--ceEEecCHHHHHHHHHH
Confidence            3579999999999999999999888632 2332       22567778888888752  12  444333           


Q ss_pred             ----CHHHHHHHHHcCCCEEecCCCCCCCchH
Q 038230          298 ----YSKVASEAVGKGAHIVNDVSAGQLDPDM  325 (480)
Q Consensus       298 ----~~~v~~aaL~~G~~iINdVsg~~~d~~m  325 (480)
                          ..++++.--++|.+.++.+..+..++++
T Consensus       102 ~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~  133 (309)
T TIGR00423       102 EGLSIEEVLKRLKKAGLDSMPGTGAEILDDSV  133 (309)
T ss_pred             cCCCHHHHHHHHHHcCCCcCCCCcchhcCHHH
Confidence                2455555555677776644333333333

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.77  E-value=1.4  Score=42.87  Aligned_cols=100  Identities=20%  Similarity=0.311  Sum_probs=75.4

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EG  289 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~  289 (480)
                      .+++.|+...           +.++++..++.+++.|-.+|.|=..+  |++            ..+|+.+++.... .+
T Consensus        13 ~~vi~vir~~-----------~~~~a~~~~~al~~~Gi~~iEit~~~--~~a------------~~~i~~l~~~~~~~p~   67 (213)
T PRK06552         13 NGVVAVVRGE-----------SKEEALKISLAVIKGGIKAIEVTYTN--PFA------------SEVIKELVELYKDDPE   67 (213)
T ss_pred             CCEEEEEECC-----------CHHHHHHHHHHHHHCCCCEEEEECCC--ccH------------HHHHHHHHHHcCCCCC
Confidence            4577777655           58999999999999999999998632  432            1244555544211 14


Q ss_pred             CeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          290 KLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       290 ~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +.|..=| .+++.++.|+++|+++|-  |-. .++++++.+++++.+++-
T Consensus        68 ~~vGaGTV~~~~~~~~a~~aGA~Fiv--sP~-~~~~v~~~~~~~~i~~iP  114 (213)
T PRK06552         68 VLIGAGTVLDAVTARLAILAGAQFIV--SPS-FNRETAKICNLYQIPYLP  114 (213)
T ss_pred             eEEeeeeCCCHHHHHHHHHcCCCEEE--CCC-CCHHHHHHHHHcCCCEEC
Confidence            6677766 789999999999999995  443 379999999999999984

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=92.77  E-value=0.56  Score=47.17  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT  296 (480)
                      +.++..+.|+.+.+.|||.|+|+..+-..... -+.....+.+..+++.+++.   .++||++--
T Consensus       109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl  169 (289)
T cd02810         109 SKEDYVELARKIERAGAKALELNLSCPNVGGG-RQLGQDPEAVANLLKAVKAA---VDIPLLVKL  169 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cccccCHHHHHHHHHHHHHc---cCCCEEEEe
Confidence            56888899999999999999999754222110 01122345666778888876   367887753

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=92.57  E-value=3  Score=40.08  Aligned_cols=110  Identities=19%  Similarity=0.129  Sum_probs=68.0

Q ss_pred             cEEEEEEec-CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          211 TSVMGILNL-TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       211 ~~imGIlN~-tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      ..|..-+|- +|   | +|...+.++.++.|+.+.+.||+.|=+..+...-+.   +. +.       ++.+++.   .+
T Consensus        11 ~~vIae~k~~sp---~-~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g---~~-~~-------~~~i~~~---v~   72 (217)
T cd00331          11 LGVIAEVKRASP---S-KGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQG---SL-ED-------LRAVREA---VS   72 (217)
T ss_pred             ceEEEEecCCCC---C-CCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCC---CH-HH-------HHHHHHh---cC
Confidence            455555554 34   2 344556678899999999999999988643222111   11 22       3333443   36


Q ss_pred             CeEEEeC--CCHHHHHHHHHcCCCEEecCCC-CCC--CchHHHHHHhcCCCEEE
Q 038230          290 KLVSVDT--FYSKVASEAVGKGAHIVNDVSA-GQL--DPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       290 ~pISIDT--~~~~v~~aaL~~G~~iINdVsg-~~~--d~~m~~l~~~~~~~vVl  338 (480)
                      +||.+-.  .+++-++++++.|++.+.=... ...  ..++++.++.+|..+++
T Consensus        73 iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v  126 (217)
T cd00331          73 LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLV  126 (217)
T ss_pred             CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEE
Confidence            7888776  6677899999999998852221 111  14566667778877654

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=92.48  E-value=3.6  Score=41.22  Aligned_cols=155  Identities=16%  Similarity=0.209  Sum_probs=86.3

Q ss_pred             HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCC-----C-HHH----HH
Q 038230          240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTF-----Y-SKV----AS  303 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~-----~-~~v----~~  303 (480)
                      |+-..++|.|.|=+|-.     -..|....++-+|    +...++.+.+.   .+.| |+.|..     + ++.    +.
T Consensus        25 A~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~e----m~~~~~~V~r~---~~~p~viaD~~fg~y~~~~~~av~~a~   97 (254)
T cd06557          25 AKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDE----MIYHTRAVRRG---APRALVVADMPFGSYQTSPEQALRNAA   97 (254)
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHH----HHHHHHHHHhc---CCCCeEEEeCCCCcccCCHHHHHHHHH
Confidence            34445679999988721     1245556677544    44445666655   3667 889984     2 332    34


Q ss_pred             HHHH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          304 EAVG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       304 aaL~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      ..++ +|++.|| +.+.....+.++.+.+.+.||+. |..=+|++......+.-..-..+..+.+.++...++++|..  
T Consensus        98 r~~~~aGa~aVk-iEd~~~~~~~I~al~~agipV~g-HiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~--  173 (254)
T cd06557          98 RLMKEAGADAVK-LEGGAEVAETIRALVDAGIPVMG-HIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAF--  173 (254)
T ss_pred             HHHHHhCCeEEE-EcCcHHHHHHHHHHHHcCCCeec-cccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCC--
Confidence            4555 7999999 54432123455666678888773 44324554332211100000112234555677777899995  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                       .++=|++   . .    ++++++ +....|++
T Consensus       174 -~i~lE~v---~-~----~~~~~i~~~v~iP~i  197 (254)
T cd06557         174 -ALVLECV---P-A----ELAKEITEALSIPTI  197 (254)
T ss_pred             -EEEEcCC---C-H----HHHHHHHHhCCCCEE
Confidence             6766776   1 1    244554 34677876

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=92.45  E-value=3.5  Score=40.90  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCC--HHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFY--SKVASEA  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~--~~v~~aa  305 (480)
                      .++..+.+.++++.+.||.-|=|-=+. ..++...+|.++-.+|+.-++++..+.    ++.|  -.|++-  .+-+++|
T Consensus        82 ~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~----~~~I~ARTDa~~~~~~~~dea  157 (238)
T PF13714_consen   82 NDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDP----DFVIIARTDAFLRAEEGLDEA  157 (238)
T ss_dssp             SSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSST----TSEEEEEECHHCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCC----eEEEEEeccccccCCCCHHHH
Confidence            348899999999999999888775331 126667888888888887766666543    4333  348865  5566666


Q ss_pred             HH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          306 VG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       306 L~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      ++       +|||+|- +.+....+++..++++.+.|+.++..
T Consensus       158 I~R~~aY~eAGAD~if-i~~~~~~~~i~~~~~~~~~Pl~v~~~  199 (238)
T PF13714_consen  158 IERAKAYAEAGADMIF-IPGLQSEEEIERIVKAVDGPLNVNPG  199 (238)
T ss_dssp             HHHHHHHHHTT-SEEE-ETTSSSHHHHHHHHHHHSSEEEEETT
T ss_pred             HHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            54       5999998 66665457789999999999988874

...

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=92.28  E-value=4  Score=41.55  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecC
Q 038230          237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDV  316 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdV  316 (480)
                      ...|+.+.+.|+||||   +|.++..    .+       ..+..++..+   ++|+.=|..+-+.+..+.+.|++||-.-
T Consensus        86 ~~Ea~~L~~~GvDiID---~Te~lrp----ad-------~~~~~~K~~f---~~~fmad~~~l~EAlrai~~GadmI~Tt  148 (293)
T PRK04180         86 FVEAQILEALGVDYID---ESEVLTP----AD-------EEYHIDKWDF---TVPFVCGARNLGEALRRIAEGAAMIRTK  148 (293)
T ss_pred             HHHHHHHHHcCCCEEe---ccCCCCc----hH-------HHHHHHHHHc---CCCEEccCCCHHHHHHHHHCCCCeeecc
Confidence            6788999999999999   5665531    11       2334445553   8999999999999999999999999755

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=92.21  E-value=1.1  Score=49.31  Aligned_cols=92  Identities=12%  Similarity=0.087  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i  312 (480)
                      ++..++++.++++|||+|-|-+.   .|.        -..+...|+.|++..  .+++|.. |-..++.++.|.++|+|.
T Consensus       247 ~~~~~r~~~l~~ag~d~i~iD~~---~g~--------~~~~~~~i~~ik~~~--p~~~vi~g~v~t~e~a~~a~~aGaD~  313 (505)
T PLN02274        247 ESDKERLEHLVKAGVDVVVLDSS---QGD--------SIYQLEMIKYIKKTY--PELDVIGGNVVTMYQAQNLIQAGVDG  313 (505)
T ss_pred             ccHHHHHHHHHHcCCCEEEEeCC---CCC--------cHHHHHHHHHHHHhC--CCCcEEEecCCCHHHHHHHHHcCcCE
Confidence            46789999999999999988751   121        123334567777653  3577755 899999999999999999


Q ss_pred             Ee-cC-----------CCC--CC---CchHHHHHHhcCCCEEE
Q 038230          313 VN-DV-----------SAG--QL---DPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       313 IN-dV-----------sg~--~~---d~~m~~l~~~~~~~vVl  338 (480)
                      |- .+           ++.  ..   ...+.+++++++++||.
T Consensus       314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa  356 (505)
T PLN02274        314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA  356 (505)
T ss_pred             EEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE
Confidence            83 11           110  00   02366667777888775

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=92.19  E-value=7.5  Score=41.36  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHcCCcCCCCeEEEeC--CCHH--HHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL-IPVLEAVLTMPEMEGKLVSVDT--FYSK--VASEA  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl-~~vi~~l~~~~~~~~~pISIDT--~~~~--v~~aa  305 (480)
                      .+.++|++.++++-+.+.++|-||.+-             +.+. ..+|+.|++..  ++.+|-+|-  .++.  +++.+
T Consensus       182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L-------------~~~~G~~iVk~Lr~~~--~~~~I~~DLK~~Di~~~vv~~~  246 (391)
T PRK13307        182 PDLEEVERVLSQLPKSDHIIIEAGTPL-------------IKKFGLEVISKIREVR--PDAFIVADLKTLDTGNLEARMA  246 (391)
T ss_pred             CCHHHHHHHHHhcccccceEEEECHHH-------------HHHhCHHHHHHHHHhC--CCCeEEEEecccChhhHHHHHH
Confidence            467899999999887778999999521             2222 34567777652  255666653  2222  26778


Q ss_pred             HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcC
Q 038230          306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHM  341 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~  341 (480)
                      .++|++++. |.++...   .+.++.++++|+.+++ |-.
T Consensus       247 a~aGAD~vT-VH~ea~~~ti~~ai~~akk~GikvgVD~ln  285 (391)
T PRK13307        247 ADATADAVV-ISGLAPISTIEKAIHEAQKTGIYSILDMLN  285 (391)
T ss_pred             HhcCCCEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEEcC
Confidence            889999998 6654322   3467888899988887 543

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=92.15  E-value=4.1  Score=40.97  Aligned_cols=124  Identities=27%  Similarity=0.350  Sum_probs=79.5

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEE----EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI----DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiI----DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      +++||. ++--...++|+|+       ..|||-+    =+|.++         +.+.++.+..+++.-.+.    +.|+.
T Consensus        89 ~l~~~~-~~~~~~~~ve~ai-------~lgadAV~~~Vy~Gse~---------e~~~i~~~~~v~~~a~~~----Gmp~v  147 (265)
T COG1830          89 SLSPDP-NDQVLVATVEDAI-------RLGADAVGATVYVGSET---------EREMIENISQVVEDAHEL----GMPLV  147 (265)
T ss_pred             ccCCCc-ccceeeeeHHHHH-------hCCCcEEEEEEecCCcc---------hHHHHHHHHHHHHHHHHc----CCceE
Confidence            457888 7766666766654       6788754    344332         346677777777766665    88887


Q ss_pred             E----------e--CCCHHHHH----HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          294 V----------D--TFYSKVAS----EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       294 I----------D--T~~~~v~~----aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      +          |  -.+++.+.    .|.+.|||||- +..-...+.+-++++-.++|||+-   |=|++-..       
T Consensus       148 ~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK-~~ytg~~e~F~~vv~~~~vpVvia---GG~k~~~~-------  216 (265)
T COG1830         148 AWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK-TKYTGDPESFRRVVAACGVPVVIA---GGPKTETE-------  216 (265)
T ss_pred             EEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe-ecCCCChHHHHHHHHhCCCCEEEe---CCCCCCCh-------
Confidence            7          4  36677766    66667999997 332221356677777788998873   33443111       


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCC
Q 038230          358 DVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                             .++.+.+..+.++|=.
T Consensus       217 -------~~~l~~~~~ai~aGa~  232 (265)
T COG1830         217 -------REFLEMVTAAIEAGAM  232 (265)
T ss_pred             -------HHHHHHHHHHHHccCc
Confidence                   5667777777777754

>PTZ00413 lipoate synthase; Provisional

Probab=92.07  E-value=6.3  Score=41.78  Aligned_cols=161  Identities=12%  Similarity=0.073  Sum_probs=100.8

Q ss_pred             cEEEEEEecCCC-CCCCCC-----ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230          211 TSVMGILNLTPD-SFSDGG-----KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM  284 (480)
Q Consensus       211 ~~imGIlN~tpD-SFsdgg-----~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~  284 (480)
                      ..|||- .-|.| .|..-+     ...|+++.++.|+...+.|+.+.-|-. .+|+.   + .+.+.+.+..+|++|++.
T Consensus       152 fmilG~-~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTS-v~RDD---L-~D~ga~~~a~~I~~Ir~~  225 (398)
T PTZ00413        152 IMVMGD-HCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTM-VDRDD---L-PDGGASHVARCVELIKES  225 (398)
T ss_pred             eeecCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEE-EcCCC---C-ChhhHHHHHHHHHHHHcc
Confidence            568886 66777 676633     346999999999999999999887653 23432   1 247889999999999975


Q ss_pred             CcCCCCeEEEeCC----CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHH
Q 038230          285 PEMEGKLVSVDTF----YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVC  360 (480)
Q Consensus       285 ~~~~~~pISIDT~----~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~  360 (480)
                      .  .++.|.+=+.    +.+.++.-.++|.+.+| -+-++ -+++++-+....                    ..|++- 
T Consensus       226 ~--p~~~IevligDf~g~~e~l~~L~eAG~dvyn-HNLET-v~rLyp~VRt~~--------------------atYe~s-  280 (398)
T PTZ00413        226 N--PELLLEALVGDFHGDLKSVEKLANSPLSVYA-HNIEC-VERITPYVRDRR--------------------ASYRQS-  280 (398)
T ss_pred             C--CCCeEEEcCCccccCHHHHHHHHhcCCCEEe-ccccc-CHhHHHHHccCc--------------------CCHHHH-
Confidence            2  2455554433    66777777778888888 33333 355554433210                    013221 


Q ss_pred             HHHHHHHHHHHHHHHHC---CCCC-CCEEEecCCCCccChhHHHHHHHhcccCCCcE
Q 038230          361 KQVASELYSKVRDAELS---GIPA-WRIIIDPGLGFSKKAEHNLDILLGLAASHAPI  413 (480)
Q Consensus       361 ~ev~~~l~~~i~~a~~~---Gi~~-~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pi  413 (480)
                             .+.++.+++.   |+.- .-+|    +|.|.+.++-+++++.++..|+-+
T Consensus       281 -------Le~Lr~AKe~f~~gi~tcSGiI----VGLGET~eEvie~m~dLrelGVDi  326 (398)
T PTZ00413        281 -------LKVLEHVKEFTNGAMLTKSSIM----LGLGETEEEVRQTLRDLRTAGVSA  326 (398)
T ss_pred             -------HHHHHHHHHHhcCCceEeeeeE----ecCCCCHHHHHHHHHHHHHcCCcE
Confidence                   1333344433   5531 1122    477888888888888876666654

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=92.04  E-value=0.91  Score=47.07  Aligned_cols=84  Identities=15%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE------eCCC--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSV------DTFY--  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI------DT~~--  298 (480)
                      .+++...+-|+...+.|+|.||||+....|+..    .-+.....+.+..+++++++.   .++||++      |-..  
T Consensus        74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~---v~~pVsvKiR~g~~~~~t~  150 (333)
T PRK11815         74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA---VSIPVTVKHRIGIDDQDSY  150 (333)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH---cCCceEEEEEeeeCCCcCH
Confidence            467788888888888999999999865333211    112345677888899999876   3677776      2211  


Q ss_pred             ---HHHHHHHHHcCCCEEecCCC
Q 038230          299 ---SKVASEAVGKGAHIVNDVSA  318 (480)
Q Consensus       299 ---~~v~~aaL~~G~~iINdVsg  318 (480)
                         .+.++...++|++.|. |.+
T Consensus       151 ~~~~~~~~~l~~aG~d~i~-vh~  172 (333)
T PRK11815        151 EFLCDFVDTVAEAGCDTFI-VHA  172 (333)
T ss_pred             HHHHHHHHHHHHhCCCEEE-EcC
Confidence               2445666677999886 543

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=91.97  E-value=0.51  Score=45.97  Aligned_cols=58  Identities=31%  Similarity=0.480  Sum_probs=37.8

Q ss_pred             CCCCCCCccCCHHHHH-----------------------------HHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHH
Q 038230          222 DSFSDGGKFQSVEAAV-----------------------------SQVRLMISEGADMIDI-GAQSTRPMATKISAEKEL  271 (480)
Q Consensus       222 DSFsdgg~~~~~e~a~-----------------------------~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~  271 (480)
                      ||||.-|+.++.++++                             +.|.++++.|||+|-- |+-|.+|....+.  .-+
T Consensus        91 DsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l--glI  168 (242)
T PF04481_consen   91 DSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL--GLI  168 (242)
T ss_pred             HHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH--HHH
Confidence            7788877776666655                             6788899999999976 5566677543332  234


Q ss_pred             HHHHHHHHHH
Q 038230          272 ERLIPVLEAV  281 (480)
Q Consensus       272 ~rl~~vi~~l  281 (480)
                      +.-.|.+...
T Consensus       169 ekaapTLAaa  178 (242)
T PF04481_consen  169 EKAAPTLAAA  178 (242)
T ss_pred             HHHhHHHHHH
Confidence            4444544433

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=91.80  E-value=1.6  Score=45.03  Aligned_cols=105  Identities=14%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE------eCCC--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSV------DTFY--  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI------DT~~--  298 (480)
                      .++++..+-|+...+.|+|+||||+....|...    .-..-.+.+.+..+++.+++.   .++||++      |...  
T Consensus        74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a---~d~pv~vKiR~G~~~~~~~  150 (321)
T PRK10415         74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA---VDVPVTLKIRTGWAPEHRN  150 (321)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh---cCCceEEEEEccccCCcch
Confidence            467788888887788999999999754221100    000123456677778888775   3778886      3322  


Q ss_pred             H-HHHHHHHHcCCCEEecCCCCC--------CC-chHHHHHHhcCCCEEEE
Q 038230          299 S-KVASEAVGKGAHIVNDVSAGQ--------LD-PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       299 ~-~v~~aaL~~G~~iINdVsg~~--------~d-~~m~~l~~~~~~~vVlm  339 (480)
                      . +.++.+-++|++.|. |.+.+        .+ +.+.++.+..++|||..
T Consensus       151 ~~~~a~~le~~G~d~i~-vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~n  200 (321)
T PRK10415        151 CVEIAQLAEDCGIQALT-IHGRTRACLFNGEAEYDSIRAVKQKVSIPVIAN  200 (321)
T ss_pred             HHHHHHHHHHhCCCEEE-EecCccccccCCCcChHHHHHHHHhcCCcEEEe
Confidence            2 445555667999874 33322        11 22334444467887764

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=91.79  E-value=2  Score=45.57  Aligned_cols=202  Identities=12%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             CCCCCCCcc-----CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC----cCCCCeE
Q 038230          222 DSFSDGGKF-----QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP----EMEGKLV  292 (480)
Q Consensus       222 DSFsdgg~~-----~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~----~~~~~pI  292 (480)
                      =+|=||-+.     ...++.+-.++++-+.|=.-+.+.|..|....-.-=-|+=|+||..+=+.+.+..    ..-.-.+
T Consensus        11 t~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlv   90 (472)
T COG5016          11 TVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLV   90 (472)
T ss_pred             eeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccc
Confidence            356676432     4578889999999999999999999877652211112455888865444332210    0001248


Q ss_pred             EEeCCCHHHHHHH----HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHH
Q 038230          293 SVDTFYSKVASEA----VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQV  363 (480)
Q Consensus       293 SIDT~~~~v~~aa----L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev  363 (480)
                      .-+.|.-+|++.-    .++|.|++-=..+.++-   ..-++.++++|+-+..  +... .|.          .+     
T Consensus        91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~-sPv----------Ht-----  154 (472)
T COG5016          91 GYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTT-SPV----------HT-----  154 (472)
T ss_pred             cccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEecc-CCc----------cc-----
Confidence            8899999987765    44698887655555521   3467888999985542  2222 221          01     


Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHH
Q 038230          364 ASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIAS  442 (480)
Q Consensus       364 ~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~  442 (480)
                      .++..+....+.+.|++  .|.|-=.-|.. ++...+++++.+ +..++|+-+=.       +        .-.+.+.++
T Consensus       155 ~e~yv~~akel~~~g~D--SIciKDmaGll-tP~~ayelVk~iK~~~~~pv~lHt-------H--------~TsG~a~m~  216 (472)
T COG5016         155 LEYYVELAKELLEMGVD--SICIKDMAGLL-TPYEAYELVKAIKKELPVPVELHT-------H--------ATSGMAEMT  216 (472)
T ss_pred             HHHHHHHHHHHHHcCCC--EEEeecccccC-ChHHHHHHHHHHHHhcCCeeEEec-------c--------cccchHHHH
Confidence            25666777888899995  77765544443 344568899988 45788887621       1        111234455


Q ss_pred             HHHHHHcCCcEEEcC
Q 038230          443 ITAGVLGGANIVRVH  457 (480)
Q Consensus       443 ~~~a~~~Ga~IlRvH  457 (480)
                      ...|+++|||+|.+-
T Consensus       217 ylkAvEAGvD~iDTA  231 (472)
T COG5016         217 YLKAVEAGVDGIDTA  231 (472)
T ss_pred             HHHHHHhCcchhhhh
Confidence            667889999998763

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=91.70  E-value=4.6  Score=40.99  Aligned_cols=116  Identities=14%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230          217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID  295 (480)
                      --+||  |.+.|. .|.+...+.++.+++.|++-|=++|. |.-+ ...|. +|..++.. +++.+...   ..+.+.+-
T Consensus        12 a~vTP--f~~dg~-iD~~~l~~li~~l~~~Gv~gi~v~Gs-tGE~-~~Lt~-eEr~~v~~~~~~~~~g~---~pvi~gv~   82 (296)
T TIGR03249        12 FPVTP--FDADGS-FDEAAYRENIEWLLGYGLEALFAAGG-TGEF-FSLTP-AEYEQVVEIAVSTAKGK---VPVYTGVG   82 (296)
T ss_pred             eeeCC--cCCCCC-cCHHHHHHHHHHHHhcCCCEEEECCC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEecC
Confidence            34688  876665 78999999999999999999999974 3332 34554 56666654 45444432   23445554


Q ss_pred             CCCHH---HHHHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          296 TFYSK---VASEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       296 T~~~~---v~~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +.-.+   .++.|-+.|++-+--+...-.   ++++    -.++...+.|+++-+.
T Consensus        83 ~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~  138 (296)
T TIGR03249        83 GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQR  138 (296)
T ss_pred             ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence            32122   223344459997765543211   2333    3344556789998763

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family

Probab=91.69  E-value=8.9  Score=39.45  Aligned_cols=148  Identities=17%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCC-eEEEeCCCHHHHHHHHHc
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGK-LVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL~~  308 (480)
                      +..++.++.|++.|||+|=+.- +.. +...+|+++-.+.+.|    +++.+++.   ... .+-+.......++.-.+.
T Consensus       180 ~~~~~~~~~~~~~Gad~I~i~d-p~a-~~~~lsp~~f~e~~~p~~k~i~~~i~~~---g~~~ilH~CG~~~~~~~~l~~~  254 (340)
T TIGR01463       180 DFVIAYAKAMVEAGADVIAIAD-PFA-SSDLISPETYKEFGLPYQKRLFAYIKEI---GGITVLHICGFTQPILRDIANN  254 (340)
T ss_pred             HHHHHHHHHHHHcCCCEEEecC-Ccc-CccccCHHHHHHHHHHHHHHHHHHHHhc---CCceEEEECCCchhhHHHHHHh
Confidence            3456778889999999987752 221 2346777643433444    44444432   122 344455554556666667


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |++.++ +..   ...+.+..+.++=.+++|-.- .|...-.      ....+++.    +.+.++.+.|    +.|+.|
T Consensus       255 g~d~ls-~d~---~~~l~~~~~~~g~~~~i~Gni-dp~~ll~------~gt~eeI~----~~v~~~l~~~----~~Il~~  315 (340)
T TIGR01463       255 GCFGFS-VDM---KPGMDHAKRVIGGQASLVGNL-SPFSTLM------NGTPEKVK----KLAKEVLYNG----GDIVMP  315 (340)
T ss_pred             CCCEEe-ecC---CCCHHHHHHHcCCceEEEecC-ChHHHhc------CCCHHHHH----HHHHHHHHcC----CeEECC
Confidence            999886 332   234555556677667766332 2321100      01112333    3333333333    469999


Q ss_pred             CCCCc-cChhHHHHHHHh
Q 038230          389 GLGFS-KKAEHNLDILLG  405 (480)
Q Consensus       389 giGf~-k~~~~~~~~lr~  405 (480)
                      |-|.. .+..+|++.+-+
T Consensus       316 gcgi~~~tp~eni~a~v~  333 (340)
T TIGR01463       316 GCDIDWMTPLENLKAMIE  333 (340)
T ss_pred             CCCCCCCCCHHHHHHHHH
Confidence            99874 566777776654

This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=91.68  E-value=0.86  Score=46.28  Aligned_cols=77  Identities=18%  Similarity=0.145  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHH
Q 038230          232 SVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATK--ISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVAS  303 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~  303 (480)
                      +.++..+.|+++.+.| +|.|+||..+  |+...  -......+.+..+++.+++.   .++||++--.    + .+.++
T Consensus       102 ~~~~~~~~a~~~~~aG~~D~iElN~~c--P~~~~gg~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~~~~~~~~~a~  176 (301)
T PRK07259        102 TEEEYAEVAEKLSKAPNVDAIELNISC--PNVKHGGMAFGTDPELAYEVVKAVKEV---VKVPVIVKLTPNVTDIVEIAK  176 (301)
T ss_pred             CHHHHHHHHHHHhccCCcCEEEEECCC--CCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEEcCCCchhHHHHHH
Confidence            5788899999999999 9999998743  32111  11112345777888888876   3788887533    1 23344


Q ss_pred             HHHHcCCCEE
Q 038230          304 EAVGKGAHIV  313 (480)
Q Consensus       304 aaL~~G~~iI  313 (480)
                      .+.++|++.|
T Consensus       177 ~l~~~G~d~i  186 (301)
T PRK07259        177 AAEEAGADGL  186 (301)
T ss_pred             HHHHcCCCEE
Confidence            4445565543

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=91.65  E-value=1.9  Score=42.80  Aligned_cols=107  Identities=13%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEe--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDI--------GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDI--------G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~~~  299 (480)
                      |.+.+.+.+.++++++.||+-|=|        ++- + .+...++.+|-.+++.-+.++....   .+++  --.|++-.
T Consensus        80 ~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~-~-~~~~~~~~ee~~~ki~aa~~a~~~~---~~~~IiARTDa~~~  154 (243)
T cd00377          80 YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGH-H-GGKVLVPIEEFVAKIKAARDARDDL---PDFVIIARTDALLA  154 (243)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccC-C-CCCeecCHHHHHHHHHHHHHHHhcc---CCeEEEEEcCchhc
Confidence            447788999999999999999999        331 1 2345778888888887777776651   1333  34466544


Q ss_pred             ------HHHH---HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230          300 ------KVAS---EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       300 ------~v~~---aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~  342 (480)
                            ++++   ++.++|||++- +.+....+++..++++.+.|++++...
T Consensus       155 ~~~~~~eai~Ra~ay~~AGAD~v~-v~~~~~~~~~~~~~~~~~~Pl~~~~~~  205 (243)
T cd00377         155 GEEGLDEAIERAKAYAEAGADGIF-VEGLKDPEEIRAFAEAPDVPLNVNMTP  205 (243)
T ss_pred             cCCCHHHHHHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHhcCCCCEEEEecC
Confidence                  2333   23446999997 444443477888888889999987553

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=91.58  E-value=1.7  Score=45.16  Aligned_cols=132  Identities=14%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             CcEEEEEEecC-----CC-CCCCCC----------ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230          210 KTSVMGILNLT-----PD-SFSDGG----------KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER  273 (480)
Q Consensus       210 ~~~imGIlN~t-----pD-SFsdgg----------~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r  273 (480)
                      ...+=+++|++     +| .|..-+          ...+.|++++.|++..+.||.-..+|+ |.+-  .    .+++++
T Consensus        47 ~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~a-agr~--~----~~~~~~  119 (335)
T COG0502          47 EVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGA-AGRG--P----GRDMEE  119 (335)
T ss_pred             eEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEE-eccC--C----CccHHH
Confidence            36677777775     45 333322          236899999999999999999888886 3331  1    167888


Q ss_pred             HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec------------CCCCCCCc--hHHHHHHhcCCCEEEE
Q 038230          274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND------------VSAGQLDP--DMYKVVAGLKVPYVAM  339 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd------------Vsg~~~d~--~m~~l~~~~~~~vVlm  339 (480)
                      +...++.+++... -.+-+|+=..+.+.+++.-++|++.+|=            +++-++++  +.+..++++|..++.=
T Consensus       120 i~~~v~~Vk~~~~-le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsG  198 (335)
T COG0502         120 VVEAIKAVKEELG-LEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSG  198 (335)
T ss_pred             HHHHHHHHHHhcC-cHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccc
Confidence            9999999996532 1345777888999999999999999984            22222222  4688889998887754


Q ss_pred             cCCCCCCccc
Q 038230          340 HMRGDPSTMQ  349 (480)
Q Consensus       340 h~~g~p~~~~  349 (480)
                      -.-|.+.+.+
T Consensus       199 gI~GlGEs~e  208 (335)
T COG0502         199 GIVGLGETVE  208 (335)
T ss_pred             eEecCCCCHH
Confidence            4456665543

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=91.45  E-value=17  Score=36.55  Aligned_cols=181  Identities=14%  Similarity=0.183  Sum_probs=109.0

Q ss_pred             EEEEEecCC---CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          213 VMGILNLTP---DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       213 imGIlN~tp---DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      |+|.+-+-|   +=+|+++.-.=.|.|++.|+.+.+.|.|-|=|-=+-..|....+++ +-..-|..++.++++.   ..
T Consensus         4 vIGmvHl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p-~tva~m~~i~~~v~~~---~~   79 (257)
T TIGR00259         4 VIGMVHLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDP-ETVAAMAVIAGQLKSD---VS   79 (257)
T ss_pred             EEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCH-HHHHHHHHHHHHHHHh---cC
Confidence            667666643   2244444333467788888999999999999976667777655665 4455666777888876   37


Q ss_pred             CeEEEeCCC---HHHHHHHHHcCCCEEe--cCCCCC-CC--------chHHHHHHhcCCCEEEEcC----CCCCCccccc
Q 038230          290 KLVSVDTFY---SKVASEAVGKGAHIVN--DVSAGQ-LD--------PDMYKVVAGLKVPYVAMHM----RGDPSTMQNE  351 (480)
Q Consensus       290 ~pISIDT~~---~~v~~aaL~~G~~iIN--dVsg~~-~d--------~~m~~l~~~~~~~vVlmh~----~g~p~~~~~~  351 (480)
                      +|+.|+-.+   ...+.-|...|++.|-  ..+|.- .|        .+++++-++.+..+-++.+    .+.| .. . 
T Consensus        80 ~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~-l~-~-  156 (257)
T TIGR00259        80 IPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVH-LG-N-  156 (257)
T ss_pred             CCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCc-CC-C-
Confidence            888886655   3345555667999875  233210 01        3566676676766666543    2222 11 1 


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc--cCCCcEEEee
Q 038230          352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA--ASHAPILIGP  417 (480)
Q Consensus       352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~  417 (480)
                                   ..+++.+..+...|.. +-||+ -|.+.|+..  +++.++.++  ..+.|+++|-
T Consensus       157 -------------~~~~e~a~~~~~~~~a-Daviv-tG~~TG~~~--d~~~l~~vr~~~~~~Pvllgg  207 (257)
T TIGR00259       157 -------------RDLESIALDTVERGLA-DAVIL-SGKTTGTEV--DLELLKLAKETVKDTPVLAGS  207 (257)
T ss_pred             -------------CCHHHHHHHHHHhcCC-CEEEE-CcCCCCCCC--CHHHHHHHHhccCCCeEEEEC
Confidence                         1234555556666654 23444 466666543  345565552  3578999973

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors

Probab=91.18  E-value=9.4  Score=39.25  Aligned_cols=151  Identities=18%  Similarity=0.192  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC--CCe-EEEeCCCHHHHHHHHHcCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME--GKL-VSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~--~~p-ISIDT~~~~v~~aaL~~G~  310 (480)
                      +..++.++.|+++|||+|=+. ++   .+..+|++.=-+-+.|-++.|.+.....  +++ +-+..-....++.-.+.|+
T Consensus       177 ~~~~~~~~~~ieaGad~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~  252 (335)
T cd00717         177 DATIEYLKAQIEAGAQAVQIF-DS---WAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQLGA  252 (335)
T ss_pred             HHHHHHHHHHHHhCCCEEEEe-Cc---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHhcCC
Confidence            446778889999999999665 33   2346777553333334444433321111  333 3344444456666666799


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      ++++ +..   ...+.+..+.++=.++++-+- .|....       .. .+++.++..+.++.+.    +..+.|+-||-
T Consensus       253 ~~~s-~d~---~~dl~e~k~~~g~~~~i~Gni-~p~~l~-------~~-~e~i~~~v~~~l~~~~----~~~gfIl~~gc  315 (335)
T cd00717         253 DVVG-LDW---RVDLDEARKRLGPKVALQGNL-DPALLY-------AP-KEAIEKEVKRILKAFG----GAPGHIFNLGH  315 (335)
T ss_pred             CEEE-eCC---CCCHHHHHHHhCCCeEEEeCC-Chhhhc-------CC-HHHHHHHHHHHHHHhC----cCCCceeecCC
Confidence            8874 332   246777777788777777642 232111       11 1445555555555543    22378999999


Q ss_pred             CCc-cChhHHHHHHHh
Q 038230          391 GFS-KKAEHNLDILLG  405 (480)
Q Consensus       391 Gf~-k~~~~~~~~lr~  405 (480)
                      |.. .+..+|++.+-+
T Consensus       316 ~i~~~tp~eNi~a~v~  331 (335)
T cd00717         316 GILPDTPPENVKALVE  331 (335)
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            874 667788776543

This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=91.18  E-value=1.9  Score=42.82  Aligned_cols=143  Identities=17%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcc
Q 038230          269 KELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTM  348 (480)
Q Consensus       269 eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~  348 (480)
                      +++.++   .+..++.    ++.....-++.+.++...+.|++.+-=-|+....-.+++.+++.|-|+|+..  |.. + 
T Consensus        56 e~~~~L---~~~~~~~----gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST--G~s-t-  124 (241)
T PF03102_consen   56 EQHKEL---FEYCKEL----GIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILST--GMS-T-  124 (241)
T ss_dssp             HHHHHH---HHHHHHT----T-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE---TT----
T ss_pred             HHHHHH---HHHHHHc----CCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEEC--CCC-C-
Confidence            455554   4555655    8999999999999999999999999866665445789999999999999843  211 1 


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CC-ccChhHHHHHHHhcc-cCCCcEEEeecccccccc
Q 038230          349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GF-SKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGE  425 (480)
Q Consensus       349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf-~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~  425 (480)
                                     .++.++.++.+.+.|-.  +|+|==++ ++ ....+.|+..|..|+ .+++|+  |.|=-+.   
T Consensus       125 ---------------l~EI~~Av~~~~~~~~~--~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~v--G~SDHt~---  182 (241)
T PF03102_consen  125 ---------------LEEIERAVEVLREAGNE--DLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPV--GYSDHTD---  182 (241)
T ss_dssp             ---------------HHHHHHHHHHHHHHCT----EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEE--EEEE-SS---
T ss_pred             ---------------HHHHHHHHHHHHhcCCC--CEEEEecCCCCCCChHHcChHHHHHHHHhcCCCE--EeCCCCC---
Confidence                           13445666777666665  67765444 34 233356777777763 566666  9881111   


Q ss_pred             ccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          426 ICNRPSADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       426 v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                                  +. .+..+|+..||.+|-=|
T Consensus       183 ------------g~-~~~~~AvalGA~vIEKH  201 (241)
T PF03102_consen  183 ------------GI-EAPIAAVALGARVIEKH  201 (241)
T ss_dssp             ------------SS-HHHHHHHHTT-SEEEEE
T ss_pred             ------------Cc-HHHHHHHHcCCeEEEEE
Confidence                        22 23457888999998766

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=91.11  E-value=9.1  Score=38.57  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCC------CHH-HHH---
Q 038230          240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTF------YSK-VAS---  303 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~------~~~-v~~---  303 (480)
                      |+-..++|.|.|=+|-.     -..|....++-+|-    ...++.+.+.   .+. +|+.|..      +++ +++   
T Consensus        28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em----~~h~~~V~r~---~~~p~vvaD~pfg~y~~~~~~av~~a~  100 (264)
T PRK00311         28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDM----IYHTKAVARG---APRALVVADMPFGSYQASPEQALRNAG  100 (264)
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHH----HHHHHHHHhc---CCCCcEEEeCCCCCccCCHHHHHHHHH
Confidence            34445789999988721     13455567775443    3445555554   244 4889883      223 333   


Q ss_pred             HHHH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          304 EAVG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       304 aaL~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      ..++ +|++-|| +-+.....+.++.+.+.++||+. |..=+|++......+.-..-..+..+.+.++...++++|..  
T Consensus       101 r~~~~aGa~aVk-iEdg~~~~~~I~al~~agIpV~g-HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~--  176 (264)
T PRK00311        101 RLMKEAGAHAVK-LEGGEEVAETIKRLVERGIPVMG-HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAF--  176 (264)
T ss_pred             HHHHHhCCeEEE-EcCcHHHHHHHHHHHHCCCCEee-eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCC--
Confidence            3455 6999999 54432123445566678889773 44324554322111100000111234455677777899995  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                       .++=|++ ..       ++.+++ +....|++
T Consensus       177 -~i~lE~v-~~-------~~~~~i~~~l~iP~i  200 (264)
T PRK00311        177 -ALVLECV-PA-------ELAKEITEALSIPTI  200 (264)
T ss_pred             -EEEEcCC-CH-------HHHHHHHHhCCCCEE
Confidence             6666666 11       244444 34677875

>cd03307 Mta_CmuA_like MtaA_CmuA_like family

Probab=91.01  E-value=11  Score=38.57  Aligned_cols=148  Identities=18%  Similarity=0.204  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN  314 (480)
                      ..++.++.|+++|||+|=+.-.+.  +...+|+++=.+-..|.++.+.+..+.....+-++......++.-.+.|++.++
T Consensus       172 ~~~~~~~~~~eaGad~i~i~d~~a--~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~~~~l~~~~~~g~d~~~  249 (326)
T cd03307         172 ACIEYAKAQLEAGADIITIADPTA--SPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNTTPILEYIAQCGFDGIS  249 (326)
T ss_pred             HHHHHHHHHHHcCCCEEEecCCCc--cccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCChhHHHHHHHcCCCeec
Confidence            356778899999999998864221  123457755444444555555443211123344466666667776677999875


Q ss_pred             cCCCCCCCchHHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-
Q 038230          315 DVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-  392 (480)
Q Consensus       315 dVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-  392 (480)
                       +..   ...+.+..+.++-.+++|-.- .|. .+..       ...+++.    +.+.++.+.|.    -|+-||-|. 
T Consensus       250 -~d~---~~dl~e~~~~~g~~~~i~Gni-dp~~~l~~-------gt~e~i~----~~~~~~l~~g~----~Il~~Gc~i~  309 (326)
T cd03307         250 -VDE---KVDVKTAKEIVGGRAALIGNV-SPSQTLLN-------GTPEDVK----AEARKCLEDGV----DILAPGCGIA  309 (326)
T ss_pred             -ccc---cCCHHHHHHHcCCceEEEeCC-ChHHHhcC-------CCHHHHH----HHHHHHHHccC----CEecCcCCCC
Confidence             321   235667777788778877442 232 1211       1112333    33334434453    489999997 


Q ss_pred             ccChhHHHHHHH
Q 038230          393 SKKAEHNLDILL  404 (480)
Q Consensus       393 ~k~~~~~~~~lr  404 (480)
                      ..+..+|++.+-
T Consensus       310 ~~tp~env~a~v  321 (326)
T cd03307         310 PRTPLANLKAMV  321 (326)
T ss_pred             CCCCHHHHHHHH
Confidence            456677776654

MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=90.96  E-value=1.6  Score=45.04  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--------  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--------  298 (480)
                      .+++...+.|+...+.|+|.||||+.-..|...    .-.-..+.+++..+++++++.   .++|||+=++-        
T Consensus        64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~---~~~PVsvKiR~g~~~~~~~  140 (318)
T TIGR00742        64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA---VNIPVTVKHRIGIDPLDSY  140 (318)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH---hCCCeEEEEecCCCCcchH
Confidence            466777777888778899999999743222110    111234567788888888876   36777774421        


Q ss_pred             ---HHHHHHHHHcCCCEEecCCCCC
Q 038230          299 ---SKVASEAVGKGAHIVNDVSAGQ  320 (480)
Q Consensus       299 ---~~v~~aaL~~G~~iINdVsg~~  320 (480)
                         .+.++.+.++|++.|- |.+.+
T Consensus       141 ~~~~~~~~~l~~~G~~~it-vHgRt  164 (318)
T TIGR00742       141 EFLCDFVEIVSGKGCQNFI-VHARK  164 (318)
T ss_pred             HHHHHHHHHHHHcCCCEEE-EeCCc
Confidence               1345666667999884 66653

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=90.94  E-value=1.1  Score=43.11  Aligned_cols=80  Identities=21%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------H
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--------S  299 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--------~  299 (480)
                      ++++..+.|+...++|+|.|+|++....++..    .-+.+...+.+..+++.+++.   .+.|++++..-        .
T Consensus        65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~---~~~~v~vk~r~~~~~~~~~~  141 (231)
T cd02801          65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA---VPIPVTVKIRLGWDDEEETL  141 (231)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh---cCCCEEEEEeeccCCchHHH
Confidence            57888888888888999999999754222100    011223466677888888876   35788887431        1


Q ss_pred             HHHHHHHHcCCCEEe
Q 038230          300 KVASEAVGKGAHIVN  314 (480)
Q Consensus       300 ~v~~aaL~~G~~iIN  314 (480)
                      +.++...+.|++.|.
T Consensus       142 ~~~~~l~~~Gvd~i~  156 (231)
T cd02801         142 ELAKALEDAGASALT  156 (231)
T ss_pred             HHHHHHHHhCCCEEE
Confidence            223334446998884

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=90.84  E-value=6.5  Score=40.10  Aligned_cols=117  Identities=12%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230          217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID  295 (480)
                      ..+||  |-+.|. .|.+...++++.++++|++-|=++|. |.-+ ...+. ||..++.. +++.+...   ..+..++-
T Consensus        14 a~vTP--f~~dg~-iD~~~l~~li~~l~~~Gv~Gi~~~Gs-tGE~-~~Lt~-eEr~~~~~~~~~~~~~~---~pvi~gv~   84 (303)
T PRK03620         14 FPVTP--FDADGS-FDEAAYREHLEWLAPYGAAALFAAGG-TGEF-FSLTP-DEYSQVVRAAVETTAGR---VPVIAGAG   84 (303)
T ss_pred             eeeCC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEecC
Confidence            45688  876665 79999999999999999999999874 3333 23444 56666654 44544432   24455665


Q ss_pred             CCCHHHHH---HHHHcCCCEEecCCCCCC---Cch----HHHHHHhcCCCEEEEcCC
Q 038230          296 TFYSKVAS---EAVGKGAHIVNDVSAGQL---DPD----MYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       296 T~~~~v~~---aaL~~G~~iINdVsg~~~---d~~----m~~l~~~~~~~vVlmh~~  342 (480)
                      +.-.++++   .|-+.|++-+--+...-.   +++    ...++...+.|+++-+..
T Consensus        85 ~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~  141 (303)
T PRK03620         85 GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD  141 (303)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            42223333   333459887654443211   123    334555578999987643

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=90.81  E-value=13  Score=36.97  Aligned_cols=22  Identities=9%  Similarity=0.289  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQ  256 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~e  256 (480)
                      +.+++++   ...+.|.+.|++...
T Consensus        22 ~~~e~~~---~~~~~G~~~iEl~~~   43 (283)
T PRK13209         22 CWLEKLA---IAKTAGFDFVEMSVD   43 (283)
T ss_pred             CHHHHHH---HHHHcCCCeEEEecC
Confidence            4555554   445789999999754

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=90.77  E-value=7.1  Score=42.57  Aligned_cols=160  Identities=14%  Similarity=0.216  Sum_probs=97.3

Q ss_pred             CcEEEEEEecCC----C----CCCCC-----CccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230          210 KTSVMGILNLTP----D----SFSDG-----GKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       210 ~~~imGIlN~tp----D----SFsdg-----g~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~  275 (480)
                      +..+.++||+|.    |    |||..     ...++.|++++.|+...+.|+.-+-| +|+.. |.       .+++.+.
T Consensus        81 ~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p-~~-------~~~eyi~  152 (469)
T PRK09613         81 RIVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDP-PN-------CDIEYIL  152 (469)
T ss_pred             EEEEEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCC-CC-------CCHHHHH
Confidence            345667887663    2    55532     13478999999999999999998888 44321 21       2366777


Q ss_pred             HHHHHHHcCCc----CCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccc
Q 038230          276 PVLEAVLTMPE----MEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNE  351 (480)
Q Consensus       276 ~vi~~l~~~~~----~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~  351 (480)
                      .+|+.|++...    ...+-|++=-...+..++--++|++.+. +.-++.+++.++-          +|..| |..    
T Consensus       153 e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~-l~qETY~~ety~~----------~hp~g-~k~----  216 (469)
T PRK09613        153 ESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQ-LFQETYHKPTYEK----------MHPSG-PKS----  216 (469)
T ss_pred             HHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEEE-eccccCCHHHHHh----------cCCCC-CCC----
Confidence            77777775310    0124566666666666666666766544 2223333433321          23333 210    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230          352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l  406 (480)
                         +|        ++=.+.+++|.++|++  +|=..-.+|.+....+.+.++.++
T Consensus       217 ---~y--------~~Rl~t~~rA~~aGi~--~Vg~G~L~GLge~~~E~~~l~~hl  258 (469)
T PRK09613        217 ---DY--------DWRLTAMDRAMEAGID--DVGIGVLFGLYDYKFEVLGLLMHA  258 (469)
T ss_pred             ---CH--------HHHHHHHHHHHHcCCC--eeCeEEEEcCCCCHHHHHHHHHHH
Confidence               11        2334678899999997  677777788888777777766554

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=90.68  E-value=1.9  Score=45.31  Aligned_cols=109  Identities=20%  Similarity=0.170  Sum_probs=72.6

Q ss_pred             EecCCCCC-CCCCccCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          217 LNLTPDSF-SDGGKFQSVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       217 lN~tpDSF-sdgg~~~~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      +=++|+-| .++  -.+.+++++.|+.+.+.| .|+|++-..+..+........  -....+..+.++..   ..+|+..
T Consensus       221 ~Rls~~d~~~~~--g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~--~~~~~~~a~~i~~~---~~~pvi~  293 (363)
T COG1902         221 VRLSPDDFFDGG--GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG--PGYQVEFAARIKKA---VRIPVIA  293 (363)
T ss_pred             EEECccccCCCC--CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc--cchhHHHHHHHHHh---cCCCEEE
Confidence            44577777 444  468899999999999999 699999765554322111111  12333444555554   3567666


Q ss_pred             eC--CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230          295 DT--FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL  332 (480)
Q Consensus       295 DT--~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~  332 (480)
                      --  +++++++++|+.| +|+|-=-..+-.||.+..-+++-
T Consensus       294 ~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g  334 (363)
T COG1902         294 VGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG  334 (363)
T ss_pred             eCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence            55  7999999999997 99996444444578877666653

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=90.66  E-value=1.2  Score=45.31  Aligned_cols=78  Identities=15%  Similarity=0.076  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCC--CCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRP-MATK--ISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVAS  303 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~  303 (480)
                      +.++..+.|+++.+.|||.||+|.....+ +...  ..-..+.+.+..+++.+++.   .++||++=-.    + .+.++
T Consensus       111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~~~~~~~~~~a~  187 (299)
T cd02940         111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLTPNITDIREIAR  187 (299)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECCCCchhHHHHHH
Confidence            55788888888877899999999754332 1010  01123456677788888865   3677776322    2 24455


Q ss_pred             HHHHcCCCE
Q 038230          304 EAVGKGAHI  312 (480)
Q Consensus       304 aaL~~G~~i  312 (480)
                      .+.++|++-
T Consensus       188 ~~~~~Gadg  196 (299)
T cd02940         188 AAKEGGADG  196 (299)
T ss_pred             HHHHcCCCE
Confidence            555566553

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=90.58  E-value=6.1  Score=40.18  Aligned_cols=114  Identities=15%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...++++.+++.|++-|=++| ||.-+ ...|. +|..++.. +++.....   ..+...+=+.
T Consensus         9 ~TP--f~~dg~-iD~~~l~~lv~~~~~~Gv~gi~v~G-stGE~-~~Ls~-~Er~~l~~~~~~~~~g~---~pvi~gv~~~   79 (294)
T TIGR02313         9 ITP--FKRNGD-IDEEALRELIEFQIEGGSHAISVGG-TSGEP-GSLTL-EERKQAIENAIDQIAGR---IPFAPGTGAL   79 (294)
T ss_pred             eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cCccc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEECCcc
Confidence            577  766665 7999999999999999999999998 44433 24454 55555544 45544432   1233344333


Q ss_pred             CHH-H---HHHHHHcCCCEEecCCCCCC---CchH----HHHHHhc-CCCEEEEcC
Q 038230          298 YSK-V---ASEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGL-KVPYVAMHM  341 (480)
Q Consensus       298 ~~~-v---~~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~-~~~vVlmh~  341 (480)
                      +.+ +   ++.|-+.|+|-+--+.-.-.   ++++    ..++... +.|+++-+.
T Consensus        80 ~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~  135 (294)
T TIGR02313        80 NHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI  135 (294)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence            333 2   34555569998876654211   1333    3345556 799998664

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=90.56  E-value=9.4  Score=41.39  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCC--HHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFY--SKVASE  304 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~--~~v~~a  304 (480)
                      +.+.+..++.|+++.+.|||.|=|.=  |.   ....+ ++..+   +++.+++.   .++||.+   ||+-  ....-+
T Consensus       150 ~~~~~~~~~~a~~l~~~Gad~I~i~D--t~---G~l~P-~~v~~---lv~alk~~---~~~pi~~H~Hnt~GlA~AN~la  217 (448)
T PRK12331        150 VHTIDYFVKLAKEMQEMGADSICIKD--MA---GILTP-YVAYE---LVKRIKEA---VTVPLEVHTHATSGIAEMTYLK  217 (448)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcC--CC---CCCCH-HHHHH---HHHHHHHh---cCCeEEEEecCCCCcHHHHHHH
Confidence            46889999999999999999998861  11   11122 44444   45666665   3689999   4433  455678


Q ss_pred             HHHcCCCEEecC
Q 038230          305 AVGKGAHIVNDV  316 (480)
Q Consensus       305 aL~~G~~iINdV  316 (480)
                      |+++|+++|..-
T Consensus       218 AieaGad~vD~s  229 (448)
T PRK12331        218 AIEAGADIIDTA  229 (448)
T ss_pred             HHHcCCCEEEee
Confidence            899999998743

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=90.55  E-value=2.1  Score=46.29  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i  312 (480)
                      ++..++++.++++|+|+|-|-.  +....         ..+...|+.|++.+  .++||.. +-..++.+++++++|++.
T Consensus       223 ~~~~~r~~~L~~aG~d~I~vd~--a~g~~---------~~~~~~i~~i~~~~--~~~~vi~G~v~t~~~a~~l~~aGad~  289 (450)
T TIGR01302       223 EFDKERAEALVKAGVDVIVIDS--SHGHS---------IYVIDSIKEIKKTY--PDLDIIAGNVATAEQAKALIDAGADG  289 (450)
T ss_pred             hhHHHHHHHHHHhCCCEEEEEC--CCCcH---------hHHHHHHHHHHHhC--CCCCEEEEeCCCHHHHHHHHHhCCCE
Confidence            4678899999999999999974  22111         23445677777653  4788888 999999999999999999


Q ss_pred             E
Q 038230          313 V  313 (480)
Q Consensus       313 I  313 (480)
                      |
T Consensus       290 i  290 (450)
T TIGR01302       290 L  290 (450)
T ss_pred             E
Confidence            8

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04732 HisA HisA

Probab=90.51  E-value=6.2  Score=38.13  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGAH  311 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~~  311 (480)
                      .+.++.|+.+.+.|||.|.|=-.+..-...    ...    .+.++.+.+.   .++|+.++-  .+++-++++++.|++
T Consensus        29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~----~~~----~~~i~~i~~~---~~~pv~~~GgI~~~e~~~~~~~~Gad   97 (234)
T cd04732          29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGE----PVN----LELIEEIVKA---VGIPVQVGGGIRSLEDIERLLDLGVS   97 (234)
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCCccccCC----CCC----HHHHHHHHHh---cCCCEEEeCCcCCHHHHHHHHHcCCC
Confidence            357778889999999877763221110000    011    2345556655   368888854  899999999999988


Q ss_pred             EEecCCCCCCCch-HHHHHHhcCC-CEEEEcC--CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230          312 IVNDVSAGQLDPD-MYKVVAGLKV-PYVAMHM--RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID  387 (480)
Q Consensus       312 iINdVsg~~~d~~-m~~l~~~~~~-~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD  387 (480)
                      .+-=-+..-.+++ +.+++++++- .+++.-.  .|...+.... ... .       ....+.++.+.+.|..  .|++=
T Consensus        98 ~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~-~~~-~-------~~~~~~~~~~~~~ga~--~iii~  166 (234)
T cd04732          98 RVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL-ETS-E-------VSLEELAKRFEELGVK--AIIYT  166 (234)
T ss_pred             EEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe-eec-C-------CCHHHHHHHHHHcCCC--EEEEE
Confidence            6542222222444 5666666765 5554321  1111000000 000 0       1223556677788886  55553


Q ss_pred             cC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          388 PG--LGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       388 Pg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      .-  -|..  ...++++++++ +..+.|++.+
T Consensus       167 ~~~~~g~~--~g~~~~~i~~i~~~~~ipvi~~  196 (234)
T cd04732         167 DISRDGTL--SGPNFELYKELAAATGIPVIAS  196 (234)
T ss_pred             eecCCCcc--CCCCHHHHHHHHHhcCCCEEEe
Confidence            21  1221  12357788887 3468998875

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK13352 thiamine biosynthesis protein ThiC; Provisional

Probab=90.38  E-value=7.8  Score=41.31  Aligned_cols=184  Identities=14%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH-HcC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV-GKG  309 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL-~~G  309 (480)
                      ++.++.++..++|.++|.|++-|=+.-|+                ..++.+++.    +-...|=|+-=..+.+=. ..+
T Consensus       140 mt~d~~~~~ie~qa~~GVDfmTiHcGi~~----------------~~~~~~~~~----~R~~giVSRGGs~~~~WM~~n~  199 (431)
T PRK13352        140 MTEDDLFDVIEKQAKDGVDFMTIHCGVTR----------------ETLERLKKS----GRIMGIVSRGGSFLAAWMLHNN  199 (431)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEccchhH----------------HHHHHHHhc----CCccCeecCCHHHHHHHHHHcC
Confidence            56789999999999999999999864332                233444432    112233333333332221 122


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-c
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-P  388 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-P  388 (480)
                      ..  |=..  +.-+++++++++|++.+=|=.-- .|.......+   ..=+.|+ ..+-+++++|.++|+-   +++. |
T Consensus       200 ~E--NPly--e~fD~lLeI~~~yDVtlSLGDgl-RPG~i~Da~D---~aQi~El-~~lgeL~~RA~e~gVQ---vMVEGP  267 (431)
T PRK13352        200 KE--NPLY--EHFDYLLEILKEYDVTLSLGDGL-RPGCIADATD---RAQIQEL-ITLGELVKRAREAGVQ---VMVEGP  267 (431)
T ss_pred             Cc--CchH--HHHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEECC
Confidence            11  1010  01278999999999876653210 1332222111   1113333 3577899999999995   5554 6


Q ss_pred             CCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230          389 GLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR  455 (480)
Q Consensus       389 giGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR  455 (480)
                      |.-.-...+.|+++.+++ ..+.|..+ |.       -+|.-.+--|.. .++.-.++|...|||++=
T Consensus       268 GHvPl~~I~~nv~l~K~l-c~~APfYvLGP-------LvTDiApGYDHI-t~AIGgAiAa~~GAdfLC  326 (431)
T PRK13352        268 GHVPLDQIEANVKLQKRL-CHGAPFYVLGP-------LVTDIAPGYDHI-TSAIGGAIAAAAGADFLC  326 (431)
T ss_pred             CCCCHHHHHHHHHHHHHh-hCCCCceecCc-------cccccCCCchHH-HHHHHHHHHHhcCCCeEE
Confidence            655566678889998886 33667643 32       122222112332 333347888999999874

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=90.35  E-value=7.1  Score=37.91  Aligned_cols=162  Identities=15%  Similarity=0.139  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G  309 (480)
                      +.++.|+.+.+.|++   ++|+.+.-+..+.   .        .++++.+.+.   +++|+.+  +-...+-+++.++.|
T Consensus        31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~---n--------~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G   96 (232)
T TIGR03572        31 DPVNAARIYNAKGADELIVLDIDASKRGREP---L--------FELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLG   96 (232)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCcccCCCC---C--------HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcC
Confidence            567788888899999   9999986443321   1        2345555554   3678888  668888999999999


Q ss_pred             CCEEecCCCCC-CCch-HHHHHHhcCCC-EEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230          310 AHIVNDVSAGQ-LDPD-MYKVVAGLKVP-YVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI  384 (480)
Q Consensus       310 ~~iINdVsg~~-~d~~-m~~l~~~~~~~-vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I  384 (480)
                      ++.+- +.... .+++ +.++++.|+-. +++. .. .+...+..+-....+.+.   ......+.+..+.++|+.  .|
T Consensus        97 ~~~vi-lg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~G~d--~i  170 (232)
T TIGR03572        97 ADKVS-INTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRA---TGRDPVEWAREAEQLGAG--EI  170 (232)
T ss_pred             CCEEE-EChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCccc---CCCCHHHHHHHHHHcCCC--EE
Confidence            87552 32221 2444 55566667655 3322 22 221100000000000000   001123556677889996  56


Q ss_pred             EEecCCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          385 IIDPGLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       385 ilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      ++-.-..-+.....++++++++ +..+.|++.+
T Consensus       171 ~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~  203 (232)
T TIGR03572       171 LLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL  203 (232)
T ss_pred             EEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE
Confidence            6654111111122357888887 3468898764

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PLN02433 uroporphyrinogen decarboxylase

Probab=90.31  E-value=9.5  Score=39.58  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHH
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGKLVSV--DTFYSKVASEAVG  307 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~  307 (480)
                      +...+.++.|+++||++|=|. .|   -+..+|+++=.+-+.|    +++.+++..  .+.|+.+  .-. ...++.-.+
T Consensus       179 ~~~~~~~~~~ieaGa~~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~--~~~~~ilh~cG~-~~~~~~~~~  251 (345)
T PLN02433        179 DAVIEYVDYQIDAGAQVVQIF-DS---WAGHLSPVDFEEFSKPYLEKIVDEVKARH--PDVPLILYANGS-GGLLERLAG  251 (345)
T ss_pred             HHHHHHHHHHHHcCCCEEEEe-cC---ccccCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEeCCC-HHHHHHHHh
Confidence            445677888999999988764 22   2346777553333333    445554321  1345444  222 245666666


Q ss_pred             cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230          308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID  387 (480)
Q Consensus       308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD  387 (480)
                      .|++.+| +.   ....+.+..+..+-.++++-+- .| .+-.   -.    -+++.+...+.++.+..     ..-|+-
T Consensus       252 ~~~~~i~-~d---~~~dl~e~~~~~g~~~~l~GNi-~p-~ll~---gt----~e~i~~~v~~~i~~~~~-----~g~Il~  313 (345)
T PLN02433        252 TGVDVIG-LD---WTVDMADARRRLGSDVAVQGNV-DP-AVLF---GS----KEAIEKEVRDVVKKAGP-----QGHILN  313 (345)
T ss_pred             cCCCEEE-cC---CCCCHHHHHHHhCCCeEEEeCC-Cc-hhhC---CC----HHHHHHHHHHHHHHcCC-----CCeEEe
Confidence            7999887 32   1245666666677667776542 13 2211   11    23344444455554322     237999


Q ss_pred             cCCCCc-cChhHHHHHHHhc-ccCCCcEE
Q 038230          388 PGLGFS-KKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       388 PgiGf~-k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                      ||-|.. .+..+|++.+-+. +..+.+++
T Consensus       314 ~Gc~i~~~tp~eNi~a~v~av~~~~~~~~  342 (345)
T PLN02433        314 LGHGVLVGTPEENVAHFFDVARELRYEMI  342 (345)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhChhhh
Confidence            999974 5667787766553 44455543

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=90.31  E-value=21  Score=35.59  Aligned_cols=185  Identities=18%  Similarity=0.276  Sum_probs=107.4

Q ss_pred             CCcEEEEEEecCC--CCCCCCC-ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230          209 LKTSVMGILNLTP--DSFSDGG-KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP  285 (480)
Q Consensus       209 ~~~~imGIlN~tp--DSFsdgg-~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~  285 (480)
                      .+.-+.|++-+-|  -|-|+++ .-.=.|.|++.|.++.+.|+|-|=+==.-..|....+++ +-..-|.-+++++++. 
T Consensus         6 ~~k~vIGvvHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~-~tvaaMa~iv~~v~r~-   83 (263)
T COG0434           6 TKKPVIGVVHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGP-ETVAAMAVIVREVVRE-   83 (263)
T ss_pred             CCCceEEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCh-HHHHHHHHHHHHHHHh-
Confidence            3445888888765  2445544 222356777888999999999888865567788777776 4466677788888876 


Q ss_pred             cCCCCeEEEeCCC-HHHHHHHHH--cCCCEEe--cCCCC--C----CCc---hHHHHHHhcCCCEEEEcC----CCCCCc
Q 038230          286 EMEGKLVSVDTFY-SKVASEAVG--KGAHIVN--DVSAG--Q----LDP---DMYKVVAGLKVPYVAMHM----RGDPST  347 (480)
Q Consensus       286 ~~~~~pISIDT~~-~~v~~aaL~--~G~~iIN--dVsg~--~----~d~---~m~~l~~~~~~~vVlmh~----~g~p~~  347 (480)
                        ..+|+.|.-.+ ..+...++.  .|++.|-  -.++-  +    .+.   +++++-+..+..+=++.+    .+.|-.
T Consensus        84 --v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~  161 (263)
T COG0434          84 --VSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLG  161 (263)
T ss_pred             --ccccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccC
Confidence              48999998776 333333333  3888774  33331  1    112   344444555544443322    122211


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccCh-hHHHHHHHhcccCCCcEEEee
Q 038230          348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKA-EHNLDILLGLAASHAPILIGP  417 (480)
Q Consensus       348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~-~~~~~~lr~l~~~g~Pil~G~  417 (480)
                      .                ..+++.+..+.+.|.. +-+|+ -|-..|... .+.+++.++  ..+.|+|+|-
T Consensus       162 ~----------------~~~~~~v~dtver~~a-DaVI~-tG~~TG~~~d~~el~~a~~--~~~~pvlvGS  212 (263)
T COG0434         162 N----------------RSLEEAVKDTVERGLA-DAVIV-TGSRTGSPPDLEELKLAKE--AVDTPVLVGS  212 (263)
T ss_pred             C----------------cCHHHHHHHHHHccCC-CEEEE-ecccCCCCCCHHHHHHHHh--ccCCCEEEec
Confidence            0                1244555565566665 33443 455444432 222444444  3569999984

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=90.28  E-value=14  Score=38.41  Aligned_cols=139  Identities=14%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eC----C--CHH-HHHHH-
Q 038230          240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DT----F--YSK-VASEA-  305 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT----~--~~~-v~~aa-  305 (480)
                      |+-+-++|+|+|=+|=.     -..+...+|+    ++.++...+.+++-   .+.+++| |-    |  +++ +++.| 
T Consensus        48 A~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vt----ld~mi~H~~aV~Rg---a~~a~vVaDmPfgSY~~s~e~av~nA~  120 (332)
T PLN02424         48 AVHVDSAGIDVCLVGDSAAMVVHGHDTTLPIT----LDEMLVHCRAVARG---ANRPLLVGDLPFGSYESSTDQAVESAV  120 (332)
T ss_pred             HHHHHHcCCCEEEECCcHHHHhcCCCCCCCcC----HHHHHHHHHHHhcc---CCCCEEEeCCCCCCCCCCHHHHHHHHH
Confidence            45556789999999811     0112333566    44555566777765   3667777 53    3  343 33333 


Q ss_pred             --HH-cCCCEEecCCCC-CCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          306 --VG-KGAHIVNDVSAG-QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       306 --L~-~G~~iINdVsg~-~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                        ++ .|++.|| +-|+ ...-+.++.+.+.|+||+. |..=+|++....-.|.-..--.+-...+.+....++++|.. 
T Consensus       121 rl~~eaGa~aVK-lEGg~~~~~~~I~~l~~~GIPV~g-HiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf-  197 (332)
T PLN02424        121 RMLKEGGMDAVK-LEGGSPSRVTAAKAIVEAGIAVMG-HVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCF-  197 (332)
T ss_pred             HHHHHhCCcEEE-ECCCcHHHHHHHHHHHHcCCCEEE-eecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCc-
Confidence              23 6999999 6655 2123444455588999883 43224443322111000000112223455677778899996 


Q ss_pred             CCEEEecCC
Q 038230          382 WRIIIDPGL  390 (480)
Q Consensus       382 ~~IilDPgi  390 (480)
                        -|+=|++
T Consensus       198 --~ivLE~V  204 (332)
T PLN02424        198 --AVVLECV  204 (332)
T ss_pred             --EEEEcCC
Confidence              4444455

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=90.26  E-value=5.7  Score=41.24  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-------------EeC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-------------VDT  296 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-------------IDT  296 (480)
                      ..++|++++.+++..+.|+.-|-+-+. ..|.       .+.+++..+++.|++..  .++.++             ++.
T Consensus        69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG-~~p~-------~~~~~~~~i~~~Ik~~~--~~i~~~~~t~~ei~~~~~~~g~  138 (343)
T TIGR03551        69 LLSLEEIAERAAEAWKAGATEVCIQGG-IHPD-------LDGDFYLDILRAVKEEV--PGMHIHAFSPMEVYYGARNSGL  138 (343)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEeC-CCCC-------CCHHHHHHHHHHHHHHC--CCceEEecCHHHHHHHHHHcCC
Confidence            379999999999999999998888631 1232       24677788888888752  234332             345


Q ss_pred             CCHHHHHHHHHcCCCEEec
Q 038230          297 FYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       297 ~~~~v~~aaL~~G~~iINd  315 (480)
                      ..++++++--++|.+.++.
T Consensus       139 ~~~e~l~~LkeAGl~~i~~  157 (343)
T TIGR03551       139 SVEEALKRLKEAGLDSMPG  157 (343)
T ss_pred             CHHHHHHHHHHhCcccccC
Confidence            5677777767778777763

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=90.22  E-value=1.3  Score=47.23  Aligned_cols=84  Identities=18%  Similarity=0.063  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH-HHHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTR-PMAT--KISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS-KVAS  303 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStr-P~a~--~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~-~v~~  303 (480)
                      +.++..+.|+.+.+.|||.||+|..+.. +...  ...-.+..+.+..+++.+++.   .++||++    |..+. +.++
T Consensus       111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKl~p~~~~~~~~a~  187 (420)
T PRK08318        111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG---SRLPVIVKLTPNITDIREPAR  187 (420)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc---cCCcEEEEcCCCcccHHHHHH
Confidence            4577888888888899999999975532 1100  011113456677788888876   3677665    44343 5566


Q ss_pred             HHHHcCCC---EEecCCC
Q 038230          304 EAVGKGAH---IVNDVSA  318 (480)
Q Consensus       304 aaL~~G~~---iINdVsg  318 (480)
                      ++.++|++   ++|.+.+
T Consensus       188 ~~~~~Gadgi~~~Nt~~~  205 (420)
T PRK08318        188 AAKRGGADAVSLINTINS  205 (420)
T ss_pred             HHHHCCCCEEEEecccCc
Confidence            66777766   5565544

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=90.17  E-value=8.4  Score=39.00  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=70.0

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT  296 (480)
                      -+||  |-+.|. .|.+...++++.+++.|++-|=++|. |.-+ ...|. ||..++.. +++.....   ..+.+++-.
T Consensus         8 ~vTP--f~~dg~-iD~~~l~~l~~~l~~~Gv~gi~v~Gs-tGE~-~~Ls~-eEr~~l~~~~~~~~~~~---~pvi~gv~~   78 (289)
T cd00951           8 PVTH--FDADGS-FDEDAYRAHVEWLLSYGAAALFAAGG-TGEF-FSLTP-DEYAQVVRAAVEETAGR---VPVLAGAGY   78 (289)
T ss_pred             eecC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CCEEEecCC
Confidence            4688  766664 79999999999999999999999983 4433 34454 56666655 44444332   244555543


Q ss_pred             CCHHHHH---HHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          297 FYSKVAS---EAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~v~~---aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      .-.++++   .|-++|++-+-.+...-.   ++++    ..++...+.|+++-+.
T Consensus        79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~  133 (289)
T cd00951          79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR  133 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            2223332   334459997765544211   1333    3344457889888663

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=90.16  E-value=4.4  Score=41.92  Aligned_cols=85  Identities=21%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCC---------CCCCC----CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQ---------STRPM----ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--  297 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~e---------StrP~----a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--  297 (480)
                      .++..+-|++..++|.|.|+|.+.         |...+    .=.-|.+.-++-+..+|++|++... .+.+|++|-.  
T Consensus       148 i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris~~  226 (338)
T cd04733         148 IDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLNSA  226 (338)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcHH
Confidence            344556778888999999999754         32221    1123567778888899999998642 2688998763  


Q ss_pred             -------CHHHH----HHHHHcCCCEEecCCCC
Q 038230          298 -------YSKVA----SEAVGKGAHIVNDVSAG  319 (480)
Q Consensus       298 -------~~~v~----~aaL~~G~~iINdVsg~  319 (480)
                             +++.+    +..-+.|+++|+ |+++
T Consensus       227 ~~~~~g~~~eea~~ia~~Le~~Gvd~ie-v~~g  258 (338)
T cd04733         227 DFQRGGFTEEDALEVVEALEEAGVDLVE-LSGG  258 (338)
T ss_pred             HcCCCCCCHHHHHHHHHHHHHcCCCEEE-ecCC
Confidence                   43333    233335999997 4443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=90.14  E-value=12  Score=36.15  Aligned_cols=90  Identities=12%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             CCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE------------
Q 038230          226 DGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS------------  293 (480)
Q Consensus       226 dgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS------------  293 (480)
                      .||...+.+.+.+.|+.+.+.|+..+.+|.    +        +.++.       +++.   .++|+.            
T Consensus        19 ~~~~~~~~~~i~~~a~~~~~~G~~~~~~~~----~--------~~~~~-------i~~~---~~iPil~~~~~~~~~~~~   76 (219)
T cd04729          19 PGEPLHSPEIMAAMALAAVQGGAVGIRANG----V--------EDIRA-------IRAR---VDLPIIGLIKRDYPDSEV   76 (219)
T ss_pred             CCCCcCcHHHHHHHHHHHHHCCCeEEEcCC----H--------HHHHH-------HHHh---CCCCEEEEEecCCCCCCc
Confidence            366677888999999999999999999742    1        22322       2222   244542            


Q ss_pred             -EeCCCHHHHHHHHHcCCCEEecCCCCC------CCchHHHHHHhcC-CCEEE
Q 038230          294 -VDTFYSKVASEAVGKGAHIVNDVSAGQ------LDPDMYKVVAGLK-VPYVA  338 (480)
Q Consensus       294 -IDT~~~~v~~aaL~~G~~iINdVsg~~------~d~~m~~l~~~~~-~~vVl  338 (480)
                       ||. +.+-++.|.++|+++|-......      ...++++.+++++ .++++
T Consensus        77 ~ig~-~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv  128 (219)
T cd04729          77 YITP-TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA  128 (219)
T ss_pred             eeCC-CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence             332 35578999999999775432221      1246777777887 55544

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK05481 lipoyl synthase; Provisional

Probab=90.07  E-value=7.4  Score=39.55  Aligned_cols=142  Identities=14%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASE  304 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~a  304 (480)
                      +..+++++++.|+++.+.|+.-|-+=++.....    + +.....+..+++.|++..  .++.|.+-|.+    .+.+..
T Consensus        78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~----~-~~~~~~l~~Ll~~I~~~~--p~irI~~l~~~~~~~~e~L~~  150 (289)
T PRK05481         78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDL----P-DGGAQHFAETIRAIRELN--PGTTIEVLIPDFRGRMDALLT  150 (289)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCc----c-cccHHHHHHHHHHHHhhC--CCcEEEEEccCCCCCHHHHHH
Confidence            347899999999999999998887765432110    0 012345666777777642  24555555554    367777


Q ss_pred             HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCC
Q 038230          305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAW  382 (480)
Q Consensus       305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~  382 (480)
                      ..++|+.+++..- +. .+++++.          |+. +          +.+        +...+.++.+.+.  |+.  
T Consensus       151 l~~ag~~i~~~~~-et-s~~vlk~----------m~r-~----------~t~--------e~~le~i~~ar~~~pgi~--  197 (289)
T PRK05481        151 VLDARPDVFNHNL-ET-VPRLYKR----------VRP-G----------ADY--------ERSLELLKRAKELHPGIP--  197 (289)
T ss_pred             HHhcCcceeeccc-cC-hHHHHHH----------hCC-C----------CCH--------HHHHHHHHHHHHhCCCCe--
Confidence            7788888877442 11 1233322          111 1          111        3345777888888  885  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhcccCCC
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGLAASHA  411 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l~~~g~  411 (480)
                       +--|=.+||+.+.++-.+++..++..++
T Consensus       198 -~~t~~IvGfGET~ed~~~tl~~lrel~~  225 (289)
T PRK05481        198 -TKSGLMVGLGETDEEVLEVMDDLRAAGV  225 (289)
T ss_pred             -EeeeeEEECCCCHHHHHHHHHHHHhcCC
Confidence             6677778999888776666666543443

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

Probab=90.01  E-value=17  Score=38.98  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CCCeEEEeCCCHH-HHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EGKLVSVDTFYSK-VASEA  305 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~~pISIDT~~~~-v~~aa  305 (480)
                      |..++.++-++.|+++-+.|.++|.+|..+..|+        +.+-+    +.+...... ....+.-....-+ -++++
T Consensus        18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~--------~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~ea~   85 (409)
T COG0119          18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPG--------DFEFV----RAIAEKAGLFICALIAALARAIKRDIEAL   85 (409)
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChh--------hHHHH----HHHHHhcCcccchhhhhhHHhHHhhHHHH
Confidence            4458899999999999999999999998655543        22222    222211000 0122222233333 67788


Q ss_pred             HHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHH
Q 038230          306 VGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASE  366 (480)
Q Consensus       306 L~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~  366 (480)
                      +++|++.|--+.+..         ..        .+..+.+++++..+..  .+..   .     .+          .++
T Consensus        86 ~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~---r-----t~----------~~~  147 (409)
T COG0119          86 LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDAT---R-----TD----------PEF  147 (409)
T ss_pred             HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccc---c-----CC----------HHH
Confidence            888877654443321         01        1357778889977773  3322   1     11          167


Q ss_pred             HHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230          367 LYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       367 l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l  406 (480)
                      +.+.++.+..+|..  .|.+ |- +|.+ ++.+..++++.+
T Consensus       148 l~~~~~~~~~~ga~--~i~l~DT-vG~~-~P~~~~~~i~~l  184 (409)
T COG0119         148 LAEVVKAAIEAGAD--RINLPDT-VGVA-TPNEVADIIEAL  184 (409)
T ss_pred             HHHHHHHHHHcCCc--EEEECCC-cCcc-CHHHHHHHHHHH
Confidence            77888888888875  3333 32 3332 234455666665

>PLN02417 dihydrodipicolinate synthase

Probab=90.00  E-value=6.5  Score=39.62  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT  296 (480)
                      -+||  |-+.|. .|.+...++++.+++.|++-|=++|- |.-+ ...+ .+|..++.. +++.+...   ..+...+-+
T Consensus         9 ~~TP--f~~~g~-iD~~~~~~~i~~l~~~Gv~Gi~~~Gs-tGE~-~~ls-~~Er~~~~~~~~~~~~~~---~pvi~gv~~   79 (280)
T PLN02417          9 IKTP--YLPDGR-FDLEAYDSLVNMQIENGAEGLIVGGT-TGEG-QLMS-WDEHIMLIGHTVNCFGGK---IKVIGNTGS   79 (280)
T ss_pred             eeCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcc-Ccch-hhCC-HHHHHHHHHHHHHHhCCC---CcEEEECCC
Confidence            3578  765554 79999999999999999999999974 3333 2344 466666654 44444332   233445544


Q ss_pred             CCHH-HH---HHHHHcCCCEEecCCCCCC---Cch---HHHHHHhcCCCEEEEcC
Q 038230          297 FYSK-VA---SEAVGKGAHIVNDVSAGQL---DPD---MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~-v~---~aaL~~G~~iINdVsg~~~---d~~---m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+ ++   +.|-++|+|-+--+...-.   +++   .+.-+++.. |+++-+.
T Consensus        80 ~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~  133 (280)
T PLN02417         80 NSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNV  133 (280)
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEC
Confidence            4443 33   3344569997776644211   133   344445556 8887654

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=89.79  E-value=3.8  Score=41.79  Aligned_cols=100  Identities=22%  Similarity=0.312  Sum_probs=71.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCC---CCC---CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGA---QST---RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS  303 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~---eSt---rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~  303 (480)
                      ..+++++.+..+++++.|++.|=+=.   ..+   .++....+ .+++.   .+++..++.    +.++.+=......++
T Consensus       116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~---~~~~~A~~~----g~~v~~H~~~~~~i~  187 (342)
T cd01299         116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELR---AIVDEAHKA----GLYVAAHAYGAEAIR  187 (342)
T ss_pred             ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHH---HHHHHHHHc----CCEEEEEeCCHHHHH
Confidence            45689999999999999999995422   111   11111233 24444   456666765    899999999999999


Q ss_pred             HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                      .++++|++.|-=..  ..+++.++.+++.|+.++..
T Consensus       188 ~~l~~G~~~i~H~~--~~~~~~~~~l~~~g~~~~~t  221 (342)
T cd01299         188 RAIRAGVDTIEHGF--LIDDETIELMKEKGIFLVPT  221 (342)
T ss_pred             HHHHcCCCEEeecC--CCCHHHHHHHHHCCcEEeCc
Confidence            99999998774332  23578899999999988754

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=89.53  E-value=1.3  Score=45.51  Aligned_cols=81  Identities=21%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC--C-CCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--------C
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMA--T-KIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTF--------Y  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a--~-~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--------~  298 (480)
                      .++++..+.|+...+.|+|.||||+.+..+..  . .-+ .....+.+..+++.+++.   .++||++-.+        .
T Consensus        72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~---~~~pv~vKir~g~~~~~~~  148 (319)
T TIGR00737        72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA---VDIPVTVKIRIGWDDAHIN  148 (319)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh---cCCCEEEEEEcccCCCcch
Confidence            46688888888888899999999875422110  1 111 123467788888888876   4788887542        1


Q ss_pred             -HHHHHHHHHcCCCEEe
Q 038230          299 -SKVASEAVGKGAHIVN  314 (480)
Q Consensus       299 -~~v~~aaL~~G~~iIN  314 (480)
                       .+.++.+.+.|++.|.
T Consensus       149 ~~~~a~~l~~~G~d~i~  165 (319)
T TIGR00737       149 AVEAARIAEDAGAQAVT  165 (319)
T ss_pred             HHHHHHHHHHhCCCEEE
Confidence             2334444455777664

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.46  E-value=6.5  Score=38.98  Aligned_cols=148  Identities=16%  Similarity=0.194  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHcCC---CEEEeCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHc
Q 038230          235 AAVSQVRLMISEGA---DMIDIGAQ-STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGK  308 (480)
Q Consensus       235 ~a~~~A~~~v~~GA---diIDIG~e-StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~  308 (480)
                      +.++.|+.+.+.||   +++|+.+. ..++            .-..+|+.|.+.   . .|+.++  -++.+-++..++.
T Consensus        31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~------------~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~   94 (241)
T PRK14114         31 DPAELVEKLIEEGFTLIHVVDLSKAIENSV------------ENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKL   94 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCcccCCc------------chHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHC
Confidence            56778999999999   58899852 2222            123456666665   2 588886  4788999999999


Q ss_pred             CCCE--EecCCCCCCCchHHHHHHhcCCCEEE-EcC-CCCCCcc--ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          309 GAHI--VNDVSAGQLDPDMYKVVAGLKVPYVA-MHM-RGDPSTM--QNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       309 G~~i--INdVsg~~~d~~m~~l~~~~~~~vVl-mh~-~g~p~~~--~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      |++-  ||+.. .+ ++++++-+++|+-.+|+ +.. +|...+-  ++...           -.+.+.++++.+.|+. +
T Consensus        95 Ga~rvvigT~a-~~-~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~-----------~~~~e~~~~~~~~g~~-~  160 (241)
T PRK14114         95 GYRRQIVSSKV-LE-DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEE-----------IDPVSLLKRLKEYGLE-E  160 (241)
T ss_pred             CCCEEEECchh-hC-CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCC-----------CCHHHHHHHHHhcCCC-E
Confidence            9874  66554 22 68877777888755554 333 2321110  01111           2345667788899986 2


Q ss_pred             CEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          383 RIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       383 ~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      =|+-|-   |.+-|-    ++++++++ +..+.|++.+
T Consensus       161 ii~tdI~rdGt~~G~----d~el~~~l~~~~~~pvias  194 (241)
T PRK14114        161 IVHTEIEKDGTLQEH----DFSLTRKIAIEAEVKVFAA  194 (241)
T ss_pred             EEEEeechhhcCCCc----CHHHHHHHHHHCCCCEEEE
Confidence            344444   443343    46667776 3468899863

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=89.37  E-value=24  Score=34.89  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=18.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQS  257 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS  257 (480)
                      ..+.+++++.+.   +.|-+.|++....
T Consensus        15 ~~~~~e~~~~~~---~~G~~~iEl~~~~   39 (284)
T PRK13210         15 HLSWEERLVFAK---ELGFDFVEMSVDE   39 (284)
T ss_pred             CCCHHHHHHHHH---HcCCCeEEEecCC
Confidence            357777776665   6899999998643

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=89.33  E-value=5.2  Score=43.88  Aligned_cols=91  Identities=14%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI  313 (480)
                      +.+++++.++++|+|+|-|...-..      +. .    ....|+.|++..  .+++|.. +-..++.++.+.++|+|.|
T Consensus       241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~-~----~~~~i~~ik~~~--~~~~v~aG~V~t~~~a~~~~~aGad~I  307 (495)
T PTZ00314        241 EDIERAAALIEAGVDVLVVDSSQGN------SI-Y----QIDMIKKLKSNY--PHVDIIAGNVVTADQAKNLIDAGADGL  307 (495)
T ss_pred             HHHHHHHHHHHCCCCEEEEecCCCC------ch-H----HHHHHHHHHhhC--CCceEEECCcCCHHHHHHHHHcCCCEE
Confidence            3489999999999999999752111      11 1    123566677653  3688888 8999999999999999998


Q ss_pred             e-cCCCC----C------CCc------hHHHHHHhcCCCEEE
Q 038230          314 N-DVSAG----Q------LDP------DMYKVVAGLKVPYVA  338 (480)
Q Consensus       314 N-dVsg~----~------~d~------~m~~l~~~~~~~vVl  338 (480)
                      - .+..+    +      ..|      +..++++++++++|.
T Consensus       308 ~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIa  349 (495)
T PTZ00314        308 RIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIA  349 (495)
T ss_pred             EECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEe
Confidence            4 11111    0      012      355677788887664

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=89.32  E-value=1.9  Score=44.00  Aligned_cols=106  Identities=20%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEEeC--
Q 038230          220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSVDT--  296 (480)
Q Consensus       220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISIDT--  296 (480)
                      +|+.+.++|  .+.+++++.++.+.+.|+|+|++.............. ...-..-.+.++.+++.   .++||...-  
T Consensus       216 s~~~~~~~g--~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi  290 (327)
T cd02803         216 SADDFVPGG--LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA---VKIPVIAVGGI  290 (327)
T ss_pred             chhccCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH---CCCCEEEeCCC
Confidence            344344444  5789999999999999999999976432111100000 00001122345555654   366766633  


Q ss_pred             CCHHHHHHHHHc-CCCEEecCCCCCCCchHHHHHH
Q 038230          297 FYSKVASEAVGK-GAHIVNDVSAGQLDPDMYKVVA  330 (480)
Q Consensus       297 ~~~~v~~aaL~~-G~~iINdVsg~~~d~~m~~l~~  330 (480)
                      ..++.++++++. |+|+|---++.-.+|.+..-++
T Consensus       291 ~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~  325 (327)
T cd02803         291 RDPEVAEEILAEGKADLVALGRALLADPDLPNKAR  325 (327)
T ss_pred             CCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence            459999999998 7998875555444666655443

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=89.26  E-value=8.9  Score=38.83  Aligned_cols=115  Identities=20%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID  295 (480)
                      -+||  |-+.|. .|.+...++++.+++ .|++-|=++| ||.-+ ...+. +|..++.. +++.....   ..+...+=
T Consensus        11 ~~TP--f~~dg~-iD~~~~~~li~~l~~~~Gv~gi~v~G-stGE~-~~Ls~-eEr~~~~~~~~~~~~~~---~~viagvg   81 (293)
T PRK04147         11 LLTP--FDEDGQ-IDEQGLRRLVRFNIEKQGIDGLYVGG-STGEA-FLLST-EEKKQVLEIVAEEAKGK---VKLIAQVG   81 (293)
T ss_pred             eECc--CCCCCC-cCHHHHHHHHHHHHhcCCCCEEEECC-Ccccc-ccCCH-HHHHHHHHHHHHHhCCC---CCEEecCC
Confidence            4577  877665 789999999999999 9999999998 33332 24554 55665544 44444432   24455553


Q ss_pred             CCCHH-H---HHHHHHcCCCEEecCCCCCCC---chH----HHHHHhcCCCEEEEcC
Q 038230          296 TFYSK-V---ASEAVGKGAHIVNDVSAGQLD---PDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       296 T~~~~-v---~~aaL~~G~~iINdVsg~~~d---~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+ +   ++.|-+.|++-+--+...-..   +++    -.++...+.|+++-+.
T Consensus        82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~  138 (293)
T PRK04147         82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNI  138 (293)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            33333 3   344455699977766543211   333    3355557889998764

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=89.24  E-value=2.7  Score=43.52  Aligned_cols=76  Identities=24%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCC----HHHHHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFY----SKVASE  304 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~----~~v~~a  304 (480)
                      +.++..+.|+.+.+.|||.|++|...  ..++...-+   -.+++..+++.+++.   .++||.+= +.+    .+.+++
T Consensus       112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~---~~~~~~eil~~v~~~---~~iPV~vKl~p~~~~~~~~a~~  185 (334)
T PRK07565        112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAE---VEQRYLDILRAVKSA---VSIPVAVKLSPYFSNLANMAKR  185 (334)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCcccc---HHHHHHHHHHHHHhc---cCCcEEEEeCCCchhHHHHHHH
Confidence            45677888888889999999998632  222211111   123466778888876   47787764 211    244444


Q ss_pred             HHHcCCCEE
Q 038230          305 AVGKGAHIV  313 (480)
Q Consensus       305 aL~~G~~iI  313 (480)
                      +.++|++-|
T Consensus       186 l~~~G~dgI  194 (334)
T PRK07565        186 LDAAGADGL  194 (334)
T ss_pred             HHHcCCCeE
Confidence            445555544

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=89.14  E-value=7.5  Score=40.53  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM  284 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~  284 (480)
                      ++.|++++.|++..+.|+.-+.+-+ ...|.       .+++++..+++.|++.
T Consensus        79 l~~eeI~~~a~~~~~~G~~~v~l~~-G~~p~-------~~~~~~~e~i~~Ik~~  124 (351)
T TIGR03700        79 MSLEEIVARVKEAYAPGATEVHIVG-GLHPN-------LPFEWYLDMIRTLKEA  124 (351)
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEEec-CCCCC-------CCHHHHHHHHHHHHHH
Confidence            6999999999999999999999873 23332       2366788888888875

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=89.08  E-value=1.8  Score=47.13  Aligned_cols=68  Identities=15%  Similarity=0.283  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~~~v~~aaL~~G~~i  312 (480)
                      ++..++++.++++|+|+|-|=.  +.+.         -+.+...|+.|++.+  .++||..+ -..++.++.+.++|++.
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~D~--a~g~---------~~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~l~~~G~d~  290 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVIDT--AHGH---------QVKMISAIKAVRALD--LGVPIVAGNVVSAEGVRDLLEAGANI  290 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEEeC--CCCC---------cHHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHHHHHhCCCE
Confidence            4567999999999999998854  3322         145667788888753  48999999 99999999999999999


Q ss_pred             Ee
Q 038230          313 VN  314 (480)
Q Consensus       313 IN  314 (480)
                      |.
T Consensus       291 i~  292 (475)
T TIGR01303       291 IK  292 (475)
T ss_pred             EE
Confidence            97

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=89.02  E-value=10  Score=37.81  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=69.1

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      .+||  |-+.|. .|.+...++++.+++.|++-|-++|. |.-+ ...+. +|..++...+ +.....   ..+.+++=+
T Consensus         5 ~~TP--f~~dg~-iD~~~~~~~i~~l~~~Gv~gi~~~Gs-tGE~-~~ls~-~Er~~l~~~~~~~~~~~---~~vi~gv~~   75 (281)
T cd00408           5 LVTP--FTADGE-VDLDALRRLVEFLIEAGVDGLVVLGT-TGEA-PTLTD-EERKEVIEAVVEAVAGR---VPVIAGVGA   75 (281)
T ss_pred             eeCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECCC-Cccc-ccCCH-HHHHHHHHHHHHHhCCC---CeEEEecCC
Confidence            3577  766664 79999999999999999999999984 3333 23444 6666665444 333321   133344433


Q ss_pred             CCHH-HHH---HHHHcCCCEEecCCCCCC---Cch----HHHHHHhcCCCEEEEcC
Q 038230          297 FYSK-VAS---EAVGKGAHIVNDVSAGQL---DPD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~-v~~---aaL~~G~~iINdVsg~~~---d~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+ +++   .|-+.|++-+--+...-.   +++    +..++...+.|+++-+.
T Consensus        76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~  131 (281)
T cd00408          76 NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI  131 (281)
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            3332 333   444569997765543211   223    34455557899998765

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=89.00  E-value=9.5  Score=38.98  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      -+||  |-+.|. .|.+...+.++.++++|.|-|=++| ||.-+ ...|. +|..++...+.....-  ...+...+=+.
T Consensus        12 ~vTP--F~~dg~-vD~~a~~~lv~~li~~Gv~gi~~~G-ttGE~-~~Ls~-eEr~~v~~~~v~~~~g--rvpviaG~g~~   83 (299)
T COG0329          12 LVTP--FDEDGS-VDEEALRRLVEFLIAAGVDGLVVLG-TTGES-PTLTL-EERKEVLEAVVEAVGG--RVPVIAGVGSN   83 (299)
T ss_pred             cccC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECC-CCccc-hhcCH-HHHHHHHHHHHHHHCC--CCcEEEecCCC
Confidence            4688  886455 7999999999999999999999887 44433 34555 5555555544444432  02355556666


Q ss_pred             CHHHH----HHHHHcCCCEEecCCCCCCC---ch----HHHHHHhcCCCEEEEcC
Q 038230          298 YSKVA----SEAVGKGAHIVNDVSAGQLD---PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~v~----~aaL~~G~~iINdVsg~~~d---~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+    +.|-+.|+|=|-.+.-.-..   ++    ...++...+.|+++-..
T Consensus        84 ~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~  138 (299)
T COG0329          84 STAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI  138 (299)
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence            55443    33444599977766652111   22    44556667899887543

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=88.94  E-value=8  Score=39.50  Aligned_cols=80  Identities=20%  Similarity=0.130  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCC---------C----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQ---------S----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---  297 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~e---------S----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---  297 (480)
                      ++..+.|++..++|+|-|+|.+.         |    .|...-.-+.+.-++.+..+++++++... .++||+++-.   
T Consensus       141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g-~d~~i~vris~~~  219 (327)
T cd02803         141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG-PDFPVGVRLSADD  219 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC-CCceEEEEechhc
Confidence            44556788889999999999875         2    22221123445566777888999988632 2678887544   


Q ss_pred             ------CHH----HHHHHHHcCCCEEe
Q 038230          298 ------YSK----VASEAVGKGAHIVN  314 (480)
Q Consensus       298 ------~~~----v~~aaL~~G~~iIN  314 (480)
                            .++    .++...+.|+++|.
T Consensus       220 ~~~~g~~~~e~~~la~~l~~~G~d~i~  246 (327)
T cd02803         220 FVPGGLTLEEAIEIAKALEEAGVDALH  246 (327)
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence                  233    34445556999996

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=88.79  E-value=4.6  Score=39.12  Aligned_cols=151  Identities=18%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G  309 (480)
                      +.++.|+.+.+.||   .++|+.+--+  +. ...        ..+++.+.+.   +++|+.++-  .+.+.++.+++.|
T Consensus        29 dp~~~a~~~~~~g~~~l~v~dl~~~~~--g~-~~~--------~~~i~~i~~~---~~~pi~~ggGI~~~ed~~~~~~~G   94 (230)
T TIGR00007        29 DPVEAAKKWEEEGAERIHVVDLDGAKE--GG-PVN--------LPVIKKIVRE---TGVPVQVGGGIRSLEDVEKLLDLG   94 (230)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCcccc--CC-CCc--------HHHHHHHHHh---cCCCEEEeCCcCCHHHHHHHHHcC
Confidence            35667888888888   4667765211  11 011        1234555554   367888854  6789999999999


Q ss_pred             CCEEecCCCCCCC-chHHHHHHhcC-CCEEEE-cCC-CCCC--ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230          310 AHIVNDVSAGQLD-PDMYKVVAGLK-VPYVAM-HMR-GDPS--TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR  383 (480)
Q Consensus       310 ~~iINdVsg~~~d-~~m~~l~~~~~-~~vVlm-h~~-g~p~--~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~  383 (480)
                      ++.+---+....+ +.+.+++++++ -.+++. ..+ |...  .-++...           ....+.++.+.+.|+.  .
T Consensus        95 a~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~-----------~~~~~~~~~~~~~g~~--~  161 (230)
T TIGR00007        95 VDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSE-----------VSLEELAKRLEELGLE--G  161 (230)
T ss_pred             CCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCC-----------CCHHHHHHHHHhCCCC--E
Confidence            9855322221123 45788888887 334432 211 1100  0000000           1123566677889986  5


Q ss_pred             EE-Eec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          384 II-IDP---GLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       384 Ii-lDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      |+ .|=   |..++    .++++++++ +..+.|++.|
T Consensus       162 ii~~~~~~~g~~~g----~~~~~i~~i~~~~~ipvia~  195 (230)
T TIGR00007       162 IIYTDISRDGTLSG----PNFELTKELVKAVNVPVIAS  195 (230)
T ss_pred             EEEEeecCCCCcCC----CCHHHHHHHHHhCCCCEEEe
Confidence            55 333   22223    357777777 3478898875

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=88.61  E-value=26  Score=34.80  Aligned_cols=23  Identities=13%  Similarity=0.260  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQ  256 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~e  256 (480)
                      .+.+++++   ...+.|-+-|+++..
T Consensus        16 ~~~~e~l~---~~~~~G~~~VEl~~~   38 (279)
T TIGR00542        16 ECWLERLQ---LAKTCGFDFVEMSVD   38 (279)
T ss_pred             CCHHHHHH---HHHHcCCCEEEEecC
Confidence            34555554   445789999999753

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.52  E-value=22  Score=33.69  Aligned_cols=99  Identities=16%  Similarity=0.286  Sum_probs=65.2

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..++.|+...           +.+++++.++.+++.|+++|-+=.-+  +.         ...+...++.+++....-..
T Consensus        12 ~~~~~v~r~~-----------~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~---------~~e~~~~~~~~~~~~~~g~g   69 (187)
T PRK07455         12 HRAIAVIRAP-----------DLELGLQMAEAVAAGGMRLIEITWNS--DQ---------PAELISQLREKLPECIIGTG   69 (187)
T ss_pred             CCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--CC---------HHHHHHHHHHhCCCcEEeEE
Confidence            5678887766           57899999999999999999996421  11         12222333444432100011


Q ss_pred             eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      ++    ...+-++.|+++|++.+  +++. .+++..++++.++.++++
T Consensus        70 tv----l~~d~~~~A~~~gAdgv--~~p~-~~~~~~~~~~~~~~~~i~  110 (187)
T PRK07455         70 TI----LTLEDLEEAIAAGAQFC--FTPH-VDPELIEAAVAQDIPIIP  110 (187)
T ss_pred             EE----EcHHHHHHHHHcCCCEE--ECCC-CCHHHHHHHHHcCCCEEc
Confidence            11    23378889999999998  4444 368899999999987653

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=88.49  E-value=10  Score=38.29  Aligned_cols=115  Identities=19%  Similarity=0.269  Sum_probs=70.0

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISE-GADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~-GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID  295 (480)
                      .+||  |-+.|. .|.+...+.++.+++. |++-|=++| ||.-+ ...+ .+|..++.. +++.....   ..+.+.+-
T Consensus         8 ~~TP--f~~dg~-iD~~~~~~~i~~l~~~~Gv~gi~~~G-stGE~-~~Lt-~~Er~~~~~~~~~~~~~~---~~viagv~   78 (288)
T cd00954           8 LLTP--FDENGE-INEDVLRAIVDYLIEKQGVDGLYVNG-STGEG-FLLS-VEERKQIAEIVAEAAKGK---VTLIAHVG   78 (288)
T ss_pred             eECC--CCCCCC-CCHHHHHHHHHHHHhcCCCCEEEECc-CCcCc-ccCC-HHHHHHHHHHHHHHhCCC---CeEEeccC
Confidence            3577  776665 7999999999999999 999999998 44433 3445 466666654 44444322   13334453


Q ss_pred             CCC-HHHHH---HHHHcCCCEEecCCCCCC---CchH----HHHHHhc-CCCEEEEcC
Q 038230          296 TFY-SKVAS---EAVGKGAHIVNDVSAGQL---DPDM----YKVVAGL-KVPYVAMHM  341 (480)
Q Consensus       296 T~~-~~v~~---aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~-~~~vVlmh~  341 (480)
                      +.+ .++++   .|.+.|++-+--+...-.   ++++    -.++... +.|+++-+.
T Consensus        79 ~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~  136 (288)
T cd00954          79 SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI  136 (288)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            333 33443   445569998765443211   2333    3344556 789998654

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=88.38  E-value=6.6  Score=40.57  Aligned_cols=80  Identities=25%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---  297 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---  297 (480)
                      ++..+.|++..++|.|.|+|++.-             .|...-.-+.+.-++.+..+++++++... .+.||+|+-.   
T Consensus       154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v~vri~~~~  232 (336)
T cd02932         154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPLFVRISATD  232 (336)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEEcccc
Confidence            344567888899999999998631             22111133566778888899999998742 2789999733   


Q ss_pred             ------CHHHHHH----HHHcCCCEEe
Q 038230          298 ------YSKVASE----AVGKGAHIVN  314 (480)
Q Consensus       298 ------~~~v~~a----aL~~G~~iIN  314 (480)
                            .++.+.+    .-+.|+++|.
T Consensus       233 ~~~~g~~~~e~~~ia~~Le~~gvd~ie  259 (336)
T cd02932         233 WVEGGWDLEDSVELAKALKELGVDLID  259 (336)
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence                  3433322    2335999998

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=88.34  E-value=4  Score=42.14  Aligned_cols=58  Identities=24%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      +.++..+.|+.+.+.|||.|++|..+  .+|+....+.   -+++..+++.+++.   .++||.+=
T Consensus       110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~---~~~~~eiv~~v~~~---~~iPv~vK  169 (325)
T cd04739         110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEV---EQRYLDILRAVKSA---VTIPVAVK  169 (325)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH---HHHHHHHHHHHHhc---cCCCEEEE
Confidence            45677788888888899999999843  2333221111   24677788888876   36777664

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=88.33  E-value=7  Score=40.34  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM  284 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~  284 (480)
                      ..+++++++.++++.+.|+.-|-+.+. ..|.       .+.+++..+++.|++.
T Consensus        71 ~ls~eei~~~~~~~~~~G~~~i~l~gG-~~p~-------~~~~~~~~li~~Ik~~  117 (340)
T TIGR03699        71 VLSVEEILQKIEELVAYGGTQILLQGG-VNPD-------LGLDYYEDLFRAIKAR  117 (340)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEecC-CCCC-------CCHHHHHHHHHHHHHH
Confidence            479999999999999999999988532 2332       2356677778888764

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=88.33  E-value=4.4  Score=39.91  Aligned_cols=147  Identities=16%  Similarity=0.167  Sum_probs=86.7

Q ss_pred             HHHHHHHHHH-cCC---CEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHc
Q 038230          236 AVSQVRLMIS-EGA---DMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGK  308 (480)
Q Consensus       236 a~~~A~~~v~-~GA---diIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~  308 (480)
                      .++.|+.+.+ .||   +|+|+.+-. .++            .-..+|+.|.+.   +++||.++  -++.+.++..+++
T Consensus        33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~------------~n~~~I~~i~~~---~~~pi~vGGGIrs~e~v~~~l~~   97 (234)
T PRK13587         33 AEESIAYYSQFECVNRIHIVDLIGAKAQHA------------REFDYIKSLRRL---TTKDIEVGGGIRTKSQIMDYFAA   97 (234)
T ss_pred             HHHHHHHHHhccCCCEEEEEECcccccCCc------------chHHHHHHHHhh---cCCeEEEcCCcCCHHHHHHHHHC
Confidence            3447888888 686   678997632 111            123456666665   47899996  5899999999999


Q ss_pred             CCCE--EecCCCCCCCch-HHHHHHhcCCCEEEE-cC-CCCCCc--cccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          309 GAHI--VNDVSAGQLDPD-MYKVVAGLKVPYVAM-HM-RGDPST--MQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       309 G~~i--INdVsg~~~d~~-m~~l~~~~~~~vVlm-h~-~g~p~~--~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      |++-  ||+.. .+ +++ +-+++++|+-.+|+. .. .|...+  -.+..           ...+.+.++.+.+.|+. 
T Consensus        98 Ga~kvvigt~a-~~-~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~-----------~~~~~~~~~~~~~~g~~-  163 (234)
T PRK13587         98 GINYCIVGTKG-IQ-DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDT-----------ELNLFSFVRQLSDIPLG-  163 (234)
T ss_pred             CCCEEEECchH-hc-CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccC-----------CCCHHHHHHHHHHcCCC-
Confidence            9874  44443 22 555 555777786555543 32 231111  00101           01235666777788886 


Q ss_pred             CCEE-Eec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          382 WRII-IDP---GLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       382 ~~Ii-lDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                       .|| -|-   |.+-|.    |+++++++ +..+.|+.++
T Consensus       164 -~ii~tdi~~dGt~~G~----~~~li~~l~~~~~ipvi~~  198 (234)
T PRK13587        164 -GIIYTDIAKDGKMSGP----NFELTGQLVKATTIPVIAS  198 (234)
T ss_pred             -EEEEecccCcCCCCcc----CHHHHHHHHHhCCCCEEEe
Confidence             444 444   333333    46667766 3468999875

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=88.20  E-value=20  Score=36.51  Aligned_cols=143  Identities=17%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC---HHHHHHHHH-
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY---SKVASEAVG-  307 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~---~~v~~aaL~-  307 (480)
                      ++++.++.++++.+.|-+.+.|....        +.++++++    |+++++...  +++|++|...   .+.+.+.++ 
T Consensus       134 ~~~~~~~~~~~~~~~Gf~~iKik~g~--------~~~~d~~~----v~~lr~~~g--~~~l~vD~n~~~~~~~A~~~~~~  199 (316)
T cd03319         134 TPEAMAAAAKKAAKRGFPLLKIKLGG--------DLEDDIER----IRAIREAAP--DARLRVDANQGWTPEEAVELLRE  199 (316)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeCC--------ChhhHHHH----HHHHHHhCC--CCeEEEeCCCCcCHHHHHHHHHH
Confidence            67889999999999999999987521        12344444    566666542  5789999854   444333322 


Q ss_pred             ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230          308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI  384 (480)
Q Consensus       308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I  384 (480)
                         .|..+|-+-......+.+.++.+..++|++.--+-   .+                   ..+..+.+...+++  =+
T Consensus       200 l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~---~~-------------------~~~~~~~~~~~~~d--~v  255 (316)
T cd03319         200 LAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESC---FS-------------------AADAARLAGGGAYD--GI  255 (316)
T ss_pred             HHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCC---CC-------------------HHHHHHHHhcCCCC--EE
Confidence               38888876543221256777777788887762221   00                   01111222345554  68


Q ss_pred             EEecCC--CCccChhHHHHHHHhcccCCCcEEEe
Q 038230          385 IIDPGL--GFSKKAEHNLDILLGLAASHAPILIG  416 (480)
Q Consensus       385 ilDPgi--Gf~k~~~~~~~~lr~l~~~g~Pil~G  416 (480)
                      .+||..  |+.+    ..++.+..+..|+++.+|
T Consensus       256 ~~~~~~~GGi~~----~~~~~~~a~~~gi~~~~~  285 (316)
T cd03319         256 NIKLMKTGGLTE----ALRIADLARAAGLKVMVG  285 (316)
T ss_pred             EEeccccCCHHH----HHHHHHHHHHcCCCEEEE
Confidence            899854  2322    233444335579999887

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK12928 lipoyl synthase; Provisional

Probab=88.18  E-value=7.8  Score=39.50  Aligned_cols=141  Identities=13%  Similarity=0.145  Sum_probs=82.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----CHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----YSKVASE  304 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----~~~v~~a  304 (480)
                      ..+++++++.|++..+.|+..|-|-+.. ++.   . .+...+++..+++.|++..  .++.|.+=|.     ..++++.
T Consensus        86 ~~~~eei~~~a~~~~~~G~keivitg~~-~dD---l-~d~g~~~~~ell~~Ik~~~--p~~~I~~ltp~~~~~~~e~L~~  158 (290)
T PRK12928         86 PLDPDEPERVAEAVAALGLRYVVLTSVA-RDD---L-PDGGAAHFVATIAAIRARN--PGTGIEVLTPDFWGGQRERLAT  158 (290)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEe-CCc---c-cccCHHHHHHHHHHHHhcC--CCCEEEEeccccccCCHHHHHH
Confidence            3689999999999999999988885432 211   0 0122456777788887753  2344444333     2355666


Q ss_pred             HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC--CCCC
Q 038230          305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG--IPAW  382 (480)
Q Consensus       305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G--i~~~  382 (480)
                      ..++|++++|=- -+. .+++++.+..                     ...|        +...+.++.+.+.|  +.  
T Consensus       159 l~~Ag~~i~~hn-lEt-~~~vl~~m~r---------------------~~t~--------e~~le~l~~ak~~gp~i~--  205 (290)
T PRK12928        159 VLAAKPDVFNHN-LET-VPRLQKAVRR---------------------GADY--------QRSLDLLARAKELAPDIP--  205 (290)
T ss_pred             HHHcCchhhccc-CcC-cHHHHHHhCC---------------------CCCH--------HHHHHHHHHHHHhCCCce--
Confidence            666676666521 111 1333332211                     0112        23356777888888  64  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhcccCCC
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGLAASHA  411 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l~~~g~  411 (480)
                       +--|=.+||+.+.++-.++++.++..++
T Consensus       206 -~~s~iIvG~GET~ed~~etl~~Lrel~~  233 (290)
T PRK12928        206 -TKSGLMLGLGETEDEVIETLRDLRAVGC  233 (290)
T ss_pred             -ecccEEEeCCCCHHHHHHHHHHHHhcCC
Confidence             4445556888888887777777644443

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=88.16  E-value=2.4  Score=45.30  Aligned_cols=67  Identities=15%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI  313 (480)
                      +..++++.++++|||+|-|=  +|.+..         ..+...++.+++..  .+++|.. |-..++.++.++++|+|.|
T Consensus       153 ~~~~~v~~lv~aGvDvI~iD--~a~g~~---------~~~~~~v~~ik~~~--p~~~vi~g~V~T~e~a~~l~~aGaD~I  219 (404)
T PRK06843        153 DTIERVEELVKAHVDILVID--SAHGHS---------TRIIELVKKIKTKY--PNLDLIAGNIVTKEAALDLISVGADCL  219 (404)
T ss_pred             HHHHHHHHHHhcCCCEEEEE--CCCCCC---------hhHHHHHHHHHhhC--CCCcEEEEecCCHHHHHHHHHcCCCEE
Confidence            46789999999999999883  444432         13445567777653  3676756 9999999999999999998


Q ss_pred             e
Q 038230          314 N  314 (480)
Q Consensus       314 N  314 (480)
                      -
T Consensus       220 ~  220 (404)
T PRK06843        220 K  220 (404)
T ss_pred             E
Confidence            6

>PRK04326 methionine synthase; Provisional

Probab=87.83  E-value=19  Score=36.94  Aligned_cols=148  Identities=11%  Similarity=0.185  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--C-HHHHHHHHHcCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--Y-SKVASEAVGKGA  310 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~-~~v~~aaL~~G~  310 (480)
                      +...+.++.+.+.||++|=|-=    |.... ++ ++++...++++.+.+..   +..+.+-+.  + ....+.-++.|+
T Consensus       161 ~~~~~~i~~l~~~G~~~iqidE----P~l~~-~~-~~~~~~~~~l~~~~~~~---~~~v~lH~C~G~~~~~~~~l~~~~v  231 (330)
T PRK04326        161 KVINEEIKNLVEAGAKYIQIDE----PALAT-HP-EDVEIAVEALNRIVKGI---NAKLGLHVCYGDYSRIAPYILEFPV  231 (330)
T ss_pred             HHHHHHHHHHHHCCCCEEEecC----chhhc-CH-HHHHHHHHHHHHHHhCC---CCEEEEEEeCCCcHHHHHHHHhCCC
Confidence            3455667888899999988863    32211 22 56788888888887653   445554443  3 334555566788


Q ss_pred             CEEecCCCCCCCchHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      +.+. +.......+-+..++++  +-.+++ -.- .++++..      ++ .    +.+.++++.+.+ +++.+++++-|
T Consensus       232 d~i~-~d~~~~~~~~l~~~~~~~~~~~l~~-Gvv-~~~~~~~------~~-~----e~v~~~v~~~~~-~~~~~~~~lsp  296 (330)
T PRK04326        232 DQFD-LEFANGNYKLLDLLKEYGFDKELGL-GVI-DVHSARV------ES-V----EEIKEAIKKGLE-YVPPEKLYINP  296 (330)
T ss_pred             CEEE-EEeCCCCchhHHHhhccCCCCeEEe-EEE-eCCCCCC------CC-H----HHHHHHHHHHHH-hCChhhEEECC
Confidence            8775 32211122355666666  433332 110 1122111      11 1    334566667766 67778999999


Q ss_pred             CCCCccC----hhHHHHHHHh
Q 038230          389 GLGFSKK----AEHNLDILLG  405 (480)
Q Consensus       389 giGf~k~----~~~~~~~lr~  405 (480)
                      +-||+..    ..++++.+.+
T Consensus       297 ~Cgl~~~~~~~a~~kl~~l~~  317 (330)
T PRK04326        297 DCGLKLLPREIAYQKLVNMVK  317 (330)
T ss_pred             CCCCCcCCHHHHHHHHHHHHH
Confidence            9888643    2344554444

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=87.79  E-value=2.7  Score=43.76  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC
Q 038230          220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF  297 (480)
Q Consensus       220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~  297 (480)
                      +++-+-.||  .+.++.++.++.+.+.|+|+|+|-+.+..+......+.  .  ..+..+.+++.   .++||..  +=.
T Consensus       215 s~~d~~~~G--~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~--~--~~~~~~~ik~~---~~ipVi~~G~i~  285 (337)
T PRK13523        215 SASDYHPGG--LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG--Y--QVPFAEHIREH---ANIATGAVGLIT  285 (337)
T ss_pred             cccccCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc--c--cHHHHHHHHhh---cCCcEEEeCCCC
Confidence            344444555  46899999999999999999999765422211111110  0  22345566655   3667543  335


Q ss_pred             CHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          298 YSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       298 ~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      .++.++++|+.| +|+|-=-.+.-.||++..-+++
T Consensus       286 ~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~  320 (337)
T PRK13523        286 SGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK  320 (337)
T ss_pred             CHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence            799999999986 8888644444456776655554

>TIGR00510 lipA lipoate synthase

Probab=87.75  E-value=16  Score=37.58  Aligned_cols=143  Identities=12%  Similarity=0.045  Sum_probs=82.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~aa  305 (480)
                      ..+++++++.|+...+.|+.-|-|=+.- ++...    +.....+..+|+.|++..  .++.|.+-+.+    .+.++.-
T Consensus        90 ~~~~eei~~~a~~~~~~GlkevvLTsv~-~ddl~----d~g~~~l~~li~~I~~~~--p~i~Ievl~~d~~g~~e~l~~l  162 (302)
T TIGR00510        90 PPDPEEPAKLAETIKDMGLKYVVITSVD-RDDLE----DGGASHLAECIEAIREKL--PNIKIETLVPDFRGNIAALDIL  162 (302)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEeec-CCCcc----cccHHHHHHHHHHHHhcC--CCCEEEEeCCcccCCHHHHHHH
Confidence            3578999999999999999988776432 22111    123456788888888753  25556665543    3344444


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCCC
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAWR  383 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~~  383 (480)
                      .++|.+++|-- -+. -+.+++-+            +         ....|        +...+.++.+.+.  |+.   
T Consensus       163 ~~aG~dv~~hn-lEt-~~~l~~~v------------r---------r~~t~--------e~~Le~l~~ak~~~pgi~---  208 (302)
T TIGR00510       163 LDAPPDVYNHN-LET-VERLTPFV------------R---------PGATY--------RWSLKLLERAKEYLPNLP---  208 (302)
T ss_pred             HHcCchhhccc-ccc-hHHHHHHh------------C---------CCCCH--------HHHHHHHHHHHHhCCCCe---
Confidence            55566655521 111 12222221            0         01122        2334666677766  553   


Q ss_pred             EEEecCCCCccChhHHHHHHHhcccCCCcE
Q 038230          384 IIIDPGLGFSKKAEHNLDILLGLAASHAPI  413 (480)
Q Consensus       384 IilDPgiGf~k~~~~~~~~lr~l~~~g~Pi  413 (480)
                      +--|=.+|||.+.++-.++++.++..++-.
T Consensus       209 ~~TgiIVGlGETeee~~etl~~Lrelg~d~  238 (302)
T TIGR00510       209 TKSGIMVGLGETNEEIKQTLKDLRDHGVTM  238 (302)
T ss_pred             ecceEEEECCCCHHHHHHHHHHHHhcCCCE
Confidence            444555688999887777777765455443

The family shows strong sequence conservation.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=87.69  E-value=3.2  Score=43.00  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=66.8

Q ss_pred             EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC---C-CH-HHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK---I-SA-EKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~---v-~~-~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      +|.  +-|.++|  .+.+++++.++.+.+.|+|+|.|-+..-.+....   . +. ..+ ....+..+.|++.   .++|
T Consensus       223 is~--~~~~~~g--~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ik~~---v~iP  294 (338)
T cd04733         223 LNS--ADFQRGG--FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE-AYFLEFAEKIRKV---TKTP  294 (338)
T ss_pred             EcH--HHcCCCC--CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc-hhhHHHHHHHHHH---cCCC
Confidence            553  3355665  4789999999999999999999875432111100   0 00 001 1112344556665   3788


Q ss_pred             EEEeCC--CHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHH
Q 038230          292 VSVDTF--YSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVA  330 (480)
Q Consensus       292 ISIDT~--~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~  330 (480)
                      |..+..  .++.++++++.| +|+|.--.+.-.||.+..-++
T Consensus       295 Vi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~  336 (338)
T cd04733         295 LMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL  336 (338)
T ss_pred             EEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence            877654  589999999986 899986666555677665544

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR00433 bioB biotin synthetase

Probab=87.65  E-value=32  Score=34.39  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=41.8

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCCCHHHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMI---DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTFYSKVAS  303 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiI---DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~~~~v~~  303 (480)
                      ++.+++++++.++++.+.|+.-+   +.|.+   |.     ...-.+.+..+.+.+++.    ++.  +++...+++.++
T Consensus        60 ~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~---~~-----~~~~~~~~~~i~~~~~~~----~i~~~~~~g~~~~e~l~  127 (296)
T TIGR00433        60 RLKKVDEVLEEARKAKAAGATRFCLVASGRG---PK-----DREFMEYVEAMVQIVEEM----GLKTCATLGLLDPEQAK  127 (296)
T ss_pred             cCCCHHHHHHHHHHHHHCCCCEEEEEEecCC---CC-----hHHHHHHHHHHHHHHHhC----CCeEEecCCCCCHHHHH
Confidence            55789999999999999998654   33332   21     112133444444444432    443  333445666666


Q ss_pred             HHHHcCCCEE
Q 038230          304 EAVGKGAHIV  313 (480)
Q Consensus       304 aaL~~G~~iI  313 (480)
                      ..-++|++.+
T Consensus       128 ~Lk~aG~~~v  137 (296)
T TIGR00433       128 RLKDAGLDYY  137 (296)
T ss_pred             HHHHcCCCEE
Confidence            6666666654

Catalyzes the last step of the biotin biosynthesis pathway.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=87.65  E-value=1.6  Score=45.08  Aligned_cols=92  Identities=20%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS  303 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~  303 (480)
                      .+++...+.|+...+.|+|+||||+.=--|       |+..   -.+.+++..+|+++++..+  ++|||+=++      
T Consensus        76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~L---l~~p~lv~~iv~a~~~av~--~iPVTVKiR------  144 (323)
T COG0042          76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAAL---LKNPELLAEIVKAMVEAVG--DIPVTVKIR------  144 (323)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhh---cCCHHHHHHHHHHHHHhhC--CCCeEEEEe------
Confidence            467888888999999999999999631111       2221   2467788888999998731  489988543      


Q ss_pred             HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230          304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~  342 (480)
                          .|.+--.     ....+++..+.+.|+..+.+|-+
T Consensus       145 ----lG~d~~~-----~~~~~ia~~~~~~g~~~ltVHgR  174 (323)
T COG0042         145 ----LGWDDDD-----ILALEIARILEDAGADALTVHGR  174 (323)
T ss_pred             ----cccCccc-----ccHHHHHHHHHhcCCCEEEEecc
Confidence                1221111     01245677777777777777754

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=87.65  E-value=4.5  Score=44.15  Aligned_cols=91  Identities=18%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i  312 (480)
                      ++..++++.++++|+++|-|=. +.++          -..+...|+.|++.+  .+++|.- |.-.++.+++++++|+|.
T Consensus       226 ~~~~~~a~~Lv~aGvd~i~~D~-a~~~----------~~~~~~~i~~ik~~~--p~~~v~agnv~t~~~a~~l~~aGad~  292 (479)
T PRK07807        226 GDVAAKARALLEAGVDVLVVDT-AHGH----------QEKMLEALRAVRALD--PGVPIVAGNVVTAEGTRDLVEAGADI  292 (479)
T ss_pred             hhHHHHHHHHHHhCCCEEEEec-cCCc----------cHHHHHHHHHHHHHC--CCCeEEeeccCCHHHHHHHHHcCCCE
Confidence            4567899999999999987753 2222          235666788888764  4788888 999999999999999999


Q ss_pred             Ee----c--------CCCCCCCc------hHHHHHHhcCCCEEE
Q 038230          313 VN----D--------VSAGQLDP------DMYKVVAGLKVPYVA  338 (480)
Q Consensus       313 IN----d--------Vsg~~~d~------~m~~l~~~~~~~vVl  338 (480)
                      |-    .        ++|.. .|      +..+.+++++++||.
T Consensus       293 v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~via  335 (479)
T PRK07807        293 VKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAHVWA  335 (479)
T ss_pred             EEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCcEEe
Confidence            97    3        11111 12      345555578888885

>TIGR01464 hemE uroporphyrinogen decarboxylase

Probab=87.58  E-value=21  Score=36.73  Aligned_cols=149  Identities=16%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC--CCCe-E--EEeCCCHHHHHHHHHc
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM--EGKL-V--SVDTFYSKVASEAVGK  308 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~--~~~p-I--SIDT~~~~v~~aaL~~  308 (480)
                      +..++.++.|++.|||+|=|. ++   -+..+|+++=.+-+.|.++.+.+..+.  .+.+ +  |=||.  ...+.-.+.
T Consensus       180 ~~~~~~~~~~~eaGad~i~i~-d~---~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~~~--~~~~~~~~~  253 (338)
T TIGR01464       180 DATIEYLVEQVKAGAQAVQIF-DS---WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKGAG--HLLEELAET  253 (338)
T ss_pred             HHHHHHHHHHHHcCCCEEEEE-CC---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCcH--HHHHHHHhc
Confidence            345677888999999998775 33   235688765444444544444432110  1333 3  23543  455555556


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |+++++ +..   ...+.+..+.++-.+++|-+- .|..+..    .    -+++.+...+.++.+.    ....-|+=|
T Consensus       254 ~~~~~s-~d~---~~dl~e~~~~~~~~~~i~Gni-~p~~l~g----t----~e~i~~~v~~~l~~~~----~~~g~Il~~  316 (338)
T TIGR01464       254 GADVVG-LDW---TVDLKEARKRVGPGVAIQGNL-DPAVLYA----P----EEALEEKVEKILEAFG----GKSRYIFNL  316 (338)
T ss_pred             CCCEEE-eCC---CCCHHHHHHHhCCCeeEEeCC-ChHHhcC----C----HHHHHHHHHHHHHHhc----cCCCceecC
Confidence            998884 332   235666667777677776543 2332211    1    1334444444444432    223569999


Q ss_pred             CCCCc-cChhHHHHHHHh
Q 038230          389 GLGFS-KKAEHNLDILLG  405 (480)
Q Consensus       389 giGf~-k~~~~~~~~lr~  405 (480)
                      |-|.. .+..+|++.+-+
T Consensus       317 Gc~i~~~tp~eni~a~v~  334 (338)
T TIGR01464       317 GHGILPDTPPENVKALVE  334 (338)
T ss_pred             CCcCCCCcCHHHHHHHHH
Confidence            99874 677788776543

This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=87.58  E-value=12  Score=36.81  Aligned_cols=153  Identities=18%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G  309 (480)
                      +.++.|+.+.+.||   +++|+.+...++            .-..+|+.+.+.   .++|+.++  -.+.+-++..+..|
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~------------~n~~~i~~i~~~---~~~pv~vgGGirs~edv~~~l~~G   97 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG------------SNRELLAEVVGK---LDVKVELSGGIRDDESLEAALATG   97 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccCCCC------------ccHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHCC
Confidence            45678899999999   477886531111            122567777765   47899997  47889999999999


Q ss_pred             CCEEecCCCCCCCch-HHHHHHhcCCCEEE-EcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230          310 AHIVNDVSAGQLDPD-MYKVVAGLKVPYVA-MHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII  386 (480)
Q Consensus       310 ~~iINdVsg~~~d~~-m~~l~~~~~~~vVl-mh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil  386 (480)
                      ++-+.-=+..-.+++ +.+++++++-.+++ +..+ +...+.      .|.+    -...+.+.++.+.+.|+.  .|++
T Consensus        98 a~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~------Gw~~----~~~~~~~~~~~l~~~G~~--~iiv  165 (241)
T PRK14024         98 CARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR------GWTR----DGGDLWEVLERLDSAGCS--RYVV  165 (241)
T ss_pred             CCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC------Ceee----cCccHHHHHHHHHhcCCC--EEEE
Confidence            986542222223554 55667777655544 2221 222110      0111    002344666777899997  5665


Q ss_pred             ecC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          387 DPG--LGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       387 DPg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      =.-  -|..+.  .++++++++ +..+.|++.+
T Consensus       166 ~~~~~~g~~~G--~d~~~i~~i~~~~~ipvias  196 (241)
T PRK14024        166 TDVTKDGTLTG--PNLELLREVCARTDAPVVAS  196 (241)
T ss_pred             EeecCCCCccC--CCHHHHHHHHhhCCCCEEEe
Confidence            441  122222  257778877 3468999864

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=87.56  E-value=12  Score=36.90  Aligned_cols=176  Identities=18%  Similarity=0.248  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EE
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IV  313 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iI  313 (480)
                      ..+.+++..+.|+|.|=||| |+     .++.    +.+.++++.+++.    .+|+-+-=.+++.+..    ++|  ++
T Consensus        16 ~~~~~~~~~~~gtdai~vGG-S~-----~vt~----~~~~~~v~~ik~~----~lPvilfp~~~~~i~~----~aDa~l~   77 (223)
T TIGR01768        16 ADEIAKAAAESGTDAILIGG-SQ-----GVTY----EKTDTLIEALRRY----GLPIILFPSNPTNVSR----DADALFF   77 (223)
T ss_pred             cHHHHHHHHhcCCCEEEEcC-CC-----cccH----HHHHHHHHHHhcc----CCCEEEeCCCccccCc----CCCEEEE
Confidence            45688899999999999997 32     2332    2556677788865    5899886666665543    344  44


Q ss_pred             ecCCCCCCCc--------hHHHHHHhcCC-----CEEEEcCCCCCCcccc-ccc-cchhhHHHHHHHHHHHHHHHHH-HC
Q 038230          314 NDVSAGQLDP--------DMYKVVAGLKV-----PYVAMHMRGDPSTMQN-EEN-LQYDDVCKQVASELYSKVRDAE-LS  377 (480)
Q Consensus       314 NdVsg~~~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~~~~-~~~-~~~~~v~~ev~~~l~~~i~~a~-~~  377 (480)
                      .++-... ++        +-++..++++-     +|+++...+.-....+ .+. ...+++        ..-...|. =.
T Consensus        78 ~svlNs~-~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~--------aa~~~lA~~~~  148 (223)
T TIGR01768        78 PSVLNSD-DPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDL--------AAYAAMAEEML  148 (223)
T ss_pred             EEeecCC-CchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHH--------HHHHHHHHHHc
Confidence            4433222 33        23455555553     5666654332111100 000 111221        12223333 36


Q ss_pred             CCCCCCEEEecCCCCccChhHHHHHHHhc-ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230          378 GIPAWRIIIDPGLGFSKKAEHNLDILLGL-AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR  455 (480)
Q Consensus       378 Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR  455 (480)
                      |.+  =++++=|-|+++..  |.++++++ +.. +.|+.+|-          |-     |....+   ..+...||+.+-
T Consensus       149 g~~--~vYlE~gs~~g~~v--~~e~i~~v~~~~~~~pl~vGG----------GI-----rs~e~a---~~l~~aGAD~VV  206 (223)
T TIGR01768       149 GMP--IIYLEAGSGAPEPV--PPELVAEVKKVLDKARLFVGG----------GI-----RSVEKA---REMAEAGADTIV  206 (223)
T ss_pred             CCc--EEEEEecCCCCCCc--CHHHHHHHHHHcCCCCEEEec----------CC-----CCHHHH---HHHHHcCCCEEE
Confidence            776  79999988887653  23445554 234 89999983          22     222232   234566999988


Q ss_pred             cCChH
Q 038230          456 VHNIR  460 (480)
Q Consensus       456 vHdV~  460 (480)
                      +=++.
T Consensus       207 VGs~~  211 (223)
T TIGR01768       207 TGNVI  211 (223)
T ss_pred             ECcHH
Confidence            87754

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK08444 hypothetical protein; Provisional

Probab=87.53  E-value=7.4  Score=40.79  Aligned_cols=65  Identities=12%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCCCHHHHHHHH
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAV  306 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~~~~v~~aaL  306 (480)
                      ..++.|+++++|++..+.|++-+-|-+ +.+|..       +++.+..+++.|++.     .| +.|..+.+..+...-
T Consensus        78 y~ls~eeI~~~a~~a~~~G~~ei~iv~-G~~p~~-------~~e~y~e~ir~Ik~~-----~p~i~i~a~s~~Ei~~~a  143 (353)
T PRK08444         78 YTMSHEEILEIVKNSVKRGIKEVHIVS-AHNPNY-------GYEWYLEIFKKIKEA-----YPNLHVKAMTAAEVDFLS  143 (353)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEec-cCCCCC-------CHHHHHHHHHHHHHH-----CCCceEeeCCHHHHHHHH
Confidence            347999999999999999999888864 244432       466778888888864     33 777777776665444

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=87.17  E-value=11  Score=36.95  Aligned_cols=148  Identities=18%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G  309 (480)
                      +.++.|+.+.+.||   +++|+.+..   +.+         .-..+|+.+.+.   .++|+.++  -.+.+-+++.++.|
T Consensus        36 dp~~~a~~~~~~g~~~l~i~DLd~~~---~~~---------~n~~~i~~i~~~---~~~~v~vgGGir~~edv~~~l~~G  100 (233)
T cd04723          36 DPLDVARAYKELGFRGLYIADLDAIM---GRG---------DNDEAIRELAAA---WPLGLWVDGGIRSLENAQEWLKRG  100 (233)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeCcccc---CCC---------ccHHHHHHHHHh---CCCCEEEecCcCCHHHHHHHHHcC
Confidence            57789999999999   578987531   111         113456666654   36777776  47889999999999


Q ss_pred             CC--EEecCCCCCCCchHHHHHHhcCC-CEEE-EcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230          310 AH--IVNDVSAGQLDPDMYKVVAGLKV-PYVA-MHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI  384 (480)
Q Consensus       310 ~~--iINdVsg~~~d~~m~~l~~~~~~-~vVl-mh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I  384 (480)
                      ++  +||+.. .+ ++-+.+++++|+- .+|+ +..+ |.-.  .....           ..+.+.++.+.+. . .+=+
T Consensus       101 a~~viigt~~-~~-~~~~~~~~~~~~~~~iivslD~~~~~~~--~~~~~-----------~~~~~~~~~~~~~-~-~~li  163 (233)
T cd04723         101 ASRVIVGTET-LP-SDDDEDRLAALGEQRLVLSLDFRGGQLL--KPTDF-----------IGPEELLRRLAKW-P-EELI  163 (233)
T ss_pred             CCeEEEccee-cc-chHHHHHHHhcCCCCeEEEEeccCCeec--cccCc-----------CCHHHHHHHHHHh-C-CeEE
Confidence            77  556554 33 3456777788875 4443 3433 2111  00000           1123444444444 3 3457


Q ss_pred             EEecC-CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          385 IIDPG-LGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       385 ilDPg-iGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      +.|-. -|..+  ..++++++++ +..+.|+.+|
T Consensus       164 ~~di~~~G~~~--g~~~~~~~~i~~~~~ipvi~~  195 (233)
T cd04723         164 VLDIDRVGSGQ--GPDLELLERLAARADIPVIAA  195 (233)
T ss_pred             EEEcCccccCC--CcCHHHHHHHHHhcCCCEEEe
Confidence            88872 22221  2346667776 4568899886

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated

Probab=86.86  E-value=27  Score=36.16  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC--CCe-EEEeCCCHHHHHHHHHcCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME--GKL-VSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~--~~p-ISIDT~~~~v~~aaL~~G~  310 (480)
                      +..++.++.|+++|||+|=++ ++   .+..+|++.=-+-+.|-++.|.+..+..  +.+ +-+.--....++.-.+.|+
T Consensus       186 ~~~~~~~~~~~eaGad~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~  261 (346)
T PRK00115        186 DATIAYLNAQIEAGAQAVQIF-DS---WAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGA  261 (346)
T ss_pred             HHHHHHHHHHHHcCCCEEEEe-cC---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCC
Confidence            345677888999999999664 43   3346777553333344444443321111  233 3233322234555445699


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      +.++ +..   ...+.+....++-.+++|-+- .| .+-.      .. -+++.+...+.++.+     ....-|+=||-
T Consensus       262 ~~is-~d~---~~dl~~~k~~~g~~~~i~Gni-~p-~ll~------gt-~e~i~~~~~~~i~~~-----~~~gfIl~~Gc  323 (346)
T PRK00115        262 DVVG-LDW---TVDLAEARRRVGDKKALQGNL-DP-AVLL------AP-PEAIEEEVRAILDGG-----GGPGHIFNLGH  323 (346)
T ss_pred             CEEe-eCC---CCCHHHHHHHcCCCeEEEeCC-Ch-hHhc------CC-HHHHHHHHHHHHHHh-----CCCCeeeecCC
Confidence            8875 321   235666666677667776542 22 2111      11 234444444555544     22358999999


Q ss_pred             CCc-cChhHHHHHHHh
Q 038230          391 GFS-KKAEHNLDILLG  405 (480)
Q Consensus       391 Gf~-k~~~~~~~~lr~  405 (480)
                      |.. .+..+|++.+-+
T Consensus       324 ~i~~~tp~eNi~a~v~  339 (346)
T PRK00115        324 GILPETPPENVKALVE  339 (346)
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            874 666777766543

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional

Probab=86.70  E-value=33  Score=36.06  Aligned_cols=178  Identities=15%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCCC--CCCCC----------CHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTRP--MATKI----------SAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStrP--~a~~v----------~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      -|++.+++.|+++.+.|+.       ++=+|++.-|.  +....          +.++=+.....++..+.+.    ++|
T Consensus        65 ~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~----Glp  140 (353)
T PRK12755         65 HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVEL----GLP  140 (353)
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHh----CCC
Confidence            4688999999999999887       77888876443  22222          1134455555555555554    888


Q ss_pred             EEEeCCCHHHHHHHHHc------CCC-------------------EEecCCCCCCCchHHHHH------------HhcCC
Q 038230          292 VSVDTFYSKVASEAVGK------GAH-------------------IVNDVSAGQLDPDMYKVV------------AGLKV  334 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~------G~~-------------------iINdVsg~~~d~~m~~l~------------~~~~~  334 (480)
                      +.-+-.+|...+...+.      ||.                   +-|..+|.  -..++..+            .++|.
T Consensus       141 ~atE~ld~~~~~y~~Dlvs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~--i~~al~Ai~aa~~~H~fl~~~~~G~  218 (353)
T PRK12755        141 LATEALDPISPQYLGDLISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGS--LKVAINAIRAAAQPHRFLGINQEGQ  218 (353)
T ss_pred             EEEEecCcccHHHHHhhhhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCC--HHHHHHHHHHHhCCCeeeeeCCCCc
Confidence            87655555554444432      332                   23333321  12233332            13444


Q ss_pred             CEEEEcCCCCCCcc------ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230          335 PYVAMHMRGDPSTM------QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-  406 (480)
Q Consensus       335 ~vVlmh~~g~p~~~------~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-  406 (480)
                      ..|+ ++.|.|.+-      ...++|.+        +.+......+.+.|++ .+|++||..|- .|....-..+.+.+ 
T Consensus       219 ~~iv-~t~GN~~~hliLRGg~~~pNy~~--------~~i~~a~~~l~k~~l~-~~vmVD~SH~Ns~K~~~~Q~~V~~~v~  288 (353)
T PRK12755        219 VALL-ETRGNPDGHVILRGGKKGPNYDA--------ASVAACEAQLEKAGLR-PRLMIDCSHANSGKDYRRQPAVAEDVV  288 (353)
T ss_pred             EEEE-ECCCCCCEEEEeCCCCCCCCCCH--------HHHHHHHHHHHHcCCC-CcEEecCCccccccchhhhHHHHHHHH
Confidence            4444 445666432      12344443        3445666777888997 78999999885 55554333333333 


Q ss_pred             --ccCCCcEEEeeccccccc
Q 038230          407 --AASHAPILIGPSRKRFLG  424 (480)
Q Consensus       407 --~~~g~Pil~G~SrKsfi~  424 (480)
                        ..-|-.-+.|+==.||+.
T Consensus       289 ~qi~~G~~~I~GvMiES~l~  308 (353)
T PRK12755        289 AQIAAGNRSIIGVMIESHLE  308 (353)
T ss_pred             HHHHcCCCceEEEEEEEecc
Confidence              112333366776666653

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=86.65  E-value=5.8  Score=38.28  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230          238 SQVRLMISEGADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       238 ~~A~~~v~~GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN  314 (480)
                      +++++..+.|||+|=+.+... .|.      .++..   .+++.+++.   .++++..++.+.+.++.+.+.|+++|.
T Consensus        79 ~~v~~a~~aGad~I~~d~~~~~~p~------~~~~~---~~i~~~~~~---~~i~vi~~v~t~ee~~~a~~~G~d~i~  144 (221)
T PRK01130         79 KEVDALAAAGADIIALDATLRPRPD------GETLA---ELVKRIKEY---PGQLLMADCSTLEEGLAAQKLGFDFIG  144 (221)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCC------CCCHH---HHHHHHHhC---CCCeEEEeCCCHHHHHHHHHcCCCEEE
Confidence            457888899999887764211 121      12333   345555652   288999999999999999999999995

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type

Probab=86.63  E-value=47  Score=35.21  Aligned_cols=166  Identities=16%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-
Q 038230          221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSVDTFY-  298 (480)
Q Consensus       221 pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-  298 (480)
                      -|.|-+..+-  ..+..+..+++.+.|++.|.+-..--.|...+..+ ++.++++.   +.+.+.    ++.++.=|.+ 
T Consensus        21 ~~~~g~~~~~--~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk---~~L~~~----GL~v~~v~~nl   91 (382)
T TIGR02631        21 RDPFGDATRT--ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFK---KALDET----GLKVPMVTTNL   91 (382)
T ss_pred             CCCCCCCCCC--CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHH---HHHHHh----CCeEEEeeccc
Confidence            3778776442  23455667778889999999864222232211111 11123332   333443    7765543332 


Q ss_pred             H--HHHHHHHHcCCCEEecCCCC------CCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          299 S--KVASEAVGKGAHIVNDVSAG------QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       299 ~--~v~~aaL~~G~~iINdVsg~------~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                      +  ..    .+.| .+.+. ...      ..-.+.++++++.||+.|.++....+.....  ...+....+...+.|.+.
T Consensus        92 ~~~~~----~~~g-~las~-d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~--~~d~~~a~~~~~e~L~~l  163 (382)
T TIGR02631        92 FSHPV----FKDG-GFTSN-DRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDG--AKDVRAALDRMREALNLL  163 (382)
T ss_pred             cCCcc----ccCC-CCCCC-CHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCcc--ccCHHHHHHHHHHHHHHH
Confidence            0  00    0112 11111 000      0013467899999999888775312111000  011334455566777788


Q ss_pred             HHHHHHC--CCCCCCEEEecCCC------CccChhHHHHHHHhc
Q 038230          371 VRDAELS--GIPAWRIIIDPGLG------FSKKAEHNLDILLGL  406 (480)
Q Consensus       371 i~~a~~~--Gi~~~~IilDPgiG------f~k~~~~~~~~lr~l  406 (480)
                      .+.+.+.  ||   +|.|-|--.      |..+..+.+.+++.+
T Consensus       164 ae~A~~~G~GV---~laLEp~p~~~~~~~ll~T~~~al~li~~v  204 (382)
T TIGR02631       164 AAYAEDQGYGL---RFALEPKPNEPRGDILLPTVGHALAFIETL  204 (382)
T ss_pred             HHHHHhhCCCc---EEEEccCCCCCCcceecCCHHHHHHHHHHc
Confidence            8888886  58   499988532      456777888888876

This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=86.60  E-value=3.6  Score=42.86  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          220 TPDSFSDGGKFQSVEAAVSQVRLMISEG-ADMIDIGAQSTRPM------ATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       220 tpDSFsdgg~~~~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~------a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      .++-+..||  .+.++.++.++.+.+.| +|+|+|-+.+....      ..+....+.  ...+.++.+++.   .++||
T Consensus       216 ~~~~~~~~G--~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ik~~---~~ipv  288 (343)
T cd04734         216 SGDEDTEGG--LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG--PFLPLAARIKQA---VDLPV  288 (343)
T ss_pred             ehhhccCCC--CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc--hhHHHHHHHHHH---cCCCE
Confidence            344444555  47889999999999998 89999932222110      000000111  112344555554   25666


Q ss_pred             EE--eCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230          293 SV--DTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL  332 (480)
Q Consensus       293 SI--DT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~  332 (480)
                      ..  +-.+++.++++++.| +|+|---.+.-.+|.+..-+++-
T Consensus       289 i~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g  331 (343)
T cd04734         289 FHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREG  331 (343)
T ss_pred             EeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcC
Confidence            55  346899999999975 89887555555578877776653

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=86.50  E-value=36  Score=33.70  Aligned_cols=172  Identities=19%  Similarity=0.247  Sum_probs=94.2

Q ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC
Q 038230          241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ  320 (480)
Q Consensus       241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~  320 (480)
                      ++..+.|+|.|=||| |+     .++    -+.+..+++.+++.    ++|+-+-=.+++.+....  -+-++.++-...
T Consensus        26 ~~~~~~gtdai~vGG-S~-----~vt----~~~~~~~v~~ik~~----~lPvilfp~~~~~i~~~a--Da~l~~svlNs~   89 (232)
T PRK04169         26 EAICESGTDAIIVGG-SD-----GVT----EENVDELVKAIKEY----DLPVILFPGNIEGISPGA--DAYLFPSVLNSR   89 (232)
T ss_pred             HHHHhcCCCEEEEcC-CC-----ccc----hHHHHHHHHHHhcC----CCCEEEeCCCccccCcCC--CEEEEEEEecCC
Confidence            668889999999997 32     233    23455667777863    789998777766554331  222334433222


Q ss_pred             CCc--------hHHHHHHhcCC-----CEEEEcCCCCCCc--cccccccchhhHHHHHHHHHHHHHHH-HHHCCCCCCCE
Q 038230          321 LDP--------DMYKVVAGLKV-----PYVAMHMRGDPST--MQNEENLQYDDVCKQVASELYSKVRD-AELSGIPAWRI  384 (480)
Q Consensus       321 ~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~--~~~~~~~~~~~v~~ev~~~l~~~i~~-a~~~Gi~~~~I  384 (480)
                       ++        +.++..+.++.     +||++...+....  .....+.+.+++    .    ..... .+-.|.+  .+
T Consensus        90 -~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~----~----~~~~lA~~~~g~~--~v  158 (232)
T PRK04169         90 -NPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDI----A----AYAALAAEYLGMP--IV  158 (232)
T ss_pred             -CcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHH----H----HHHHHHHHHcCCC--eE
Confidence             22        24455555554     5666654322111  001111111221    1    11122 2556777  89


Q ss_pred             EEecCCCCccChhHHHHHHHhc-ccCCC-cEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCCh
Q 038230          385 IIDPGLGFSKKAEHNLDILLGL-AASHA-PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNI  459 (480)
Q Consensus       385 ilDPgiGf~k~~~~~~~~lr~l-~~~g~-Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV  459 (480)
                      +++=|-|++...  +.++++++ +..+. |+++|-          |-     |...++   ..++..||+.+-|=..
T Consensus       159 Yle~gs~~g~~~--~~e~I~~v~~~~~~~pvivGG----------GI-----rs~e~a---~~~l~~GAD~VVVGSa  215 (232)
T PRK04169        159 YLEYGGGAGDPV--PPEMVKAVKKALDITPLIYGG----------GI-----RSPEQA---RELMAAGADTIVVGNI  215 (232)
T ss_pred             EEECCCCCCCCC--CHHHHHHHHHhcCCCcEEEEC----------CC-----CCHHHH---HHHHHhCCCEEEEChH
Confidence            999887765542  35566666 34566 999983          22     222222   3457789998888664

>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type

Probab=86.41  E-value=33  Score=38.32  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH-HHHHHH
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS-KVASEA  305 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~-~v~~aa  305 (480)
                      -|..++.++=++.|+.+.+.|.|.|.+|..+..        +.|.+.+..+++.-. ..  .++.++.=+... .-++.|
T Consensus        41 ~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s--------~~D~e~v~~i~~~~l-~~--~~~~i~al~~~~~~did~a  109 (564)
T TIGR00970        41 LPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS--------QTDFDFVREIIEQGA-IP--DDVTIQVLTQSREELIERT  109 (564)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--------HHHHHHHHHHHHhcC-CC--CCcEEEEEcCCchhhHHHH
Confidence            356789999999999999999999999964433        244554444443310 00  134555544443 337788


Q ss_pred             HHc--CCC-----EEecCC
Q 038230          306 VGK--GAH-----IVNDVS  317 (480)
Q Consensus       306 L~~--G~~-----iINdVs  317 (480)
                      +++  |++     +..++|
T Consensus       110 ~~a~~~~~~~~v~i~~~~S  128 (564)
T TIGR00970       110 FEALSGAKRATVHFYNATS  128 (564)
T ss_pred             HHHhcCCCCCEEEEEEcCC
Confidence            876  443     555554

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=86.29  E-value=16  Score=36.79  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...++++.+++.|++-|=++| ||.-+ ...+. +|..++.. +++.....   ..+...+-+.
T Consensus         7 ~TP--f~~~g~-iD~~~~~~~i~~l~~~Gv~Gi~~~G-stGE~-~~Ls~-~Er~~~~~~~~~~~~~~---~~vi~gv~~~   77 (285)
T TIGR00674         7 ITP--FKEDGS-VDFAALEKLIDFQIENGTDAIVVVG-TTGES-PTLSH-EEHKKVIEFVVDLVNGR---VPVIAGTGSN   77 (285)
T ss_pred             eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cCccc-ccCCH-HHHHHHHHHHHHHhCCC---CeEEEeCCCc
Confidence            477  766665 7999999999999999999999987 33333 34454 55666554 44444432   2445566544


Q ss_pred             CH-HHH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          298 YS-KVA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +. +++   +.|-+.|+|-+--+.-.-.   ++++    ..++...+.++++-+.
T Consensus        78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~  132 (285)
T TIGR00674        78 ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV  132 (285)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            44 333   3444459997765543211   2333    3345557889987654

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=86.07  E-value=3.9  Score=43.26  Aligned_cols=104  Identities=19%  Similarity=0.245  Sum_probs=65.7

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHH
Q 038230          224 FSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSK  300 (480)
Q Consensus       224 Fsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~  300 (480)
                      |.++|  .+.+++++.++.+.+.|+|+|+|-+.+........+. ..+-....+.++.+++.   .++||..  +-..++
T Consensus       244 ~~~~g--~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~---~~~pvi~~G~i~~~~  318 (382)
T cd02931         244 FQEKG--RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEV---VDVPVIMAGRMEDPE  318 (382)
T ss_pred             cccCC--CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHH---CCCCEEEeCCCCCHH
Confidence            44554  5889999999999999999999965331100000000 00001112344555554   2556544  556899


Q ss_pred             HHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230          301 VASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL  332 (480)
Q Consensus       301 v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~  332 (480)
                      .++++|+.| +|+|---.+...||.+..-+++-
T Consensus       319 ~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g  351 (382)
T cd02931         319 LASEAINEGIADMISLGRPLLADPDVVNKIRRG  351 (382)
T ss_pred             HHHHHHHcCCCCeeeechHhHhCccHHHHHHcC
Confidence            999999986 89997666666678888777664

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=85.99  E-value=30  Score=33.72  Aligned_cols=151  Identities=18%  Similarity=0.252  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC-----------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF-----------  297 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~-----------  297 (480)
                      .+.+++...+++. +.|||+|.+=...-    ...+..+...++...+..++.     ++|+-+  =|.           
T Consensus         9 ~~~~~~~~~~~~~-~~~aD~vElRlD~l----~~~~~~~~~~~~~~~~~~~~~-----~~piI~T~R~~~eGG~~~~~~~   78 (228)
T TIGR01093         9 PDLEEALATAEKI-CKGADIVELRVDLL----KDPSSNNDVDALIEQLSQLRP-----DKPLIFTIRTISEGGKFPGNEE   78 (228)
T ss_pred             CCHHHHHHHHHHh-ccCCCEEEEEechh----cccCcHHHHHHHHHHHHHhcC-----CCcEEEEECChhhCCCCCCCHH
Confidence            4677888888887 89999998865321    111122344455444444442     345443  222           


Q ss_pred             -CHHHHHHH-HHcCCCEEecCCCCCCCch---HHHHHHhcCCCEEEEc-C-CCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          298 -YSKVASEA-VGKGAHIVNDVSAGQLDPD---MYKVVAGLKVPYVAMH-M-RGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       298 -~~~v~~aa-L~~G~~iINdVsg~~~d~~---m~~l~~~~~~~vVlmh-~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                       +.+.++.+ +..|+++| ||.-...++.   +...+++.++.+|+.+ + .++|..                 +.+.+.
T Consensus        79 ~~~~ll~~~~~~~~~d~v-DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~-----------------~~l~~~  140 (228)
T TIGR01093        79 EYLEELKRAADSPGPDFV-DIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSW-----------------EEIVER  140 (228)
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCH-----------------HHHHHH
Confidence             12334555 45578887 4653322233   3344467788988864 3 334421                 334577


Q ss_pred             HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---c-cCCCcEE
Q 038230          371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---A-ASHAPIL  414 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~-~~g~Pil  414 (480)
                      ++.+.+.|-+-=+|..     .+++..+++.+++-.   + ....|++
T Consensus       141 ~~~~~~~gaDivKia~-----~a~~~~D~~~ll~~~~~~~~~~~~p~i  183 (228)
T TIGR01093       141 LEKALSYGADIVKIAV-----MANSKEDVLTLLEITNKVDEHADVPLI  183 (228)
T ss_pred             HHHHHHhCCCEEEEEe-----ccCCHHHHHHHHHHHHHHHhcCCCCEE
Confidence            8888888854334444     346677777776543   1 2456753

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=85.86  E-value=36  Score=33.14  Aligned_cols=109  Identities=16%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH--HHH--------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA--EKE--------LERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~--~eE--------~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+.++-.+.-+-+...|+|||.+|..-+-|-++.-..  ..+        +..+...++..+..-  ..+||-+=+|+-
T Consensus        28 ~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~g--vt~PIiLmgYYN  105 (268)
T KOG4175|consen   28 DPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQG--VTCPIILMGYYN  105 (268)
T ss_pred             CCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccC--cccceeeeeccc
Confidence            34677777777888899999999998655554432111  111        234444555555441  357898888876


Q ss_pred             HHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -.+..+.        ++|+.  ||-|+--++ -..+-.-+++++..+|.+-.
T Consensus       106 PIl~yG~e~~iq~ak~aGanGfiivDlPpEE-a~~~Rne~~k~gislvpLva  156 (268)
T KOG4175|consen  106 PILRYGVENYIQVAKNAGANGFIIVDLPPEE-AETLRNEARKHGISLVPLVA  156 (268)
T ss_pred             HHHhhhHHHHHHHHHhcCCCceEeccCChHH-HHHHHHHHHhcCceEEEeeC
Confidence            6655544        45766  777776433 35678889999999998764

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=85.78  E-value=37  Score=33.66  Aligned_cols=153  Identities=16%  Similarity=0.160  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~  310 (480)
                      .+.+++++.|   .+.|-+.+.+...........-..+++++.++..+   .+.   .++.+++-+..            
T Consensus        10 ~~l~~~l~~a---~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~---~~~---~~~~i~~~~~~------------   68 (279)
T cd00019          10 FGLENALKRA---KEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIA---EEG---PSICLSVHAPY------------   68 (279)
T ss_pred             ccHHHHHHHH---HHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHH---HHc---CCCcEEEEcCc------------
Confidence            4555555555   46799999875422211111111235666665444   332   14556654322            


Q ss_pred             CEEecCCCCC--------CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          311 HIVNDVSAGQ--------LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       311 ~iINdVsg~~--------~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                       .+|-.+...        .-...++++++.|+++|.+|....+..       ..++......+.+.+..+.|.+.||   
T Consensus        69 -~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~-------~~~~~~~~~~~~l~~l~~~a~~~gi---  137 (279)
T cd00019          69 -LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQ-------SKEEGLKRVIEALNELIDKAETKGV---  137 (279)
T ss_pred             -eeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCC-------CHHHHHHHHHHHHHHHHHhccCCCC---
Confidence             122221110        014688999999999999886422210       1133445556777788888889999   


Q ss_pred             CEEEecCCCC----ccChhHHHHHHHhcc-cCCCcEEE
Q 038230          383 RIIIDPGLGF----SKKAEHNLDILLGLA-ASHAPILI  415 (480)
Q Consensus       383 ~IilDPgiGf----~k~~~~~~~~lr~l~-~~g~Pil~  415 (480)
                      +|.+-|..+.    ..+..+..++++.+. .+.+-+++
T Consensus       138 ~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~l  175 (279)
T cd00019         138 VIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCI  175 (279)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEE
Confidence            4999885433    466677778888764 44454554

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>cd03309 CmuC_like CmuC_like

Probab=85.75  E-value=40  Score=34.82  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHc-CCCEEEeC----CCCCCCCCCCCCHHHHHHHH----HHHHHHHHcCCcCCCCeEEE--eCCCHHHH
Q 038230          234 EAAVSQVRLMISE-GADMIDIG----AQSTRPMATKISAEKELERL----IPVLEAVLTMPEMEGKLVSV--DTFYSKVA  302 (480)
Q Consensus       234 e~a~~~A~~~v~~-GAdiIDIG----~eStrP~a~~v~~~eE~~rl----~~vi~~l~~~~~~~~~pISI--DT~~~~v~  302 (480)
                      +..++.++.|+++ |||+|=+.    +++    ...+|+++=.+-+    +.+++.+++.   .+.|+.+  +-.....+
T Consensus       155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~----~~~LSpe~f~efv~P~~krIi~~ik~~---~g~piilH~cG~~~~~l  227 (321)
T cd03309         155 DAKLKLYERRIKHLEPDLLVYHDDLGSQK----GSFISPATFREFILPRMQRIFDFLRSN---TSALIVHHSCGAAASLV  227 (321)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCcccc----CCccCHHHHHHHHHHHHHHHHHHHHhc---cCCceEEEeCCCcHHHH
Confidence            4456778889998 99999883    322    2456765533333    4455555543   2455555  55444566


Q ss_pred             HHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          303 SEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       303 ~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      +.-.+.|++++| +.   .. ..+.++.+.++-.++++-+- .|.....      ...-+++.+..++.++.+..    .
T Consensus       228 ~~~~e~g~dvl~-~d---~~~~dl~eak~~~g~k~~l~GNl-Dp~~L~~------~~t~E~i~~~v~~~l~~~g~----~  292 (321)
T cd03309         228 PSMAEMGVDSWN-VV---MTANNTAELRRLLGDKVVLAGAI-DDVALDT------ATWPEEDARGVAKAAAECAP----I  292 (321)
T ss_pred             HHHHHcCCCEEE-ec---CCCCCHHHHHHHhCCCeEEEcCC-ChHHhcC------CCCHHHHHHHHHHHHHHhCC----C
Confidence            666777999998 22   12 36777778888888887652 2321110      11112334444444444422    2


Q ss_pred             CCEEEecCCCCc-cChhHHHHHHHh
Q 038230          382 WRIIIDPGLGFS-KKAEHNLDILLG  405 (480)
Q Consensus       382 ~~IilDPgiGf~-k~~~~~~~~lr~  405 (480)
                      ...|+.|+-+-. ....+|+..+.+
T Consensus       293 ~~fIf~~~~~~~~~~~~~~~~~~~~  317 (321)
T cd03309         293 HPFISAPTAGLPFSIFPEVLRRVSA  317 (321)
T ss_pred             CCEEeCccCCCCcccCHHHHHHHHH
Confidence            478999987643 333455655543

Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=85.44  E-value=4.8  Score=41.81  Aligned_cols=67  Identities=15%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCC
Q 038230          235 AAVSQVRLMISEGA--DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAH  311 (480)
Q Consensus       235 ~a~~~A~~~v~~GA--diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~  311 (480)
                      +..+++.+++++|+  |+|-|=.  |.+.         .+.+...|+.|++..  .++||.. |...++.++.+.++|+|
T Consensus        97 ~~~~~~~~Lv~ag~~~d~i~iD~--a~gh---------~~~~~e~I~~ir~~~--p~~~vi~g~V~t~e~a~~l~~aGad  163 (326)
T PRK05458         97 DEYDFVDQLAAEGLTPEYITIDI--AHGH---------SDSVINMIQHIKKHL--PETFVIAGNVGTPEAVRELENAGAD  163 (326)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEC--CCCc---------hHHHHHHHHHHHhhC--CCCeEEEEecCCHHHHHHHHHcCcC
Confidence            46789999999965  9998853  3343         234455578888763  3588888 89999999999999999


Q ss_pred             EEe
Q 038230          312 IVN  314 (480)
Q Consensus       312 iIN  314 (480)
                      +|.
T Consensus       164 ~i~  166 (326)
T PRK05458        164 ATK  166 (326)
T ss_pred             EEE
Confidence            975

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=85.26  E-value=4.4  Score=41.90  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i  312 (480)
                      ++..++++.++++|+++|.|......+           +...+.|+.+++..  .+++|.+ +-..++.++.++++|+|.
T Consensus        93 ~~~~~~~~~l~eagv~~I~vd~~~G~~-----------~~~~~~i~~ik~~~--p~v~Vi~G~v~t~~~A~~l~~aGaD~  159 (325)
T cd00381          93 EDDKERAEALVEAGVDVIVIDSAHGHS-----------VYVIEMIKFIKKKY--PNVDVIAGNVVTAEAARDLIDAGADG  159 (325)
T ss_pred             hhHHHHHHHHHhcCCCEEEEECCCCCc-----------HHHHHHHHHHHHHC--CCceEEECCCCCHHHHHHHHhcCCCE
Confidence            346789999999999999886422111           13344567777652  2478776 778889999999999999


Q ss_pred             Ee
Q 038230          313 VN  314 (480)
Q Consensus       313 IN  314 (480)
                      |-
T Consensus       160 I~  161 (325)
T cd00381         160 VK  161 (325)
T ss_pred             EE
Confidence            85

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=85.19  E-value=28  Score=37.97  Aligned_cols=74  Identities=22%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CC--HHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FY--SKVASE  304 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~--~~v~~a  304 (480)
                      ..+.+-.++.|+++.+.|||.|-|.=  |.   ... ..++...+   ++++++.   .++||.+=+   +-  .....+
T Consensus       159 ~~t~~y~~~~a~~l~~~Gad~I~IkD--ta---G~l-~P~~v~~L---v~alk~~---~~~pi~~H~Hnt~GlA~An~la  226 (468)
T PRK12581        159 VHTLNYYLSLVKELVEMGADSICIKD--MA---GIL-TPKAAKEL---VSGIKAM---TNLPLIVHTHATSGISQMTYLA  226 (468)
T ss_pred             cCcHHHHHHHHHHHHHcCCCEEEECC--CC---CCc-CHHHHHHH---HHHHHhc---cCCeEEEEeCCCCccHHHHHHH
Confidence            34788999999999999999998862  11   111 22455554   4555554   479999944   33  445568


Q ss_pred             HHHcCCCEEec
Q 038230          305 AVGKGAHIVND  315 (480)
Q Consensus       305 aL~~G~~iINd  315 (480)
                      |+++|+++|..
T Consensus       227 AieAGad~vD~  237 (468)
T PRK12581        227 AVEAGADRIDT  237 (468)
T ss_pred             HHHcCCCEEEe
Confidence            89999998863

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=85.19  E-value=3  Score=42.60  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230          216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA  255 (480)
Q Consensus       216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~  255 (480)
                      +||+--|+|...|    .|++++|++.+.++|||.|=+-+
T Consensus       152 ~IiARTDa~~~~g----~deAI~Ra~aY~eAGAD~ifi~~  187 (292)
T PRK11320        152 VIMARTDALAVEG----LDAAIERAQAYVEAGADMIFPEA  187 (292)
T ss_pred             EEEEecCcccccC----HHHHHHHHHHHHHcCCCEEEecC
Confidence            6777889997544    79999999999999999999864

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=85.19  E-value=22  Score=34.71  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G  309 (480)
                      +.++.|+.+.+.||+   ++|+....+.++.           -.+.++.+++.   .++||.+  .-.+.+.+++.++.|
T Consensus        28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~-----------~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G   93 (243)
T cd04731          28 DPVELAKRYNEQGADELVFLDITASSEGRET-----------MLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAG   93 (243)
T ss_pred             CHHHHHHHHHHCCCCEEEEEcCCcccccCcc-----------cHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcC
Confidence            466788888899999   9999875443321           12445566655   3577776  568899999999999


Q ss_pred             CCEEecCCCC-CCCch-HHHHHHhcCC-CEEE-EcCC-CCC--CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          310 AHIVNDVSAG-QLDPD-MYKVVAGLKV-PYVA-MHMR-GDP--STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       310 ~~iINdVsg~-~~d~~-m~~l~~~~~~-~vVl-mh~~-g~p--~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      ++.+- +... -.+++ +.+++++++. .+++ +..+ +.+  ....-+  --++..    .....+.+..+.+.|+.  
T Consensus        94 ~~~v~-ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~--~~~~~~----~~~~~~~~~~l~~~G~d--  164 (243)
T cd04731          94 ADKVS-INSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTH--GGRKPT----GLDAVEWAKEVEELGAG--  164 (243)
T ss_pred             CceEE-ECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEc--CCceec----CCCHHHHHHHHHHCCCC--
Confidence            87552 3322 12444 5666677753 3443 2221 111  000000  000000    01123555677888997  


Q ss_pred             CEEE---ecCCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          383 RIII---DPGLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       383 ~Iil---DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      .|++   ++. |...  ..++++++++ +..+.|++..
T Consensus       165 ~i~v~~i~~~-g~~~--g~~~~~i~~i~~~~~~pvia~  199 (243)
T cd04731         165 EILLTSMDRD-GTKK--GYDLELIRAVSSAVNIPVIAS  199 (243)
T ss_pred             EEEEeccCCC-CCCC--CCCHHHHHHHHhhCCCCEEEe
Confidence            5666   431 1111  1257777777 3468998763

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=84.93  E-value=21  Score=35.95  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...++++.+++.|++-|=++|. |.-+ ...+. +|..++.. +++.....   ..+.+.+=+.
T Consensus        10 ~TP--f~~dg~-iD~~~l~~~i~~l~~~Gv~gi~~~Gs-~GE~-~~ls~-~Er~~~~~~~~~~~~~~---~~vi~gv~~~   80 (292)
T PRK03170         10 VTP--FKEDGS-VDFAALRKLVDYLIANGTDGLVVVGT-TGES-PTLTH-EEHEELIRAVVEAVNGR---VPVIAGTGSN   80 (292)
T ss_pred             eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECCc-CCcc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEeecCCc
Confidence            467  766664 79999999999999999999999874 3322 34454 55666554 44443322   2334445433


Q ss_pred             CH-HHH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          298 YS-KVA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +. +++   +.|-++|++-+--+...-.   ++++    -.++...+.|+++-+.
T Consensus        81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~  135 (292)
T PRK03170         81 STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV  135 (292)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            33 332   3344469997765543211   2333    3345556899998764

>PRK08508 biotin synthase; Provisional

Probab=84.92  E-value=14  Score=37.24  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAVG  307 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL~  307 (480)
                      +.++|++++.|++..+.|+.-+-+- .|++ +.   + +.+++++..+++.+++..  .++.+  |.=..+++++++--+
T Consensus        39 ~~s~eeI~~~a~~a~~~g~~~~~lv-~sg~-~~---~-~~~~e~~~ei~~~ik~~~--p~l~i~~s~G~~~~e~l~~Lk~  110 (279)
T PRK08508         39 RKDIEQIVQEAKMAKANGALGFCLV-TSGR-GL---D-DKKLEYVAEAAKAVKKEV--PGLHLIACNGTASVEQLKELKK  110 (279)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEE-eccC-CC---C-cccHHHHHHHHHHHHhhC--CCcEEEecCCCCCHHHHHHHHH
Confidence            3699999999999999999887762 1122 11   1 246788999999998752  24433  555557888888778


Q ss_pred             cCCCEEe-----------cCCC-CCCCc--hHHHHHHhcCCCEE
Q 038230          308 KGAHIVN-----------DVSA-GQLDP--DMYKVVAGLKVPYV  337 (480)
Q Consensus       308 ~G~~iIN-----------dVsg-~~~d~--~m~~l~~~~~~~vV  337 (480)
                      +|++.+|           .+.. .++++  +.++.+++.|..+.
T Consensus       111 aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~  154 (279)
T PRK08508        111 AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC  154 (279)
T ss_pred             cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence            9999888           2321 11111  25566888886554

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=84.90  E-value=4.1  Score=41.46  Aligned_cols=71  Identities=13%  Similarity=-0.005  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCCHHHHHHHHHcCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFYSKVASEAVGKGA  310 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~~~v~~aaL~~G~  310 (480)
                      +++...+.+++..+.||+.|+++.....++..     ..+    ..++.+++.   .++||.+= ...++.++.|.++|+
T Consensus       127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-----~~~----~~i~~l~~~---~~~pvivK~v~s~~~a~~a~~~G~  194 (299)
T cd02809         127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRR-----LTW----DDLAWLRSQ---WKGPLILKGILTPEDALRAVDAGA  194 (299)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-----CCH----HHHHHHHHh---cCCCEEEeecCCHHHHHHHHHCCC
Confidence            45666666777778899999998755433322     112    345666665   36777754 467788888888888


Q ss_pred             CEEe
Q 038230          311 HIVN  314 (480)
Q Consensus       311 ~iIN  314 (480)
                      +.|-
T Consensus       195 d~I~  198 (299)
T cd02809         195 DGIV  198 (299)
T ss_pred             CEEE
Confidence            8774

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd02812 PcrB_like PcrB_like proteins

Probab=84.86  E-value=20  Score=35.19  Aligned_cols=170  Identities=18%  Similarity=0.224  Sum_probs=89.3

Q ss_pred             HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecC
Q 038230          239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDV  316 (480)
Q Consensus       239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdV  316 (480)
                      .++...+.|+|.|=||| |     ..++  +.++.   +++.+++..  .++|+-+-=.+++.+.    .|+|  ++.++
T Consensus        17 ~~~~~~~~gtdai~vGG-S-----~~v~--~~~~~---~~~~ik~~~--~~~Pvilfp~~~~~i~----~~aDa~l~~sv   79 (219)
T cd02812          17 IAKLAEESGTDAIMVGG-S-----DGVS--STLDN---VVRLIKRIR--RPVPVILFPSNPEAVS----PGADAYLFPSV   79 (219)
T ss_pred             HHHHHHhcCCCEEEECC-c-----cchh--hhHHH---HHHHHHHhc--CCCCEEEeCCCccccC----cCCCEEEEEee
Confidence            34444459999999997 2     2232  33444   444444431  1488988888887763    3444  34443


Q ss_pred             CCCCCCch--------HHHHHHh--cCC-----CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          317 SAGQLDPD--------MYKVVAG--LKV-----PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       317 sg~~~d~~--------m~~l~~~--~~~-----~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      -... +++        -++..++  .+-     +|+++...+.-....+ .+.  .+-.    +....-...++..|+. 
T Consensus        80 lns~-n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~-a~~--~~~~----e~~~ayA~aae~~g~~-  150 (219)
T cd02812          80 LNSG-DPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTG-AKT--DLKP----EDAAAYALAAEYLGMP-  150 (219)
T ss_pred             ecCC-CchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeec-cCc--CCCH----HHHHHHHHHHHHcCCe-
Confidence            3222 333        2333333  222     6777765432211100 000  0111    1222334456788865 


Q ss_pred             CCEEEecCCCCccChhHHHHHHHhc-ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          382 WRIIIDPGLGFSKKAEHNLDILLGL-AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                       =+++| +-|-.    .+.++++++ +.. +.|+.+|-          |-     |....+   ..+...||+.+-+=.
T Consensus       151 -ivyLe-~SG~~----~~~e~I~~v~~~~~~~pl~vGG----------GI-----rs~e~a---~~l~~aGAD~VVVGs  205 (219)
T cd02812         151 -IVYLE-YSGAY----GPPEVVRAVKKVLGDTPLIVGG----------GI-----RSGEQA---KEMAEAGADTIVVGN  205 (219)
T ss_pred             -EEEeC-CCCCc----CCHHHHHHHHHhcCCCCEEEeC----------CC-----CCHHHH---HHHHHcCCCEEEECc
Confidence             68888 55544    346667666 345 89999983          22     222222   345567998887765

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=84.79  E-value=15  Score=40.54  Aligned_cols=145  Identities=18%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC------------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY------------  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~------------  298 (480)
                      .+.++++..+++....|||+|.+=..--.    ..+..+++.   .+++    .   .+.|+-+ |++            
T Consensus        32 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~~~---~~~~----~---~~~plI~-T~R~~~eGG~~~~~~   96 (529)
T PLN02520         32 DSVDKMLIEMAKAKELGADLVEIRLDFLK----NFNPREDLK---TLIK----Q---SPLPTLV-TYRPKWEGGQYEGDE   96 (529)
T ss_pred             CCHHHHHHHHHHhhhcCCCEEEEEecccc----ccCCHHHHH---HHHh----c---CCCcEEE-EeccHHHCCCCCCCH
Confidence            34788888898888899999988653211    111122222   2221    2   2445433 333            


Q ss_pred             ---HHHHHHHHHcCCCEEecCCCCCCCchH---HHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          299 ---SKVASEAVGKGAHIVNDVSAGQLDPDM---YKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       299 ---~~v~~aaL~~G~~iINdVsg~~~d~~m---~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                         -+..+.+++.|+++| ||--.. .+++   +.-++..++.+|+. |+ .++|..                 +.+.+.
T Consensus        97 ~~~~~ll~~~~~~~~d~i-DiEl~~-~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~-----------------~el~~~  157 (529)
T PLN02520         97 NKRQDALRLAMELGADYV-DVELKV-AHEFINSISGKKPEKCKVIVSSHNYENTPSV-----------------EELGNL  157 (529)
T ss_pred             HHHHHHHHHHHHhCCCEE-EEEcCC-chhHHHHHHhhhhcCCEEEEEecCCCCCCCH-----------------HHHHHH
Confidence               335677888898887 464322 2344   33444568888875 54 455531                 345577


Q ss_pred             HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEE
Q 038230          371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPIL  414 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil  414 (480)
                      ++++.+.|-+--+|..     +.++..+++++++.....+.|++
T Consensus       158 ~~~~~~~gaDi~Kia~-----~~~~~~D~~~ll~~~~~~~~p~i  196 (529)
T PLN02520        158 VARIQATGADIVKIAT-----TALDITDVARMFQITVHSQVPTI  196 (529)
T ss_pred             HHHHHHhCCCEEEEec-----CCCCHHHHHHHHHHHhhcCCCEE
Confidence            7788888854223333     56778888888864433477864

>PLN02428 lipoic acid synthase

Probab=84.76  E-value=30  Score=36.36  Aligned_cols=143  Identities=12%  Similarity=0.112  Sum_probs=80.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----CHHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----YSKVASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~~~v~~aa  305 (480)
                      ..+.++..+.|+...+.|++.+-|=+. +++.   . ++.+.+.+..+++.|++..  .++.|.+=+.    +.+.++.-
T Consensus       129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg-~rdd---l-~D~ga~~~~elir~Ir~~~--P~i~Ie~L~pdf~~d~elL~~L  201 (349)
T PLN02428        129 PPDPDEPENVAEAIASWGVDYVVLTSV-DRDD---L-PDGGSGHFAETVRRLKQLK--PEILVEALVPDFRGDLGAVETV  201 (349)
T ss_pred             CCChhhHHHHHHHHHHcCCCEEEEEEc-CCCC---C-CcccHHHHHHHHHHHHHhC--CCcEEEEeCccccCCHHHHHHH
Confidence            356788889999999999987654221 1111   1 2356778888888888752  2343443211    45566666


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCCC
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAWR  383 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~~  383 (480)
                      .++|.+.+| .+.+. .+++.+.+.+.                    ...|+        ...+.++.+.+.  |+.   
T Consensus       202 ~eAG~d~i~-hnlET-v~rL~~~Ir~~--------------------~~sye--------~~Le~L~~ak~~~pGi~---  248 (349)
T PLN02428        202 ATSGLDVFA-HNIET-VERLQRIVRDP--------------------RAGYK--------QSLDVLKHAKESKPGLL---  248 (349)
T ss_pred             HHcCCCEEc-cCccC-cHHHHHHhcCC--------------------CCCHH--------HHHHHHHHHHHhCCCCe---
Confidence            666777766 22222 34444433210                    01122        233556666666  774   


Q ss_pred             EEEecCCCCccChhHHHHHHHhcccCCCc
Q 038230          384 IIIDPGLGFSKKAEHNLDILLGLAASHAP  412 (480)
Q Consensus       384 IilDPgiGf~k~~~~~~~~lr~l~~~g~P  412 (480)
                      +---=.+|++.+.++-.++++.++..++-
T Consensus       249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd  277 (349)
T PLN02428        249 TKTSIMLGLGETDEEVVQTMEDLRAAGVD  277 (349)
T ss_pred             EEEeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence            22222347788888877777777544443

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=84.41  E-value=5.5  Score=40.22  Aligned_cols=82  Identities=17%  Similarity=0.088  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCC---------CCCCCC----CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGA---------QSTRPM----ATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFY  298 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~---------eStrP~----a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~  298 (480)
                      ++..+.|+.+.+.|||.|++-.         ++.+|-    ....+....+..-.+.++.+++.   .++||.-  +-++
T Consensus       166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~---~~ipii~~GGI~~  242 (296)
T cd04740         166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA---VEIPIIGVGGIAS  242 (296)
T ss_pred             hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh---cCCCEEEECCCCC
Confidence            3577788888999999998721         111110    00011111122223445555554   2455554  3456


Q ss_pred             HHHHHHHHHcCCCEEecCCC
Q 038230          299 SKVASEAVGKGAHIVNDVSA  318 (480)
Q Consensus       299 ~~v~~aaL~~G~~iINdVsg  318 (480)
                      ++.+++++++|++.|---++
T Consensus       243 ~~da~~~l~~GAd~V~igra  262 (296)
T cd04740         243 GEDALEFLMAGASAVQVGTA  262 (296)
T ss_pred             HHHHHHHHHcCCCEEEEchh
Confidence            77777777777777764444

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=84.23  E-value=14  Score=37.19  Aligned_cols=120  Identities=17%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-------CCHH----HHHHHHHcC
Q 038230          241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-------FYSK----VASEAVGKG  309 (480)
Q Consensus       241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-------~~~~----v~~aaL~~G  309 (480)
                      ++-++-|||-+-+.   ..+|++  .+.+.++.+..++++-.+.    ++|+-+=+       ..++    .++-|.+.|
T Consensus       101 eeAvrlGAdAV~~~---v~~Gs~--~E~~~l~~l~~v~~ea~~~----G~Plla~~prG~~~~~~~~~ia~aaRiaaELG  171 (264)
T PRK08227        101 EDAVRLNACAVAAQ---VFIGSE--YEHQSIKNIIQLVDAGLRY----GMPVMAVTAVGKDMVRDARYFSLATRIAAEMG  171 (264)
T ss_pred             HHHHHCCCCEEEEE---EecCCH--HHHHHHHHHHHHHHHHHHh----CCcEEEEecCCCCcCchHHHHHHHHHHHHHHc
Confidence            34457899976664   334532  2344556666666666554    88877611       1222    345566679


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG  389 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg  389 (480)
                      ||+|---..   .+.+.++++...+|||+-   |=|++ ..              +.+.+.+..+.++|-.        |
T Consensus       172 ADiVK~~y~---~~~f~~vv~a~~vPVvia---GG~k~-~~--------------~~~L~~v~~ai~aGa~--------G  222 (264)
T PRK08227        172 AQIIKTYYV---EEGFERITAGCPVPIVIA---GGKKL-PE--------------RDALEMCYQAIDEGAS--------G  222 (264)
T ss_pred             CCEEecCCC---HHHHHHHHHcCCCcEEEe---CCCCC-CH--------------HHHHHHHHHHHHcCCc--------e
Confidence            999873221   146777777666777752   33432 11              2344566666677776        6


Q ss_pred             CCCccChhH
Q 038230          390 LGFSKKAEH  398 (480)
Q Consensus       390 iGf~k~~~~  398 (480)
                      +-+|.+..|
T Consensus       223 v~~GRNIfQ  231 (264)
T PRK08227        223 VDMGRNIFQ  231 (264)
T ss_pred             eeechhhhc
Confidence            666665443

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated

Probab=84.20  E-value=57  Score=34.29  Aligned_cols=178  Identities=15%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCCCC--CCCC----------CHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTRPM--ATKI----------SAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStrP~--a~~v----------~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      -|.+.+++-|+++.+.|+.       ++=+|++--|..  ....          +.++=+..+..++-.+.+.    ++|
T Consensus        64 ed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~~e~----Glp  139 (349)
T PRK09261         64 HDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDINEL----GLP  139 (349)
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHHHHh----CCC
Confidence            4788999999999999985       777777654432  2222          1244455555554444554    889


Q ss_pred             EEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCE----------------------------------
Q 038230          292 VSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPY----------------------------------  336 (480)
Q Consensus       292 ISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~v----------------------------------  336 (480)
                      +.-+-.+|...+...+. ++|+- |.+.+ ......+++...+.||                                  
T Consensus       140 vatE~ld~~~~~y~~dl-vs~~~-IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~  217 (349)
T PRK09261        140 AATEFLDPITPQYIADL-ISWGA-IGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGR  217 (349)
T ss_pred             eEEEecccccHHHHHhh-cceee-eccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCc
Confidence            87766666555555443 11111 11111 0122233333332222                                  


Q ss_pred             -EEEcCCCCCCcc------ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc--
Q 038230          337 -VAMHMRGDPSTM------QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL--  406 (480)
Q Consensus       337 -Vlmh~~g~p~~~------~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l--  406 (480)
                       ...++.|.|..-      ...++|.+        +.+......+.+.|+. ..|++||..|- .|+...-..+++.+  
T Consensus       218 ~~~i~t~GN~~~hlilRGg~~~pNy~~--------~~i~~~~~~l~k~~l~-~~v~VD~SH~ns~k~~~~Q~~V~~~v~~  288 (349)
T PRK09261        218 SAIVSTTGNPDCHVILRGGNKGPNYDA--------ESVAEAKERLEKAGLP-PRIMIDCSHANSGKDHKRQPEVARDVAA  288 (349)
T ss_pred             EEEEECCCCCCEEEEECCCCCCCCCCH--------HHHHHHHHHHHHcCCC-CCEEEECCCcccCcchhhhHHHHHHHHH
Confidence             223455655432      12344443        3345566666778884 68999999885 45554445544443  


Q ss_pred             -ccCCCcEEEeecccccc
Q 038230          407 -AASHAPILIGPSRKRFL  423 (480)
Q Consensus       407 -~~~g~Pil~G~SrKsfi  423 (480)
                       ..-|-.-+.|+==-||+
T Consensus       289 qi~~G~~~I~GvMiES~l  306 (349)
T PRK09261        289 QIAAGNKAIIGVMIESHL  306 (349)
T ss_pred             HHHcCCccceEEEEEEec
Confidence             12244445566555664

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=84.10  E-value=52  Score=33.49  Aligned_cols=192  Identities=16%  Similarity=0.198  Sum_probs=117.5

Q ss_pred             CCHHHHHHHHHHHH----HcCCCEEEeCC----CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230          231 QSVEAAVSQVRLMI----SEGADMIDIGA----QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV  301 (480)
Q Consensus       231 ~~~e~a~~~A~~~v----~~GAdiIDIG~----eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v  301 (480)
                      -+.|.+++.|+++.    +.|+.++==|+    .-|.|.+ .....++=++    +++.+++.   .++||--|-.+++-
T Consensus        27 Es~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~----iL~~vk~~---~GlpvvTeV~~~~~   99 (281)
T PRK12457         27 ESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLR----IFEEVKAR---FGVPVITDVHEVEQ   99 (281)
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHH----HHHHHHHH---HCCceEEEeCCHHH
Confidence            56788888888876    59998854432    2344532 2333234344    35666766   49999999999999


Q ss_pred             HHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          302 ASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                      ++.+.++ +|||- |-+.+- .-+++.-+++.+.+|.+  .+|.--++                +.....+++..+.|.+
T Consensus       100 ~~~~ae~-vDilQ-IgAr~~rntdLL~a~~~t~kpV~l--KrGqf~s~----------------~e~~~aae~i~~~Gn~  159 (281)
T PRK12457        100 AAPVAEV-ADVLQ-VPAFLARQTDLVVAIAKTGKPVNI--KKPQFMSP----------------TQMKHVVSKCREAGND  159 (281)
T ss_pred             HHHHhhh-CeEEe-eCchhhchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCCC
Confidence            9999999 89886 655431 24688888888876665  34422211                2234567777888986


Q ss_pred             CCCEEEec-CCCCccC--h--hHHHHHHHhcccCCCcEEEeeccc----cccccccCCCCcCcccHH-HHHHHHHHHHcC
Q 038230          381 AWRIIIDP-GLGFSKK--A--EHNLDILLGLAASHAPILIGPSRK----RFLGEICNRPSADERDPA-TIASITAGVLGG  450 (480)
Q Consensus       381 ~~~IilDP-giGf~k~--~--~~~~~~lr~l~~~g~Pil~G~SrK----sfi~~v~g~~~~~~r~~~-t~a~~~~a~~~G  450 (480)
                        +|++=- |+-|+-+  .  ...+.+++++ ..++|+++=.|..    +-.|..+    .-+|... .++-  .|+..|
T Consensus       160 --~vilcERG~~fgy~~~~~D~~~ip~mk~~-~t~lPVi~DpSHsvq~p~~~g~~s----~G~re~v~~lar--AAvA~G  230 (281)
T PRK12457        160 --RVILCERGSSFGYDNLVVDMLGFRQMKRT-TGDLPVIFDVTHSLQCRDPLGAAS----GGRRRQVLDLAR--AGMAVG  230 (281)
T ss_pred             --eEEEEeCCCCCCCCCcccchHHHHHHHhh-CCCCCEEEeCCccccCCCCCCCCC----CCCHHHHHHHHH--HHHHhC
Confidence              777654 7766332  1  2233444431 2499999977743    1111111    2345554 4433  445556


Q ss_pred             Cc--EEEcCC
Q 038230          451 AN--IVRVHN  458 (480)
Q Consensus       451 a~--IlRvHd  458 (480)
                      ||  ++-||.
T Consensus       231 aDGl~iEvHp  240 (281)
T PRK12457        231 LAGLFLEAHP  240 (281)
T ss_pred             CCEEEEEecC
Confidence            65  888897

>TIGR02317 prpB methylisocitrate lyase

Probab=83.98  E-value=3.5  Score=41.97  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230          216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA  255 (480)
Q Consensus       216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~  255 (480)
                      +||.-=|+|..+|    .|++++|++.+.++|||.|=+-+
T Consensus       147 ~IiARTDa~~~~g----~deAI~Ra~ay~~AGAD~vfi~g  182 (285)
T TIGR02317       147 VIIARTDARAVEG----LDAAIERAKAYVEAGADMIFPEA  182 (285)
T ss_pred             EEEEEcCcccccC----HHHHHHHHHHHHHcCCCEEEeCC
Confidence            6777889997654    79999999999999999999854

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=83.93  E-value=33  Score=33.53  Aligned_cols=90  Identities=23%  Similarity=0.350  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd  315 (480)
                      -++...++.++||+||-+-+ ..||-..     +.++.+   ++..+.    .+..++=|....+....|.++|+|+|-.
T Consensus        87 tlkeVd~L~~~Ga~IIA~Da-T~R~RP~-----~~~~~~---i~~~k~----~~~l~MAD~St~ee~l~a~~~G~D~IGT  153 (229)
T COG3010          87 TLKEVDALAEAGADIIAFDA-TDRPRPD-----GDLEEL---IARIKY----PGQLAMADCSTFEEGLNAHKLGFDIIGT  153 (229)
T ss_pred             cHHHHHHHHHCCCcEEEeec-ccCCCCc-----chHHHH---HHHhhc----CCcEEEeccCCHHHHHHHHHcCCcEEec
Confidence            56778899999999999987 3454321     123333   333332    5889999999999999999999999975


Q ss_pred             CCCC-CC------Cc--hHHHHHHhcCCCEEE
Q 038230          316 VSAG-QL------DP--DMYKVVAGLKVPYVA  338 (480)
Q Consensus       316 Vsg~-~~------d~--~m~~l~~~~~~~vVl  338 (480)
                      .-.+ +.      +|  .+++-+.+.|+.||.
T Consensus       154 TLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIA  185 (229)
T COG3010         154 TLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIA  185 (229)
T ss_pred             ccccccCCCCCCCCCcHHHHHHHHhCCCeEEe
Confidence            4221 11      12  355555668888886

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=83.90  E-value=5.2  Score=41.76  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeC-CC
Q 038230          221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDT-FY  298 (480)
Q Consensus       221 pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT-~~  298 (480)
                      ++-+.+||  .+.++.++.++.+.+.|+|+|+|.+.+..+....... .-+    +.++.+++... .++||. +-. ++
T Consensus       224 ~~~~~~~g--~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~-~~~----~~~~~ik~~~~-~~iPVi~~Ggi~t  295 (353)
T cd04735         224 PEEPEEPG--IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD-DNQ----TIMELVKERIA-GRLPLIAVGSINT  295 (353)
T ss_pred             cccccCCC--CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc-chH----HHHHHHHHHhC-CCCCEEEECCCCC
Confidence            44455565  4678999999999999999999976321111000110 011    12222222210 144544 434 47


Q ss_pred             HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHh
Q 038230          299 SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       299 ~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      ++.++++++.|+|+|---.+...+|.+..-+++
T Consensus       296 ~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~~  328 (353)
T cd04735         296 PDDALEALETGADLVAIGRGLLVDPDWVEKIKE  328 (353)
T ss_pred             HHHHHHHHHcCCChHHHhHHHHhCccHHHHHHc
Confidence            999999999998887655554456777766655

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=83.82  E-value=18  Score=38.03  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=45.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASE  304 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~a  304 (480)
                      .++.|++++.|++..+.|+.-+-+-+. ..|..      .+++++..+++.+++..    .-+.|..+.+..+..
T Consensus        90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G-~~p~~------~~~e~~~~~i~~ik~~~----~~i~i~a~s~~ei~~  153 (371)
T PRK07360         90 WLTIAEILEKAAEAVKRGATEVCIQGG-LHPAA------DSLEFYLEILEAIKEEF----PDIHLHAFSPMEVYF  153 (371)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEccC-CCCCC------CcHHHHHHHHHHHHHhC----CCcceeeCCHHHHHH
Confidence            379999999999999999999988742 34432      25677777888888642    126677666655443

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=83.79  E-value=4.2  Score=42.39  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQ----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASE  304 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~e----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~a  304 (480)
                      .+.+++++.++.+.+.|+|+|+|...    .+.+..... ...   ...+..+.+++.   .++||...  -+.++.+++
T Consensus       221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~-~~~---~~~~~~~~ik~~---v~iPVi~~G~i~~~~~a~~  293 (353)
T cd02930         221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSV-PRG---AFAWATAKLKRA---VDIPVIASNRINTPEVAER  293 (353)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccC-Cch---hhHHHHHHHHHh---CCCCEEEcCCCCCHHHHHH
Confidence            57899999999999999999999432    111110001 111   123345566665   37777764  458999999


Q ss_pred             HHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230          305 AVGKG-AHIVNDVSAGQLDPDMYKVVAGL  332 (480)
Q Consensus       305 aL~~G-~~iINdVsg~~~d~~m~~l~~~~  332 (480)
                      +++.| +|+|---.+.-.||.+..-+++-
T Consensus       294 ~i~~g~~D~V~~gR~~l~dP~~~~k~~~g  322 (353)
T cd02930         294 LLADGDADMVSMARPFLADPDFVAKAAAG  322 (353)
T ss_pred             HHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence            99986 88887555555578887777664

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=83.74  E-value=1.9  Score=42.16  Aligned_cols=149  Identities=19%  Similarity=0.244  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCC
Q 038230          236 AVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGA  310 (480)
Q Consensus       236 a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~  310 (480)
                      -++.|+.+.+.||+   ++|+.+..  .+         ...-..+|+.+.+.   ..+||.+|-  ++.+.+++.++.|+
T Consensus        31 P~~~a~~~~~~g~~~l~ivDLdaa~--~g---------~~~n~~~i~~i~~~---~~~~i~vgGGIrs~ed~~~ll~~Ga   96 (229)
T PF00977_consen   31 PVEVAKAFNEQGADELHIVDLDAAK--EG---------RGSNLELIKEIAKE---TGIPIQVGGGIRSIEDAERLLDAGA   96 (229)
T ss_dssp             HHHHHHHHHHTT-SEEEEEEHHHHC--CT---------HHHHHHHHHHHHHH---SSSEEEEESSE-SHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHcCCCEEEEEEccCcc--cC---------chhHHHHHHHHHhc---CCccEEEeCccCcHHHHHHHHHhCC
Confidence            45678888899997   89998632  11         11223566676665   478999985  78999999999998


Q ss_pred             C--EEecCCCCCCCch-HHHHHHhcCC-CEEEE-cC-CC-CCCcc--ccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          311 H--IVNDVSAGQLDPD-MYKVVAGLKV-PYVAM-HM-RG-DPSTM--QNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       311 ~--iINdVsg~~~d~~-m~~l~~~~~~-~vVlm-h~-~g-~p~~~--~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      +  +|++.. .+ +++ +-+++++||. .+|+. .. .| ...+-  ++...           ..+.+.++++.+.|+. 
T Consensus        97 ~~Vvigt~~-~~-~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~-----------~~~~~~~~~~~~~g~~-  162 (229)
T PF00977_consen   97 DRVVIGTEA-LE-DPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSG-----------IDLEEFAKRLEELGAG-  162 (229)
T ss_dssp             SEEEESHHH-HH-CCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEE-----------EEHHHHHHHHHHTT-S-
T ss_pred             CEEEeChHH-hh-chhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCC-----------cCHHHHHHHHHhcCCc-
Confidence            7  566554 23 444 5667777887 55543 22 23 11000  00000           1235667778889986 


Q ss_pred             CCEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          382 WRIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       382 ~~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      +=|+.|-   |.+.|-    ++++++++ ...+.|++.|
T Consensus       163 ~ii~tdi~~dGt~~G~----d~~~~~~l~~~~~~~vias  197 (229)
T PF00977_consen  163 EIILTDIDRDGTMQGP----DLELLKQLAEAVNIPVIAS  197 (229)
T ss_dssp             EEEEEETTTTTTSSS------HHHHHHHHHHHSSEEEEE
T ss_pred             EEEEeeccccCCcCCC----CHHHHHHHHHHcCCCEEEe
Confidence            2356665   443443    35667766 3458999874

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=83.67  E-value=18  Score=36.90  Aligned_cols=109  Identities=8%  Similarity=0.114  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCC
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~  342 (480)
                      ..+++..++..   -...+++.++.+.+++.+++    +.++|-.++.....    +    -+..+++++++||++--+.
T Consensus         7 k~iL~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH   83 (286)
T PRK12738          7 KYLLQDAQANG---YAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH   83 (286)
T ss_pred             HHHHHHHHHCC---ceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            34455555541   35689999999999888885    89998877654321    2    2445567899999984444


Q ss_pred             CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230          343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI  413 (480)
Q Consensus       343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi  413 (480)
                      |..                      .+.+.+|.++|++  .|-+|   |-.-..++|++.-|++    +..|+.+
T Consensus        84 g~~----------------------~e~i~~ai~~GFt--SVM~D---gS~lp~eeNi~~T~evv~~Ah~~gv~V  131 (286)
T PRK12738         84 HES----------------------LDDIRRKVHAGVR--SAMID---GSHFPFAENVKLVKSVVDFCHSQDCSV  131 (286)
T ss_pred             CCC----------------------HHHHHHHHHcCCC--eEeec---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence            321                      1455667788997  89999   4455678888887776    3446655

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=83.49  E-value=7.5  Score=40.44  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             EEEEecCCCCCCCCCc-cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          214 MGILNLTPDSFSDGGK-FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       214 mGIlN~tpDSFsdgg~-~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      +|+ =++++.+..|+. -.+.++.++.++.+.+.|+|+|+|...++.+...        ....+.++.+++.   .++||
T Consensus       221 v~v-Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~--------~~~~~~~~~ik~~---~~ipv  288 (338)
T cd02933         221 VGI-RLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPE--------DQPPDFLDFLRKA---FKGPL  288 (338)
T ss_pred             eEE-EECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCccc--------ccchHHHHHHHHH---cCCCE
Confidence            554 234443433332 2578999999999999999999994323322110        1122334445554   24554


Q ss_pred             -EEeCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          293 -SVDTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       293 -SIDT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                       ..--.+++.++++++.| +|+|---.+.-.||.+..-+++
T Consensus       289 i~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~  329 (338)
T cd02933         289 IAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLKN  329 (338)
T ss_pred             EEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence             33444599999999985 8888755555456776655544

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=83.42  E-value=55  Score=33.29  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc-CCCCeEEEeCCCHHH-HHH
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE-MEGKLVSVDTFYSKV-ASE  304 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~-~~~~pISIDT~~~~v-~~a  304 (480)
                      .|.+++.++=++.|+.+.+.|.+.|++|.    |..    .++|.+.+    +.|.+... ..+..++.=+....- ++.
T Consensus        16 ~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf----P~~----~~~e~e~~----~~i~~~~~~~~~~~~~al~r~~~~die~   83 (284)
T cd07942          16 LAEPMSVEQKLRFFKLLVKIGFKEIEVGF----PSA----SQTDFDFV----RELIEEDLIPDDVTIQVLTQAREDLIER   83 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHHHHHHH----HHHHHccCCCCCCEEEEEcCCChhhHHH
Confidence            35678899999999999999999999995    432    23443333    33322100 024556666666555 889


Q ss_pred             HHHc--CCC
Q 038230          305 AVGK--GAH  311 (480)
Q Consensus       305 aL~~--G~~  311 (480)
                      |+++  |++
T Consensus        84 a~~~~~~~~   92 (284)
T cd07942          84 TFEALRGAK   92 (284)
T ss_pred             HHHHhCCCC
Confidence            9987  554

Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=83.33  E-value=4.7  Score=39.79  Aligned_cols=59  Identities=27%  Similarity=0.349  Sum_probs=39.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT  296 (480)
                      +.+++++++.|+.. ++++|+||||+.-.-|       |+...   .+.+++..+++.+++.    ++||++=.
T Consensus        76 ~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll---~dp~~l~~iv~av~~~----~~PVsvKi  141 (231)
T TIGR00736        76 FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELL---KNKELLKEFLTKMKEL----NKPIFVKI  141 (231)
T ss_pred             cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhc---CCHHHHHHHHHHHHcC----CCcEEEEe
Confidence            36788888887775 7799999999743222       22222   2455777788888843    67887743

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=83.32  E-value=15  Score=35.60  Aligned_cols=87  Identities=18%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230          238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS  317 (480)
Q Consensus       238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs  317 (480)
                      +.+++.+++||++| |.     |+..     .      .+++..++.    ++|..--...|..+..|+++|++++-=.-
T Consensus        71 ~~a~~a~~aGA~Fi-vs-----P~~~-----~------~v~~~~~~~----~i~~iPG~~TptEi~~A~~~Ga~~vKlFP  129 (204)
T TIGR01182        71 EQLRQAVDAGAQFI-VS-----PGLT-----P------ELAKHAQDH----GIPIIPGVATPSEIMLALELGITALKLFP  129 (204)
T ss_pred             HHHHHHHHcCCCEE-EC-----CCCC-----H------HHHHHHHHc----CCcEECCCCCHHHHHHHHHCCCCEEEECC
Confidence            35788899999999 32     5532     1      345555554    88888899999999999999999997554


Q ss_pred             CCCCC-chHHHHHHhcCCCEEEEcCCCCC
Q 038230          318 AGQLD-PDMYKVVAGLKVPYVAMHMRGDP  345 (480)
Q Consensus       318 g~~~d-~~m~~l~~~~~~~vVlmh~~g~p  345 (480)
                      +...- +.+++-++.-=-.+=+|+..|..
T Consensus       130 A~~~GG~~yikal~~plp~i~~~ptGGV~  158 (204)
T TIGR01182       130 AEVSGGVKMLKALAGPFPQVRFCPTGGIN  158 (204)
T ss_pred             chhcCCHHHHHHHhccCCCCcEEecCCCC
Confidence            43222 45554444321234466777764

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd00945 Aldolase_Class_I Class I aldolases

Probab=83.29  E-value=21  Score=32.80  Aligned_cols=102  Identities=20%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----CHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----YSKVASE  304 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----~~~v~~a  304 (480)
                      ...+++++.+++..+.|||.+.+-...    .-..+ .+++   +...++.+.+.. ..++|+.+...     .++.+.+
T Consensus        62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~----~~~~~~~~~~---~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~  133 (201)
T cd00945          62 TTTEVKVAEVEEAIDLGADEIDVVINI----GSLKEGDWEE---VLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAK  133 (201)
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEeccH----HHHhCCCHHH---HHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHH
Confidence            446899999999999999999996421    11111 0122   223333333321 02788887655     6777665


Q ss_pred             H----HHcCCCEEecCCCCC---CC-chHHHHHHhc--CCCEEEEc
Q 038230          305 A----VGKGAHIVNDVSAGQ---LD-PDMYKVVAGL--KVPYVAMH  340 (480)
Q Consensus       305 a----L~~G~~iINdVsg~~---~d-~~m~~l~~~~--~~~vVlmh  340 (480)
                      .    -+.|++.|-+-++..   .+ +.+..+.+..  +.++++..
T Consensus       134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g  179 (201)
T cd00945         134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG  179 (201)
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence            4    346999998766521   12 4455555554  45666543

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=83.22  E-value=12  Score=38.61  Aligned_cols=86  Identities=14%  Similarity=0.027  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTR-----PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--------  297 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr-----P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--------  297 (480)
                      .+++...+.|+...+.|+|.||||+.=.-     .|. .-.-..+.+++..+++++++... .++|||+=++        
T Consensus        72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~-~~~pVsvKiR~g~~~~~~  149 (312)
T PRK10550         72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVP-AHLPVTVKVRLGWDSGER  149 (312)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcC-CCcceEEEEECCCCCchH
Confidence            45677777888888899999999963211     111 11123567788888888887531 1477776422        


Q ss_pred             CHHHHHHHHHcCCCEEecCCCC
Q 038230          298 YSKVASEAVGKGAHIVNDVSAG  319 (480)
Q Consensus       298 ~~~v~~aaL~~G~~iINdVsg~  319 (480)
                      ..+.++.+-++|++.|. |.+.
T Consensus       150 ~~~~a~~l~~~Gvd~i~-Vh~R  170 (312)
T PRK10550        150 KFEIADAVQQAGATELV-VHGR  170 (312)
T ss_pred             HHHHHHHHHhcCCCEEE-ECCC
Confidence            12444555556888886 6553

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=82.94  E-value=48  Score=32.86  Aligned_cols=138  Identities=21%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      .+.++-.+|-   +|.-|... +.+..+..+++.++.||+.|++-.-   .+.  -+..+.++.+..+.+..++    .+
T Consensus        70 ~~~~~~~~~~---~~~~g~~~-~~~~~~~~v~~al~~Ga~~v~~~~~---~g~--~~~~~~~~~~~~i~~~~~~----~g  136 (258)
T TIGR01949        70 DVGLIIHLSA---STSLSPDP-NDKRIVTTVEDAIRMGADAVSIHVN---VGS--DTEWEQIRDLGMIAEICDD----WG  136 (258)
T ss_pred             CCcEEEEEcC---CCCCCCCC-CcceeeeeHHHHHHCCCCEEEEEEe---cCC--chHHHHHHHHHHHHHHHHH----cC
Confidence            3445556652   34443221 1123455688899999999999642   111  1122333333333333333    37


Q ss_pred             CeEEEeCC---------CHHH----HHHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCCCC-cccccccc
Q 038230          290 KLVSVDTF---------YSKV----ASEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENL  354 (480)
Q Consensus       290 ~pISIDT~---------~~~v----~~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~  354 (480)
                      +|+-|+.+         .++.    ++.|.+.|+|+|-- + ...+ +.+-.+++...+||++.  .|+-. +       
T Consensus       137 ~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt-~-~~~~~~~l~~~~~~~~iPVva~--GGi~~~~-------  205 (258)
T TIGR01949       137 VPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKT-P-YTGDIDSFRDVVKGCPAPVVVA--GGPKTNS-------  205 (258)
T ss_pred             CCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEec-c-CCCCHHHHHHHHHhCCCcEEEe--cCCCCCC-------
Confidence            77777433         2223    34556679998873 3 2223 34445555567888763  34321 1       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                               .+.+.+.++.+.++|..
T Consensus       206 ---------~~~~~~~i~~~~~aGa~  222 (258)
T TIGR01949       206 ---------DREFLQMIKDAMEAGAA  222 (258)
T ss_pred             ---------HHHHHHHHHHHHHcCCc
Confidence                     13345666677778875

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []

Probab=82.88  E-value=5.2  Score=41.05  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCC-CCeEEEeCCCHHHHHHHHHc
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEME-GKLVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~-~~pISIDT~~~~v~~aaL~~  308 (480)
                      +..++.++.++++|||+|=++-    .....+|++.=-+-+.|    +++.+++..  . .+.+=+|-.....+..-.+.
T Consensus       182 ~~~~~~~~~~~~~G~d~i~~~d----~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~cG~~~~~~~~l~~~  255 (343)
T PF01208_consen  182 DFIIEYAKAQIEAGADGIFIFD----SSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHICGNTTPILDDLADL  255 (343)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEE----TTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEETTHG-GGHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCcccccc----cccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEECCchHHHHHHHHhc
Confidence            3455778899999999998875    23457777654444444    444444431  1 23455666666688888888


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCC-CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDP-STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID  387 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p-~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD  387 (480)
                      |+++++ +..   ...+.+.+++++-.+++|-.- .| ..+.        .--+++.+..++.++..   .-...+.|+-
T Consensus       256 g~d~~~-~~~---~~~~~~~~~~~~~~~~l~Gni-~~~~~l~--------gt~eei~~~v~~~i~~~---~~~~~gfIl~  319 (343)
T PF01208_consen  256 GADVLS-VDE---KVDLAEAKRKLGDKIVLMGNI-DPVSLLF--------GTPEEIEEEVKRLIEEG---LAGGGGFILS  319 (343)
T ss_dssp             S-SEEE-E-T---TS-HHHHHHHHTTSSEEEEEB--G-GGGG--------S-HHHHHHHHHHHHHHT---HCTSSSEEBE
T ss_pred             CCCEEE-EcC---CCCHHHHHHHhCCCeEEECCC-Ccccccc--------CCHHHHHHHHHHHHHHh---cCCCCCEEEe
Confidence            999988 321   245678888888777776542 12 2222        11233333334444421   1123478999


Q ss_pred             cCCCCc-cChhHHHHHHH
Q 038230          388 PGLGFS-KKAEHNLDILL  404 (480)
Q Consensus       388 PgiGf~-k~~~~~~~~lr  404 (480)
                      ||-+.. .+..+|++.+-
T Consensus       320 ~gc~ip~~~p~eni~a~~  337 (343)
T PF01208_consen  320 PGCGIPPDTPPENIKAMV  337 (343)
T ss_dssp             BSS---TTS-HHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHH
Confidence            998864 44567766543

URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=82.81  E-value=24  Score=36.08  Aligned_cols=103  Identities=22%  Similarity=0.259  Sum_probs=65.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQS------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~  299 (480)
                      |.++..+.+.++++.+.||.-|=|==+.      ..++...++.++-.+++.-++++-.      +..+.|    |++-.
T Consensus        89 yG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~------~~d~~IiARTDa~~~  162 (292)
T PRK11320         89 FGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART------DPDFVIMARTDALAV  162 (292)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc------CCCeEEEEecCcccc
Confidence            3488889999999999999777663111      1123445777766666654443322      233444    77643


Q ss_pred             HHHHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          300 KVASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       300 ~v~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                      .-+++|++       +|||+|- +-+.+..+++..++++.++|+++.
T Consensus       163 ~g~deAI~Ra~aY~eAGAD~if-i~~~~~~~~i~~~~~~~~~Pl~~n  208 (292)
T PRK11320        163 EGLDAAIERAQAYVEAGADMIF-PEAMTELEMYRRFADAVKVPILAN  208 (292)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHHHHHHhcCCCEEEE
Confidence            33334433       5999998 555553477888888889998653

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=82.53  E-value=18  Score=35.28  Aligned_cols=155  Identities=12%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHcCCCEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCC
Q 038230          236 AVSQVRLMISEGADMI---DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGA  310 (480)
Q Consensus       236 a~~~A~~~v~~GAdiI---DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~  310 (480)
                      .++.|+.+.+.|++.|   |..+..           ++.......|+.+.+.   .++|+.|+  -.+.+-++.++++|+
T Consensus        34 ~~e~a~~~~~~G~~~l~i~dl~~~~-----------~~~~~~~~~i~~i~~~---~~~~l~v~GGi~~~~~~~~~~~~Ga   99 (241)
T PRK13585         34 PVEVAKRWVDAGAETLHLVDLDGAF-----------EGERKNAEAIEKIIEA---VGVPVQLGGGIRSAEDAASLLDLGV   99 (241)
T ss_pred             HHHHHHHHHHcCCCEEEEEechhhh-----------cCCcccHHHHHHHHHH---cCCcEEEcCCcCCHHHHHHHHHcCC
Confidence            5667888889998655   554311           1111222334455554   37899995  467788999999999


Q ss_pred             CEEecCCCCCCCc-hHHHHHHhcCC-CEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230          311 HIVNDVSAGQLDP-DMYKVVAGLKV-PYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID  387 (480)
Q Consensus       311 ~iINdVsg~~~d~-~m~~l~~~~~~-~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD  387 (480)
                      +-+-==+....++ .+.+++..++- .+++ +...+.+.......    ++.    .....+.+..+.+.|+.  .|++=
T Consensus       100 ~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~----~~~----~~~~~~~~~~~~~~G~~--~i~~~  169 (241)
T PRK13585        100 DRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWT----EKT----GYTPVEAAKRFEELGAG--SILFT  169 (241)
T ss_pred             CEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCc----ccC----CCCHHHHHHHHHHcCCC--EEEEE
Confidence            8553111111234 35666677753 2322 22111111110000    000    00123455566788987  56652


Q ss_pred             cC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          388 PG--LGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       388 Pg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      .-  -|..+  ..++++++++ +....|++.+
T Consensus       170 ~~~~~g~~~--g~~~~~i~~i~~~~~iPvia~  199 (241)
T PRK13585        170 NVDVEGLLE--GVNTEPVKELVDSVDIPVIAS  199 (241)
T ss_pred             eecCCCCcC--CCCHHHHHHHHHhCCCCEEEe
Confidence            21  12211  1357777777 4568998875

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=82.38  E-value=14  Score=36.44  Aligned_cols=99  Identities=23%  Similarity=0.301  Sum_probs=58.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC------
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF------  297 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~------  297 (480)
                      .++++..+.|+.. ++++++||||+.-..|       |+...   .+.+++..+++++++.    ++|||+=.+      
T Consensus        82 ~~~~~~~~aa~~~-~~~~~~ielN~gCP~~~v~~~g~G~~Ll---~~p~~l~eiv~avr~~----~~pVsvKir~g~~~~  153 (233)
T cd02911          82 SSLEPLLNAAALV-AKNAAILEINAHCRQPEMVEAGAGEALL---KDPERLSEFIKALKET----GVPVSVKIRAGVDVD  153 (233)
T ss_pred             CCHHHHHHHHHHH-hhcCCEEEEECCCCcHHHhcCCcchHHc---CCHHHHHHHHHHHHhc----CCCEEEEEcCCcCcC
Confidence            4677777777766 4467999999742222       22111   2356777888888864    788887332      


Q ss_pred             CHHHHHHHHHcCCCEEecCCCCCCC-chHHHHHHhc--CCCEEE
Q 038230          298 YSKVASEAVGKGAHIVNDVSAGQLD-PDMYKVVAGL--KVPYVA  338 (480)
Q Consensus       298 ~~~v~~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~--~~~vVl  338 (480)
                      ..+.++.+.++|+++|. ++..... ..-.+.+++.  +.+||.
T Consensus       154 ~~~la~~l~~aG~d~ih-v~~~~~g~~ad~~~I~~i~~~ipVIg  196 (233)
T cd02911         154 DEELARLIEKAGADIIH-VDAMDPGNHADLKKIRDISTELFIIG  196 (233)
T ss_pred             HHHHHHHHHHhCCCEEE-ECcCCCCCCCcHHHHHHhcCCCEEEE
Confidence            23455566677999875 4432211 1123444443  566664

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=82.27  E-value=23  Score=33.38  Aligned_cols=86  Identities=22%  Similarity=0.160  Sum_probs=53.7

Q ss_pred             HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230          238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS  317 (480)
Q Consensus       238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs  317 (480)
                      +++...++.||+.|=.++.      .     .      ++++..+..    +.++-+.-.+++.+.+|+++|+|+|.=..
T Consensus        67 ~~~~~a~~~Ga~~i~~p~~------~-----~------~~~~~~~~~----~~~~i~gv~t~~e~~~A~~~Gad~i~~~p  125 (190)
T cd00452          67 EQADAAIAAGAQFIVSPGL------D-----P------EVVKAANRA----GIPLLPGVATPTEIMQALELGADIVKLFP  125 (190)
T ss_pred             HHHHHHHHcCCCEEEcCCC------C-----H------HHHHHHHHc----CCcEECCcCCHHHHHHHHHCCCCEEEEcC
Confidence            3667778899999965431      1     1      234444443    66777888899999999999999998432


Q ss_pred             CCCCCchHHHHHHhcCCCEEEEcCCCC
Q 038230          318 AGQLDPDMYKVVAGLKVPYVAMHMRGD  344 (480)
Q Consensus       318 g~~~d~~m~~l~~~~~~~vVlmh~~g~  344 (480)
                      ....-.+.++.++..--.+-++...|+
T Consensus       126 ~~~~g~~~~~~l~~~~~~~p~~a~GGI  152 (190)
T cd00452         126 AEAVGPAYIKALKGPFPQVRFMPTGGV  152 (190)
T ss_pred             CcccCHHHHHHHHhhCCCCeEEEeCCC
Confidence            222124556665543212334455565

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK01060 endonuclease IV; Provisional

Probab=82.16  E-value=54  Score=32.43  Aligned_cols=138  Identities=16%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe---EEE--------eCCCHHH
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL---VSV--------DTFYSKV  301 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p---ISI--------DT~~~~v  301 (480)
                      .++++   +...+.|.|-+++-..+.......-..+++++.++..+   .+.    ++.   +++        -+.++++
T Consensus        14 ~~~~l---~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~---~~~----gl~~~~~~~h~~~~~nl~~~d~~~   83 (281)
T PRK01060         14 LEGAV---AEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC---EKY----GISPEDILVHAPYLINLGNPNKEI   83 (281)
T ss_pred             HHHHH---HHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH---HHc----CCCCCceEEecceEecCCCCCHHH
Confidence            44444   55567899999997654221111112345566555444   332    333   332        2334444


Q ss_pred             HHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHH--HHCCC
Q 038230          302 ASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDA--ELSGI  379 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a--~~~Gi  379 (480)
                      .+++++.             -.+.+++|++.||++|++|....+...      ..++..    +.+.+.++.+  ...|+
T Consensus        84 r~~s~~~-------------~~~~i~~A~~lga~~vv~h~G~~~~~~------~~~~~~----~~~~e~l~~l~~~~~gv  140 (281)
T PRK01060         84 LEKSRDF-------------LIQEIERCAALGAKLLVFHPGSHLGDI------DEEDCL----ARIAESLNEALDKTQGV  140 (281)
T ss_pred             HHHHHHH-------------HHHHHHHHHHcCCCEEEEcCCcCCCCC------cHHHHH----HHHHHHHHHHHhcCCCC
Confidence            4444311             135678889999999988864322110      011122    3333333333  34677


Q ss_pred             CCCCEEEecCCCC----ccChhHHHHHHHhc
Q 038230          380 PAWRIIIDPGLGF----SKKAEHNLDILLGL  406 (480)
Q Consensus       380 ~~~~IilDPgiGf----~k~~~~~~~~lr~l  406 (480)
                         +|.+-|.-++    +.+.++-.++++.+
T Consensus       141 ---~l~iEn~~~~~~~~~~~~~~~~~l~~~v  168 (281)
T PRK01060        141 ---TIVLENTAGQGSELGRRFEELARIIDGV  168 (281)
T ss_pred             ---EEEEecCCCCCCcccCCHHHHHHHHHhc
Confidence               4888885443    34555556666655

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]

Probab=82.13  E-value=15  Score=37.17  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER  273 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r  273 (480)
                      ..+++.|.+++++| .+.-|| ++.||.. +||. +.|+.
T Consensus       107 ~~~lelA~k~v~eg-~avaiG-EvGrPHy-pVs~-~v~~~  142 (285)
T COG1831         107 RHALELAAKLVEEG-KAVAIG-EVGRPHY-PVSE-EVWEA  142 (285)
T ss_pred             HHHHHHHHHHHhcc-ceeeee-ccCCCCC-CCCH-HHHHH
Confidence            46778899999999 666666 8999975 4553 44543

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=81.78  E-value=56  Score=32.20  Aligned_cols=165  Identities=10%  Similarity=0.071  Sum_probs=89.6

Q ss_pred             ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038230          200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE  279 (480)
Q Consensus       200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~  279 (480)
                      +++..++- .+|+|...|  +.         .+.++++.+++.....|||++.+=...-..        .+...+..+++
T Consensus        11 v~~~~~g~-~~p~Icvpi--~~---------~~~ee~~~~~~~~~~~~aDivE~RlD~l~~--------~~~~~~~~~~~   70 (229)
T PRK01261         11 IGKFVIGN-MQPIVVESI--FF---------KDIKEMKERFKTKVLSDKNLYEIRFDLFHD--------HSIESEPEIIS   70 (229)
T ss_pred             EeCeEeCC-CCcEEEEEe--CC---------CCHHHHHHHHHHhhcCCCCEEEEEeeccCC--------CChHHHHHHHH
Confidence            34444433 467775543  43         578999999999999999998876532221        11222334444


Q ss_pred             HHHcCCcCCCCeEEEeCC-CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhh
Q 038230          280 AVLTMPEMEGKLVSVDTF-YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDD  358 (480)
Q Consensus       280 ~l~~~~~~~~~pISIDT~-~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~  358 (480)
                      .+++..  ..+.+.+=+- +.+..+++++.+++++ ||--.. ..++  .+++.++.+|+.+-  +|.            
T Consensus        71 ~l~~~~--~p~I~T~R~~~~~~~l~~a~~~~~d~v-DIEl~~-~~~~--~~~~~~~kvIvS~H--tp~------------  130 (229)
T PRK01261         71 ALNEMD--IDYIFTYRGVDARKYYETAIDKMPPAV-DLDINL-IGKL--EFRPRNTMLMVSYH--TNN------------  130 (229)
T ss_pred             HHhhcC--CCEEEEEcCCCHHHHHHHHHhhCCCEE-EEEccc-chhh--hhhcCCCeEEEEeC--CCC------------
Confidence            454320  1233333221 2456677777678886 464321 1222  23567888888643  331            


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230          359 VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL  414 (480)
Q Consensus       359 v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil  414 (480)
                           .+.+.++++.+.+.|-+--+|..=|     ++..+.+..+..+    +..+.|++
T Consensus       131 -----~eeL~~~l~~m~~~gaDI~KiAvmp-----~~~~Dvl~~l~~~~~~~~~~~~p~i  180 (229)
T PRK01261        131 -----SDNMPAILDIMNEKNPDYVKVACNY-----NDNKKFVDDLQYILMKKDEKYKPIV  180 (229)
T ss_pred             -----HHHHHHHHHHHHHhCCCEEEEEeCC-----CChHHHHHHHHHHHHHHhcCCCCEE
Confidence                 1345577777777774323666633     4444445444332    34567753

>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional

Probab=81.77  E-value=67  Score=33.15  Aligned_cols=123  Identities=14%  Similarity=0.055  Sum_probs=68.8

Q ss_pred             CCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHHHHHcCCCEEecCCCCCC
Q 038230          247 GADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASEAVGKGAHIVNDVSAGQL  321 (480)
Q Consensus       247 GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~aaL~~G~~iINdVsg~~~  321 (480)
                      |+++|=|=-.+- .   ... .++++++...+++.+.+..   +.++.+=|+.    .......++..++.|. +.--..
T Consensus       173 G~~~IQiDEP~L~~---~~~-~~~~~~~~~~a~~~~~~~~---~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~-ld~~~~  244 (326)
T PRK08575        173 VVDAVEIHEPSIFA---KGI-KRDTLEKLPEVYKTMAKNV---NIEKHLMTYFEINNLKRLDILFSLPVTYFG-IDVIEN  244 (326)
T ss_pred             CCCEEEecCcceeC---CCC-CHHHHHHHHHHHHHHHhcC---CCCEEEECCCCCccccHHHHHhcCCCcEEE-EEecCC
Confidence            999998864221 1   111 2356788888898887652   5678888872    2467777777777664 211111


Q ss_pred             CchHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCc
Q 038230          322 DPDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFS  393 (480)
Q Consensus       322 d~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~  393 (480)
                      .+. +..+.++  +-.+.+=-.+|....++.         .    +...++++++.+  +++++++++|-.|+.
T Consensus       245 ~~~-l~~~~~~~~~k~l~~GviD~rn~~vE~---------~----eev~~~i~~~~~--~~~~~l~v~pdcgl~  302 (326)
T PRK08575        245 LKK-LGRVYTYLKGRKVYLGILNARNTKMEK---------I----STIRRIVNKVKR--KGVSDIIVGNNTLFD  302 (326)
T ss_pred             hhH-HHHHHhhCCCCEEEEEEEeCCCCCCCC---------H----HHHHHHHHHHHh--cCCCeEEEeCCCCcc
Confidence            223 3333442  211221111221112211         2    445678888877  678899999976653

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=81.60  E-value=4.7  Score=41.87  Aligned_cols=124  Identities=21%  Similarity=0.296  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH------HHHHHHHHcCCcCCCCeEEEeCCCH---------
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL------IPVLEAVLTMPEMEGKLVSVDTFYS---------  299 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl------~~vi~~l~~~~~~~~~pISIDT~~~---------  299 (480)
                      .+++.|-.+...|||-+-||.       +.|...|+.-..      ..-|+.|.+.....-+.||||-.+-         
T Consensus       337 palEVA~~YFRSGADKvSIGs-------DAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk  409 (541)
T KOG0623|consen  337 PALEVAAEYFRSGADKVSIGS-------DAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTK  409 (541)
T ss_pred             hhHHHHHHHHhcCCceeeech-------hHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCc
Confidence            588999999999999999993       223333332211      0123333332111257788875321         


Q ss_pred             -----------------------------------HHH--HHHHHcCCCEEecCCC----CCCCchHHHHHHhc-CCCEE
Q 038230          300 -----------------------------------KVA--SEAVGKGAHIVNDVSA----GQLDPDMYKVVAGL-KVPYV  337 (480)
Q Consensus       300 -----------------------------------~v~--~aaL~~G~~iINdVsg----~~~d~~m~~l~~~~-~~~vV  337 (480)
                                                         |..  -+||.+|--++|=+..    .-+|-++.+++++. ++|||
T Consensus       410 ~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieLv~lvkdsV~IPVI  489 (541)
T KOG0623|consen  410 YKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNKGYDIELVKLVKDSVGIPVI  489 (541)
T ss_pred             ceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCCCcchhHHHHhhcccCCceE
Confidence                                               222  2344456667775543    22457899999985 78998


Q ss_pred             EEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230          338 AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI  379 (480)
Q Consensus       338 lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi  379 (480)
                      ...--|+|+..+            |  .|.+...+.|..+||
T Consensus       490 ASSGAG~P~HFe------------E--vF~kT~adAaLaAGi  517 (541)
T KOG0623|consen  490 ASSGAGTPDHFE------------E--VFEKTNADAALAAGI  517 (541)
T ss_pred             ecCCCCCcHHHH------------H--HHHhcCchhhhhccc
Confidence            877677775322            2  244566777888887

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=81.52  E-value=66  Score=32.80  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCC-
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQS---------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFY-  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS---------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~-  298 (480)
                      .+++.+.+.++++++.||.-|=|==+.         +......++.+|-.+++.-+.++ +..   .+++|  -.|++- 
T Consensus        89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~~---~~~~IiARTDa~~~  164 (285)
T TIGR02320        89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QTT---EDFMIIARVESLIL  164 (285)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-ccC---CCeEEEEecccccc
Confidence            588899999999999999998881100         00012346665555555444333 222   24444  336552 


Q ss_pred             H----HHHHH---HHHcCCCEEecCCCCCCCchHHHHHHhcC-----CCEEEEc
Q 038230          299 S----KVASE---AVGKGAHIVNDVSAGQLDPDMYKVVAGLK-----VPYVAMH  340 (480)
Q Consensus       299 ~----~v~~a---aL~~G~~iINdVsg~~~d~~m~~l~~~~~-----~~vVlmh  340 (480)
                      .    ++++.   ..++|||+|-=..+....+++..++++..     .|++++.
T Consensus       165 ~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~  218 (285)
T TIGR02320       165 GKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP  218 (285)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence            2    33333   34469999983322332367888888764     4776543

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=81.45  E-value=48  Score=31.17  Aligned_cols=97  Identities=19%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC---HHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY---SKVASE  304 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~---~~v~~a  304 (480)
                      ..+++...+.++.+.+.|||.|-++...  .-|+.. ++    +    ..++.+++.   .+.|+.+|-+-   .+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~-~~----~----~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~   74 (210)
T TIGR01163         7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLT-FG----P----PVLEALRKY---TDLPIDVHLMVENPDRYIED   74 (210)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc-cC----H----HHHHHHHhc---CCCcEEEEeeeCCHHHHHHH
Confidence            3567788899999999999999998321  112221 11    1    234445543   24454443222   345667


Q ss_pred             HHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEE
Q 038230          305 AVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       305 aL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlm  339 (480)
                      +.++|++.|- +-++..+  ...++.+++++..++++
T Consensus        75 ~~~~gadgv~-vh~~~~~~~~~~~~~~~~~g~~~~~~  110 (210)
T TIGR01163        75 FAEAGADIIT-VHPEASEHIHRLLQLIKDLGAKAGIV  110 (210)
T ss_pred             HHHcCCCEEE-EccCCchhHHHHHHHHHHcCCcEEEE
Confidence            7788999754 2233212  35667788889887765

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=81.43  E-value=24  Score=35.94  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=73.0

Q ss_pred             HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----ch----HHHHHHhcCCCEEEEcC
Q 038230          274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +..+++..++..   -...++++++.+.+++.+++    +.++|-.++-...+    +.    +..++.++.+||++--+
T Consensus         6 ~k~iL~~A~~~~---yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLD   82 (284)
T PRK12857          6 VAELLKKAEKGG---YAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLD   82 (284)
T ss_pred             HHHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence            344555555541   35789999999998888875    88888878754321    22    34466788999887444


Q ss_pred             CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230          342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI  413 (480)
Q Consensus       342 ~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi  413 (480)
                      .|..                      .+.+.+|.+.|++  .|-+|   |-.-+.++|++.-+++    +..|+.+
T Consensus        83 H~~~----------------------~e~i~~ai~~Gft--SVM~D---gS~lp~eeNi~~T~~vv~~Ah~~gvsV  131 (284)
T PRK12857         83 HGTD----------------------FEQVMKCIRNGFT--SVMID---GSKLPLEENIALTKKVVEIAHAVGVSV  131 (284)
T ss_pred             CCCC----------------------HHHHHHHHHcCCC--eEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence            4321                      1345677778997  99999   4445678888887776    3455554

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=81.41  E-value=6.7  Score=37.56  Aligned_cols=105  Identities=25%  Similarity=0.242  Sum_probs=56.7

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCC--C
Q 038230          223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTF--Y  298 (480)
Q Consensus       223 SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~--~  298 (480)
                      +|.-|.  .+.+..+..+++.++.|||-||+-..-......  ..++-++.+    ..+++...  +.|  +.+.+.  +
T Consensus        60 ~fp~g~--~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~--~~~~~~~ei----~~v~~~~~--g~~lkvI~e~~~l~  129 (203)
T cd00959          60 GFPLGA--TTTEVKVAEAREAIADGADEIDMVINIGALKSG--DYEAVYEEI----AAVVEACG--GAPLKVILETGLLT  129 (203)
T ss_pred             ecCCCC--CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCC--CHHHHHHHH----HHHHHhcC--CCeEEEEEecCCCC
Confidence            444554  445677778999999999999996421110000  112223333    33333321  333  334333  3


Q ss_pred             HH----HHHHHHHcCCCEEecCCCCC------CC-chHHHHHHhcCCCEEE
Q 038230          299 SK----VASEAVGKGAHIVNDVSAGQ------LD-PDMYKVVAGLKVPYVA  338 (480)
Q Consensus       299 ~~----v~~aaL~~G~~iINdVsg~~------~d-~~m~~l~~~~~~~vVl  338 (480)
                      ++    +.+.|.++|+|+|---+|..      .+ ..|.+.++ ..+++.+
T Consensus       130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~ik~  179 (203)
T cd00959         130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGVKA  179 (203)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEEE
Confidence            33    35556667999999777653      22 23555555 4566655

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR02317 prpB methylisocitrate lyase

Probab=81.35  E-value=45  Score=34.04  Aligned_cols=106  Identities=21%  Similarity=0.222  Sum_probs=66.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQS------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKV  301 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v  301 (480)
                      |.++..+.+.++++++.||.-|=|-=+.      .-++...++.++-.+++.-+.++-. .   .++.|  -.|++...-
T Consensus        84 yG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~-~---~d~~IiARTDa~~~~g  159 (285)
T TIGR02317        84 FGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR-D---EDFVIIARTDARAVEG  159 (285)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc-C---CCEEEEEEcCcccccC
Confidence            4557888899999999999888774221      1123446777776777654443322 1   13222  227765444


Q ss_pred             HHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230          302 ASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       302 ~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh  340 (480)
                      +++|++       +|||+|- +-+.+..+++..++++.+.|+++..
T Consensus       160 ~deAI~Ra~ay~~AGAD~vf-i~g~~~~e~i~~~~~~i~~Pl~~n~  204 (285)
T TIGR02317       160 LDAAIERAKAYVEAGADMIF-PEALTSLEEFRQFAKAVKVPLLANM  204 (285)
T ss_pred             HHHHHHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHHhcCCCEEEEe
Confidence            444444       4999998 5555534778889998888886533

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=81.24  E-value=8.3  Score=43.42  Aligned_cols=95  Identities=19%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             CCCc-cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCHHH
Q 038230          226 DGGK-FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYSKV  301 (480)
Q Consensus       226 dgg~-~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~~v  301 (480)
                      |.++ ..+.+--++.|.+++++|++|+-|--...-     .  .-|-.++  +|.+|++.+  +++||-|   ||.-..|
T Consensus       709 dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~-----l--KP~aa~l--Li~alRdk~--PdlPiHvHtHDtsGagV  777 (1176)
T KOG0369|consen  709 DPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGV-----L--KPEAAKL--LIGALRDKF--PDLPIHVHTHDTSGAGV  777 (1176)
T ss_pred             CcccccccHHHHHHHHHHHHhccCeEEeehhhhcc-----c--CHHHHHH--HHHHHHhhC--CCCceEEeccCCccHHH
Confidence            4444 568888999999999999999988632111     1  1233344  478889875  6999988   5555554


Q ss_pred             --HHHHHHcCCCE----EecCCCCCCCchHHHHHHh
Q 038230          302 --ASEAVGKGAHI----VNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       302 --~~aaL~~G~~i----INdVsg~~~d~~m~~l~~~  331 (480)
                        |.+|+++|||.    ++|.||.+..|.|-.+++.
T Consensus       778 AsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAs  813 (1176)
T KOG0369|consen  778 ASMLACALAGADVVDVAVDSMSGMTSQPSMGALVAS  813 (1176)
T ss_pred             HHHHHHHHcCCceeeeecccccccccCCchhhhhhh
Confidence              56788899996    4788887766777666553

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=81.18  E-value=53  Score=31.56  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=60.0

Q ss_pred             CCeEEEeC---CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          289 GKLVSVDT---FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       289 ~~pISIDT---~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                      .+.+.++.   ...+.++.+.++|++.|- +... ..+++.+.+++++.+++..-.   +                    
T Consensus        57 ~v~~i~~~~~~~~~~~~~~~~~~g~d~v~-l~~~-~~~~~~~~~~~~~i~~i~~v~---~--------------------  111 (236)
T cd04730          57 GVNLLVPSSNPDFEALLEVALEEGVPVVS-FSFG-PPAEVVERLKAAGIKVIPTVT---S--------------------  111 (236)
T ss_pred             EEeEecCCCCcCHHHHHHHHHhCCCCEEE-EcCC-CCHHHHHHHHHcCCEEEEeCC---C--------------------
Confidence            34555554   566788899999999774 3333 357788888888877765321   0                    


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEecC----CCCccChhHHHHHHHhcc-cCCCcEEEe
Q 038230          366 ELYSKVRDAELSGIPAWRIIIDPG----LGFSKKAEHNLDILLGLA-ASHAPILIG  416 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~IilDPg----iGf~k~~~~~~~~lr~l~-~~g~Pil~G  416 (480)
                        .+.+..+.+.|.+  -|++|+.    .+.... ...++.+++++ ..+.|++++
T Consensus       112 --~~~~~~~~~~gad--~i~~~~~~~~G~~~~~~-~~~~~~i~~i~~~~~~Pvi~~  162 (236)
T cd04730         112 --VEEARKAEAAGAD--ALVAQGAEAGGHRGTFD-IGTFALVPEVRDAVDIPVIAA  162 (236)
T ss_pred             --HHHHHHHHHcCCC--EEEEeCcCCCCCCCccc-cCHHHHHHHHHHHhCCCEEEE
Confidence              0223445567764  5788883    222211 13466777763 468899875

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=81.06  E-value=60  Score=32.08  Aligned_cols=145  Identities=14%  Similarity=0.141  Sum_probs=84.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHHH-
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAVG-  307 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL~-  307 (480)
                      ++++..+.++++++.|...+-|-..     .   +++++++++    +++++... .++.|.+|..   +++.+.+.++ 
T Consensus        85 ~~~~~~~~~~~~~~~G~~~~KiKvg-----~---~~~~d~~~v----~~vr~~~g-~~~~l~vDan~~~~~~~a~~~~~~  151 (265)
T cd03315          85 EPAEVAEEARRALEAGFRTFKLKVG-----R---DPARDVAVV----AALREAVG-DDAELRVDANRGWTPKQAIRALRA  151 (265)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecC-----C---CHHHHHHHH----HHHHHhcC-CCCEEEEeCCCCcCHHHHHHHHHH
Confidence            5788899999999999999988642     1   134556654    44554321 2689999974   3444433322 


Q ss_pred             ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230          308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI  384 (480)
Q Consensus       308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I  384 (480)
                         .|.++|-.-......+.+..+.+..++|+++--+-   .+.                ..+.+   .+.+.+++  =|
T Consensus       152 l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~---~~~----------------~~~~~---~i~~~~~d--~v  207 (265)
T cd03315         152 LEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESA---FTP----------------HDAFR---ELALGAAD--AV  207 (265)
T ss_pred             HHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCC---CCH----------------HHHHH---HHHhCCCC--EE
Confidence               38888876543221256777888888897762211   000                11121   22334454  68


Q ss_pred             EEecCC-CCccChhHHHHHHHhcccCCCcEEEe
Q 038230          385 IIDPGL-GFSKKAEHNLDILLGLAASHAPILIG  416 (480)
Q Consensus       385 ilDPgi-Gf~k~~~~~~~~lr~l~~~g~Pil~G  416 (480)
                      .+||.. |-   ....+++.+..+..|+++.+|
T Consensus       208 ~~k~~~~GG---i~~~~~~~~~A~~~gi~~~~~  237 (265)
T cd03315         208 NIKTAKTGG---LTKAQRVLAVAEALGLPVMVG  237 (265)
T ss_pred             EEecccccC---HHHHHHHHHHHHHcCCcEEec
Confidence            899853 21   122333443335579999887

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=81.02  E-value=10  Score=37.58  Aligned_cols=160  Identities=19%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G  309 (480)
                      +-++.|+.+-++|||   ++||-+.+  -+         -+-+..+|+...+.   ..+|+++=  -...+-++.-|.+|
T Consensus        31 DpVelA~~Y~e~GADElvFlDItAs~--~g---------r~~~~~vv~r~A~~---vfiPltVGGGI~s~eD~~~ll~aG   96 (256)
T COG0107          31 DPVELAKRYNEEGADELVFLDITASS--EG---------RETMLDVVERVAEQ---VFIPLTVGGGIRSVEDARKLLRAG   96 (256)
T ss_pred             ChHHHHHHHHHcCCCeEEEEeccccc--cc---------chhHHHHHHHHHhh---ceeeeEecCCcCCHHHHHHHHHcC
Confidence            568899999999998   67998633  22         23455667777776   47898884  57888999999999


Q ss_pred             CCEEecCCC-CCCCchHHH-HHHhcCCCEEEEc--CC----CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          310 AHIVNDVSA-GQLDPDMYK-VVAGLKVPYVAMH--MR----GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       310 ~~iINdVsg-~~~d~~m~~-l~~~~~~~vVlmh--~~----g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      ||=|- |+. .-.+|+++. .+.++|...|+..  .+    |.+..-+-...-..++.--+    ..+-..++++.|-- 
T Consensus        97 ADKVS-INsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d----~~~Wa~~~e~~GAG-  170 (256)
T COG0107          97 ADKVS-INSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLD----AVEWAKEVEELGAG-  170 (256)
T ss_pred             CCeee-eChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcC----HHHHHHHHHHcCCc-
Confidence            99553 322 233677655 4555786655543  21    21110000000000010001    12334566788887 


Q ss_pred             CCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230          382 WRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                       -|+|--.=.=|...-..+++++.+ ....+|++.
T Consensus       171 -EIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIA  204 (256)
T COG0107         171 -EILLTSMDRDGTKAGYDLELTRAVREAVNIPVIA  204 (256)
T ss_pred             -eEEEeeecccccccCcCHHHHHHHHHhCCCCEEe
Confidence             677764211122222237777777 457899875

>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC

Probab=80.89  E-value=79  Score=33.31  Aligned_cols=147  Identities=10%  Similarity=-0.008  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCCeEE--EeCCCHHHHHH
Q 038230          234 EAAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGKLVS--VDTFYSKVASE  304 (480)
Q Consensus       234 e~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~pIS--IDT~~~~v~~a  304 (480)
                      +..++.++.|++.||+   ++.+.. |   .+..+|++.=-+.+.|    +++.+++.    +.++.  ++-.....++.
T Consensus       214 d~~i~~~~~~ieaGa~~~i~i~~~~-s---~~~~lsp~~f~ef~~P~~k~i~~~i~~~----g~~~ilh~cG~~~~~l~~  285 (378)
T cd03308         214 PLMIKMGTATAPAPYPGPVFTPIPL-H---LPPFLRPKQFEKFYWPSFKKVVEGLAAR----GQRIFLFFEGDWERYLEY  285 (378)
T ss_pred             HHHHHHHHHHHHhCCCCceEEEecc-c---ccCccCHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEcCCCcHHHHHH
Confidence            4566788999999999   455532 1   2346777553333334    44455443    44444  34444445666


Q ss_pred             HHHcCCC-EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230          305 AVGKGAH-IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR  383 (480)
Q Consensus       305 aL~~G~~-iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~  383 (480)
                      -.+.|++ +++....    ..+.+..+.+|-.++++-+- .|..+..       ...+++.+...+.++.+    .+...
T Consensus       286 l~~~g~~~v~~~~~~----~dl~~ak~~~g~~~~i~GNl-~p~~L~~-------Gt~e~i~~~v~~~l~~~----~~~~g  349 (378)
T cd03308         286 LQELPKGKTVGLFEY----GDPKKVKEKLGDKKCIAGGF-PTTLLKY-------GTPEECIDYVKELLDTL----APGGG  349 (378)
T ss_pred             HHhcCCCcEEEcCCC----CCHHHHHHHhCCCEEEEcCC-CCHHHhc-------CCHHHHHHHHHHHHHHh----CCCCC
Confidence            6667887 7765542    35566666777667877653 2222221       01123333334444433    32235


Q ss_pred             EEEecCCCCc-cCh--hHHHHHHH
Q 038230          384 IIIDPGLGFS-KKA--EHNLDILL  404 (480)
Q Consensus       384 IilDPgiGf~-k~~--~~~~~~lr  404 (480)
                      -|+-||.|.. .+.  .+|++.+-
T Consensus       350 fIl~~gcgi~p~tp~~~eNi~a~v  373 (378)
T cd03308         350 FIFGTDKPIISADDAKPENLIAVI  373 (378)
T ss_pred             EEEeCCCcCCCCCCCChHHHHHHH
Confidence            8999998874 333  56766543

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=80.70  E-value=70  Score=32.60  Aligned_cols=173  Identities=16%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             EEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       213 imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      =+|-+|+.-           .+.+....+.-.+.++-+|=--.+++...   .+    .+.+.+.++.+.+.   .++||
T Consensus        17 AV~AfN~~n-----------~e~~~avi~AAee~~sPvIlq~s~~~~~~---~~----~~~~~~~~~~~a~~---~~VPV   75 (282)
T TIGR01858        17 AVPAFNIHN-----------LETIQAVVETAAEMRSPVILAGTPGTFKH---AG----TEYIVALCSAASTT---YNMPL   75 (282)
T ss_pred             eEEEEEeCC-----------HHHHHHHHHHHHHhCCCEEEEeCccHHhh---CC----HHHHHHHHHHHHHH---CCCCE
Confidence            366777764           34444444444455666554444444321   11    44456677777765   36776


Q ss_pred             EE--e-CCCHHHHHHHHHcCCC-EEecCCCCCCC------chHHHHHHhcCCCEE--EEcCCCCCCccc-cccccchhhH
Q 038230          293 SV--D-TFYSKVASEAVGKGAH-IVNDVSAGQLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQ-NEENLQYDDV  359 (480)
Q Consensus       293 SI--D-T~~~~v~~aaL~~G~~-iINdVsg~~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~-~~~~~~~~~v  359 (480)
                      +|  | ..+.+.++.|++.|.. +.-|-|...++      .++.++|..+|++|=  +=|..|.-.... ......|.++
T Consensus        76 alHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p  155 (282)
T TIGR01858        76 ALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP  155 (282)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCH
Confidence            66  6 5688999999999976 44455554433      357888888888764  223322211100 0000113332


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC----cc-ChhHHHHHHHhc-ccCCCcEEE-eec
Q 038230          360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF----SK-KAEHNLDILLGL-AASHAPILI-GPS  418 (480)
Q Consensus       360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf----~k-~~~~~~~~lr~l-~~~g~Pil~-G~S  418 (480)
                              ++..+..++-|++    .|=+.+|-    -| .+.-++++|++| +..++|+.+ |-|
T Consensus       156 --------eea~~Fv~~TgvD----~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgS  209 (282)
T TIGR01858       156 --------QEAKEFVEATGVD----SLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGAS  209 (282)
T ss_pred             --------HHHHHHHHHHCcC----EEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCC
Confidence                    2333334567886    55565553    22 245568889988 456899865 665

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=80.53  E-value=30  Score=36.15  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHcCCcCCC--CeEEEeCC--------CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230          271 LERLIPVLEAVLTMPEMEG--KLVSVDTF--------YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       271 ~~rl~~vi~~l~~~~~~~~--~pISIDT~--------~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh  340 (480)
                      ...+.++.+..++.    +  +++.+-.-        -++.+..|+..|++=|-=-.....++++++.+++.++++=+++
T Consensus       178 ~~~f~~~f~~ar~~----g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEvCP  253 (345)
T cd01321         178 LLDFLPQLLWFPKQ----CAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVCP  253 (345)
T ss_pred             HHHHHHHHHHHHHh----CCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEECc
Confidence            44566777777765    5  78777443        2456667776676655322222347999999999999998877


Q ss_pred             CCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE---ecCCCCcc-ChhHHHHHHHh
Q 038230          341 MRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII---DPGLGFSK-KAEHNLDILLG  405 (480)
Q Consensus       341 ~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k-~~~~~~~~lr~  405 (480)
                      .... ....               ..+...=+.++.++|++   +.+   ||++ |+. +..+.+.++.+
T Consensus       254 tSN~~~~~v---------------~~~~~HPl~~ll~~Gv~---vtinTDDp~~-f~t~~l~~Ey~~~~~  304 (345)
T cd01321         254 ISNQVLGLV---------------SDLRNHPAAALLARGVP---VVISSDDPGF-WGAKGLSHDFYQAFM  304 (345)
T ss_pred             chhhhhccc---------------cchhhChHHHHHHCCCe---EEEeCCCcch-hCCCCchHHHHHHHH
Confidence            6311 1000               01122346677889996   777   7766 666 77666666654

>PF14385 DUF4416: Domain of unknown function (DUF4416)

Probab=80.48  E-value=9.8  Score=35.68  Aligned_cols=87  Identities=24%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             eeEEEEeCCCcccHHHHHHHHHHHHHhcCCcEEEeeCcEEeCCCCCCCCcccee---------eeeeeccCCCHHHH---
Q 038230           44 QEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLN---------SAVRGVTKLGPHEL---  111 (480)
Q Consensus        44 ~~~~l~LGSN~gd~~~~i~~A~~~L~~~~~~i~~~S~~y~T~P~g~~~q~~F~N---------~v~~~~T~l~p~~L---  111 (480)
                      -..++++=+|  +-+..+..+...|.+.++.+     .|+|+|+.+. .++|+|         ..+.++.-.+|++|   
T Consensus         5 a~l~~~v~~~--~~~~~~~~v~~~L~~~fG~i-----~~~S~~~pF~-~t~YY~~EmG~~l~r~~~sF~~li~~~~L~~i   76 (164)
T PF14385_consen    5 AKLFIAVLSN--DDDEWLEEVKPKLEKKFGPI-----DYESPPFPFD-YTDYYNKEMGPGLKRRFISFKRLIHPEELADI   76 (164)
T ss_pred             eEEEEEEeec--chHHHHHHHHHHHHHhhCch-----heecCCCCCC-cccccchhcCCCceEEEEEEcccCCHHHHHHH
Confidence            3556677677  24789999999999998877     3566666654 566664         56777777777765   


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCccchhhcccC
Q 038230          112 LGVLKKIEKDMGRTNGIRHGPRPIDLDILFYG  143 (480)
Q Consensus       112 l~~lk~IE~~~GR~r~~~~~~r~iDiDIl~~~  143 (480)
                      ...+.+||+.+..     .|.|++.||-=...
T Consensus        77 K~~tn~iE~~~~~-----~g~R~VNiDPGYl~  103 (164)
T PF14385_consen   77 KLETNEIEKEFAK-----DGKRRVNIDPGYLT  103 (164)
T ss_pred             HHHHHHHHHHHHh-----cCCceEEeCceecc
Confidence            5678899999985     33477777754443

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=80.41  E-value=42  Score=36.68  Aligned_cols=65  Identities=11%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCHHHHHHHHHcCCCEEe
Q 038230          237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~~v~~aaL~~G~~iIN  314 (480)
                      .++++.|++.|+++|-+-.  +...         ...+...++.+++..  .++||. =+-..++.++.+.++|++.|.
T Consensus       230 ~e~a~~L~~agvdvivvD~--a~g~---------~~~vl~~i~~i~~~~--p~~~vi~g~v~t~e~a~~l~~aGad~i~  295 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDT--AHGH---------SEGVLDRVREIKAKY--PDVQIIAGNVATAEAARALIEAGADAVK  295 (486)
T ss_pred             HHHHHHHHHhCCCEEEEEC--CCCc---------chhHHHHHHHHHhhC--CCCCEEEeccCCHHHHHHHHHcCCCEEE
Confidence            7899999999999997653  2111         123445567777653  366744 588899999999999999996

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=80.24  E-value=57  Score=33.65  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHHH-
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAVG-  307 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL~-  307 (480)
                      ++++..+.|+++.++|.+.+-|-........      +-+++....|+++++... .+.+|.+|..   +++.+.+.++ 
T Consensus       139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~------~~~~~d~~~v~~ir~~~g-~~~~l~vDaN~~~~~~~a~~~~~~  211 (357)
T cd03316         139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG------EDLREDLARVRAVREAVG-PDVDLMVDANGRWDLAEAIRLARA  211 (357)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch------HHHHHHHHHHHHHHHhhC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence            6888999999999999999988542110000      112223344566665432 3789999975   4444433333 


Q ss_pred             ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                         .|..+|=.-......+.+..+.+..++++++
T Consensus       212 l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~  245 (357)
T cd03316         212 LEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAA  245 (357)
T ss_pred             hCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEe
Confidence               2566664332211114566676777888776

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	480
2bmb_A	545	X-Ray Structure Of The Bifunctional 6-Hydroxymethyl		3e-59
1tws_A	297	Dihydropteroate Synthetase From Bacillus Anthracis		5e-50
3v5o_A	297	Structural And Mechanistic Studies Of Catalysis And		2e-49
1aj0_A	282	Crystal Structure Of A Ternary Complex Of E. Coli D		3e-49
2dqw_A	294	Crystal Structure Of Dihydropteroate Synthase (Folp		3e-47
1ad1_A	266	Dihydropteroate Synthetase (Apo Form) From Staphylo		2e-46
4hb7_A	270	The Structure Of Dihydropteroate Synthase From Stap		2e-45
1eye_A	280	1.7 Angstrom Resolution Crystal Structure Of 6-Hydr		1e-44
3tyu_A	280	Crystal Structure Of Dihydropteroate Synthetase Wit		9e-44
2y5j_A	294	Crystal Structure Of Burkholderia Cenocepacia Dihyd		6e-36
3mcm_A	442	Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydro		1e-32
2vef_A	314	Dihydropteroate Synthase From Streptococcus Pneumon		4e-29
3tr9_A	314	Structure Of A Dihydropteroate Synthase (Folp) In C		2e-28
3qbc_A	161	Structure And Design Of A New Pterin Site Inhibitor		4e-21
2qx0_A	159	Crystal Structure Of Yersinia Pestis Hppk (Ternary		2e-17
2cg8_A	270	The Bifunctional Dihydroneopterin Aldolase 6-Hydrox		3e-17
1cbk_A	160	7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase		4e-17
1tmj_A	158	Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45		8e-16
1dy3_A	158	Ternary Complex Of 7,8-Dihydro-6- Hydroxymethylpter		8e-16
3hsd_A	158	Crystal Structure Of E. Coli Hppk(Y53a) Length = 15		3e-15
3kue_A	158	Crystal Structure Of E. Coli Hppk(E77a) Length = 15		4e-15
3hd2_A	158	Crystal Structure Of E. Coli Hppk(Q50a) In Complex		4e-15
1hq2_A	158	Crystal Structure Of A Ternary Complex Of E.Coli Hp		5e-15
1f9h_A	158	Crystal Structure Of The Ternary Complex Of E. Coli		5e-15
1rtz_A	152	Crystal Structure Of E.Coli Apo-Hppk(V83gDEL84-89)		5e-15
3hsj_A	158	Crystal Structure Of E. Coli Hppk(N55a) Length = 15		6e-15
3hcx_A	158	Crystal Structure Of E. Coli Hppk(N10a) Length = 15		6e-15
3ill_A	158	Crystal Structure Of E. Coli Hppk(D97a) Length = 15		6e-15
3ili_A	158	Crystal Structure Of E. Coli Hppk(D95a) Length = 15		6e-15
3hsz_A	158	Crystal Structure Of E. Coli Hppk(F123a) Length = 1		8e-15
3kug_A	158	Crystal Structure Of E. Coli Hppk(H115a) Length = 1		9e-15
2vp8_A	318	Structure Of Mycobacterium Tuberculosis Rv1207 Leng		4e-13

>pdb|2BMB|A Chain A, X-Ray Structure Of The Bifunctional 6-Hydroxymethyl-7,8- Dihydroxypterin Pyrophosphokinase Dihydropteroate Synthase From Saccharomyces Cerevisiae Length = 545

Iteration: 1
 Score =  226 bits (575), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 161/519 (31%), Positives = 263/519 (50%), Gaps = 95/519 (18%)
Query: 48  IAMGSNVGDRLCNFNEALQLM-KKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           +A GSN+GDR  +   ALQL+ ++  V +     ++E+EP Y  DQ  F+N  V   T L
Sbjct: 23  LAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVETLL 82
Query: 107 GPHELLGVLKKIE-KDMGRTNGIRHGPRPIDLDILFYGRFS-----IHSDTLTVPHERIW 160
            P ELL + KKIE +++ R     +GPR IDLDI+ +   +     ++   L +PH R+ 
Sbjct: 83  TPSELLKLCKKIEYEELQRVKHFDNGPRTIDLDIVMFLNSAGEDIIVNEPDLNIPHPRML 142
Query: 161 ERPFVVAPLLDLLG---------------------SSVESDTKLGGESLIGKEGMK-RVL 198
           ER FV+ PL +L+                         + DT      L  + G++ R L
Sbjct: 143 ERTFVLEPLCELISPVHLHPVTAEPIVDHLKQLYDKQHDEDTLWKLVPLPYRSGVEPRFL 202
Query: 199 PI--GNLLWDWSLKTS--------VMGILNLTPDSFSDGGK-FQSVEAAVSQV------R 241
                  L +++ +T+        +M I N TPDSFSDGG+ F  +E+ ++ +       
Sbjct: 203 KFKTATKLDEFTGETNRITVSPTYIMAIFNATPDSFSDGGEHFADIESQLNDIIKLCKDA 262
Query: 242 LMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM--EGKLVSVDTFYS 299
           L + E   +ID+G  STRP + + S E+E+ R IP+++A+    E+  +  ++S+DT+ S
Sbjct: 263 LYLHESV-IIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRS 321
Query: 300 KVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHMRGDPSTM---------- 348
            VA EA+  G  I+ND+S G  D +M+ V+A   ++ Y+  H RGD STM          
Sbjct: 322 NVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFA 381
Query: 349 ----------QNEENLQYDDV------CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
                      N +  Q DD+       + V  E+  +   A  +G+  W+I+IDPGLGF
Sbjct: 382 LGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGF 441
Query: 393 SKKAEHNLDIL-------------------LGLAASHAPILIGPSRKRFLGEICNRPSAD 433
           +K  + NL I+                   + +   + P+L+GPSRK+F+G I     A 
Sbjct: 442 AKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNMPVLLGPSRKKFIGHITKDVDAK 501
Query: 434 ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
           +RD AT A + + +  G+++VRVH++++   ++KL D++
Sbjct: 502 QRDFATGAVVASCIGFGSDMVRVHDVKNCSKSIKLADAI 540

>pdb|1TWS|A Chain A, Dihydropteroate Synthetase From Bacillus Anthracis Length = 297

Iteration: 1
 Score =  195 bits (495), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 174/289 (60%), Gaps = 29/289 (10%)
Query: 202 NLLWDWSL-----------KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADM 250
           ++ WD+ L           KT +MGILN+TPDSFSDGG +  V+AAV   + M  EGA +
Sbjct: 20  HMKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHI 79
Query: 251 IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVGKG 309
           IDIG +STRP   K+S E+E++R++P+++AV      E KL +S+DT+ ++VA +A+  G
Sbjct: 80  IDIGGESTRPGFAKVSVEEEIKRVVPMIQAV----SKEVKLPISIDTYKAEVAKQAIEAG 135
Query: 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369
           AHI+ND+   + +P + +V A   VP + MH         N +N+ Y ++   + ++LY 
Sbjct: 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMH---------NRDNMNYRNLMADMIADLYD 186
Query: 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEI 426
            ++ A+ +G+    II+DPG+GF+K  E NL+ +  L   +    P+L+G SRK F+G +
Sbjct: 187 SIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHV 246
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
            + P  +ER   T A++  G+  G   VRVH++++     K+ D+M+ +
Sbjct: 247 LDLP-VEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 294

>pdb|3V5O|A Chain A, Structural And Mechanistic Studies Of Catalysis And Sulfa Drug Resistance In Dihydropteroate Synthase Length = 297

Iteration: 1
 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 174/289 (60%), Gaps = 29/289 (10%)
Query: 202 NLLWDWSL-----------KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADM 250
           ++ WD+ L           KT +MGILN+TPDSFSDGG +  V+AAV   + M  EGA +
Sbjct: 20  HMKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHI 79
Query: 251 IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVGKG 309
           IDIG +STRP   K+S E+E++R++P+++AV      E KL +S+DT+ ++VA +A+  G
Sbjct: 80  IDIGGESTRPGFAKVSVEEEIKRVVPMIQAV----SKEVKLPISIDTYKAEVAKQAIEAG 135
Query: 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369
           AHI+ND+   + +P + +V A   VP + MH         N +N+ Y ++   + ++LY 
Sbjct: 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMH---------NRDNMNYRNLMADMIADLYD 186
Query: 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEI 426
            ++ A+ +G+    II++PG+GF+K  E NL+ +  L   +    P+L+G SRK F+G +
Sbjct: 187 SIKIAKDAGVRDENIILNPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHV 246
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
            + P  +ER   T A++  G+  G   VRVH++++     K+ D+M+ +
Sbjct: 247 LDLP-VEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 294

>pdb|1AJ0|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Dihydropteroate Synthase Length = 282

Iteration: 1
 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 167/270 (61%), Gaps = 12/270 (4%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17  VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQ 76
Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+ND+ +   +P   +  A  
Sbjct: 77  RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAET 132
Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            +P   MHM+G+P TMQ  E  +YDDV  +V      ++   E +GI   ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190
Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN-RPSADERDPATIASITAGVL 448
            K   HN  +L  LA  H    P+L+G SRK  +G++ N  PS  ER   ++A      +
Sbjct: 191 GKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPS--ERLSGSLACAVIAAM 248
Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
            GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 249 QGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From Thermus Thermophilus Hb8 Length = 294

Iteration: 1
 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/286 (40%), Positives = 177/286 (61%), Gaps = 20/286 (6%)
Query: 197 VLPIGNLLW--DWSL---KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI 251
           ++P    LW  D +L   +  ++G+LNLTPDSFSDGG++   E A+ + R M++EGAD++
Sbjct: 10  IIPPVRTLWLRDRALDLDRVRLLGVLNLTPDSFSDGGRYLDPERALERAREMVAEGADIL 69
Query: 252 DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH 311
           D+GA+STRP A  +  E+E  RL+PVLEAVL++    G  VSVDT   +VA EA+  GAH
Sbjct: 70  DLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL----GVPVSVDTRKPEVAEEALKLGAH 125
Query: 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQYDDVCKQVASELYSK 370
           ++NDV+ G  D  M  + A   V  V MHM   DP+TM    + +Y DV  +V + L ++
Sbjct: 126 LLNDVT-GLRDERMVALAARHGVAAVVMHMPVPDPATMMA--HARYRDVVAEVKAFLEAQ 182
Query: 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPILIGPSRKRFLGEI 426
            R A  +G+P  ++++DPG GF K  EHNL +L  L    A  H P+L+G SRKR +GE+
Sbjct: 183 ARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGH-PVLVGLSRKRTIGEL 239
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
                  +R   ++A+    V+ G  ++RVH++R + +A+ + +++
Sbjct: 240 SGVEDPAQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEAL 285

>pdb|1AD1|A Chain A, Dihydropteroate Synthetase (Apo Form) From Staphylococcus Aureus Length = 266

Iteration: 1
 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 156/265 (58%), Gaps = 17/265 (6%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT +MGILN+TPDSFSDGGKF +VE+AV++V+ M+ EGAD+ID+G  STRP    I+ E+
Sbjct: 2   KTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE 61
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           EL R++PV+EA++         +SVDTF S+VA   +  G  I+ND  AG  D  M++VV
Sbjct: 62  ELNRVLPVVEAIVGFDVK----ISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVV 117
Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      V MH         N    + + V +++ + L ++   A+++GIP+ +I +DPG
Sbjct: 118 AKYDAEIVLMH---------NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 168
Query: 390 LGFSKKAEHNLDILL---GLAASHAPILIGPSRKRFLGEICNRPSAD-ERDPATIASITA 445
           +GF+K      +++     L A+  P+L+  SRKRF  E+    +   ERD  T A+   
Sbjct: 169 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 228
Query: 446 GVLGGANIVRVHNIRDNLDAVKLCD 470
           G++ G   VRVHN+  N    K  D
Sbjct: 229 GIMKGVRAVRVHNVELNAKLAKGID 253

>pdb|4HB7|A Chain A, The Structure Of Dihydropteroate Synthase From Staphylococcus Aureus Subsp. Aureus Mu50. Length = 270

Iteration: 1
 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/265 (38%), Positives = 155/265 (58%), Gaps = 17/265 (6%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT +MGILN+TPDSFSDGGKF +VE A+++V+ MI EGAD+ID+G  STRP    ++ E+
Sbjct: 6   KTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEE 65
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           EL R++PV+EA++         +SVDTF S+VA   +  G  ++ND  AG  D  M+++V
Sbjct: 66  ELNRVLPVVEAIVGFDVK----ISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIV 121
Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      + MH         N    + + V +++ + L ++   A+++GIP+ +I +DPG
Sbjct: 122 AKYDAEIILMH---------NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 172
Query: 390 LGFSKKAEHNLDILL---GLAASHAPILIGPSRKRFLGEICNRPSAD-ERDPATIASITA 445
           +GF+K      +++     L A+  P+L+  SRKRF  E+    +   ERD  T A+   
Sbjct: 173 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 232
Query: 446 GVLGGANIVRVHNIRDNLDAVKLCD 470
           G++ G   VRVHN+  N    K  D
Sbjct: 233 GIMKGVRAVRVHNVELNAKLAKGID 257

>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of 6-Hydroxymethyl-7,8- Dihydropteroate Synthase (Dhps) From Mycobacterium Tuberculosis In Complex With 6-Hydroxymethylpterin Monophosphate Length = 280

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 160/269 (59%), Gaps = 13/269 (4%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMG+LN+T DSFSDGG +  ++ AV     M + GA ++D+G +S+RP AT++    E  
Sbjct: 8   VMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETS 67
Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
           R+IPV++ +      +G  VS+DT  + VA  A+  GA +VNDVS G+ DP M  ++A  
Sbjct: 68  RVIPVVKELAA----QGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEA 123
Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
            VP+V MH R   S       ++Y +V  +V ++L + V DA  +G+   R+++DPGLGF
Sbjct: 124 DVPWVLMHWRA-VSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182
Query: 393 SKKAEHNLDILLG---LAASHAPILIGPSRKRFLGEICNRPSA-----DERDPATIASIT 444
           +K A+HN  IL     L A+  P+L+G SRKRFLG +   P       D RD AT     
Sbjct: 183 AKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISA 242
Query: 445 AGVLGGANIVRVHNIRDNLDAVKLCDSML 473
              L GA  VRVH++R ++DA+K+ ++ +
Sbjct: 243 LAALHGAWGVRVHDVRASVDAIKVVEAWM 271

>pdb|3TYU|A Chain A, Crystal Structure Of Dihydropteroate Synthetase With Product1 Length = 280

Iteration: 1
 Score =  174 bits (441), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 160/272 (58%), Gaps = 11/272 (4%)
Query: 203 LLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA 262
           L  D S +  VMGILN+TPDSFSDGG   +++ A+   + M+S GA +IDIG +STRP A
Sbjct: 11  LTLDLS-RPQVMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGA 69
Query: 263 TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD 322
            ++S ++EL+R++PV+EA+    ++    +SVDT  + V +E+   GAH++ND+ + Q +
Sbjct: 70  AEVSEQEELDRVVPVVEALAQRFDV---WLSVDTSKAAVITESAHAGAHLINDIRSLQ-E 125
Query: 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382
           P   +  A   +P   MHM+G P  MQ+     YDD+   +       +     +GI   
Sbjct: 126 PGALEAAAKTGLPVCLMHMQGQPKNMQHSP--YYDDLMTDINRFFQHHIERCVAAGIAKN 183
Query: 383 RIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPAT 439
           ++++DPG GF K   HN  +L  L+  H    P+L+G SRK  +G++ N P   +R   +
Sbjct: 184 KLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLNVPP-QQRVIGS 242
Query: 440 IASITAGVLGGANIVRVHNIRDNLDAVKLCDS 471
           +A      + GA I+RVH++++ ++A+ + ++
Sbjct: 243 VACAVIAAMQGAQIIRVHDVKETVEAMCIVEA 274

>pdb|2Y5J|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Dihydropteroate Synthase. Length = 294

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 149/271 (54%), Gaps = 19/271 (7%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           VMGILN TPDSFSDGG+F + + A+ +   MI+EGAD++DIG +STRP A  +  ++EL 
Sbjct: 25  VMGILNATPDSFSDGGRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELA 84
Query: 273 RLIPVLEAV--LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA 330
           R+IP++EA+  L +P      +S+DT+   V   A+  GA ++ND+  G   P     V 
Sbjct: 85  RVIPLVEALRPLNVP------LSIDTYKPAVMRAALAAGADLINDIW-GFRQPGAIDAVR 137
Query: 331 GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390
                  AMHM G+P TMQ  E   Y DV   V   L ++ +    +G+ A RI +DPG 
Sbjct: 138 DGNSGLCAMHMLGEPQTMQVGEP-DYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGF 196
Query: 391 GFSKK-AEHNLDILLGLAASHA--------PILIGPSRKRFLGEICNRPSADERDPATIA 441
           GF K   + N  +L  L  +          PIL G SRK  LG +       ER  A++A
Sbjct: 197 GFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGGKPPLERVAASVA 256
Query: 442 SITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
           +    V  GA IVRVH++   +DA+ + +++
Sbjct: 257 AALCAVERGAAIVRVHDVAATVDALSVWNAV 287

>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin Pyrophosphokinase Dihydropteroate Synthase Bifunctional Enzyme From Francisella Tularensis Length = 442

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 180/369 (48%), Gaps = 37/369 (10%)
Query: 48  IAMGSNVGDRLCNFNEALQ-LMKKLGVNITRHGCLYETEPAYVTDQP-----RFLNSAVR 101
           I +G+N G  + N + A+  L  +  + I R   LY ++     D P     RFLN+AV+
Sbjct: 26  IGIGTNSGFTIENIHLAITALESQQNIRIIRKASLYSSKAVLKEDAPKEWDIRFLNTAVK 85
Query: 102 GVTKLGPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIW 160
             + L P ELL +LK IE  +GR  N     PR IDLDIL      + +D LT+PH+ + 
Sbjct: 86  ISSSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAAEDLILETDKLTIPHKELI 145
Query: 161 ERPFVVAPLLDLLG-----SSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMG 215
            R F +APLL+L         VE D  +  + L     +K+ L            T  MG
Sbjct: 146 NRSFALAPLLELSKGWHHPKYVEWDLNIRLKELGEIVKLKQTLA----------NTIRMG 195
Query: 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275
           I+NL+  SFSDG  F   +  ++ +  +I  GA++IDIGA+ST+P A  IS E+E  +L 
Sbjct: 196 IVNLSNQSFSDGN-FDDNQRKLN-LDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLN 253
Query: 276 PVLEAVLTMPE--MEGKLVSVDTFYSKVASEAVGKGAHI---VNDVSAGQLDPDMYKVVA 330
             LE   +     +   LVS+DT   +V  + + K   I   +NDV    ++    +++A
Sbjct: 254 EFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECNNIEQKA-QLIA 312
Query: 331 GLKVPYVAMHMRG--DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388
                YV +H  G  D +   ++EN   D+VC  +  +    ++     GI    I  D 
Sbjct: 313 KYNKKYVIIHNLGITDRNQYLDKEN-AIDNVCDYIEQKKQILLK----HGIAQQNIYFDI 367
Query: 389 GLGFSKKAE 397
           G GF KK++
Sbjct: 368 GFGFGKKSD 376

>pdb|2VEF|A Chain A, Dihydropteroate Synthase From Streptococcus Pneumoniae Length = 314

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 156/294 (53%), Gaps = 34/294 (11%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT + GI+N+TPDSFSDGG+F ++E A+ Q R +I+EGA M+DIG +STRP ++ +  E+
Sbjct: 9   KTVICGIINVTPDSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEE 68
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           E++R++PV++A+    ++   L+S+DT+ S+VA  A+  GA +VND++    D  M  VV
Sbjct: 69  EIQRVVPVIKAIRKESDV---LISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVV 125
Query: 330 AGLKVPYV-----AMHMRGDPSTM-----------QNEENLQYDDVCKQVASELY--SKV 371
           A  +   V      M     PS++             EE   ++ +  +   E +    +
Sbjct: 126 AEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERAL 185
Query: 372 RDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN 428
             A  +GI    I++DPG+GF    + NL +L  L   H    PI +G SRKRF+  I  
Sbjct: 186 ARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINILE 245
Query: 429 R------PSAD----ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
                  P  +     RD A+    +     G  +VRVH++  +  AV++  ++
Sbjct: 246 ENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAI 299

>pdb|3TR9|A Chain A, Structure Of A Dihydropteroate Synthase (Folp) In Complex With Pteroic Acid From Coxiella Burnetii Length = 314

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 20/268 (7%)
Query: 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM----ATKISA 267
           +V GI+N++P+SF        + +A+      + EGAD++DIG ++T P         S 
Sbjct: 29  AVXGIINVSPNSFYH--PHLDLNSALRTAEKXVDEGADILDIGGEATNPFVDIKTDSPST 86
Query: 268 EKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYK 327
           + EL+RL+PV++A+    +   +L+SVDT   +V  EAV  GA  +ND  A QLD D   
Sbjct: 87  QIELDRLLPVIDAI---KKRFPQLISVDTSRPRVXREAVNTGADXINDQRALQLD-DALT 142
Query: 328 VVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387
            V+ LK P    H    PS  +   +  +    + V  EL   ++  + +GI   RIIID
Sbjct: 143 TVSALKTPVCLXHF---PSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIID 199
Query: 388 PGLG---FSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIA 441
           PG G   + K    N  +L  L    A   P+L G SRK  +G++ N+P  + R   +IA
Sbjct: 200 PGFGQGNYGKNVSENFYLLNKLPEFVAXGLPVLSGWSRKSXIGDVLNQP-PENRLFGSIA 258
Query: 442 SITAGVLGGANIVRVHNIRDNLDAVKLC 469
           +    V  GA+I+R H+++   +A+K+ 
Sbjct: 259 ADVLAVYHGASIIRTHDVKATREAIKIA 286

>pdb|3QBC|A Chain A, Structure And Design Of A New Pterin Site Inhibitor Of S. Aureus Hppk Length = 161

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           + +GSN+GDR    N+A++++ +  G++++    +YET P   T+QP FLN  V   T L
Sbjct: 9   LGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTL 68
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
              +LL    K E+ + R    R GPR +D+DIL YG   I    L+VPH R+ ER FV+
Sbjct: 69  TVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVL 128
Query: 167 APLLDLLGSSVESDTKLGGESLI 189
            PL D+  + VE  +KL  + L+
Sbjct: 129 IPLNDIAANVVEPRSKLKVKDLV 151

>pdb|2QX0|A Chain A, Crystal Structure Of Yersinia Pestis Hppk (Ternary Complex) Length = 159

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLGVN-ITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   + A + +  L  + +     LY T+P    DQP FLN+ V   T L
Sbjct: 6   IALGSNLAMPLQQVSAAREALAHLPRSRLVAXSPLYRTKPLGPQDQPDFLNAVVALDTSL 65
Query: 107 GPHELLGVLKKIEKDMGRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P +LL   + IE++ GR     R GPR +DLDI+ YG   I +D LT+PH  +  R F+
Sbjct: 66  PPEQLLDHTQAIERNQGRVRKEQRWGPRTLDLDIMLYGDQVIKTDRLTIPHYGLKAREFM 125
Query: 166 VAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLW 205
           + PL D+    +  D    GESL   E +KRV   G +LW
Sbjct: 126 LYPLADIAPDLIFPD----GESL--SECLKRVDKNGLVLW 159

>pdb|2CG8|A Chain A, The Bifunctional Dihydroneopterin Aldolase 6-Hydroxymethyl- 7,8-Dihydropterin Synthase From Streptococcus Pneumoniae Length = 270

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLG 107
           IA+GSN+GD+  N  +A+  ++  G++I +   +  TEP    +Q  F N  V   T L 
Sbjct: 124 IALGSNMGDKQANLKQAIDKLRARGIHILKESSVLATEPWGGVEQDSFANQVVEVETWLP 183
Query: 108 PHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVA 167
             +LL  L  IE ++GR   +  GPR IDLD+LF     +++D L +PH  I ER FV+ 
Sbjct: 184 AQDLLETLLAIESELGRVREVHWGPRLIDLDLLFVEDQILYTDDLILPHPYIAERLFVLE 243
Query: 168 PLLDL 172
            L ++
Sbjct: 244 SLQEI 248

>pdb|1CBK|A Chain A, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From Haemophilus Influenzae Length = 160

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   +   + AL+ + +L   ++      Y+++P    DQP ++N+  +  T+L
Sbjct: 6   IALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETEL 65
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
            P +LL  L++IE + GR    R G R +DLDIL YG   I ++ LT+PH  +  R FV+
Sbjct: 66  SPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVI 125
Query: 167 APLLDLLGSSVESDTKLGGE 186
            PL ++    V  ++++  E
Sbjct: 126 VPLFEIASDLVLPNSQIITE 145

>pdb|1TMJ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45 Angstrom Resolution Length = 158

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|1DY3|A Chain A, Ternary Complex Of 7,8-Dihydro-6- Hydroxymethylpterinpyrophosphokinase From Escherichia Coli With Atp And A Substrate Analogue. Length = 158

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3HSD|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a) Length = 158

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP  LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDALNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3KUE|A Chain A, Crystal Structure Of E. Coli Hppk(E77a) Length = 158

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++I    GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIALQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3HD2|A Chain A, Crystal Structure Of E. Coli Hppk(Q50a) In Complex With Mgam Pterin Length = 158

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    D P +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|1HQ2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli Hppk(R82a) With Mgampcpp And 6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom Resolution Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   G      R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGAVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|1F9H|A Chain A, Crystal Structure Of The Ternary Complex Of E. Coli Hppk(R92a) With Mgampcpp And 6-Hydroxymethyl-7,8- Dihydropterin At 1.50 Angstrom Resolution Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GP  +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|1RTZ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(V83gDEL84-89) At 1.33 Angstrom Resolution Length = 152

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
            P ELL   ++IE   GR      GPR +DLDI+ +G   I+++ LTVPH  +  R F++
Sbjct: 65  APEELLNHTQRIELQQGRG-----GPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFML 119
Query: 167 APLLDLLGSSVESDTKL 183
            PL ++    V  D ++
Sbjct: 120 WPLFEIAPELVFPDGEM 136

>pdb|3HSJ|A Chain A, Crystal Structure Of E. Coli Hppk(N55a) Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +L +AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLAAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3HCX|A Chain A, Crystal Structure Of E. Coli Hppk(N10a) Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GS +   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSALASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3ILL|A Chain A, Crystal Structure Of E. Coli Hppk(D97a) Length = 158

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DL I+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLAIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3ILI|A Chain A, Crystal Structure Of E. Coli Hppk(D95a) Length = 158

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR + LDI+ +G   I+++ LTVPH  +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLALDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3HSZ|A Chain A, Crystal Structure Of E. Coli Hppk(F123a) Length = 158

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVPH  +  R  +
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGAM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|3KUG|A Chain A, Crystal Structure Of E. Coli Hppk(H115a) Length = 158

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48  IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
           IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T L
Sbjct: 5   IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
            P ELL   ++IE   GR     R GPR +DLDI+ +G   I+++ LTVP   +  R F+
Sbjct: 65  APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPAYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
           + PL ++    V  D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142

>pdb|2VP8|A Chain A, Structure Of Mycobacterium Tuberculosis Rv1207 Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 12/220 (5%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
           +M I+N TPDSF D G   S  AA   V   +++GAD+ID+G     P   ++  + E+ 
Sbjct: 44  IMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGP-GERVDVDTEIT 102
Query: 273 RLIPVLEAVL-TMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAG 331
           RL+P +E +    P+   +L+SVDT+ ++VA  A   GA ++ND + G +DP M +V A 
Sbjct: 103 RLVPFIEWLRGAYPD---QLISVDTWRAQVAKAACAAGADLIND-TWGGVDPAMPEVAAE 158
Query: 332 LKVPYVAMHMRGD-PST--MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388
                V  H  G  P T   +         V   V S++ +    A  +G+   +++IDP
Sbjct: 159 FGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDP 218
Query: 389 GLGFSKKAEHNLDIL---LGLAASHAPILIGPSRKRFLGE 425
              F K   H L +L     L  +  P+L+  S K  +GE
Sbjct: 219 AHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGE 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	480
2bmb_A	545	Folic acid synthesis protein FOL1; folate biosynth	0.0
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	0.0
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	1e-127
1ad1_A	266	DHPS, dihydropteroate synthetase; transferase, APO	1e-124
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	1e-122
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	1e-121
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	1e-118
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	1e-118
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	1e-112
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	1e-112
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	1e-110
2cg8_A	270	Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dih	6e-55
3qbc_A	161	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	1e-50
1cbk_A	160	Protein (7,8-dihydro-6-hydroxymethylpterin- pyroph	3e-50
1f9y_A	158	HPPK, protein (6-hydroxymethyl-7,8-dihydropterin p	1e-49
2qx0_A	159	7,8-dihydro-6-hydroxymethylpterin- pyrophosphokina	3e-49
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	1e-04

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} Length = 545

 Score =  548 bits (1413), Expect = 0.0
 Identities = 154/542 (28%), Positives = 252/542 (46%), Gaps = 97/542 (17%)

Query: 27  SFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETE 85
           S   S        +   +   +A GSN+GDR  +   ALQL+ +   V +     ++E+E
Sbjct: 2   SHMASMTGGQQMGRGSWKRAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESE 61

Query: 86  PAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE-KDMGRTNGIRHGPRPIDLDILFYGR 144
           P Y  DQ  F+N  V   T L P ELL + KKIE +++ R     +GPR IDLDI+ +  
Sbjct: 62  PMYFKDQTPFMNGCVEVETLLTPSELLKLCKKIEYEELQRVKHFDNGPRTIDLDIVMFLN 121

Query: 145 F-----SIHSDTLTVPHERIWERPFVVAPLLDLLGS------------------------ 175
                  ++   L +PH R+ ER FV+ PL +L+                          
Sbjct: 122 SAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHLHPVTAEPIVDHLKQLYDKQHD 181

Query: 176 SVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSL--------KTSVMGILNLTPDSFSDG 227
                  +      G E           L +++          T +M I N TPDSFSDG
Sbjct: 182 EDTLWKLVPLPYRSGVEPRFLKFKTATKLDEFTGETNRITVSPTYIMAIFNATPDSFSDG 241

Query: 228 GK-FQSVEAAVSQVRLMISEG-----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAV 281
           G+ F  +E+ ++ +  +  +      + +ID+G  STRP + + S E+E+ R IP+++A+
Sbjct: 242 GEHFADIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAI 301

Query: 282 LTMPEM--EGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVA 338
               E+  +  ++S+DT+ S VA EA+  G  I+ND+S G  D +M+ V+A   ++ Y+ 
Sbjct: 302 RESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYIL 361

Query: 339 MHMRGDPSTMQNEENLQYDD----------------------------VCKQVASELYSK 370
            H RGD STM       Y++                            + + V  E+  +
Sbjct: 362 SHTRGDISTMNR--LAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGER 419

Query: 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA------------------- 411
              A  +G+  W+I+IDPGLGF+K  + NL I+  +                        
Sbjct: 420 YIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNM 479

Query: 412 PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDS 471
           P+L+GPSRK+F+G I     A +RD AT A + + +  G+++VRVH++++   ++KL D+
Sbjct: 480 PVLLGPSRKKFIGHITKDVDAKQRDFATGAVVASCIGFGSDMVRVHDVKNCSKSIKLADA 539

Query: 472 ML 473
           + 
Sbjct: 540 IY 541

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* Length = 442

 Score =  526 bits (1356), Expect = 0.0
 Identities = 129/449 (28%), Positives = 193/449 (42%), Gaps = 27/449 (6%)

Query: 27  SFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETE 85
              H      V   S   + +I +G+N G  + N + A+  ++    + I R   LY ++
Sbjct: 5   HHHHHHSSGLVPRGSHMVQYIIGIGTNSGFTIENIHLAITALESQQNIRIIRKASLYSSK 64

Query: 86  PAYVTDQP-----RFLNSAVRGVTKLGPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDI 139
                D P     RFLN+AV+  + L P ELL +LK IE  +GR  N     PR IDLDI
Sbjct: 65  AVLKEDAPKEWDIRFLNTAVKISSSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDI 124

Query: 140 LFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLP 199
           L      + +D LT+PH+ +  R F +APLL+L              ++  KE  +    
Sbjct: 125 LAAEDLILETDKLTIPHKELINRSFALAPLLELSKGWHHPKYVEWDLNIRLKELGEI--- 181

Query: 200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTR 259
               L      T  MGI+NL+  SFSDG            +  +I  GA++IDIGA+ST+
Sbjct: 182 --VKLKQTLANTIRMGIVNLSNQSFSDGNFDD--NQRKLNLDELIQSGAEIIDIGAESTK 237

Query: 260 PMATKISAEKELERLIPVLEAVLTM--PEMEGKLVSVDTFYSKVASEAVGKGAHI---VN 314
           P A  IS E+E  +L   LE   +     +   LVS+DT   +V  + + K   I   +N
Sbjct: 238 PDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAKHHDIIWMIN 297

Query: 315 DVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDA 374
           DV    ++    +++A     YV +H  G     Q    L  ++    V   +  K +  
Sbjct: 298 DVECNNIEQ-KAQLIAKYNKKYVIIHNLGITDRNQ---YLDKENAIDNVCDYIEQKKQIL 353

Query: 375 ELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPILIGPSRKRFLGEICNRP 430
              GI    I  D G GF KK++    +L  +           L+G SRK  +  +    
Sbjct: 354 LKHGIAQQNIYFDIGFGFGKKSDTARYLLENIIEIKRRLELKALVGHSRKPSVLGLTKDS 413

Query: 431 SADERDPATIASITAGVLGGANIVRVHNI 459
           +    D AT            +I+RVH I
Sbjct: 414 NLATLDRATRELSRKLEKLDIDIIRVHKI 442

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... Length = 297

 Score =  371 bits (956), Expect = e-127
 Identities = 106/306 (34%), Positives = 173/306 (56%), Gaps = 19/306 (6%)

Query: 173 LGSSVESDTKLGGESLIGKEGMKR--VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKF 230
           +GSS           +     MK    L  G    + + KT +MGILN+TPDSFSDGG +
Sbjct: 1   MGSSHHHH-HHSSGLVPRGSHMKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSY 59

Query: 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290
             V+AAV   + M  EGA +IDIG +STRP   K+S E+E++R++P+++AV         
Sbjct: 60  NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV---KL 116

Query: 291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQN 350
            +S+DT+ ++VA +A+  GAHI+ND+   + +P + +V A   VP + MH R +      
Sbjct: 117 PISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNM----- 171

Query: 351 EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASH 410
                Y ++   + ++LY  ++ A+ +G+    II+DPG+GF+K  E NL+ +  L   +
Sbjct: 172 ----NYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLN 227

Query: 411 A---PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVK 467
               P+L+G SRK F+G + + P  +ER   T A++  G+  G   VRVH++++     K
Sbjct: 228 VLGYPVLLGTSRKSFIGHVLDLP-VEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAK 286

Query: 468 LCDSML 473
           + D+M+
Sbjct: 287 MMDAMI 292

>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A* Length = 266

 Score =  361 bits (928), Expect = e-124
 Identities = 104/273 (38%), Positives = 156/273 (57%), Gaps = 17/273 (6%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT +MGILN+TPDSFSDGGKF +VE+AV++V+ M+ EGAD+ID+G  STRP    I+ E+
Sbjct: 2   KTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE 61

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           EL R++PV+EA++         +SVDTF S+VA   +  G  I+ND  AG  D  M++VV
Sbjct: 62  ELNRVLPVVEAIVG----FDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVV 117

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      V MH              + + V +++ + L ++   A+++GIP+ +I +DPG
Sbjct: 118 AKYDAEIVLMHNGNGN---------RDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 168

Query: 390 LGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPS-ADERDPATIASITA 445
           +GF+K      +++  L    A   P+L+  SRKRF  E+    +   ERD  T A+   
Sbjct: 169 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 228

Query: 446 GVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
           G++ G   VRVHN+  N    K  D +     +
Sbjct: 229 GIMKGVRAVRVHNVELNAKLAKGIDFLKENENA 261

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Length = 280

 Score =  356 bits (915), Expect = e-122
 Identities = 106/276 (38%), Positives = 161/276 (58%), Gaps = 13/276 (4%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
              VMG+LN+T DSFSDGG +  ++ AV     M + GA ++D+G +S+RP AT++    
Sbjct: 5   PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAV 64

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           E  R+IPV++ +      +G  VS+DT  + VA  A+  GA +VNDVS G+ DP M  ++
Sbjct: 65  ETSRVIPVVKELAA----QGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLL 120

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A   VP+V MH R   +   +   ++Y +V  +V ++L + V DA  +G+   R+++DPG
Sbjct: 121 AEADVPWVLMHWRAVSADTPH-VPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPG 179

Query: 390 LGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPS-----ADERDPATIA 441
           LGF+K A+HN  IL  L    A   P+L+G SRKRFLG +   P       D RD AT  
Sbjct: 180 LGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAV 239

Query: 442 SITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK 477
                 L GA  VRVH++R ++DA+K+ ++ +   +
Sbjct: 240 ISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAER 275

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A Length = 282

 Score =  355 bits (913), Expect = e-121
 Identities = 109/288 (37%), Positives = 169/288 (58%), Gaps = 13/288 (4%)

Query: 194 MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDI 253
           MK  L       D S    VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+
Sbjct: 1   MK--LFAQGTSLDLS-HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDV 57

Query: 254 GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV 313
           G +STRP A ++S E+EL+R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+
Sbjct: 58  GGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHII 114

Query: 314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRD 373
           ND+ +   +P   +  A   +P   MHM+G+P TMQ     +YDDV  +V      ++  
Sbjct: 115 NDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQE--APKYDDVFAEVNRYFIEQIAR 171

Query: 374 AELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRP 430
            E +GI   ++++DPG GF K   HN  +L  LA  H    P+L+G SRK  +G++ N  
Sbjct: 172 CEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG 231

Query: 431 SADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
              ER   ++A      + GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 232 -PSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* Length = 294

 Score =  348 bits (896), Expect = e-118
 Identities = 101/293 (34%), Positives = 151/293 (51%), Gaps = 16/293 (5%)

Query: 194 MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDI 253
           +   L  G     +  +  VMGILN TPDSFSDGG+F + + A+ +   MI+EGAD++DI
Sbjct: 7   LPAPLQCGRFELTFE-RPLVMGILNATPDSFSDGGRFLARDDALRRAERMIAEGADLLDI 65

Query: 254 GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV 313
           G +STRP A  +  ++EL R+IP++EA+  +       +S+DT+   V   A+  GA ++
Sbjct: 66  GGESTRPGAPPVPLDEELARVIPLVEALRPL----NVPLSIDTYKPAVMRAALAAGADLI 121

Query: 314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRD 373
           ND+   +  P     V        AMHM G+P TMQ      Y DV   V   L ++ + 
Sbjct: 122 NDIWGFR-QPGAIDAVRDGNSGLCAMHMLGEPQTMQ-VGEPDYGDVVTDVRDFLAARAQA 179

Query: 374 AELSGIPAWRIIIDPGLGFSK-KAEHNLDIL-----LGLAASHA---PILIGPSRKRFLG 424
              +G+ A RI +DPG GF K   + N  +L        A       PIL G SRK  LG
Sbjct: 180 LRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLG 239

Query: 425 EICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK 477
            +       ER  A++A+    V  GA IVRVH++   +DA+ + +++    +
Sbjct: 240 AVIGGKPPLERVAASVAAALCAVERGAAIVRVHDVAATVDALSVWNAVRAAAR 292

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* Length = 294

 Score =  346 bits (891), Expect = e-118
 Identities = 111/282 (39%), Positives = 173/282 (61%), Gaps = 14/282 (4%)

Query: 196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA 255
           R L + +   D   +  ++G+LNLTPDSFSDGG++   E A+ + R M++EGAD++D+GA
Sbjct: 15  RTLWLRDRALDLD-RVRLLGVLNLTPDSFSDGGRYLDPERALERAREMVAEGADILDLGA 73

Query: 256 QSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND 315
           +STRP A  +  E+E  RL+PVLEAVL++    G  VSVDT   +VA EA+  GAH++ND
Sbjct: 74  ESTRPGAAPVPVEEEKRRLLPVLEAVLSL----GVPVSVDTRKPEVAEEALKLGAHLLND 129

Query: 316 VSAGQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDA 374
           V+  + D  M  + A   V  V MHM   DP+TM    + +Y DV  +V + L ++ R A
Sbjct: 130 VTGLR-DERMVALAARHGVAAVVMHMPVPDPATMMA--HARYRDVVAEVKAFLEAQARRA 186

Query: 375 ELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPS 431
             +G+P  ++++DPG GF K  EHNL +L  L    A   P+L+G SRKR +GE+     
Sbjct: 187 LSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVED 244

Query: 432 ADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSML 473
             +R   ++A+    V+ G  ++RVH++R + +A+ + +++ 
Sbjct: 245 PAQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEALY 286

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* Length = 314

 Score =  332 bits (854), Expect = e-112
 Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 38/302 (12%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT + GI+N+TPDSFSDGG+F ++E A+ Q R +I+EGA M+DIG +STRP ++ +  E+
Sbjct: 9   KTVICGIINVTPDSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEE 68

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           E++R++PV++A+    ++   L+S+DT+ S+VA  A+  GA +VND++    D  M  VV
Sbjct: 69  EIQRVVPVIKAIRKESDV---LISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVV 125

Query: 330 AGLKVPYVAMHMR------------------GDPSTMQNEENLQYDDVC--KQVASELYS 369
           A  +   V M                     G   T +  E   ++ +   + + +    
Sbjct: 126 AEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEE--ELADFETLPIEELMEAFFER 183

Query: 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEI 426
            +  A  +GI    I++DPG+GF    + NL +L  L   H    PI +G SRKRF+  I
Sbjct: 184 ALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINI 243

Query: 427 CNRPS----------ADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476
                             RD A+    +     G  +VRVH++  +  AV++  ++    
Sbjct: 244 LEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAIRLAD 303

Query: 477 KS 478
           ++
Sbjct: 304 EA 305

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} Length = 318

 Score =  332 bits (854), Expect = e-112
 Identities = 80/273 (29%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           +  +M I+N TPDSF D G   S  AA   V   +++GAD+ID+G     P   ++  + 
Sbjct: 41  RALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGE-RVDVDT 99

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           E+ RL+P +E +        +L+SVDT+ ++VA  A   GA ++ND   G  DP M +V 
Sbjct: 100 EITRLVPFIEWLR--GAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGV-DPAMPEVA 156

Query: 330 AGLKVPYVAMHMRGD-PSTMQN--EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386
           A      V  H  G  P T             V   V S++ +    A  +G+   +++I
Sbjct: 157 AEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI 216

Query: 387 DPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPATIASI 443
           DP   F K   H L +L  +A       P+L+  S K  +GE        ER   T+A+ 
Sbjct: 217 DPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLGVD-LTERLEGTLAAT 275

Query: 444 TAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476
                 GA + RVH +      +++  S+   R
Sbjct: 276 ALAAAAGARMFRVHEVAATRRVLEMVASIQGVR 308

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} Length = 314

 Score =  327 bits (840), Expect = e-110
 Identities = 88/274 (32%), Positives = 142/274 (51%), Gaps = 20/274 (7%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM----ATKI 265
           + +VMGI+N++P+SF        + +A+     M+ EGAD++DIG ++T P         
Sbjct: 27  EPAVMGIINVSPNSFYHP--HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSP 84

Query: 266 SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDM 325
           S + EL+RL+PV++A+    +   +L+SVDT   +V  EAV  GA ++ND  A QLD  +
Sbjct: 85  STQIELDRLLPVIDAIK---KRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDAL 141

Query: 326 YKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385
              V+ LK P   MH   +     +     +    + V  EL   ++  + +GI   RII
Sbjct: 142 -TTVSALKTPVCLMHFPSETRKPGSTT---HFYFLQSVKKELQESIQRCKKAGISEDRII 197

Query: 386 IDPGLG---FSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPAT 439
           IDPG G   + K    N  +L  L    A   P+L G SRK  +G++ N+P  + R   +
Sbjct: 198 IDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQP-PENRLFGS 256

Query: 440 IASITAGVLGGANIVRVHNIRDNLDAVKLCDSML 473
           IA+    V  GA+I+R H+++   +A+K+     
Sbjct: 257 IAADVLAVYHGASIIRTHDVKATREAIKIATYTR 290

>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae} Length = 270

 Score =  183 bits (467), Expect = 6e-55
 Identities = 49/144 (34%), Positives = 77/144 (53%)

Query: 29  FHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAY 88
             S    +V +  ++Q   IA+GSN+GD+  N  +A+  ++  G++I +   +  TEP  
Sbjct: 105 HLSLDTCSVTIHRRKQRAFIALGSNMGDKQANLKQAIDKLRARGIHILKESSVLATEPWG 164

Query: 89  VTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIH 148
             +Q  F N  V   T L   +LL  L  IE ++GR   +  GPR IDLD+LF     ++
Sbjct: 165 GVEQDSFANQVVEVETWLPAQDLLETLLAIESELGRVREVHWGPRLIDLDLLFVEDQILY 224

Query: 149 SDTLTVPHERIWERPFVVAPLLDL 172
           +D L +PH  I ER FV+  L ++
Sbjct: 225 TDDLILPHPYIAERLFVLESLQEI 248

>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus} Length = 161

 Score =  168 bits (429), Expect = 1e-50
 Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 41  SQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSA 99
           S   +  + +GSN+GDR    N+A++++ +  G++++    +YET P   T+QP FLN  
Sbjct: 2   SHMIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLC 61

Query: 100 VRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERI 159
           V   T L   +LL    K E+ + R    R GPR +D+DIL YG   I    L+VPH R+
Sbjct: 62  VEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRM 121

Query: 160 WERPFVVAPLLDL 172
            ER FV+ PL D+
Sbjct: 122 NERAFVLIPLNDI 134

>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1 Length = 160

 Score =  167 bits (426), Expect = 3e-50
 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
             IA+GSN+   +   + AL+ + +L   ++      Y+++P    DQP ++N+  +  T
Sbjct: 4   AYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIET 63

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPF 164
           +L P +LL  L++IE + GR    R G R +DLDIL YG   I ++ LT+PH  +  R F
Sbjct: 64  ELSPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREF 123

Query: 165 VVAPLLDL 172
           V+ PL ++
Sbjct: 124 VIVPLFEI 131

>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} SCOP: d.58.30.1 PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A ... Length = 158

 Score =  166 bits (422), Expect = 1e-49
 Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
             IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T
Sbjct: 3   AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALET 62

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRH-GPRPIDLDILFYGRFSIHSDTLTVPHERIWERP 163
            L P ELL   ++IE   GR       GPR +DLDI+ +G   I+++ LTVPH  +  R 
Sbjct: 63  SLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRG 122

Query: 164 FVVAPLLDL 172
           F++ PL ++
Sbjct: 123 FMLWPLFEI 131

>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis} Length = 159

 Score =  164 bits (419), Expect = 3e-49
 Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
           V IA+GSN+   L   + A + +  L    +     LY T+P    DQP FLN+ V   T
Sbjct: 4   VYIALGSNLAMPLQQVSAAREALAHLPRSRLVACSPLYRTKPLGPQDQPDFLNAVVALDT 63

Query: 105 KLGPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERP 163
            L P +LL   + IE++ GR     R GPR +DLDI+ YG   I +D LT+PH  +  R 
Sbjct: 64  SLPPEQLLDHTQAIERNQGRVRKEQRWGPRTLDLDIMLYGDQVIKTDRLTIPHYGLKARE 123

Query: 164 FVVAPLLDL 172
           F++ PL D+
Sbjct: 124 FMLYPLADI 132

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* Length = 310

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 39/266 (14%), Positives = 87/266 (32%), Gaps = 41/266 (15%)

Query: 214 MGILNLTPDSFSDG--GKFQSV-EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE 270
           + + +  P  + D     F+ V    V+  +  +  GAD++ +   S  P     S  + 
Sbjct: 51  LEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAEL 110

Query: 271 LERLIPVLEAV-LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
            E    V +A+ + +  +   +   D     V  EA+     +++  +       +    
Sbjct: 111 AEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYK-PIVATC 169

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
                  VA            + NL         + +L   + +     +   RII+DP 
Sbjct: 170 MVHGHSVVASAP--------LDINL---------SKQLNIMIMEM---NLAPNRIIMDPL 209

Query: 390 LG-FSKKAEHNLDILLG--LAASHA------PILIGPSRKRFLGEICNRPSADERDPATI 440
           +G      E++  I+    L A         P++    ++ +  +    P   E     +
Sbjct: 210 IGALGYGIEYSYSIIERMRLGALTGDKILAMPVVCFIGQEAWKAKEAKDPEVAEWGDYAL 269

Query: 441 ASI-------TAGVLGGANIVRVHNI 459
            +I        A +  G ++  + + 
Sbjct: 270 RAIHWETVTTVALIQAGGHLFVMRHP 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 59/386 (15%), Positives = 121/386 (31%), Gaps = 110/386 (28%)

Query: 3   IFNLLLPTR-RGVGAVMKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNF 61
           +F  LL  +   V   ++      Y F  S     ++ + ++  ++  M     DRL N 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 62  NEALQLMKKLGVNITR-------HGCLYETEPA-YVTDQPRFLNSAVRGVTKLGPHEL-L 112
           N   Q+  K   N++R          L E  PA  V          + GV   G   + L
Sbjct: 123 N---QVFAKY--NVSRLQPYLKLRQALLELRPAKNVL---------IDGVLGSGKTWVAL 168

Query: 113 GVLK--KIEKDMGRTNGIRHGPRPIDLDILFY---GRFSIHSDTLTVPHERIWERPFVVA 167
            V    K++  M     I            F+      +     L    E + +  + + 
Sbjct: 169 DVCLSYKVQCKMD--FKI------------FWLNLKNCNSPETVL----EMLQKLLYQID 210

Query: 168 PLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDG 227
           P          +  KL   S+  +  ++R      LL     +  ++ +L     +  + 
Sbjct: 211 PNWTSRSDHSSN-IKLRIHSI--QAELRR------LLKSKPYENCLL-VL----LNVQN- 255

Query: 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQ---STR--PMATKISAEKELERLIPVLEAVL 282
                            ++  +  ++  +   +TR   +   +SA       +      L
Sbjct: 256 -----------------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 283 TMPEMEGKLVS-VDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341
           T  E++  L+  +D     +  E +               +P         ++  +A  +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVL-------------TTNP--------RRLSIIAESI 337

Query: 342 RGDPSTMQNEENLQYDDVCKQVASEL 367
           R   +T  N +++  D +   + S L
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 69/489 (14%), Positives = 137/489 (28%), Gaps = 163/489 (33%)

Query: 1   MNIFNLLLPTRRGVGAV---MKGCRATCYSFFHSSPETTVEVQSQEQEVVIAMGSNV--- 54
           + +   LL  R     +   + G   T            ++V     +V   M   +   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWV---------ALDV-CLSYKVQCKMDFKIFWL 187

Query: 55  --GDRLCNFNEA-LQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL----- 106
              +  CN  E  L++++KL   I      + +   + ++    ++S    + +L     
Sbjct: 188 NLKN--CNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 107 GPHELLGVL-----KKIEKDMGRTNGIRHGPRPIDLD--ILFYGRFSIHSDTLTVPHERI 159
             + LL VL      K                  +L   IL   RF   +D L+      
Sbjct: 243 YENCLL-VLLNVQNAKAWNAF-------------NLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 160 -----WERPFVVAPLLDLLGSSVE-SDTKLGGE---------SLIGKEGMKRVLPIGNLL 204
                         +  LL   ++     L  E         S+I +      +  G   
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-----IRDGLAT 343

Query: 205 WD-------WSLKTSV-MGILNLTPDS----FSDGGKFQS---VEAAV----------SQ 239
           WD         L T +   +  L P      F     F     +   +          S 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 240 VRLMISEGAD--MIDIGAQSTR--------PMATKISAEKELERLIPVLEAV-------- 281
           V +++++     +++   + +          +  K+  E  L R I  ++          
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDS 461

Query: 282 -------------------LTMPEMEGKLVSVDTFY-------SKV--ASEAVGKGAHIV 313
                              L   E   ++      +        K+   S A      I+
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 314 NDVSAGQL----------DPDMYKVVAGLK--VPYVAMHMRGDPST------MQNEENLQ 355
           N +   QL          DP   ++V  +   +P +  ++     T      +  E+   
Sbjct: 522 NTLQ--QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 356 YDDVCKQVA 364
           +++  KQV 
Sbjct: 580 FEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 50/285 (17%), Positives = 85/285 (29%), Gaps = 93/285 (32%)

Query: 249 DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP-EMEGKLVSVDTFYSKVASEAVG 307
           D  D+     + + +K    +E++        ++     + G L    T  SK       
Sbjct: 34  DCKDV-QDMPKSILSK----EEIDH-------IIMSKDAVSGTLRLFWTLLSK------- 74

Query: 308 KGAHIVNDVSAGQLDPDMYK-VVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS- 365
               +V       L  + YK +++ +K           PS M      Q D +       
Sbjct: 75  -QEEMVQKFVEEVLRIN-YKFLMSPIKTEQR------QPSMMTRMYIEQRDRLYNDNQVF 126

Query: 366 --------ELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGP 417
                   + Y K+R A L   PA  ++ID  LG  K        +         +    
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSYKVQCKM 180

Query: 418 SRKRF---LGEICNRPSAD---------ERDPATIASITAGVLGGANI-VRVHNIRDN-- 462
             K F   L   CN P            + DP    + T+     +NI +R+H+I+    
Sbjct: 181 DFKIFWLNLKN-CNSPETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELR 235

Query: 463 --------------LDAVKLCDS-------------MLTRRKSLA 480
                         L  V   ++             + TR K + 
Sbjct: 236 RLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVT 278

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* Length = 323

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 54/239 (22%)

Query: 247 GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV 306
           GAD+I +      P     S ++ +  +  VL+AV  +P     LV V     +   E +
Sbjct: 94  GADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVP-----LVVVGCGDVEKDHEVL 147

Query: 307 GKGAHIVNDVSA--GQLDPDMYKVVAGL----KVPYVAMHMRGDPSTMQNEENLQYDDVC 360
              A      +   G  + + YK +       K   +A            + N+      
Sbjct: 148 EAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSP--------LDINI------ 193

Query: 361 KQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLG--LAASHA------ 411
                +L   + +     +P   I+IDP +G      E++  I+    L A         
Sbjct: 194 ---CKQLNILINEM---NLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSM 247

Query: 412 PILIGPSRKRFLGEICNRPSAD--------ERDP---ATIASITAGVLGGANIVRVHNI 459
           P++     + +  +  + P ++        ER     A  A+  A +  GA+I+ + + 
Sbjct: 248 PVICTVGYEAWRAKEASAPVSEYPGWGKETERGILWEAVTAT--ALLQAGAHILLMRHP 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
2bmb_A	545	Folic acid synthesis protein FOL1; folate biosynth	100.0
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	100.0
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	100.0
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	100.0
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	100.0
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	100.0
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	100.0
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	100.0
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	100.0
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	100.0
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	100.0
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	100.0
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	100.0
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	100.0
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	100.0
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	100.0
3qbc_A	161	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	100.0
1cbk_A	160	Protein (7,8-dihydro-6-hydroxymethylpterin- pyroph	100.0
1f9y_A	158	HPPK, protein (6-hydroxymethyl-7,8-dihydropterin p	100.0
2qx0_A	159	7,8-dihydro-6-hydroxymethylpterin- pyrophosphokina	100.0
3ip0_A	158	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	100.0
2cg8_A	270	Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dih	100.0
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	100.0
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	99.91
2h9a_A	445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	99.89
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	99.17
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	97.89
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	97.83
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	97.79
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	97.79
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	97.72
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	97.54
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	97.54
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	97.37
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	97.37
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	97.35
3ble_A	337	Citramalate synthase from leptospira interrogans;	97.32
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	97.17
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	97.15
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	97.07
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	97.06
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	97.05
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	97.0
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	96.92
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	96.87
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	96.79
4g9p_A	406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	96.56
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.49
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	96.39
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.36
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	96.32
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	96.27
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	96.25
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.2
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	96.15
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.8
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	95.69
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	95.64
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	95.6
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	95.45
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	95.42
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	95.35
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	95.11
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	94.94
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	94.76
1viz_A	240	PCRB protein homolog; structural genomics, unknown	94.75
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.64
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	94.5
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	94.48
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	94.36
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	94.26
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	94.13
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	93.92
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	93.9
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	93.83
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	93.81
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	93.8
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	93.76
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	93.63
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	93.58
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	93.43
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.34
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	93.13
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	92.92
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	92.85
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	92.75
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	92.47
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	92.24
2nwr_A	267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	91.91
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	91.89
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	91.85
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.72
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	91.57
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	91.57
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	91.54
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	91.52
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	91.18
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	91.15
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	91.14
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	91.12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	91.11
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	91.04
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	90.69
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	90.68
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	90.55
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	90.5
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	90.48
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	90.47
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	90.46
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	90.4
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	90.29
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	90.16
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	90.15
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	90.02
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	90.0
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	89.97
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	89.88
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	89.78
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	89.44
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	89.32
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	89.21
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	89.2
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	89.14
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	89.01
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	89.0
3kws_A	287	Putative sugar isomerase; structural genomics, joi	88.98
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	88.89
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	88.77
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	88.74
2inf_A	359	URO-D, UPD, uroporphyrinogen decarboxylase; (alpha	88.61
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	88.53
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	88.48
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	88.47
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	88.37
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	88.34
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	88.31
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	88.26
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	88.13
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	88.03
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	87.9
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	87.89
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	87.85
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	87.66
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	87.61
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	87.5
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	87.39
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	87.29
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	87.28
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	87.14
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	87.01
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	86.93
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	86.91
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	86.88
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	86.75
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	86.75
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	86.62
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	86.59
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	86.51
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	86.36
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	86.36
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	86.31
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	86.27
3cyv_A	354	URO-D, UPD, uroporphyrinogen decarboxylase; alpha/	86.18
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	86.17
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	86.16
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	85.95
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	85.79
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	85.78
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	85.73
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	85.6
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	85.33
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	85.27
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	85.21
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	85.1
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	85.01
2o56_A	407	Putative mandelate racemase; dehydratase, structur	84.99
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	84.97
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	84.87
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	84.84
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	84.82
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	84.68
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	84.55
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	84.53
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	84.28
2eja_A	338	URO-D, UPD, uroporphyrinogen decarboxylase; dimer,	84.2
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	84.19
4exq_A	368	UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid	83.94
1j93_A	353	UROD, uroporphyrinogen decarboxylase; beta barrel,	83.93
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	83.76
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	83.68
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	83.45
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	83.23
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	83.06
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	83.0
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	83.0
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	82.69
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	82.64
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	82.42
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	82.26
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	82.19
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	82.11
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	82.03
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	81.92
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	81.91
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	81.41
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	81.39
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	81.32
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	80.52
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	80.49
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	80.31
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	80.3
1p1j_A	533	Inositol-3-phosphate synthase; 1L-MYO-inositol 1-p	80.25
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	80.23
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	80.1
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	80.02

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-116  Score=936.64  Aligned_cols=433  Identities=34%  Similarity=0.574  Sum_probs=382.2

Q ss_pred             ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHH-
Q 038230           43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEK-  120 (480)
Q Consensus        43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~-  120 (480)
                      ++++|||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||+|+|+|+.++|+|+|.+|++.||+||+ 
T Consensus        18 ~~~~~iaLGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~yeT~P~g~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~   97 (545)
T 2bmb_A           18 WKRAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVETLLTPSELLKLCKKIEYE   97 (545)
T ss_dssp             CEEEEEEEEECSSSHHHHHHHHHHHHHHSTTEEEEEECCEEEECCSSCTTSCCEEEEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEcCCcccHHHHHHHHHHHHHhCCCCceeEecCcEEeCCCCCCCCCCceeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 6788999999999999999999999999999999999999999999999 


Q ss_pred             HcCCCCCCCCCCCccchhhccc-----CCeeeeCCCccccccccccchhhhhhhhhhhC-CCcccccc------ccCCcc
Q 038230          121 DMGRTNGIRHGPRPIDLDILFY-----GRFSIHSDTLTVPHERIWERPFVVAPLLDLLG-SSVESDTK------LGGESL  188 (480)
Q Consensus       121 ~~GR~r~~~~~~r~iDiDIl~~-----~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~-~~~~p~~~------~~~~~~  188 (480)
                      ++||+|..||||||||||||+|     ++.++++++|+||||++++|+|||.||+||+| +++||...      +..+..
T Consensus        98 ~~GR~R~~rwgpRtlDLDIL~y~~~~~~~~~~~~~~L~lPHP~~~eR~FVL~PL~ei~p~~~~~P~~~~~i~~ll~~l~~  177 (545)
T 2bmb_A           98 ELQRVKHFDNGPRTIDLDIVMFLNSAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHLHPVTAEPIVDHLKQLYD  177 (545)
T ss_dssp             HTTC---------CCEEEEEEEECTTSCBCCEECSSCEESCTTGGGCHHHHHHHTTTSCTTCBCTTTCSBHHHHHHHHHH
T ss_pred             HcCCccccCCCCceeeeeeecccccCCCCeEecCCCCCCCChhhhhCcHHHHHHHHhCcccccCCCCCccHHHHHHhCcc
Confidence            9999999999999999999999     99999999999999999999999999999999 99999511      111111


Q ss_pred             ccc--cCcccccccccc-----------------------ccCCCCCcEEEEEEecCCCCCCCCCccC-CHHHHHHHHHH
Q 038230          189 IGK--EGMKRVLPIGNL-----------------------LWDWSLKTSVMGILNLTPDSFSDGGKFQ-SVEAAVSQVRL  242 (480)
Q Consensus       189 ~q~--~~i~r~~~~~~~-----------------------~~~~~~~~~imGIlN~tpDSFsdgg~~~-~~e~a~~~A~~  242 (480)
                      .+.  +.+++++++++.                       .+.++.+|+||||||+|||||||||+|. +.+.|+++|++
T Consensus       178 ~~~~~~~l~~~~pl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iMGIlNvTPDSFsDGG~~~~~~~~al~~a~~  257 (545)
T 2bmb_A          178 KQHDEDTLWKLVPLPYRSGVEPRFLKFKTATKLDEFTGETNRITVSPTYIMAIFNATPDSFSDGGEHFADIESQLNDIIK  257 (545)
T ss_dssp             TCCGGGCEEEEEEECCCTTSCCEEEEEEEEEC-------CCEEECSCCEEEEEEECSCSSTTTTTTTTTCHHHHHHHHHH
T ss_pred             cccccccceeeccccccccccccchhccccccccccccccccccCCCCeEEEEEeCCCCCCcCCCcCcCCHHHHHHHHHH
Confidence            000  234444544311                       1124578999999999999999999998 99999999999


Q ss_pred             HHHcC-----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230          243 MISEG-----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM--PEMEGKLVSVDTFYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       243 ~v~~G-----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~--~~~~~~pISIDT~~~~v~~aaL~~G~~iINd  315 (480)
                      |+++|     ||||||||+|||||+++||++||++|++|+|+++++.  ....++|||||||+++|+++||++|++||||
T Consensus       258 mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~VaeaAl~aGadIIND  337 (545)
T 2bmb_A          258 LCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKEAIKVGVDIIND  337 (545)
T ss_dssp             HHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHHHHHTTCCEEEE
T ss_pred             HHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHHHHHcCCCEEEe
Confidence            99999     9999999999999999999999999999999999861  1113799999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHhc-CCCEEEEcCCCCCCccccccccchh--------------------------hHHHHHHHHHH
Q 038230          316 VSAGQLDPDMYKVVAGL-KVPYVAMHMRGDPSTMQNEENLQYD--------------------------DVCKQVASELY  368 (480)
Q Consensus       316 Vsg~~~d~~m~~l~~~~-~~~vVlmh~~g~p~~~~~~~~~~~~--------------------------~v~~ev~~~l~  368 (480)
                      |||+..|++|++++++| +|+||+||++|+|+||++++.|..+                          +++.++..+|.
T Consensus       338 Vsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~l~  417 (545)
T 2bmb_A          338 ISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIG  417 (545)
T ss_dssp             TTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHHHH
T ss_pred             CCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccchHHHHHHHHHH
Confidence            99998789999999999 9999999999999999987654311                          29999999999


Q ss_pred             HHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---cc----------------CCCcEEEeeccccccccccCC
Q 038230          369 SKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AA----------------SHAPILIGPSRKRFLGEICNR  429 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~----------------~g~Pil~G~SrKsfi~~v~g~  429 (480)
                      +++++|.++||++|+||+|||+||+|+.+||+++|+++   +.                +|+|+|+|+|||||||.++|.
T Consensus       418 ~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~~~~~~~~~~~~~~~~~~~g~PvLvG~SRKsFig~l~g~  497 (545)
T 2bmb_A          418 ERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNMPVLLGPSRKKFIGHITKD  497 (545)
T ss_dssp             HHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHTTEEEEEEETTEEEEEECTTCCBEECCTTCHHHHHHHTC
T ss_pred             HHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHHhhhccccccccccccccCCCCEEEEeccHHHHHHhcCC
Confidence            99999999999999999999999999999999999998   33                389999999999999999998


Q ss_pred             CCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          430 PSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       430 ~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      +++.+|+++|++++++|+.+||+|+|||||+|+++|++|++++++.
T Consensus       498 ~~~~~R~~~T~a~~~~a~~~Ga~IvRVHDV~e~~~a~~~~~ai~~~  543 (545)
T 2bmb_A          498 VDAKQRDFATGAVVASCIGFGSDMVRVHDVKNCSKSIKLADAIYKG  543 (545)
T ss_dssp             CSGGGGHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHHC
T ss_pred             CChHHhhHHHHHHHHHHHHCCCcEEEcCCHHHHHHHHHHHHHHHhh
Confidence            6678999999999999999999999999999999999999999753

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*

Probab=100.00  E-value=6.4e-116  Score=916.87  Aligned_cols=413  Identities=30%  Similarity=0.371  Sum_probs=327.8

Q ss_pred             eEEecccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCc-----cceeeeeeeccCCCHH
Q 038230           36 TVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQP-----RFLNSAVRGVTKLGPH  109 (480)
Q Consensus        36 ~~~~~~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~-----~F~N~v~~~~T~l~p~  109 (480)
                      .+.....++++|||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||     +|+|+|+.++|+|+|.
T Consensus        14 ~~~~~~~m~~~~i~LGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~p~g~~~qp~~w~~~FlN~v~~~~T~l~p~   93 (442)
T 3mcm_A           14 LVPRGSHMVQYIIGIGTNSGFTIENIHLAITALESQQNIRIIRKASLYSSKAVLKEDAPKEWDIRFLNTAVKISSSLKPD   93 (442)
T ss_dssp             ------CCEEEEEEEEECSSSHHHHHHHHHHHHHHSTTEEEEEECCCEEECCC----------CCEEEEEEEEEECCCHH
T ss_pred             CCCCCCCccEEEEEEeCCccCHHHHHHHHHHHHhcCCCCceEEeCceEEecCCCCCCCCccCCCCeEEEEEEEEeCCCHH
Confidence            334456789999999999999999999999999988 6788999999999999999999     9999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCC-CCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCccccccccCCcc
Q 038230          110 ELLGVLKKIEKDMGRTN-GIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESDTKLGGESL  188 (480)
Q Consensus       110 ~Ll~~lk~IE~~~GR~r-~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~~~~~~~~~  188 (480)
                      +|++.||+||+++||+| ..||||||||||||+|++.++++++|+||||++++|+|||.||+||+|+++||.....-...
T Consensus        94 ~LL~~l~~IE~~~GR~r~~~~~gpRtiDlDIL~y~~~~~~~~~L~iPHp~~~~R~FVL~PL~ei~p~~~hP~~~~~~~~~  173 (442)
T 3mcm_A           94 ELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAAEDLILETDKLTIPHKELINRSFALAPLLELSKGWHHPKYVEWDLNI  173 (442)
T ss_dssp             HHHHHHHHHHHHC-----------CCCEEEEEECTTCCEECSSCEESCTTGGGCHHHHHHHHHHCTTCCCTTCTTCCHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCcceeeeEEeeCCEEecCCccccCCcchhhChHHHHHHHHhCccCcCCCchhhHHHH
Confidence            99999999999999999 69999999999999999999999999999999999999999999999999999732111110


Q ss_pred             ccccCccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHH
Q 038230          189 IGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAE  268 (480)
Q Consensus       189 ~q~~~i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~  268 (480)
                      + ++....   + ++.++++.+|+||||||+|||||||||  .+.++|+++|++|+++|||||||||+|||||+++|+++
T Consensus       174 ~-~~~~~~---~-~~~~~~~~~~~vMGIlNvTPDSFsDgg--~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~  246 (442)
T 3mcm_A          174 R-LKELGE---I-VKLKQTLANTIRMGIVNLSNQSFSDGN--FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIE  246 (442)
T ss_dssp             H-HHHCC----C-EECSCCCCSSEEEEEEECSSCC-CCCS--SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHH
T ss_pred             h-hcchhh---h-ccccCCCCCceEEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH
Confidence            0 111111   2 566778789999999999999999999  78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcC-CcC-CCCeEEEeCCCHHHHHHHHH--cCCCE-EecCCCCCCCchHHHHHHhcCCCEEEEcCCC
Q 038230          269 KELERLIPVLEAVLTM-PEM-EGKLVSVDTFYSKVASEAVG--KGAHI-VNDVSAGQLDPDMYKVVAGLKVPYVAMHMRG  343 (480)
Q Consensus       269 eE~~rl~~vi~~l~~~-~~~-~~~pISIDT~~~~v~~aaL~--~G~~i-INdVsg~~~d~~m~~l~~~~~~~vVlmh~~g  343 (480)
                      ||++|++|+|++|++. ... .++||||||++|+|+++||+  +|++| ||||+|. .+++|++++++|+|+||+||++|
T Consensus       247 EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~VaeaAL~~~aGa~i~INDVsg~-~d~~m~~v~a~~g~~vVlMh~~G  325 (442)
T 3mcm_A          247 EEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECN-NIEQKAQLIAKYNKKYVIIHNLG  325 (442)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHHHHHHHHHHHGGGCCEEEECCCT-THHHHHHHHHHHTCEEEEECC--
T ss_pred             HHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHHHHHHHHhhCCCCCEEEEcCCCC-CChHHHHHHHHhCCeEEEECCCC
Confidence            9999999999999861 000 28999999999999999999  99999 9999994 58999999999999999999999


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---cc-CCCcEEEeecc
Q 038230          344 DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AA-SHAPILIGPSR  419 (480)
Q Consensus       344 ~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~-~g~Pil~G~Sr  419 (480)
                      .|+|||..   .|+|++.++..+|++++++|.++||++++||+|||+||+|+.+||+++|+++   +. +|+|+|+|+||
T Consensus       326 ~P~tmq~~---~y~dvv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~~~lg~PvLvG~SR  402 (442)
T 3mcm_A          326 ITDRNQYL---DKENAIDNVCDYIEQKKQILLKHGIAQQNIYFDIGFGFGKKSDTARYLLENIIEIKRRLELKALVGHSR  402 (442)
T ss_dssp             -----------------CTHHHHHHHHHHHHHHHTCCGGGEEEECCCC------------CCHHHHHHHHTSEEEECCTT
T ss_pred             CCcccccc---CcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEech
Confidence            99999943   2899999999999999999999999999999999999999999999999998   34 79999999999


Q ss_pred             ccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCCh
Q 038230          420 KRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNI  459 (480)
Q Consensus       420 Ksfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV  459 (480)
                      |||||.++|..++++|+++|+|++++|+.+||+|+|||||
T Consensus       403 Ksfig~~~~~~~~~~R~~gt~a~~~~a~~~Ga~ivRvHDV  442 (442)
T 3mcm_A          403 KPSVLGLTKDSNLATLDRATRELSRKLEKLDIDIIRVHKI  442 (442)
T ss_dssp             CTTTTTCCTTCCHHHHHHHHHHHHHHHTTTTCSEEEESCC
T ss_pred             HHHHHHHcCCCChHHhhHHHHHHHHHHHHCCCCEEecCCC
Confidence            9999999986557899999999999999999999999997

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=100.00  E-value=7.5e-82  Score=620.40  Aligned_cols=255  Identities=39%  Similarity=0.644  Sum_probs=233.7

Q ss_pred             CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      ++|+||||||+|||||||||+|.+.+.|+++|++|+++|||||||||||||||+++|+++||++|+.|+|+.|++.    
T Consensus         5 ~r~~iMGIlNvTPDSFsDGG~~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~----   80 (270)
T 4hb7_A            5 TKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGF----   80 (270)
T ss_dssp             CCCEEEEEEECC----------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTS----
T ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcC----
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999864    


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      ++|||||||+|+|+++||++|++|||||+|+..|++|++++++|+++||+||++|.|+         |++++.++..||.
T Consensus        81 ~v~iSIDT~~~~Va~~al~aGa~iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~---------~~~vv~ev~~~l~  151 (270)
T 4hb7_A           81 DVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNR---------DEPVVEEMLTSLL  151 (270)
T ss_dssp             SSEEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCC---------SSCHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHhccceeccccccccchhHHHHHHHcCCCeEEeccccCCc---------cccchhHHHHHHH
Confidence            8999999999999999999999999999998889999999999999999999998774         5789999999999


Q ss_pred             HHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCC-CCcCcccHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNR-PSADERDPATIASIT  444 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~-~~~~~r~~~t~a~~~  444 (480)
                      ++++.|.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||.++|. .+|++|+++|+++++
T Consensus       152 ~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~~~~lg~PvLvG~SRKsfig~~lg~~~~~~~R~~gt~a~~~  231 (270)
T 4hb7_A          152 AQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTA  231 (270)
T ss_dssp             HHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHHHHTTCSCBEECCTTSHHHHHHHCSCCCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEeCCCCcccccccHHHHHhhHHHHhcCCCCEEEEecHHHHHHHHhCCCCChHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999998   56899999999999999999985 246899999999999


Q ss_pred             HHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          445 AGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       445 ~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      +|+.+||+|+|||||+|+++++++++++++.+
T Consensus       232 ~a~~~Ga~ivRVHDV~e~~~a~~~~~ai~~~~  263 (270)
T 4hb7_A          232 YGIMKGVRAVRVHNVELNAKLAKGIDFLKENE  263 (270)
T ss_dssp             HHHHHTCCEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEeCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998644

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=100.00  E-value=1.8e-77  Score=600.20  Aligned_cols=270  Identities=38%  Similarity=0.603  Sum_probs=245.9

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      |.++++.+++ .+|+||||||+|||||||||+|.+.+.|+++|++|+++||||||||++|||||+++|+++||++|++|+
T Consensus        11 ~~~~~~~~~~-~~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pv   89 (294)
T 2y5s_A           11 LQCGRFELTF-ERPLVMGILNATPDSFSDGGRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPL   89 (294)
T ss_dssp             EEETTEEECC-SSCEEEEEEECCC----------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHH
T ss_pred             hccCCcccCC-CCceEEEEEeCCCCCCCCCCCcCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHH
Confidence            6666777777 469999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccc-cccccch
Q 038230          278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQ-NEENLQY  356 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~-~~~~~~~  356 (480)
                      |+.+++.    ++||||||++|+|+++||++|++||||||+++ +++|++++++|+++||+||++|.|+||+ ..  +.|
T Consensus        90 i~~l~~~----~vpiSIDT~~~~Va~aAl~aGa~iINdVsg~~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~--~~y  162 (294)
T 2y5s_A           90 VEALRPL----NVPLSIDTYKPAVMRAALAAGADLINDIWGFR-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGE--PDY  162 (294)
T ss_dssp             HHHHGGG----CSCEEEECCCHHHHHHHHHHTCSEEEETTTTC-STTHHHHHSSSSCEEEEECCCEETTTTEECC--CCC
T ss_pred             HHHHhhC----CCeEEEECCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCCEEEECCCCCCccccccC--Ccc
Confidence            9999975    89999999999999999999999999999998 8999999999999999999999999997 54  457


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccCh-hHHHHHHHhc---c-----cCCCcEEEeecccccccccc
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKA-EHNLDILLGL---A-----ASHAPILIGPSRKRFLGEIC  427 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~-~~~~~~lr~l---~-----~~g~Pil~G~SrKsfi~~v~  427 (480)
                      +|+++++.++|.+++++|.++||++++||+|||+||+|+. +||+++|+++   +     .+|+|+|+|+|||||||.++
T Consensus       163 ~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~l~  242 (294)
T 2y5s_A          163 GDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVI  242 (294)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTCHHHHTTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEecccHHhhhhc
Confidence            8999999999999999999999999999999999999999 9999999998   5     67999999999999999999


Q ss_pred             CCCCcC-cccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          428 NRPSAD-ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       428 g~~~~~-~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      |.+ +. +|.++|++++++|+.+|++|+|||||+++++|+++++++++.+
T Consensus       243 g~~-~~~~R~~~t~a~~~~a~~~Ga~IvrvHDV~e~~~a~~~~~al~~~~  291 (294)
T 2y5s_A          243 GGK-PPLERVAASVAAALCAVERGAAIVRVHDVAATVDALSVWNAVRAAA  291 (294)
T ss_dssp             TSC-CGGGCHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-chhhhhHHHHHHHHHHHHcCCcEEEcCCHHHHHHHHHHHHHHHhhh
Confidence            976 57 9999999999999999999999999999999999999997543

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2e-77  Score=604.47  Aligned_cols=276  Identities=29%  Similarity=0.404  Sum_probs=209.5

Q ss_pred             cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230          195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL  274 (480)
Q Consensus       195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl  274 (480)
                      ..++.++++.++++ +|+||||||+|||||||||+|.+.+.|+++|++|+++||||||||++||||| ++|+++||++|+
T Consensus        27 ~~~~~~~~~~~~~~-~~~vMGIlNvTPDSFsdgg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG-~~v~~~eEl~Rv  104 (318)
T 2vp8_A           27 AGHSTLCGRPVAGD-RALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPG-ERVDVDTEITRL  104 (318)
T ss_dssp             CCCEEETTEEECSS-SCEEEEEEC--------------CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHH
T ss_pred             ccceeeCCEEcCCC-CcEEEEEEeCCCCcccCCCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC-CCCCHHHHHHHH
Confidence            34456677777774 7999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCC-CCccccccc
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGD-PSTMQNEEN  353 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~-p~~~~~~~~  353 (480)
                      +|+|+.|++..  .++||||||++++|+++||++|++|||||+|++ +++|++++++|+++||+||++|. |+|||+++.
T Consensus       105 ~pvI~~l~~~~--~~vpISIDT~~~~VaeaAl~aGa~iINDVsg~~-d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~  181 (318)
T 2vp8_A          105 VPFIEWLRGAY--PDQLISVDTWRAQVAKAACAAGADLINDTWGGV-DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVS  181 (318)
T ss_dssp             HHHHHHHHHHS--TTCEEEEECSCHHHHHHHHHHTCCEEEETTSSS-STTHHHHHHHHTCEEEEECC-------------
T ss_pred             HHHHHHHHhhC--CCCeEEEeCCCHHHHHHHHHhCCCEEEECCCCC-chHHHHHHHHhCCCEEEECCCCCCccccccccc
Confidence            99999999752  289999999999999999999999999999997 89999999999999999999999 999998654


Q ss_pred             cch--hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccC
Q 038230          354 LQY--DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICN  428 (480)
Q Consensus       354 ~~~--~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g  428 (480)
                      |.+  +|++.++.++|.+++++|.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||+++|
T Consensus       182 y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL~G~SrKsfig~~~g  261 (318)
T 2vp8_A          182 YGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLG  261 (318)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC----------
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCEEEEeCcchhhhhhcC
Confidence            311  89999999999999999999999999999999999999999999999998   5689999999999999999999


Q ss_pred             CCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          429 RPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       429 ~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      ++ +++|+++|++++++|+.+|++|+|||||+++++++++++++++..
T Consensus       262 ~~-~~~r~~~t~a~~~~a~~~Ga~IvRvHDV~e~~~a~~~~~al~~~~  308 (318)
T 2vp8_A          262 VD-LTERLEGTLAATALAAAAGARMFRVHEVAATRRVLEMVASIQGVR  308 (318)
T ss_dssp             ------CHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHTTSS
T ss_pred             CC-hHHhHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHHHHhccC
Confidence            86 689999999999999999999999999999999999999996543

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=100.00  E-value=2.6e-77  Score=598.21  Aligned_cols=269  Identities=41%  Similarity=0.644  Sum_probs=230.4

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~  276 (480)
                      .+.++++.+++ .+|+||||||+|||||||||+|.+.+.|+++|++|+++||||||||++|||||+++|+++||++|++|
T Consensus        16 ~~~~~~~~~~~-~~~~iMGIlNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~p   94 (294)
T 2dqw_A           16 TLWLRDRALDL-DRVRLLGVLNLTPDSFSDGGRYLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLP   94 (294)
T ss_dssp             EEECSSSEEEC-SSCEEEEEEECCC-------------CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHH
T ss_pred             EEeeCCeecCC-CCceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHH
Confidence            35666677777 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC-CCCCccccccccc
Q 038230          277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQ  355 (480)
Q Consensus       277 vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~-g~p~~~~~~~~~~  355 (480)
                      +|+.+++.    ++||||||++++|+++||++|++|||||||+ .+++|++++++|+++||+||++ |.|+|||..+  .
T Consensus        95 vI~~l~~~----~vpiSIDT~~~~Va~aAl~aGa~iINdVsg~-~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~--~  167 (294)
T 2dqw_A           95 VLEAVLSL----GVPVSVDTRKPEVAEEALKLGAHLLNDVTGL-RDERMVALAARHGVAAVVMHMPVPDPATMMAHA--R  167 (294)
T ss_dssp             HHHHHHTT----CSCEEEECSCHHHHHHHHHHTCSEEECSSCS-CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGC--C
T ss_pred             HHHHHHhC----CCeEEEECCCHHHHHHHHHhCCCEEEECCCC-CChHHHHHHHHhCCCEEEEcCCCCCCccccccC--c
Confidence            99999975    8999999999999999999999999999999 6899999999999999999999 9999999864  5


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCc
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSA  432 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~  432 (480)
                      |+|+++++.++|.+++++|.++||+  +||||||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||.++|.+++
T Consensus       168 y~dv~~ev~~~l~~~i~~a~~~Gi~--~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~p~~  245 (294)
T 2dqw_A          168 YRDVVAEVKAFLEAQARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDP  245 (294)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTCS--CEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTCCSG
T ss_pred             cccHHHHHHHHHHHHHHHHHHCCCC--cEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCCCch
Confidence            7899999999999999999999999  999999999999999999999998   45899999999999999999998656


Q ss_pred             CcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          433 DERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       433 ~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      ++|.++|++++++|+.+|++|+|||||+++++|+++++++++.
T Consensus       246 ~~R~~~t~a~~~~a~~~Ga~IvRvHDV~~~~~a~~~~~al~~~  288 (294)
T 2dqw_A          246 AQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEALYGG  288 (294)
T ss_dssp             GGCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHCC-
T ss_pred             hhhHHHHHHHHHHHHHcCCcEEEcCCHHHHHHHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999998643

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=100.00  E-value=2.7e-76  Score=593.73  Aligned_cols=270  Identities=33%  Similarity=0.523  Sum_probs=254.1

Q ss_pred             cccccc-cccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHH
Q 038230          197 VLPIGN-LLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKEL  271 (480)
Q Consensus       197 ~~~~~~-~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~  271 (480)
                      .+.+++ +.++++ +|+||||||+|||||||  +|.+.+.|+++|++|+++||||||||++|||||++    +||++||+
T Consensus        14 ~~~~~~~~~~~~~-~~~vMGIlNvTpDSFsd--~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~   90 (314)
T 3tr9_A           14 HLRLRDDKRIVFS-EPAVMGIINVSPNSFYH--PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIEL   90 (314)
T ss_dssp             EEECTTSCEEEES-SCEEEEEEECSTTCSBC--BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHH
T ss_pred             EEecCCceEecCC-CcEEEEEEeCCCCchhh--ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHH
Confidence            356666 677774 79999999999999999  99999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccc
Q 038230          272 ERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNE  351 (480)
Q Consensus       272 ~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~  351 (480)
                      +|+.|+|+.|++.   .++||||||++|+|+++||++|++|||||||++ +++|++++++|+++||+||++|.|+|||..
T Consensus        91 ~Rv~pvI~~l~~~---~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~-~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~  166 (314)
T 3tr9_A           91 DRLLPVIDAIKKR---FPQLISVDTSRPRVMREAVNTGADMINDQRALQ-LDDALTTVSALKTPVCLMHFPSETRKPGST  166 (314)
T ss_dssp             HHHHHHHHHHHHH---CCSEEEEECSCHHHHHHHHHHTCCEEEETTTTC-STTHHHHHHHHTCCEEEECCCCTTCCTTSS
T ss_pred             HHHHHHHHHHHhh---CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCeEEEECCCCCCcccccc
Confidence            9999999999986   489999999999999999999999999999988 789999999999999999999999999975


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC---CccChhHHHHHHHhc---ccCCCcEEEeecccccccc
Q 038230          352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG---FSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGE  425 (480)
Q Consensus       352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG---f~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~  425 (480)
                      +  .| |+++++.++|++++++|.++||++++||||||+|   |+|+.+||+++|+++   +.+|+|+|+|+|||||||+
T Consensus       167 ~--~y-dvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL~G~SRKsfig~  243 (314)
T 3tr9_A          167 T--HF-YFLQSVKKELQESIQRCKKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIGD  243 (314)
T ss_dssp             C--HH-HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBEECCTTCHHHHH
T ss_pred             c--cc-chHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEEEEechhhhhhh
Confidence            4  57 9999999999999999999999999999999999   999999999999998   5689999999999999999


Q ss_pred             ccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhhh
Q 038230          426 ICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK  477 (480)
Q Consensus       426 v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~~  477 (480)
                      ++|.+ +++|+++|++++++|+++||+|+|||||+|+++|+++++++++..+
T Consensus       244 ~~~~~-~~~R~~~t~a~~~~a~~~Ga~IvRvHDV~e~~~a~~~~~a~~~~~~  294 (314)
T 3tr9_A          244 VLNQP-PENRLFGSIAADVLAVYHGASIIRTHDVKATREAIKIATYTRSVDT  294 (314)
T ss_dssp             HHTCC-GGGCHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHHTC-
T ss_pred             hcCCC-hHHhHHHHHHHHHHHHHcCCcEEEeCChHHHHHHHHHHHHHHhhcc
Confidence            99986 6899999999999999999999999999999999999999987554

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=100.00  E-value=8.6e-76  Score=585.52  Aligned_cols=270  Identities=38%  Similarity=0.633  Sum_probs=256.3

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      |.++++.+++ .+|+||||||+|||||||||++.+.++|+++|++|+++||||||||++|||||+++|+++||++|+.|+
T Consensus         3 ~~~~~~~~~~-~~~~imGilN~TpdSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pv   81 (282)
T 1aj0_A            3 LFAQGTSLDL-SHPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPV   81 (282)
T ss_dssp             EEETTEEEET-TSCEEEEEEECCTTTSCCCCCCTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHH
T ss_pred             eccCCcccCC-CCCEEEEEEeCCCCccccccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHH
Confidence            4455666777 489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      |+.|++.   .++||||||++|+|+++||++|++||||||++ .+++|++++++|+++||+||++|.|+|||+++  .|+
T Consensus        82 i~~l~~~---~~~piSIDT~~~~va~aAl~aGa~iINdvsg~-~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~--~y~  155 (282)
T 1aj0_A           82 VEAIAQR---FEVWISVDTSKPEVIRESAKVGAHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPKTMQEAP--KYD  155 (282)
T ss_dssp             HHHHHHH---CCCEEEEECCCHHHHHHHHHTTCCEEEETTTT-CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCC--CCS
T ss_pred             HHHHHhh---cCCeEEEeCCCHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHhCCeEEEEccCCCCccccccC--ccc
Confidence            9999976   48999999999999999999999999999998 58999999999999999999999999999865  478


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                      |++.++.++|.+++++|.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||+++|++ +++
T Consensus       156 d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k~~~~n~~ll~~l~~~~~~g~P~l~G~Srksfig~~~g~~-~~~  234 (282)
T 1aj0_A          156 DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSE  234 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHHHHHTCC-GGG
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEECccHhHHhhcCCC-HHH
Confidence            9999999999999999999999999999999999999999999999998   458999999999999999999986 689


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          435 RDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      |+++|++++++++.+|++|+|||||+++++|+++++++++.
T Consensus       235 rl~~t~a~~~~a~~~ga~IvrvhdV~~~~~a~~~~~a~~~~  275 (282)
T 1aj0_A          235 RLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSA  275 (282)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999765

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=100.00  E-value=1.3e-75  Score=583.64  Aligned_cols=261  Identities=41%  Similarity=0.672  Sum_probs=234.4

Q ss_pred             CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      .+|+||||||+|||||||||+|.+.+.|+++|++|+++||||||||++|||||+++|+++||++|++|+|+.+++.    
T Consensus         4 ~~~~imgilN~TpDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~----   79 (280)
T 1eye_A            4 APVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ----   79 (280)
T ss_dssp             -CCEEEEEEECSCCTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT----
T ss_pred             CCcEEEEEEeCCCCCcCCCcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC----
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      ++||||||++|+|+++||++|++|||||||++.+++|++++++|+++||+||++|.|+||++++ ..|.+++.++.++|.
T Consensus        80 ~~piSIDT~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~-~~y~dv~~~v~~~l~  158 (280)
T 1eye_A           80 GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVP-VRYGNVVAEVRADLL  158 (280)
T ss_dssp             TCCEEEECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSC-CCCSSHHHHHHHHHH
T ss_pred             CCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcC-cchhHHHHHHHHHHH
Confidence            8999999999999999999999999999998778999999999999999999999999999861 247899999999999


Q ss_pred             HHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeecccccccccc----C--CCCcCcccHHH
Q 038230          369 SKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEIC----N--RPSADERDPAT  439 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~----g--~~~~~~r~~~t  439 (480)
                      +++++|.++||++++||||||+||+|+.+||+++|+++   +.+|+|+|+|+||||||+.++    |  .+ +++|.++|
T Consensus       159 ~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfi~~~~~~~~g~~~~-~~~R~~~t  237 (280)
T 1eye_A          159 ASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRP-TDGRDTAT  237 (280)
T ss_dssp             HHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHTCCSSSCCCC-GGGGHHHH
T ss_pred             HHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEEEEecchHHHHhhhccccCCCCC-cccchHHH
Confidence            99999999999999999999999999999999999998   468999999999999999999    5  54 67899999


Q ss_pred             HHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          440 IASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       440 ~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      ++++++|+.+|++|+|||||+++++++++++++++.
T Consensus       238 ~a~~~~a~~~Ga~IvrvhdV~~~~~a~~~~~al~~~  273 (280)
T 1eye_A          238 AVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGA  273 (280)
T ss_dssp             HHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999753

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=100.00  E-value=9.2e-75  Score=586.08  Aligned_cols=263  Identities=34%  Similarity=0.540  Sum_probs=228.2

Q ss_pred             CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      .+|+||||||+|||||||||+|.+.+.|+++|++|+++||||||||++|||||+++|+++||++|++|+|++|++.   .
T Consensus         8 ~~~~iMGIlNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~---~   84 (314)
T 2vef_A            8 AKTVICGIINVTPDSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKE---S   84 (314)
T ss_dssp             CCCEEEEEEECCC---------CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHH---C
T ss_pred             CCceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhh---C
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999976   4


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCC--CCCc----------------ccc
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRG--DPST----------------MQN  350 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g--~p~~----------------~~~  350 (480)
                      ++||||||++|+|+++||++|++|||||||++.|++|++++++|+|+||+||++|  .|.+                ||+
T Consensus        85 ~vpiSIDT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~  164 (314)
T 2vef_A           85 DVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEE  164 (314)
T ss_dssp             CCEEEEECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--
T ss_pred             CceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCccccccccccccccccccc
Confidence            8999999999999999999999999999999878999999999999999999964  6766                343


Q ss_pred             ccccchhhH-HHH-HHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeecccccccc
Q 038230          351 EENLQYDDV-CKQ-VASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGE  425 (480)
Q Consensus       351 ~~~~~~~~v-~~e-v~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~  425 (480)
                      .  ..|+++ +++ +.++|++++++|.++||++++||||||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||.
T Consensus       165 ~--~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l~~~g~PvL~G~SrKsfig~  242 (314)
T 2vef_A          165 L--ADFETLPIEELMEAFFERALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVIN  242 (314)
T ss_dssp             C--HHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEEECSSCHHHHH
T ss_pred             c--cccccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHhhcCCCCEEEEeCccHHHhh
Confidence            3  347787 888 58999999999999999999999999999999999999999998   4589999999999999999


Q ss_pred             cc---CCC-Cc------CcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          426 IC---NRP-SA------DERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       426 v~---g~~-~~------~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      ++   |++ +|      .+|..+|++++++|+.+|++|+|||||+++++++++++++++..
T Consensus       243 ~~~~~g~~~~p~tel~~~~R~~~t~a~~~~a~~~Ga~IvRvHDV~~~~~a~~~~~al~~~d  303 (314)
T 2vef_A          243 ILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAIRLAD  303 (314)
T ss_dssp             HHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHTCC
T ss_pred             hhccccccCCcccccchhhhhHHHHHHHHHHHHcCCcEEEeCCHHHHHHHHHHHHHHhccc
Confidence            98   441 23      48999999999999999999999999999999999999997644

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=100.00  E-value=1.4e-73  Score=572.73  Aligned_cols=265  Identities=38%  Similarity=0.666  Sum_probs=248.4

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      |.++++.++++.+|+||||||+|||||||||+|.+.++|+++|++|+++||||||||++|||||+++++++||++|++|+
T Consensus        27 ~~~~~~~~~~~~~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~Rvvpv  106 (297)
T 1tx2_A           27 LRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPM  106 (297)
T ss_dssp             EEETTEEECSSSSCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHH
T ss_pred             eccCCeecCCCCCCEEEEEEeCCCCccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHH
Confidence            55677788887789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230          278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD  357 (480)
Q Consensus       278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~  357 (480)
                      |+.+++.   .++||||||++|+|+++||++|++|||||++++.+++|++++++|+++||+||++|.|+         |+
T Consensus       107 I~~l~~~---~~vpiSIDT~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~---------y~  174 (297)
T 1tx2_A          107 IQAVSKE---VKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMN---------YR  174 (297)
T ss_dssp             HHHHHHH---SCSCEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCC---------CS
T ss_pred             HHHHHhc---CCceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCC---------cc
Confidence            9999975   38999999999999999999999999999998778999999999999999999999885         57


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCc
Q 038230          358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                      ++++++.++|.+++++|.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||+++|++ +++
T Consensus       175 d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pvl~G~Srksfig~~~g~~-~~~  253 (297)
T 1tx2_A          175 NLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLP-VEE  253 (297)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCC-GGG
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEeccchhhhhhcCCC-HHH
Confidence            8999999999999999999999999999999999999999999999998   457999999999999999999986 689


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          435 RDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      |+++|++++++|+.+|++|+|||||+|+++|++|++++++.
T Consensus       254 r~~~t~a~~~~a~~~ga~IvrvhdV~e~~~a~~~~~a~~~~  294 (297)
T 1tx2_A          254 RLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK  294 (297)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998753

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=100.00  E-value=1.6e-56  Score=444.88  Aligned_cols=238  Identities=16%  Similarity=0.175  Sum_probs=212.1

Q ss_pred             CCCCcEEEE-EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230          207 WSLKTSVMG-ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP  285 (480)
Q Consensus       207 ~~~~~~imG-IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~  285 (480)
                      ++.++.|+| |+|+|||||||||++.+.+.++++|++|+++||||||||++|+        .+||++|+.|+|+.|++. 
T Consensus         6 ~~~~~~iigEilN~Tpdsf~dg~~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~--------~~eE~~rv~~vi~~l~~~-   76 (271)
T 2yci_X            6 GSHMFIMIGERINGMFKDIREAILNKDPRPIQEWARRQAEKGAHYLDVNTGPT--------ADDPVRVMEWLVKTIQEV-   76 (271)
T ss_dssp             CCCCCEEEEEEEETTSHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEECCSC--------SSCHHHHHHHHHHHHHHH-
T ss_pred             CCCCCEEEEEecCCChhhHHHhhhhCCHHHHHHHHHHHHHCCCCEEEEcCCcC--------chhHHHHHHHHHHHHHHh-
Confidence            456788999 9999999999999999999999999999999999999999983        357999999999999986 


Q ss_pred             cCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhH
Q 038230          286 EMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDV  359 (480)
Q Consensus       286 ~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v  359 (480)
                        .++||||||++|+|+++||++  |++||||||+++ +  ++|++++++||+++|+||+  +|+|.|+           
T Consensus        77 --~~~pisIDT~~~~v~~aal~a~~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~-----------  142 (271)
T 2yci_X           77 --VDLPCCLDSTNPDAIEAGLKVHRGHAMINSTSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDA-----------  142 (271)
T ss_dssp             --CCCCEEEECSCHHHHHHHHHHCCSCCEEEEECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSH-----------
T ss_pred             --CCCeEEEeCCCHHHHHHHHHhCCCCCEEEECCCCc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCH-----------
Confidence              489999999999999999999  999999999986 6  8999999999999999999  8888763           


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc---ccC---CCcEEEeeccccccccccCCCCc
Q 038230          360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL---AAS---HAPILIGPSRKRFLGEICNRPSA  432 (480)
Q Consensus       360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l---~~~---g~Pil~G~SrKsfi~~v~g~~~~  432 (480)
                       +++.++|+++++.|.++||++++||+|||+|| +|+.++|+++|+++   +..   ++|+++|+|||||     |.+ +
T Consensus       143 -~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Snksf-----g~~-~  215 (271)
T 2yci_X          143 -NDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSNVSQ-----KCP-D  215 (271)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGGGGT-----TCS-S
T ss_pred             -HHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCcccc-----CCc-h
Confidence             45678999999999999999999999999999 99999999999987   333   5999999999999     554 4


Q ss_pred             CcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          433 DERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       433 ~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      .+|..+|+++++++...|+.|+|+||+ ++++++++++++++.
T Consensus       216 r~~l~~t~~~~a~~~g~~~~iv~~~d~-~~~~~~~~~~al~~~  257 (271)
T 2yci_X          216 RPLINRTYLVMAMTAGLDAAIMDVDDD-ALVDAAATAHILLNK  257 (271)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECTTCH-HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhCCcEEECCCcH-HHHHHHHHHHHHhCC
Confidence            556666665555555566789999999 899999999999653

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=100.00  E-value=6.7e-55  Score=439.71  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=213.5

Q ss_pred             CCCCcE-EEEEEecCCCCCCCC--CccCCH-HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 038230          207 WSLKTS-VMGILNLTPDSFSDG--GKFQSV-EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVL  282 (480)
Q Consensus       207 ~~~~~~-imGIlN~tpDSFsdg--g~~~~~-e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~  282 (480)
                      +..+|+ +|||+|+||||||||  |++.+. +.++++|++|+++||||||||++||||++.+++++||++    +|+.++
T Consensus        43 ~~~~p~i~m~I~n~tpdsf~d~i~~~~~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~----vV~~v~  118 (310)
T 2h9a_B           43 MPNPPRFALEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAE----VCKAVA  118 (310)
T ss_dssp             CCSCCEEEEEEESSCCSSCCHHHHGGGTTTTTCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHH----HHHHHH
T ss_pred             CCCCCeEEEEEeeCCCcccchhhhhhhccHHHHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHH----HHHHHH
Confidence            456788 999999999999999  999987 899999999999999999999999999999999999998    455566


Q ss_pred             cCCcCCCCeEEE-eC----CCHHHHHHHHHcCCC---EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccccccc
Q 038230          283 TMPEMEGKLVSV-DT----FYSKVASEAVGKGAH---IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENL  354 (480)
Q Consensus       283 ~~~~~~~~pISI-DT----~~~~v~~aaL~~G~~---iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~  354 (480)
                      +.   .++|||| ||    ++|+|+++||++|++   |||||++++ +++|++++++||++||+||++            
T Consensus       119 ~~---~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~-~~~~~~~aa~~g~~vv~m~~~------------  182 (310)
T 2h9a_B          119 DA---IDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDN-YKPIVATCMVHGHSVVASAPL------------  182 (310)
T ss_dssp             HH---CSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTT-HHHHHHHHHHHTCEEEEECSS------------
T ss_pred             Hh---CCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCc-cHHHHHHHHHhCCCEEEEChh------------
Confidence            54   3899999 99    999999999999997   999999985 799999999999999999974            


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChh---HHHHHHHh--c---ccCCCcEEEeeccc-----
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAE---HNLDILLG--L---AASHAPILIGPSRK-----  420 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~---~~~~~lr~--l---~~~g~Pil~G~SrK-----  420 (480)
                         |     .+++.+++++|.++||++++||+|||+| |+++.+   +|++++|+  +   +.+|+|+|+|+|||     
T Consensus       183 ---d-----v~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~~al~~~~~lg~P~l~g~SrK~~~~~  254 (310)
T 2h9a_B          183 ---D-----INLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRLGALTGDKILAMPVVCFIGQEAWKAK  254 (310)
T ss_dssp             ---C-----HHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHTTCGGGCSCBEECHHHHHTTSH
T ss_pred             ---H-----HHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHHhhhhhhhcCCCCEEEEccCcccccc
Confidence               1     1678999999999999999999999999 585544   56999999  4   46799999999999     


Q ss_pred             -cccccccCCCCcCcccHH-HHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHH
Q 038230          421 -RFLGEICNRPSADERDPA-TIASITAGVLGGANIVRVHNIRDNLDAVKLCDSML  473 (480)
Q Consensus       421 -sfi~~v~g~~~~~~r~~~-t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~  473 (480)
                       ||++.+++..++++|..+ +++++++++.+||+|+|||||+++++++++++++.
T Consensus       255 es~i~~~~~~g~~~~R~~~~~~a~a~~~~~~Ga~ivrvHdv~~~~~~~~~~~al~  309 (310)
T 2h9a_B          255 EAKDPEVAEWGDYALRAIHWETVTTVALIQAGGHLFVMRHPKSLAEVKEHLKRIL  309 (310)
T ss_dssp             HHHCSCCGGGCCHHHHHHHHHHHHHHHHHHHTCCEEEECCHHHHHHHHHHHHHHC
T ss_pred             cchhhhcccCCChHHcchhHHHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHHh
Confidence             999987422136889988 89899999999999999999999999999999985

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=100.00  E-value=3.5e-55  Score=433.51  Aligned_cols=232  Identities=14%  Similarity=0.164  Sum_probs=197.9

Q ss_pred             EEEE-EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          212 SVMG-ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       212 ~imG-IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      .|.| -||+|||||||||++.+.+.++++|++|+++||||||||+     ++.+++++||++|++|+|+.   .   .++
T Consensus         2 ~~iGErlNvTpdsFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIg~-----g~~~v~~~ee~~rvv~~i~~---~---~~~   70 (262)
T 1f6y_A            2 LIIGERINGMFGDIKRAIQERDPAPVQEWARRQEEGGARALDLNV-----GPAVQDKVSAMEWLVEVTQE---V---SNL   70 (262)
T ss_dssp             EEEECCSBTTSHHHHHHHHHTCHHHHHHHHHHHHHHTCSEEEEBC-----C----CHHHHHHHHHHHHHT---T---CCS
T ss_pred             cEEeecccCCchhHHHhhhcCCHHHHHHHHHHHHHCCCcEEEECC-----CCCCCChHHHHHHHHHHHHH---h---CCC
Confidence            5677 7999999999999999999999999999999999999998     44678899999999998865   3   389


Q ss_pred             eEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCCc--hHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHH
Q 038230          291 LVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLDP--DMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVA  364 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d~--~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~  364 (480)
                      ||||||++|+|+++||++  |++|||||||+. ++  +|++++++|++++|+||+  +|.|+|+++            +.
T Consensus        71 pisIDT~~~~v~~aAl~a~~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~------------~~  137 (262)
T 1f6y_A           71 TLCLDSTNIKAIEAGLKKCKNRAMINSTNAER-EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDT------------RL  137 (262)
T ss_dssp             EEEEECSCHHHHHHHHHHCSSCEEEEEECSCH-HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHH------------HH
T ss_pred             eEEEeCCCHHHHHHHHhhCCCCCEEEECCCCc-ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHH------------HH
Confidence            999999999999999999  999999999974 55  899999999999999999  789988754            34


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc---cc-C--CCcEEEeeccccccccccCCCCcCcccH
Q 038230          365 SELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL---AA-S--HAPILIGPSRKRFLGEICNRPSADERDP  437 (480)
Q Consensus       365 ~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l---~~-~--g~Pil~G~SrKsfi~~v~g~~~~~~r~~  437 (480)
                      +++++++++|.++||++++||+|||+| |+++.++|+++|+++   +. +  |+|+|+|+|||||     |.+ +.+|+.
T Consensus       138 ~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksf-----g~~-~~~~l~  211 (262)
T 1f6y_A          138 AFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQ-----NCQ-NRPLIN  211 (262)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGT-----TCS-SHHHHH
T ss_pred             HHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcC-----CCC-HHHHHH
Confidence            788999999999999999999999999 899989999998887   33 4  9999999999999     554 456666


Q ss_pred             HHHHHHHHHHHcCCcEEEcCCh-HHHHHHHHHHHHHHhh
Q 038230          438 ATIASITAGVLGGANIVRVHNI-RDNLDAVKLCDSMLTR  475 (480)
Q Consensus       438 ~t~a~~~~a~~~Ga~IlRvHdV-~e~~~al~~~~ai~~~  475 (480)
                      +|++  ++|+..|+++.|+|++ .++++++++++++.+.
T Consensus       212 ~t~~--~~a~~~g~~~~iv~~~d~~~~~~~~~~~al~~~  248 (262)
T 1f6y_A          212 RTFL--AMAMACGLMSAIADACDEALIETAATAEILLNQ  248 (262)
T ss_dssp             HHHH--HHHHHTTCCEEEECTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHH--HHHHHHhCCeEEECcCcHHHHHHHHHHHHHhCC
Confidence            6654  6677777655555554 3599999999999643

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.1e-51  Score=408.69  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=200.4

Q ss_pred             cCCCCCcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 038230          205 WDWSLKTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVL  282 (480)
Q Consensus       205 ~~~~~~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~  282 (480)
                      ++.+.++.++| .+|+| |||||||+++.+++.++++|++|+++||||||||+     ++.+++++||++|++|+|+.++
T Consensus         6 ~~~~~~~~iIGEriNvTg~~sf~~~~~~~~~~~a~~~A~~~v~~GAdiIDIg~-----g~~~v~~~eem~rvv~~i~~~~   80 (300)
T 3k13_A            6 VKPEINFVNIGERCNVAGSRKFLRLVNEKKYDEALSIARQQVEDGALVIDVNM-----DDGLLDARTEMTTFLNLIMSEP   80 (300)
T ss_dssp             ---CTTCEEEEEEEETTTCHHHHHHHHTTCHHHHHHHHHHHHHTTCSEEEEEC-----CCTTSCHHHHHHHHHHHHHTCH
T ss_pred             eCCCCCcEEEEEeccCCCCHHHHHHHhcCCHHHHHHHHHHHHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHHHHhh
Confidence            34456799999 99999 99999999999999999999999999999999998     4667899999999999998876


Q ss_pred             cCCcCCCCeEEEeCCCHHHHHHHHH--cCCCEEecCCCCCCCc---hHHHHHHhcCCCEEEEcC--CCCCCccccccccc
Q 038230          283 TMPEMEGKLVSVDTFYSKVASEAVG--KGAHIVNDVSAGQLDP---DMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQ  355 (480)
Q Consensus       283 ~~~~~~~~pISIDT~~~~v~~aaL~--~G~~iINdVsg~~~d~---~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~  355 (480)
                      +.   .++||||||++++|+++||+  +|++||||||++..++   +|++++++||++||+||+  +|+|+||+++    
T Consensus        81 ~~---~~vpisIDT~~~~V~eaaL~~~~Ga~iINdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~----  153 (300)
T 3k13_A           81 EI---ARVPVMIDSSKWEVIEAGLKCLQGKSIVNSISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARK----  153 (300)
T ss_dssp             HH---HTSCEEEECSCHHHHHHHHHHCSSCCEEEEECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHH----
T ss_pred             hc---CCCeEEEeCCCHHHHHHHHHhcCCCCEEEeCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHH----
Confidence            54   48999999999999999999  7999999999987666   899999999999999999  7899988653    


Q ss_pred             hhhHHHHHHHHHHHHHHHH-HHCCCCCCCEEEecCCC-CccChhH----HHHHHHhc---c-cC-CCcEEEeeccccccc
Q 038230          356 YDDVCKQVASELYSKVRDA-ELSGIPAWRIIIDPGLG-FSKKAEH----NLDILLGL---A-AS-HAPILIGPSRKRFLG  424 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a-~~~Gi~~~~IilDPgiG-f~k~~~~----~~~~lr~l---~-~~-g~Pil~G~SrKsfi~  424 (480)
                              .+++++.++.| .++||++++||+|||+| |+|+.++    |+++|+++   + .+ |+|+++|+|||||  
T Consensus       154 --------~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSf--  223 (300)
T 3k13_A          154 --------IEVCERAYRLLVDKVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSF--  223 (300)
T ss_dssp             --------HHHHHHHHHHHHHHTCCCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGG--
T ss_pred             --------HHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccc--
Confidence                    24445555554 89999999999999997 9999888    99998887   4 44 9999999999999  


Q ss_pred             cccCCC-CcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          425 EICNRP-SADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       425 ~v~g~~-~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                         |+| ++.+|.+.|.++.++|++.|.++.++|=
T Consensus       224 ---glp~~~~~R~~~n~~fl~~ai~~Gld~~Ivn~  255 (300)
T 3k13_A          224 ---SFRGNNYIREAMHAVFLYHAIQQGMDMGIVNP  255 (300)
T ss_dssp             ---GGTTCHHHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ---cCCCCcchhHHHHHHHHHHHHHcCCCEEecCc
Confidence               554 1246999999999999999999888875

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=100.00  E-value=3.2e-49  Score=428.18  Aligned_cols=237  Identities=14%  Similarity=0.218  Sum_probs=212.3

Q ss_pred             ccCCCCCcEEEEE-EecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 038230          204 LWDWSLKTSVMGI-LNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV  281 (480)
Q Consensus       204 ~~~~~~~~~imGI-lN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l  281 (480)
                      .+.+ .++.|||+ +|+| ||||||||++.+.++++++|++|+++||||||||     ||+.+++++||++|++|+|+..
T Consensus       309 ~~~~-~~~~iiGer~N~Tg~dsf~~~~~~~~~~~a~~~A~~~v~~GAdiIDIg-----pg~~~v~~~ee~~rvv~~i~~~  382 (566)
T 1q7z_A          309 LVTF-DHFVVIGERINPAGRKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVN-----FGIESQIDVRYVEKIVQTLPYV  382 (566)
T ss_dssp             EEES-SSCEEEEEEECCTTCHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEE-----CSSGGGSCHHHHHHHHHHHHHH
T ss_pred             eecc-ccceEEEEEecCCCChhHHHHhhcCCHHHHHHHHHHHHHCCCCEEEEC-----CCCCCCCHHHHHHHHHHHHHhh
Confidence            3344 67999998 9999 9999999999999999999999999999999999     7888899999999999999443


Q ss_pred             HcCCcCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCC-CCCccccccccch
Q 038230          282 LTMPEMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRG-DPSTMQNEENLQY  356 (480)
Q Consensus       282 ~~~~~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g-~p~~~~~~~~~~~  356 (480)
                            .++||||||++++|+++||++  |++||||||+++ +  ++|++++++||++||+||++| +|+|        |
T Consensus       383 ------~~vpisIDT~~~~v~eaal~~~~G~~iINdis~~~-~~~~~~~~~~~~~g~~vV~m~~~~~~p~t--------~  447 (566)
T 1q7z_A          383 ------SNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDE-EELEMKINLLKKYGGTLIVLLMGKDVPKS--------F  447 (566)
T ss_dssp             ------TCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCH-HHHHHHHHHHHHHCCEEEEESCSSSCCCS--------H
T ss_pred             ------CCceEEEeCCCHHHHHHHHHhcCCCCEEEECCcch-hhHHHHHHHHHHhCCeEEEEeCCCCCcCC--------H
Confidence                  389999999999999999999  999999999987 7  899999999999999999998 7765        3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC---CCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCC
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL---GFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRP  430 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi---Gf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~  430 (480)
                      ++    +.++++++++.|.++||+ ++||+|||+   ||+|   +|+++|+++   +.+|+|+++|+|||||+     .+
T Consensus       448 ~~----~~~~l~~~~~~a~~~Gi~-~~IilDPg~~~igfgk---~~~~~l~~~~~~~~~g~p~l~G~Snksf~-----~~  514 (566)
T 1q7z_A          448 EE----RKEYFEKALKILERHDFS-DRVIFDPGVLPLGAEG---KPVEVLKTIEFISSKGFNTTVGLSNLSFG-----LP  514 (566)
T ss_dssp             HH----HHHHHHHHHHHHHHTTCG-GGEEEECCCCCTTTTC---CHHHHHHHHHHHHHTTCEECCBGGGGSTT-----ST
T ss_pred             HH----HHHHHHHHHHHHHHCCCC-CcEEEeCCCCcccCcH---HHHHHHHHHHHHHhCCCCEEEEeCccccc-----CC
Confidence            33    678999999999999999 999999999   9999   888888887   45699999999999996     33


Q ss_pred             CcCcccHHHHHHHHHHHHcCCcEEEcCChH-HHHHHHHHHHHHHhhhh
Q 038230          431 SADERDPATIASITAGVLGGANIVRVHNIR-DNLDAVKLCDSMLTRRK  477 (480)
Q Consensus       431 ~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~-e~~~al~~~~ai~~~~~  477 (480)
                       +.+|+.+|++  ++|+.+|++|+||||++ ++++++++++++++..+
T Consensus       515 -~~~~l~~t~a--~~a~~~G~~i~rvh~~~~~~~~~i~~~~~l~~~~~  559 (566)
T 1q7z_A          515 -DRSYYNTAFL--VLGISKGLSSAIMNPLDETLMKTLNATLVILEKKE  559 (566)
T ss_dssp             -THHHHHHHHH--HHHHHTTCCEEEECTTCHHHHHHHHHHHHHTTSCC
T ss_pred             -HHHHHHHHHH--HHHHHcCCCEEEECCCcHHHHHHHHHHHHHhCCCc
Confidence             4567766665  89999999999999999 79999999999976543

>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}

Probab=100.00  E-value=6e-46  Score=340.11  Aligned_cols=140  Identities=38%  Similarity=0.607  Sum_probs=135.8

Q ss_pred             ccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHH
Q 038230           41 SQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE  119 (480)
Q Consensus        41 ~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE  119 (480)
                      +.++++|||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.|++||
T Consensus         2 ~~M~~v~i~LGSNlGd~~~~l~~A~~~L~~~~~~~v~~~S~~yeT~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE   81 (161)
T 3qbc_A            2 SHMIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTE   81 (161)
T ss_dssp             CCCEEEEEEEEECSSSHHHHHHHHHHHHHHSTTEEEEEECCCEEECCSSSSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred             CcccEEEEEEecCccCHHHHHHHHHHHHhcCCCCceEEECCEEEECCCCCCCCCcceEEEEEEEeCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999986 668899999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          120 KDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       120 ~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +++||+|..||||||||||||+||+.++++++|+||||++++|+|||.||+||+|+++||.
T Consensus        82 ~~~GR~R~~r~gpRtlDlDIL~y~~~~~~~~~L~lPHP~~~eR~FVL~PL~eiap~~~hP~  142 (161)
T 3qbc_A           82 ECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPR  142 (161)
T ss_dssp             HHHHSCSCGGGCCCCCEEEEEEETTCCEEETTEEESCTTGGGCHHHHHHHHHHHTTCEETT
T ss_pred             HHhCCCCCCcCCCceEeEEEEeeCCEEecCCCcccCCcchhhChHHHHHHHHhCcCCccCC
Confidence            9999999999999999999999999999999999999999999999999999999999996

>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1

Probab=100.00  E-value=2.8e-45  Score=335.89  Aligned_cols=138  Identities=33%  Similarity=0.582  Sum_probs=134.0

Q ss_pred             ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHH
Q 038230           43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKD  121 (480)
Q Consensus        43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~  121 (480)
                      ++++|||||||+||+.+|+++|++.|+++ +..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.||+||++
T Consensus         1 m~~~~i~LGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~   80 (160)
T 1cbk_A            1 MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENE   80 (160)
T ss_dssp             CEEEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeccchHHHHHHHHHHHHHhhCCCCcceEecccEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999999997 66889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          122 MGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       122 ~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +||+|..||||||||||||+||+.++++++|+||||++++|+|||.||+||+|++.||.
T Consensus        81 ~GR~r~~r~gpRtlDlDIL~y~~~~~~~~~L~lPHp~~~eR~FVL~PL~ei~p~~~~P~  139 (160)
T 1cbk_A           81 QGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPN  139 (160)
T ss_dssp             TTCCBCSTTSCBSCEEEEEEETTCCEESSSCEESCGGGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             cCCCCCCCCCCceeeEeeeccCCeEECCCCceecCcChhhChHHHHHHHHhCcCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999995

>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...

Probab=100.00  E-value=3.6e-45  Score=334.52  Aligned_cols=137  Identities=37%  Similarity=0.568  Sum_probs=133.1

Q ss_pred             eeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHc
Q 038230           44 QEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDM  122 (480)
Q Consensus        44 ~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~  122 (480)
                      +++|||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.||+||+++
T Consensus         1 ~~~~i~LGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~   80 (158)
T 1f9y_A            1 TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ   80 (158)
T ss_dssp             CEEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEecCccCHHHHHHHHHHHHhcCCCCceeEECCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence            3799999999999999999999999987 678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          123 GRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       123 GR~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      ||+|. .||||||||||||+||+.++++++|+||||++++|+|||.||+||+|+++||.
T Consensus        81 GR~r~~~~~gpRtlDlDIL~y~~~~~~~~~L~lPHp~~~eR~FVL~PL~eiap~~~~P~  139 (158)
T 1f9y_A           81 GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPD  139 (158)
T ss_dssp             TCCCCSSTTCCCSCEEEEEEETTCCEECSSCEESCTTGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             CCCCCCCCCCCceEeEEEEeeCCEEecCCCccccCcChhhChHHHHHHHHhCcCCCCCC
Confidence            99998 99999999999999999999999999999999999999999999999999994

>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}

Probab=100.00  E-value=2.5e-45  Score=335.83  Aligned_cols=138  Identities=37%  Similarity=0.551  Sum_probs=133.8

Q ss_pred             ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHH
Q 038230           43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKD  121 (480)
Q Consensus        43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~  121 (480)
                      ++++|||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.||+||++
T Consensus         1 M~~~~i~LGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~   80 (159)
T 2qx0_A            1 MIRVYIALGSNLAMPLQQVSAAREALAHLPRSRLVACSPLYRTKPLGPQDQPDFLNAVVALDTSLPPEQLLDHTQAIERN   80 (159)
T ss_dssp             CEEEEEEEEECSSSCHHHHHHHHHHHHTCTTEEEEEECCCEEECCCSSSCCCCEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCchhhHHHHHHHHHHHHhcCCCCceEEecCcEEeCCCCCCCCcccceEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999999997 56889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          122 MGRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       122 ~GR~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +||+|. .||||||||||||+||+.++++++|+||||++++|+|||.||+||+|+++||.
T Consensus        81 ~GR~r~~~r~gpRtlDlDIL~y~~~~~~~~~L~lPHp~~~eR~FVL~PL~ei~p~~~~P~  140 (159)
T 2qx0_A           81 QGRVRKEQRWGPRTLDLDIMLYGDQVIKTDRLTIPHYGLKAREFMLYPLADIAPDLIFPD  140 (159)
T ss_dssp             HHHTTTCBTTSCCSCEEEEEEETTCCEESSSCEESCTTGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             cCCCCCCCCCCCceeEEeeeccCCeEeCCCCcccCCcChhhChHHHHHHHHhCcCCCCCC
Confidence            999998 99999999999999999999999999999999999999999999999999995

>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...

Probab=100.00  E-value=1.6e-44  Score=330.59  Aligned_cols=136  Identities=38%  Similarity=0.572  Sum_probs=131.8

Q ss_pred             eEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcC
Q 038230           45 EVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMG  123 (480)
Q Consensus        45 ~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~G  123 (480)
                      .||||||||+||+.+|+++|++.|++. +..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.||+||+++|
T Consensus         2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~~~~v~~~S~~YeT~p~g~~~qp~FlN~vv~~~T~l~p~~LL~~l~~IE~~~G   81 (158)
T 3ip0_A            2 VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQG   81 (158)
T ss_dssp             EEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEecchhhHHHHHHHHHHHHHcCCCCcEEEEeeEEEeCCCCCCcccchheeeeeeccCCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999987 6688999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          124 RTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       124 R~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      |+|. .+|||||||||||+|++.++++++|+||||++++|+|||.||+||+|+++||.
T Consensus        82 R~r~~~~~gpRtiDlDIl~y~~~~~~~~~L~lPHP~~~~R~FVL~PL~eI~P~~~hP~  139 (158)
T 3ip0_A           82 RVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPD  139 (158)
T ss_dssp             CCCCSSTTCCCSCEEEEEEETTCCEECSSCEESCTTGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             CCcCcccCCCccHhhhhhccCCEEEecCccCcCCCChhhCchHHHHHHHHCCCCCCCC
Confidence            9996 78999999999999999999999999999999999999999999999999994

>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}

Probab=100.00  E-value=4.2e-44  Score=355.07  Aligned_cols=179  Identities=28%  Similarity=0.392  Sum_probs=141.4

Q ss_pred             cccccccccccCcccccccc--------ccccccc---ccCCCceeEEecccceeEEEEeCCCcccHHHHHHHHHHHHHh
Q 038230            2 NIFNLLLPTRRGVGAVMKGC--------RATCYSF---FHSSPETTVEVQSQEQEVVIAMGSNVGDRLCNFNEALQLMKK   70 (480)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~   70 (480)
                      +.|+|+|.++..++....-.        ..++|..   -.+..++++++....+++|||||||+||+.+|+++|++.|++
T Consensus        67 ~~f~LiE~lA~~Ia~~ll~~~~~v~~V~V~v~Kp~api~~~~~~v~Vei~R~~~~~~i~lGsN~gd~~~~l~~A~~~L~~  146 (270)
T 2cg8_A           67 TSEDLIETVAYKLVERTFESYPLVQEMKLELKKPWAPVHLSLDTCSVTIHRRKQRAFIALGSNMGDKQANLKQAIDKLRA  146 (270)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHCTTCCEEEEEEEETTCSCCSCCSCEEEEEEEECEEEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhcCCceEEEEEEeeccccccccccccccccccccceEEEecCCCCCCHHHHHHHHHHHHhc
Confidence            46999999988887433221        1122222   146778999999999999999999999999999999999998


Q ss_pred             cCCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCCCCCCCCCCCccchhhcccCCeeeeCC
Q 038230           71 LGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSD  150 (480)
Q Consensus        71 ~~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~  150 (480)
                      .+..++.+|++|+|+|||+.+||+|+|+|+.++|+++|.+|++.|++||+++||+|..||||||||||||+||+.+++++
T Consensus       147 ~~~~~~~~S~~y~t~p~g~~~q~~f~N~v~~~~t~l~p~~ll~~l~~iE~~~GR~r~~~~gpRtlDlDil~~~~~~~~~~  226 (270)
T 2cg8_A          147 RGIHILKESSVLATEPWGGVEQDSFANQVVEVETWLPAQDLLETLLAIESELGRVREVHWGPRLIDLDLLFVEDQILYTD  226 (270)
T ss_dssp             TTCEEEEECCCBC----------CCEEEEEEEEECSCHHHHHHHHHHHHHHTTC----------CEEEEEEETTCCCBCS
T ss_pred             cCCeeEEecCCEecCCCCCCCCccceEEEEEEecCCCHHHHHHHHHHHHHHcCCCCCCCCCCcceeEeeeccCCeEeCCC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccchhhhhhhhhhhCCCcccc
Q 038230          151 TLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       151 ~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +|+||||++++|+|||.||+||+|++.||.
T Consensus       227 ~L~lPHp~~~~R~FVl~PL~ei~p~~~~p~  256 (270)
T 2cg8_A          227 DLILPHPYIAERLFVLESLQEIAPHFIHPI  256 (270)
T ss_dssp             SCBSSCTTGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             CcccCCcChhhCcHHHHHHHHhCcCCcCCC
Confidence            999999999999999999999999999995

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=100.00  E-value=1e-39  Score=329.81  Aligned_cols=232  Identities=15%  Similarity=0.151  Sum_probs=188.6

Q ss_pred             CCcEEEEEEecCCC------CCCCCCccCCHHHHHHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 038230          209 LKTSVMGILNLTPD------SFSDGGKFQSVEAAVSQVRLMI-SEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV  281 (480)
Q Consensus       209 ~~~~imGIlN~tpD------SFsdgg~~~~~e~a~~~A~~~v-~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l  281 (480)
                      .+...|+|.|..||      ||+++ ++.   ++.++|++|+ ++|||+||||++||||++.+++++++.++    |+.|
T Consensus        53 ~p~iam~V~D~~pe~~~~v~~~~~~-~~~---~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~----V~~v  124 (323)
T 4djd_D           53 RPVIGMEVQDIVPDWPDVLKDPFTD-VIN---EPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVAT----VKEV  124 (323)
T ss_dssp             CCEEEEEEESSCCSCCHHHHGGGTT-TTT---CHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHH----HHHH
T ss_pred             CCeEEEEEecCCccchhhHHHHHHH-HHH---hHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHH----HHHH
Confidence            33459999999999      99999 343   4899999999 99999999999999999999999887664    4666


Q ss_pred             HcCCcCCCCeEEEe-----CCCHHHHHHHHHcCCC---EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccc
Q 038230          282 LTMPEMEGKLVSVD-----TFYSKVASEAVGKGAH---IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEEN  353 (480)
Q Consensus       282 ~~~~~~~~~pISID-----T~~~~v~~aaL~~G~~---iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~  353 (480)
                      ++.   .++|||||     |++|+|+++||++|++   +|||+++++ .++|++++++||++||+||..    +      
T Consensus       125 ~~~---~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~~-~~~m~~laa~~g~~vVlmh~~----d------  190 (323)
T 4djd_D          125 LQA---VGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQEN-YKSLTAACMVHKHNIIARSPL----D------  190 (323)
T ss_dssp             HHH---CCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTB-CHHHHHHHHHHTCEEEEECSS----C------
T ss_pred             Hhh---CCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCccc-HHHHHHHHHHhCCeEEEEccc----h------
Confidence            654   48999999     9999999999999854   999999875 589999999999999999952    1      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhcc--------cCCCcEEEeeccccccc
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGLA--------ASHAPILIGPSRKRFLG  424 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l~--------~~g~Pil~G~SrKsfi~  424 (480)
                                .++++++++.|.++||++++||+|||+| |+|+.++|++++++++        .+|+|+|+|+|||||++
T Consensus       191 ----------~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~lg~PvL~GvSrksf~~  260 (323)
T 4djd_D          191 ----------INICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSMPVICTVGYEAWRA  260 (323)
T ss_dssp             ----------HHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHHTCGGGCSCBEEEHHHHHHTS
T ss_pred             ----------HHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHHHhhcccccCCCCEEEecchhhhhh
Confidence                      1567788899999999999999999999 9999999999988873        47999999999999998


Q ss_pred             cccCCCC--------cCccc--HHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHH
Q 038230          425 EICNRPS--------ADERD--PATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSML  473 (480)
Q Consensus       425 ~v~g~~~--------~~~r~--~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~  473 (480)
                      .-...+.        .+.|.  +.+. .++..+.+|++|+-.|+.+..+..-++.+.++
T Consensus       261 ke~~~~~~~~~~~g~~~~~~~~~E~~-~a~~~~~~~~~i~v~~~p~~~~~~~~~~~~l~  318 (323)
T 4djd_D          261 KEASAPVSEYPGWGKETERGILWEAV-TATALLQAGAHILLMRHPEAVARVKENIDQLM  318 (323)
T ss_dssp             HHHHCCTTTCGGGCCHHHHHHHHHHH-HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhHHHHHH-HHHHHHHhcCCEEEEcCHHHHHHHHHHHHHHh
Confidence            7332221        11132  3333 35566779999999999665544444444443

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=99.91  E-value=3.5e-24  Score=223.29  Aligned_cols=176  Identities=17%  Similarity=0.102  Sum_probs=145.9

Q ss_pred             CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCC--ch
Q 038230          247 GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD--PD  324 (480)
Q Consensus       247 GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d--~~  324 (480)
                      |||.|-+=..|+.|           +++.|+|+.+++.   +++||||||++|+++++||+++++..|+|++.+.+  ++
T Consensus       127 ~~D~ial~~~s~dp-----------e~~~~vVk~V~e~---~dvPL~IDS~dpevleaALea~a~~~plI~sat~dn~e~  192 (446)
T 4djd_C          127 TIQAIAIRHDADDP-----------AAFKAAVASVAAA---TQLNLVLMADDPDVLKEALAGVADRKPLLYAATGANYEA  192 (446)
T ss_dssp             CCCEEEEECCSSST-----------HHHHHHHHHHHTT---CCSEEEEECSCHHHHHHHHGGGGGGCCEEEEECTTTHHH
T ss_pred             cCcEEEEEeCCCCH-----------HHHHHHHHHHHHh---CCCCEEEecCCHHHHHHHHHhhcCcCCeeEecchhhHHH
Confidence            88888887776554           6788999999987   59999999999999999999977644444333334  58


Q ss_pred             HHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CCccChhHHHHHH
Q 038230          325 MYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GFSKKAEHNLDIL  403 (480)
Q Consensus       325 m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf~k~~~~~~~~l  403 (480)
                      |++++++|++++|+||.+                     .+.+.+.++.+.++|++  +|++|||+ ||+++.+++.++ 
T Consensus       193 m~~lAa~y~~pVi~~~~d---------------------l~~lkelv~~a~~~GI~--~IvLDPG~~g~~~t~~~~~~i-  248 (446)
T 4djd_C          193 MTALAKENNCPLAVYGNG---------------------LEELAELVDKIVALGHK--QLVLDPGARETSRAIADFTQI-  248 (446)
T ss_dssp             HHHHHHHTTCCEEEECSS---------------------HHHHHHHHHHHHHTTCC--CEEEECCCCSHHHHHHHHHHH-
T ss_pred             HHHHHHHcCCcEEEEecc---------------------HHHHHHHHHHHHHCCCC--cEEECCCchhHHHHHHHHHHH-
Confidence            999999999999999851                     26778999999999996  99999999 999999988877 


Q ss_pred             Hhc------ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHH--HHHHHHHHHHHHh
Q 038230          404 LGL------AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRD--NLDAVKLCDSMLT  474 (480)
Q Consensus       404 r~l------~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e--~~~al~~~~ai~~  474 (480)
                      |++      +.+|+|+++|+||          .  ++|..+|.|  +..+.+|++|+|+||+++  +...+.+.+.||.
T Consensus       249 Rr~AL~~~d~~LgyPvi~~~sr----------~--d~~~E~t~A--~~~i~kga~Iv~vhdv~~~~~~p~~~~r~niyt  313 (446)
T 4djd_C          249 RRLAIKKRFRSFGYPIIALTTA----------A--NPLDEVLQA--VNYVTKYASLVVLRTDAKEHLLPLLSWRQNLYT  313 (446)
T ss_dssp             HHHHHHSCCGGGCSCBEEECCC----------S--SHHHHHHHH--HHHHHTTCSEEEESCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHhhhccCcccCCCEEeccCC----------c--cHHHHHHHH--HHHHHcCCeEEEEcCCcHHHhhhHHHHHhhccC
Confidence            665      4689999999997          1  267766766  788899999999999865  7888888888874

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*

Probab=99.89  E-value=1.8e-22  Score=212.15  Aligned_cols=202  Identities=11%  Similarity=0.079  Sum_probs=160.7

Q ss_pred             CCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHH-----HHHcC----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH
Q 038230          208 SLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRL-----MISEG----ADMIDIGAQSTRPMATKISAEKELERLIPVL  278 (480)
Q Consensus       208 ~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~-----~v~~G----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi  278 (480)
                      ..+|+|..-+.-+          .+.++..++++.     ....|    ||+|++|..++.           .+++.|++
T Consensus        89 ~np~~ia~eI~D~----------~~~~~~~~~~~~~~~~~~~~~g~~~~aD~I~l~~~~~d-----------pe~~~~~V  147 (445)
T 2h9a_A           89 EHPCGLAILVEDT----------LSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSSQD-----------AATFAKAV  147 (445)
T ss_dssp             CSCCEEEEEEETT----------SCHHHHHHHHHHHHTCEEEETTEEEECCEEEEECTTCC-----------HHHHHHHH
T ss_pred             CCCCeEEEEEecC----------CChHhHHHHHHHhhhHHHHhhcccccCcEEEEeCCCCC-----------HHHHHHHH
Confidence            3468888855443          345666667766     55578    999999985433           46788899


Q ss_pred             HHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC---EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230          279 EAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH---IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ  355 (480)
Q Consensus       279 ~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~---iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~  355 (480)
                      +.+++.   +++||||| ++|+++++||++|++   ||||+++++. ++|++++++|++++|+..+     +        
T Consensus       148 k~V~e~---~dvPlsID-~dp~vleaale~~~d~~pLIns~t~en~-~~~~~la~~y~~~vV~~~~-----~--------  209 (445)
T 2h9a_A          148 ATAREV---TDLPFILI-GTPEQLAAALETEGANNPLLYAATADNY-EQMVELAKKYNVPLTVSAK-----G--------  209 (445)
T ss_dssp             HHHHHH---CCSCEEEE-SCHHHHHHHHHHHGGGCCEEEEECTTTH-HHHHHHHHHHTCCEEEECS-----S--------
T ss_pred             HHHHHh---cCCCEEEE-CCHHHHHHHHHhcCCCCCEEEECCHHHH-HHHHHHHHHhCCeEEEEcC-----C--------
Confidence            999986   59999999 999999999999888   9999998864 9999999999999999552     1        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc------ccCCCcEEEeeccccccccccC
Q 038230          356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL------AASHAPILIGPSRKRFLGEICN  428 (480)
Q Consensus       356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l------~~~g~Pil~G~SrKsfi~~v~g  428 (480)
                              .+.+.+++++|.++|++  +||+|||++ |+++.+ +++.+|+.      +.+++|++.++||+        
T Consensus       210 --------l~~l~~lv~~a~~~Gi~--~IiLDP~~~~~~~sl~-~~~~IR~~al~~~d~~lg~P~i~~vs~~--------  270 (445)
T 2h9a_A          210 --------LDALAELVQKITALGYK--NLILDPQPENISEGLF-YQTQIRRLAIKKLFRPFGYPTIAFALDE--------  270 (445)
T ss_dssp             --------HHHHHHHHHHHHHTTCC--CEEEECCCSSHHHHHH-HHHHHHHHHHHSCCGGGCSCBEEECCCS--------
T ss_pred             --------HHHHHHHHHHHHHCCCC--cEEEcCCchhHHHHHH-HHHHHHHhhhcCCCcccCCCeeecCCch--------
Confidence                    24588999999999998  999999986 777666 88888886      25799999999987        


Q ss_pred             CCCcCcccHHHHHHHHHHHHcCCcEEEcCChHH--HHHHHHHHHHHH
Q 038230          429 RPSADERDPATIASITAGVLGGANIVRVHNIRD--NLDAVKLCDSML  473 (480)
Q Consensus       429 ~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e--~~~al~~~~ai~  473 (480)
                          +.|..+++  ++.++++||+|+|+||+++  ....+.+...||
T Consensus       271 ----d~~~ea~l--A~~~~~~GasIl~~~~~~~~~rlp~~~lR~~i~  311 (445)
T 2h9a_A          271 ----NPYQAVME--ASVYIAKYAGIIVLNTVEPADILPLITLRLNIY  311 (445)
T ss_dssp             ----SHHHHHHH--HHHHHHTTCSEEEECCCCHHHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHH--HHHHHHcCCeEEEecCccHHHhccHHHHhcccC
Confidence                23533344  4566999999999999765  455677777776

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=99.17  E-value=1.7e-09  Score=109.52  Aligned_cols=233  Identities=16%  Similarity=0.203  Sum_probs=161.0

Q ss_pred             cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230          195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL  274 (480)
Q Consensus       195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl  274 (480)
                      .+-..+|+..++.+.+..|..-.|...         .|.++.+++++++.++|||+++++..+          +++ .  
T Consensus        16 tr~v~VG~v~IGG~~Pi~VQSMtnt~T---------~D~~atv~Qi~~l~~aG~diVRvavp~----------~~~-a--   73 (366)
T 3noy_A           16 TRQIRVGNVKIGGDAPIVVQSMTSTKT---------HDVEATLNQIKRLYEAGCEIVRVAVPH----------KED-V--   73 (366)
T ss_dssp             CCCEEETTEEESTTSCCEEEEECCSCT---------TCHHHHHHHHHHHHHTTCCEEEEECCS----------HHH-H--
T ss_pred             ceEEEECCEEEcCCCcEEEEEecCCCC---------cCHHHHHHHHHHHHHcCCCEEEeCCCC----------hHH-H--
Confidence            455778999999988999999887665         799999999999999999999998632          233 2  


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCC-----chHHHHHHhcCCCEEEEcCCC-CCCc
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLD-----PDMYKVVAGLKVPYVAMHMRG-DPST  347 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d-----~~m~~l~~~~~~~vVlmh~~g-~p~~  347 (480)
                       ..++.|++.   .++||+.|. |++..+.+|+++|++.+ .|+.++.-     +++++.|+++++|+.+--+.| .++.
T Consensus        74 -~al~~I~~~---~~vPlvaDiHf~~~lal~a~e~G~dkl-RINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~  148 (366)
T 3noy_A           74 -EALEEIVKK---SPMPVIADIHFAPSYAFLSMEKGVHGI-RINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKD  148 (366)
T ss_dssp             -HHHHHHHHH---CSSCEEEECCSCHHHHHHHHHTTCSEE-EECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHH
T ss_pred             -HHHHHHHhc---CCCCEEEeCCCCHHHHHHHHHhCCCeE-EECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHH
Confidence             345666665   489999995 99999999999999985 47765531     479999999999999855444 3433


Q ss_pred             cccccccchh-hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeecccccccc
Q 038230          348 MQNEENLQYD-DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGE  425 (480)
Q Consensus       348 ~~~~~~~~~~-~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~  425 (480)
                      ..++    |. +..+.+.+.+.+.++.+++.|+.  +|++..=   +.+....++..|.+ +..+||+-+|+..      
T Consensus       149 ll~~----yg~~~~eamVeSAl~~~~~~e~~gf~--~iviS~K---~S~v~~~i~ayr~la~~~dyPLHlGvTE------  213 (366)
T 3noy_A          149 LLEK----YGYPSAEALAESALRWSEKFEKWGFT--NYKVSIK---GSDVLQNVRANLIFAERTDVPLHIGITE------  213 (366)
T ss_dssp             HHHH----HSSCCHHHHHHHHHHHHHHHHHTTCC--CEEEEEE---CSSHHHHHHHHHHHHHHCCCCEEECCSS------
T ss_pred             HHHh----cCCCCHHHHHHHHHHHHHHHHhCCCC--eEEEeee---cCChHHHHHHHHHHHhccCCCEEEccCC------
Confidence            2221    21 23455678888999999999995  9998761   22334445555555 3479999999752      


Q ss_pred             ccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCC----hHHHHHHHHHHHHH
Q 038230          426 ICNRPSADERDPATIASITAGVLGG-ANIVRVHN----IRDNLDAVKLCDSM  472 (480)
Q Consensus       426 v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHd----V~e~~~al~~~~ai  472 (480)
                      . |.  ..+-...+.+....++..| .|-+|+-=    ++|.+-|..+.+++
T Consensus       214 A-G~--~~~G~ikSsigiG~LL~dGIGDTIRVSLt~~p~~Ev~va~~ILqsl  262 (366)
T 3noy_A          214 A-GM--GTKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSL  262 (366)
T ss_dssp             C-CS--HHHHHHHHHHHHHHHHHTTCCSEECCCCSSCHHHHHHHHHHHHHHT
T ss_pred             C-CC--CcceeeehHHHHHHHHHhcccceEEEeCCCCcHHHHHHHHHHHHhc
Confidence            1 11  1111222333334444456 68888754    55565555555554

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=97.89  E-value=0.0011  Score=68.40  Aligned_cols=210  Identities=16%  Similarity=0.201  Sum_probs=136.8

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCC--CCC-CCCCCHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQST--RPM-ATKISAEKELER  273 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eSt--rP~-a~~v~~~eE~~r  273 (480)
                      .+.+++..++.+..+.|.|..-+.           |.+.|++.|+.+.++||++|-.+.-..  .|+ ....+ .+.++.
T Consensus       130 ~i~i~~~~iG~~~~~~Iigpcsve-----------s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~-~egl~~  197 (385)
T 3nvt_A          130 IVTVKGLPIGNGEPVFVFGPCSVE-----------SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLG-LEGLKI  197 (385)
T ss_dssp             CEEETTEEETSSSCEEEEECSBCC-----------CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT-HHHHHH
T ss_pred             EEEECCEEECCCCeEEEEEeCCcC-----------CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCC-HHHHHH
Confidence            456777777766668888854332           789999999999999999999997442  233 22233 244433


Q ss_pred             HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccc
Q 038230          274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEEN  353 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~  353 (480)
                      +    ..+.+.   .++|+.-|-++++.++.+.+. ++++-=-++....-.++..++++|.||++-.  |.-.|+     
T Consensus       198 L----~~~~~~---~Gl~~~te~~d~~~~~~l~~~-vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~--G~~~t~-----  262 (385)
T 3nvt_A          198 L----KRVSDE---YGLGVISEIVTPADIEVALDY-VDVIQIGARNMQNFELLKAAGRVDKPILLKR--GLSATI-----  262 (385)
T ss_dssp             H----HHHHHH---HTCEEEEECCSGGGHHHHTTT-CSEEEECGGGTTCHHHHHHHHTSSSCEEEEC--CTTCCH-----
T ss_pred             H----HHHHHH---cCCEEEEecCCHHHHHHHHhh-CCEEEECcccccCHHHHHHHHccCCcEEEec--CCCCCH-----
Confidence            3    333333   389999999999999999988 9998844443334688999999999999854  332221     


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCC-Ccc-C-hhHHHHHHHhcc-cCCCcEEEeeccccccccccC
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLG-FSK-K-AEHNLDILLGLA-ASHAPILIGPSRKRFLGEICN  428 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiG-f~k-~-~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g  428 (480)
                                 +.....++.+.+.|.+  +|+| .=|+- |.. . ..-|+..+..++ .+++|+++.+|.      -.|
T Consensus       263 -----------~e~~~Ave~i~~~Gn~--~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th------~~G  323 (385)
T 3nvt_A          263 -----------EEFIGAAEYIMSQGNG--KIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTH------STG  323 (385)
T ss_dssp             -----------HHHHHHHHHHHTTTCC--CEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHH------HHC
T ss_pred             -----------HHHHHHHHHHHHcCCC--eEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCC------CCC
Confidence                       3345677778888975  5554 54653 322 1 112343343332 369999877652      112


Q ss_pred             CCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          429 RPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       429 ~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                           +|..... ++..|+..||+  +|-+|-
T Consensus       324 -----~r~~v~~-~a~AAvA~GA~gl~iE~H~  349 (385)
T 3nvt_A          324 -----RKDLLLP-CAKAALAIEADGVMAEVHP  349 (385)
T ss_dssp             -----CGGGHHH-HHHHHHHTTCSEEEEEBCS
T ss_pred             -----ccchHHH-HHHHHHHhCCCEEEEEecC
Confidence                 3444322 23457789999  999994

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=97.83  E-value=0.0004  Score=68.34  Aligned_cols=182  Identities=16%  Similarity=0.217  Sum_probs=111.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCC-C
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTF-Y  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~-~  298 (480)
                      +.+.+..++.++.+.+.|||+|.+|...+-|-++....+.-          ++.+..+++.+++..  .++|+-+=|| |
T Consensus        28 dP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~--~~~Pivlm~Y~n  105 (267)
T 3vnd_A           28 DPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH--PDMPIGLLLYAN  105 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCCEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEecCc
Confidence            35789999999999999999999999777776553222221          125567788887641  3789988888 5


Q ss_pred             H-------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          299 S-------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       299 ~-------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      |       +-++++.++|++  +|.|..-++ ..++.+.++++|...|.+-.   |.|..                   +
T Consensus       106 pv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee-~~~~~~~~~~~gl~~i~lia---P~t~~-------------------e  162 (267)
T 3vnd_A          106 LVFANGIDEFYTKAQAAGVDSVLIADVPVEE-SAPFSKAAKAHGIAPIFIAP---PNADA-------------------D  162 (267)
T ss_dssp             HHHHHCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEECEEC---TTCCH-------------------H
T ss_pred             HHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh-HHHHHHHHHHcCCeEEEEEC---CCCCH-------------------H
Confidence            4       346777888998  577776433 47899999999998874442   32211                   2


Q ss_pred             HHHHHH--HCCCCCCCEEE---ecCCCCccC-hhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHH
Q 038230          370 KVRDAE--LSGIPAWRIII---DPGLGFSKK-AEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIAS  442 (480)
Q Consensus       370 ~i~~a~--~~Gi~~~~Iil---DPgiGf~k~-~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~  442 (480)
                      ++....  ..|+    |+.   -+..|-.+. .....+++++++ ..+.|+++|.          |-.+     ..++  
T Consensus       163 ri~~i~~~~~gf----vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGf----------GI~~-----~e~~--  221 (267)
T 3vnd_A          163 TLKMVSEQGEGY----TYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGF----------GIAE-----PEQV--  221 (267)
T ss_dssp             HHHHHHHHCCSC----EEESCCCCCC--------CHHHHHHHHHTTTCCCEEECS----------SCCS-----HHHH--
T ss_pred             HHHHHHHhCCCc----EEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEEC----------CcCC-----HHHH--
Confidence            222222  2234    555   333443221 222345666663 4689999984          3321     1222  


Q ss_pred             HHHHHHcCCcEEEcCC
Q 038230          443 ITAGVLGGANIVRVHN  458 (480)
Q Consensus       443 ~~~a~~~Ga~IlRvHd  458 (480)
                       ..++..|||.+-|=.
T Consensus       222 -~~~~~~gADgvVVGS  236 (267)
T 3vnd_A          222 -RAAIKAGAAGAISGS  236 (267)
T ss_dssp             -HHHHHTTCSEEEECH
T ss_pred             -HHHHHcCCCEEEECH
Confidence             236678888887754

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=97.79  E-value=0.0014  Score=64.14  Aligned_cols=180  Identities=16%  Similarity=0.183  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH------------HHHHHHHHHHHHcCCcCCCCeEEEeC-CC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE------------LERLIPVLEAVLTMPEMEGKLVSVDT-FY  298 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE------------~~rl~~vi~~l~~~~~~~~~pISIDT-~~  298 (480)
                      +.+..++.++.+.+.|||+|.+|..-+.|-++.  +..+            +.....+++.+++..  .++|+-+=+ ++
T Consensus        29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG--~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm~y~n  104 (268)
T 1qop_A           29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADG--PTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYAN  104 (268)
T ss_dssp             CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEccc
Confidence            668889999999999999999998665554332  2222            345567788888651  267876644 34


Q ss_pred             H-------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          299 S-------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       299 ~-------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      |       +-++++.++|++  ++.|....+ ..+..+.++++|..++.+-.   |.+..               +.+++
T Consensus       105 ~v~~~g~~~~~~~~~~aGadgii~~d~~~e~-~~~~~~~~~~~g~~~i~l~~---p~t~~---------------~~i~~  165 (268)
T 1qop_A          105 LVFNNGIDAFYARCEQVGVDSVLVADVPVEE-SAPFRQAALRHNIAPIFICP---PNADD---------------DLLRQ  165 (268)
T ss_dssp             HHHTTCHHHHHHHHHHHTCCEEEETTCCGGG-CHHHHHHHHHTTCEEECEEC---TTCCH---------------HHHHH
T ss_pred             HHHHhhHHHHHHHHHHcCCCEEEEcCCCHHH-HHHHHHHHHHcCCcEEEEEC---CCCCH---------------HHHHH
Confidence            3       677888889999  344444322 36789999999988665432   22211               11112


Q ss_pred             HHHHHHHCCCCCCCEEEecCCCCc-c--C-hhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230          370 KVRDAELSGIPAWRIIIDPGLGFS-K--K-AEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASIT  444 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDPgiGf~-k--~-~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~  444 (480)
                      ..+.  ..|+    +++.-..|++ .  . .....+.++++ +..++|+.+|.          |-.+     ..++   .
T Consensus       166 i~~~--~~g~----v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vgg----------GI~t-----~e~~---~  221 (268)
T 1qop_A          166 VASY--GRGY----TYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGF----------GISS-----PEQV---S  221 (268)
T ss_dssp             HHHH--CCSC----EEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEES----------SCCS-----HHHH---H
T ss_pred             HHhh--CCCc----EEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEEC----------CCCC-----HHHH---H
Confidence            2211  2233    6776655552 1  1 11224555555 24589999874          3321     1222   3


Q ss_pred             HHHHcCCcEEEcCC
Q 038230          445 AGVLGGANIVRVHN  458 (480)
Q Consensus       445 ~a~~~Ga~IlRvHd  458 (480)
                      .++..|||.+-|=.
T Consensus       222 ~~~~agAD~vVVGS  235 (268)
T 1qop_A          222 AAVRAGAAGAISGS  235 (268)
T ss_dssp             HHHHTTCSEEEECH
T ss_pred             HHHHcCCCEEEECh
Confidence            45778898887755

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=97.79  E-value=0.00068  Score=66.83  Aligned_cols=184  Identities=13%  Similarity=0.187  Sum_probs=112.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+.+..++.++.+.+.|||+|.+|...+-|-++...-+.-          ++.+...++.+++..  .++|+.+=||.-
T Consensus        30 dP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~--~~~Pivlm~Y~n  107 (271)
T 3nav_A           30 DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARN--PETPIGLLMYAN  107 (271)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTSCEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEecCc
Confidence            45889999999999999999999999877776654333321          125566777777531  378988877643


Q ss_pred             --------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          300 --------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       300 --------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                              +-+++|.++|++  ++.|..-++ ..++.+.+++||..+|.+-.   |.+..                   +
T Consensus       108 ~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee-~~~~~~~~~~~gl~~I~lva---p~t~~-------------------e  164 (271)
T 3nav_A          108 LVYARGIDDFYQRCQKAGVDSVLIADVPTNE-SQPFVAAAEKFGIQPIFIAP---PTASD-------------------E  164 (271)
T ss_dssp             HHHHTCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEEEEEC---TTCCH-------------------H
T ss_pred             HHHHHhHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHcCCeEEEEEC---CCCCH-------------------H
Confidence                    246777778988  577776543 47799999999999885543   32211                   2


Q ss_pred             HHHHHHHCCCCCCCEEEecCCCC-ccC---hhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230          370 KVRDAELSGIPAWRIIIDPGLGF-SKK---AEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASIT  444 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDPgiGf-~k~---~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~  444 (480)
                      ++....+.+-.  =|+.=...|. |..   ...-.+++++++ ..+.|+++|.          |-.++     .++   .
T Consensus       165 ri~~i~~~~~g--fiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGf----------GIst~-----e~~---~  224 (271)
T 3nav_A          165 TLRAVAQLGKG--YTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGF----------GISEP-----AQV---K  224 (271)
T ss_dssp             HHHHHHHHCCS--CEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECS----------SCCSH-----HHH---H
T ss_pred             HHHHHHHHCCC--eEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEEC----------CCCCH-----HHH---H
Confidence            22222222222  1565444443 211   122345666663 4589999974          33221     122   2


Q ss_pred             HHHHcCCcEEEcCC
Q 038230          445 AGVLGGANIVRVHN  458 (480)
Q Consensus       445 ~a~~~Ga~IlRvHd  458 (480)
                      .++..|||.+-|=.
T Consensus       225 ~~~~~gADgvIVGS  238 (271)
T 3nav_A          225 QAIEAGAAGAISGS  238 (271)
T ss_dssp             HHHHTTCSEEEESH
T ss_pred             HHHHcCCCEEEECH
Confidence            36677888777644

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=97.72  E-value=0.00078  Score=65.84  Aligned_cols=104  Identities=17%  Similarity=0.310  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH------------HHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE------------LERLIPVLEAVLTMPEMEGKLVSVDTFY  298 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE------------~~rl~~vi~~l~~~~~~~~~pISIDT~~  298 (480)
                      .+.+..++.++.+.+.|||+|.||..-+.|-++.  +..+            ++++..+++.+++..  .++|+.+=+|.
T Consensus        28 p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adg--p~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pi~~m~y~  103 (262)
T 2ekc_A           28 PDYETSLKAFKEVLKNGTDILEIGFPFSDPVADG--PTIQVAHEVALKNGIRFEDVLELSETLRKEF--PDIPFLLMTYY  103 (262)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTSCEEEECCH
T ss_pred             CChHHHHHHHHHHHHcCCCEEEECCCCCCccccc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--CCCCEEEEecC
Confidence            4778899999999999999999998665554432  1111            134566788888651  16888886554


Q ss_pred             H--------HHHHHHHHcCCCE--EecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          299 S--------KVASEAVGKGAHI--VNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       299 ~--------~v~~aaL~~G~~i--INdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                      .        +-++.|.++|++-  +.|+..++ ..+..+.++++|..+|.+
T Consensus       104 n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee-~~~~~~~~~~~gl~~i~l  153 (262)
T 2ekc_A          104 NPIFRIGLEKFCRLSREKGIDGFIVPDLPPEE-AEELKAVMKKYVLSFVPL  153 (262)
T ss_dssp             HHHHHHCHHHHHHHHHHTTCCEEECTTCCHHH-HHHHHHHHHHTTCEECCE
T ss_pred             cHHHHhhHHHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHHHcCCcEEEE
Confidence            3        5567788889983  33433211 256788889999886643

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=97.54  E-value=0.0026  Score=65.53  Aligned_cols=207  Identities=16%  Similarity=0.133  Sum_probs=137.2

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCC---C-------
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTR----PMA---T-------  263 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr----P~a---~-------  263 (480)
                      ++++++.++.+.++.|++-+-..-        ..|.+.|.+.++...++|||.+=.+.--.+    |.+   .       
T Consensus        16 ~~~~~~~ig~~~~~~IIAEiG~NH--------~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~   87 (385)
T 1vli_A           16 FQIANKTVGKDAPVFIIAEAGINH--------DGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDV   87 (385)
T ss_dssp             EEETTEEEETTSCCEEEEEEETTT--------TTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CC
T ss_pred             eeECCEEeCCCCCcEEEEeecCcc--------cccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCc
Confidence            567777777777899999773332        248899999999999999999999853221    221   0       


Q ss_pred             ---------CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCC
Q 038230          264 ---------KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKV  334 (480)
Q Consensus       264 ---------~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~  334 (480)
                               ..+ +|   .+..+.+.-++.    ++++.-.-++++.++...+.|++++-=-|+.-.+-.+++.+++.|-
T Consensus        88 ~~ye~~~~~~l~-~e---~~~~L~~~~~~~----Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gK  159 (385)
T 1vli_A           88 SIFSLVQSMEMP-AE---WILPLLDYCREK----QVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNR  159 (385)
T ss_dssp             CHHHHGGGBSSC-GG---GHHHHHHHHHHT----TCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCS
T ss_pred             cHHHHHHhcCCC-HH---HHHHHHHHHHHc----CCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCC
Confidence                     011 22   333333444443    8999999999999999888899988744443335678999999999


Q ss_pred             CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CCccCh-hHHHHHHHhc-ccC-C
Q 038230          335 PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GFSKKA-EHNLDILLGL-AAS-H  410 (480)
Q Consensus       335 ~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf~k~~-~~~~~~lr~l-~~~-g  410 (480)
                      ||++..  |.. |+                +++...++.+.+.|.+  +|+|==++ +|.... .-|+..+..+ +.+ +
T Consensus       160 PViLSt--Gma-Tl----------------~Ei~~Ave~i~~~Gn~--~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~  218 (385)
T 1vli_A          160 PMIFST--AGA-EI----------------SDVHEAWRTIRAEGNN--QIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPE  218 (385)
T ss_dssp             CEEEEC--TTC-CH----------------HHHHHHHHHHHTTTCC--CEEEEEECSSSSCCGGGCCTTHHHHHHHHSTT
T ss_pred             eEEEEC--CCC-CH----------------HHHHHHHHHHHHCCCC--cEEEEeccCCCCCChhhcCHHHHHHHHHHcCC
Confidence            999843  443 33                3345777788888885  67663333 343322 3345555555 345 8


Q ss_pred             CcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          411 APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       411 ~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      +|+  |.|     .+-+|      +    ..++..|+..||+||-+|-
T Consensus       219 lpV--G~S-----dHt~G------~----~~~~~AAvAlGA~iIEkHf  249 (385)
T 1vli_A          219 AVI--GFS-----DHSEH------P----TEAPCAAVRLGAKLIEKHF  249 (385)
T ss_dssp             SEE--EEE-----ECCSS------S----SHHHHHHHHTTCSEEEEEB
T ss_pred             CCE--EeC-----CCCCC------c----hHHHHHHHHcCCCEEEeCC
Confidence            887  776     22222      1    2334567789999999994

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=97.54  E-value=0.0052  Score=61.15  Aligned_cols=173  Identities=14%  Similarity=0.189  Sum_probs=112.1

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |+..|+ |-+.-.+..++.++.++.++.+.+.|.++|.+|.-++ |. .......+      .+++.+.+.   .+++++
T Consensus        11 i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~~~~~d~~------~~~~~~~~~---~~~~~~   80 (302)
T 2ftp_A           11 LVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVS-PKWVPQMAGSA------EVFAGIRQR---PGVTYA   80 (302)
T ss_dssp             EEECTTTHHHHTSSSCCCHHHHHHHHHHHHHTTCSEEEEEECSC-TTTCGGGTTHH------HHHHHSCCC---TTSEEE
T ss_pred             EEeCCCCCCccCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcC-ccccccccCHH------HHHHHhhhc---CCCEEE
Confidence            666675 5544446678999999999999999999999996322 22 11111111      234555544   478888


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEE--EEcCCCCCCccccccc
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEEN  353 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~  353 (480)
                      +=..+.+-++.|+++|++.|.=..+.. +                  .++++.++++|..|-  +++.-|.|..  .+.+
T Consensus        81 ~l~~~~~~i~~a~~aG~~~v~i~~~~s-~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~--~~~~  157 (302)
T 2ftp_A           81 ALAPNLKGFEAALESGVKEVAVFAAAS-EAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD--GDVD  157 (302)
T ss_dssp             EECCSHHHHHHHHHTTCCEEEEEEESC-HHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT--BCCC
T ss_pred             EEeCCHHHHHHHHhCCcCEEEEEEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC--CCCC
Confidence            777899999999999999887322221 1                  356888889998775  4555443421  1111


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCE-EEecCCCCccChhHHHHHHHhcc-cC-CCcEEE
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRI-IIDPGLGFSKKAEHNLDILLGLA-AS-HAPILI  415 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I-ilDPgiGf~k~~~~~~~~lr~l~-~~-g~Pil~  415 (480)
                                .+++.+.++.+.+.|++  .| +-|- .|. .++.+..++++.++ .. +.|+-+
T Consensus       158 ----------~~~~~~~~~~~~~~G~d--~i~l~DT-~G~-~~P~~~~~lv~~l~~~~~~~~l~~  208 (302)
T 2ftp_A          158 ----------PRQVAWVARELQQMGCY--EVSLGDT-IGV-GTAGATRRLIEAVASEVPRERLAG  208 (302)
T ss_dssp             ----------HHHHHHHHHHHHHTTCS--EEEEEES-SSC-CCHHHHHHHHHHHTTTSCGGGEEE
T ss_pred             ----------HHHHHHHHHHHHHcCCC--EEEEeCC-CCC-cCHHHHHHHHHHHHHhCCCCeEEE
Confidence                      15667778888899997  44 3354 444 35667788888873 33 566643

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=97.37  E-value=0.0032  Score=62.51  Aligned_cols=172  Identities=17%  Similarity=0.186  Sum_probs=106.8

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      |+..|+ |-..--+..++.++.++.++++.+.|.++|++|.-++ |...+.-.+.  +   .+++.+++.   .+++++.
T Consensus         8 i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~~~d~--~---~~~~~~~~~---~~~~~~~   78 (298)
T 2cw6_A            8 IVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVS-PKWVPQMGDH--T---EVLKGIQKF---PGINYPV   78 (298)
T ss_dssp             EEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEECCEECCC-TTTCGGGTTH--H---HHHHHSCCC---TTCBCCE
T ss_pred             EEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcC-cccccccCCH--H---HHHHHHhhC---CCCEEEE
Confidence            555665 4333335568899999999999999999999996322 3211110111  1   234455543   3677888


Q ss_pred             eCCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          295 DTFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       295 DT~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      ...+.+-++.|+++|++.|.=..+.. +                  .++++.++++|..+.  ++..-|-|...  +.+ 
T Consensus        79 l~~~~~~i~~a~~ag~~~v~i~~~~s-d~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~--~~~-  154 (298)
T 2cw6_A           79 LTPNLKGFEAAVAAGAKEVVIFGAAS-ELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEG--KIS-  154 (298)
T ss_dssp             ECCSHHHHHHHHHTTCSEEEEEEESC-HHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTB--SCC-
T ss_pred             EcCCHHhHHHHHHCCCCEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCC--CCC-
Confidence            88999999999999999876332221 1                  235788888998775  34333434211  111 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCE-EEecCCCCccChhHHHHHHHhcc--cCCCcE
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRI-IIDPGLGFSKKAEHNLDILLGLA--ASHAPI  413 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I-ilDPgiGf~k~~~~~~~~lr~l~--~~g~Pi  413 (480)
                               .+++.+.++.+.+.|..  .| +-|- +|.. ++.+..++++.++  .++.|+
T Consensus       155 ---------~~~~~~~~~~~~~~Ga~--~i~l~DT-~G~~-~P~~~~~lv~~l~~~~~~~~i  203 (298)
T 2cw6_A          155 ---------PAKVAEVTKKFYSMGCY--EISLGDT-IGVG-TPGIMKDMLSAVMQEVPLAAL  203 (298)
T ss_dssp             ---------HHHHHHHHHHHHHTTCS--EEEEEET-TSCC-CHHHHHHHHHHHHHHSCGGGE
T ss_pred             ---------HHHHHHHHHHHHHcCCC--EEEecCC-CCCc-CHHHHHHHHHHHHHhCCCCeE
Confidence                     15677888889999986  44 5565 4443 3555566676662  234554

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=97.37  E-value=0.011  Score=60.14  Aligned_cols=205  Identities=17%  Similarity=0.130  Sum_probs=133.4

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCC----CCCC---C-------
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQST----RPMA---T-------  263 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eSt----rP~a---~-------  263 (480)
                      +.++++.++.+.++.|++-+-..-        ..|.|.|.+.++...++|||.+=.+.-..    .|.+   .       
T Consensus         7 i~i~~~~iG~~~~~~iIAe~g~NH--------~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~   78 (349)
T 2wqp_A            7 FKIGNRSVGYNHEPLIICEIGINH--------EGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVS   78 (349)
T ss_dssp             EEETTEEEETTSCCEEEEEEETTT--------TTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSC
T ss_pred             EEECCEEECCCCceEEEEecCCcc--------cCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCcc
Confidence            556777777766789998553322        24889999999999999999999983211    1111   0       


Q ss_pred             --------CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCC
Q 038230          264 --------KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVP  335 (480)
Q Consensus       264 --------~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~  335 (480)
                              ..+ +|+++   .+.+.-++.    ++++.-.-++++.++...+.|++++-=-|+.-.+-.+++-+++.|-|
T Consensus        79 ~y~~~~~~~l~-~e~~~---~L~~~~~~~----Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkP  150 (349)
T 2wqp_A           79 IYEIMERCALN-EEDEI---KLKEYVESK----GMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKP  150 (349)
T ss_dssp             HHHHHHHHCCC-HHHHH---HHHHHHHHT----TCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSC
T ss_pred             HHHHHHHhCCC-HHHHH---HHHHHHHHh----CCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCe
Confidence                    122 23333   333444443    99999999999999999889999887444433356789999999999


Q ss_pred             EEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CCccCh-hHHHHHHHhc-ccC-CC
Q 038230          336 YVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GFSKKA-EHNLDILLGL-AAS-HA  411 (480)
Q Consensus       336 vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf~k~~-~~~~~~lr~l-~~~-g~  411 (480)
                      |++  ++|.. |+                +++...++.+.+.|-   +|+|==++ +|.... .-|+..+..+ +.+ ++
T Consensus       151 viL--stGma-t~----------------~Ei~~Ave~i~~~G~---~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~l  208 (349)
T 2wqp_A          151 IIL--STGMN-SI----------------ESIKKSVEIIREAGV---PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDA  208 (349)
T ss_dssp             EEE--ECTTC-CH----------------HHHHHHHHHHHHHTC---CEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTS
T ss_pred             EEE--ECCCC-CH----------------HHHHHHHHHHHHcCC---CEEEEeccCCCCCChhhcCHHHHHHHHHHCCCC
Confidence            998  34553 43                334566777777887   56553343 343332 3355556655 345 88


Q ss_pred             cEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          412 PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       412 Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      |+  |.|     ++-+|           ..++..|+..||+||-+|-
T Consensus       209 pV--g~s-----dHt~G-----------~~~~~AAvAlGA~iIEkH~  237 (349)
T 2wqp_A          209 II--GLS-----DHTLD-----------NYACLGAVALGGSILERHF  237 (349)
T ss_dssp             EE--EEE-----CCSSS-----------SHHHHHHHHHTCCEEEEEB
T ss_pred             CE--EeC-----CCCCc-----------HHHHHHHHHhCCCEEEeCC
Confidence            87  666     11112           2334567788999999993

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=97.35  E-value=0.063  Score=54.64  Aligned_cols=289  Identities=18%  Similarity=0.175  Sum_probs=161.7

Q ss_pred             ceeeeeeeccCCCHHHHHHHHHHHHHHcCCCC-CCCCCCCccchhhcccCCeee-eCCCc-cccccccccchhhhhhhhh
Q 038230           95 FLNSAVRGVTKLGPHELLGVLKKIEKDMGRTN-GIRHGPRPIDLDILFYGRFSI-HSDTL-TVPHERIWERPFVVAPLLD  171 (480)
Q Consensus        95 F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~r-~~~~~~r~iDiDIl~~~~~~~-~~~~l-~iPHp~~~~R~fVl~pl~e  171 (480)
                      -....+..+..-+.+++-+.+..||. .|-.- ..+-..|++   |=..|++.. +...+ .+  |...+--.|..|+.-
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~---ig~~g~~~~~~~~~~~~~--~~v~~~~~i~~~~k~   83 (350)
T 1vr6_A           10 HHHMIVVLKPGSTEEDIRKVVKLAES-YNLKCHISKGQERTV---IGIIGDDRYVVADKFESL--DCVESVVRVLKPYKL   83 (350)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHH-TTEEEEEEECSSCEE---EEEEEEESSCCHHHHHTS--TTEEEEEECSCSCCT
T ss_pred             cceEEEEECCCCCHHHHHHHHHHHHh-CCCeEEEEecCceEE---EEEECCcCcCCHHHhhCC--ccceeeccCCCChhh
Confidence            34567788888899999999999987 44322 223334555   444454331 00000 00  111111122222221


Q ss_pred             hhCCCccccccccCCccccccCccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEE
Q 038230          172 LLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI  251 (480)
Q Consensus       172 l~~~~~~p~~~~~~~~~~q~~~i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiI  251 (480)
                      ...++ ||              -...+.+++..++.+ ++.|++-.-+          .-|.+.+++.|++..+.||+++
T Consensus        84 ~sr~~-~~--------------~~~~i~i~~~~iG~~-~~~vIAgpcs----------~es~e~a~~~a~~~k~aGa~~v  137 (350)
T 1vr6_A           84 VSREF-HP--------------EDTVIDLGDVKIGNG-YFTIIAGPCS----------VEGREMLMETAHFLSELGVKVL  137 (350)
T ss_dssp             TBTTT-CC--------------SCCCEECSSCEESTT-EEEEEEECSB----------CCCHHHHHHHHHHHHHTTCCEE
T ss_pred             hhhhc-CC--------------cCCEEEECCEEECCC-CeEEEEeCCC----------cCCHHHHHHHHHHHHHcCCCee
Confidence            11111 21              122345566666554 5666553321          4588999999999999999999


Q ss_pred             EeCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHH
Q 038230          252 DIGAQSTRP---MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYK  327 (480)
Q Consensus       252 DIG~eStrP---~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~  327 (480)
                      =.+....|.   +..... ++.++.+..   ..++    .++|+.-+-++++.++...+. ++++- |.+.+ ....++.
T Consensus       138 r~q~fKprTs~~~f~glg-~egl~~l~~---~~~e----~Gl~~~te~~d~~~~~~l~~~-vd~lk-IgAr~~~n~~LL~  207 (350)
T 1vr6_A          138 RGGAYKPRTSPYSFQGLG-EKGLEYLRE---AADK----YGMYVVTEALGEDDLPKVAEY-ADIIQ-IGARNAQNFRLLS  207 (350)
T ss_dssp             ECBSCCCCCSTTSCCCCT-HHHHHHHHH---HHHH----HTCEEEEECSSGGGHHHHHHH-CSEEE-ECGGGTTCHHHHH
T ss_pred             eeeEEeCCCChHhhcCCC-HHHHHHHHH---HHHH----cCCcEEEEeCCHHHHHHHHHh-CCEEE-ECcccccCHHHHH
Confidence            888765443   112222 444544433   2333    389999999999999999888 88886 44433 2356888


Q ss_pred             HHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-cCC-CC-cc-ChhHHHHHH
Q 038230          328 VVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-PGL-GF-SK-KAEHNLDIL  403 (480)
Q Consensus       328 l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-Pgi-Gf-~k-~~~~~~~~l  403 (480)
                      -+++.+.||++--  |.-.|+                +.+...++.+.+.|-+  +++|= =|+ .| .. ...-|+..+
T Consensus       208 ~va~~~kPVilk~--G~~~tl----------------~ei~~Ave~i~~~GN~--~viLceRG~~typ~~~~~~vdl~ai  267 (350)
T 1vr6_A          208 KAGSYNKPVLLKR--GFMNTI----------------EEFLLSAEYIANSGNT--KIILCERGIRTFEKATRNTLDISAV  267 (350)
T ss_dssp             HHHTTCSCEEEEC--CTTCCH----------------HHHHHHHHHHHHTTCC--CEEEEECCBCCSCCSSSSBCCTTHH
T ss_pred             HHHccCCcEEEcC--CCCCCH----------------HHHHHHHHHHHHCCCC--eEEEEeCCCCCCCCcChhhhhHHHH
Confidence            8889999999843  332221                3345667777888986  78881 233 34 22 112233333


Q ss_pred             Hhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230          404 LGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVH  457 (480)
Q Consensus       404 r~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH  457 (480)
                      ..+ +.+++|+++ -|-     +-.|     .|.....+ +..|+..||+  ++-+|
T Consensus       268 ~~lk~~~~lpVi~-dss-----Hs~G-----~~~~v~~~-a~AAvA~GA~Gl~IE~H  312 (350)
T 1vr6_A          268 PIIRKESHLPILV-DPS-----HSGG-----RRDLVIPL-SRAAIAVGAHGIIVEVH  312 (350)
T ss_dssp             HHHHHHBSSCEEE-CHH-----HHHC-----SGGGHHHH-HHHHHHHTCSEEEEEBC
T ss_pred             HHHHHhhCCCEEE-eCC-----CCCc-----ccchHHHH-HHHHHHhCCCEEEEEec
Confidence            333 235899653 221     1112     22222221 2234557999  99999

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=97.32  E-value=0.0021  Score=65.15  Aligned_cols=202  Identities=16%  Similarity=0.116  Sum_probs=121.0

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHH-HHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVR-LMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~-~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |+-.|| |-..--+..++.++.++.++ .+.+.|.+.|++|...+.|        ++|+++..+.+.........+..++
T Consensus        22 I~DtTlRDG~Q~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~i~   93 (337)
T 3ble_A           22 ILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSK--------GELETVQKIMEWAATEQLTERIEIL   93 (337)
T ss_dssp             EEECHHHHHTTSTTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCT--------THHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             EEECCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCCh--------hHHHHHHHHHhhhhhhccCCCCeEE
Confidence            566665 55544455689999999999 9999999999999754433        4566665444421110001356788


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecCCCCCC-----------------CchHHHHHHhcCCCEEEEcCCCCCCccccccccch
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDVSAGQL-----------------DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY  356 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdVsg~~~-----------------d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~  356 (480)
                      ..+...+-++.|+++|++.|.=......                 -.++++.++++|..+.+..+. -|..  .+     
T Consensus        94 ~l~~~~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~-~~~~--~~-----  165 (337)
T 3ble_A           94 GFVDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLED-WSNG--FR-----  165 (337)
T ss_dssp             EESSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEET-HHHH--HH-----
T ss_pred             EEccchhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE-CCCC--Cc-----
Confidence            8888877999999999998763322110                 023567778888877653221 0000  00     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCE-EEecCCCCccChhHHHHHHHhc-c-cCCCcEEEeeccccccccccCCCCcC
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRI-IIDPGLGFSKKAEHNLDILLGL-A-ASHAPILIGPSRKRFLGEICNRPSAD  433 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~I-ilDPgiGf~k~~~~~~~~lr~l-~-~~g~Pil~G~SrKsfi~~v~g~~~~~  433 (480)
                      .+     .+++.+.++.+.++|..  .| +-|- +|.. ++.+..++++.+ + .++.|+=+ +.          -   .
T Consensus       166 ~~-----~~~~~~~~~~~~~~Ga~--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~p~~~i~~-H~----------H---n  222 (337)
T 3ble_A          166 NS-----PDYVKSLVEHLSKEHIE--RIFLPDT-LGVL-SPEETFQGVDSLIQKYPDIHFEF-HG----------H---N  222 (337)
T ss_dssp             HC-----HHHHHHHHHHHHTSCCS--EEEEECT-TCCC-CHHHHHHHHHHHHHHCTTSCEEE-EC----------B---C
T ss_pred             CC-----HHHHHHHHHHHHHcCCC--EEEEecC-CCCc-CHHHHHHHHHHHHHhcCCCeEEE-Ee----------c---C
Confidence            00     25677888899999986  55 4465 3433 344555666666 2 23566532 11          0   1


Q ss_pred             cccHHHHHHHHHHHHcCCcEEEcC
Q 038230          434 ERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       434 ~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      ++ +...|-+..|++.||+++.+.
T Consensus       223 d~-GlA~AN~laAv~aGa~~vd~t  245 (337)
T 3ble_A          223 DY-DLSVANSLQAIRAGVKGLHAS  245 (337)
T ss_dssp             TT-SCHHHHHHHHHHTTCSEEEEB
T ss_pred             Cc-chHHHHHHHHHHhCCCEEEEe
Confidence            12 223334556777888887653

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=97.17  E-value=0.00069  Score=63.28  Aligned_cols=148  Identities=17%  Similarity=0.207  Sum_probs=93.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHH-HHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKV-ASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v-~~aa  305 (480)
                      +.+.+++++.++++. .|+|+|.+|.    |++        +..=.++|+.+++..  ++.||-+|.   ..++. ++++
T Consensus         9 ~~~~~~~~~~~~~~~-~~~diie~G~----p~~--------~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~   73 (211)
T 3f4w_A            9 ELTLPEAMVFMDKVV-DDVDIIEVGT----PFL--------IREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLL   73 (211)
T ss_dssp             SCCHHHHHHHHHHHG-GGCSEEEECH----HHH--------HHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh-cCccEEEeCc----HHH--------HhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHH
Confidence            457899999999985 8999999995    221        111124567777642  378887774   33555 8999


Q ss_pred             HHcCCCEEecCCCCC-CC-chHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          306 VGKGAHIVNDVSAGQ-LD-PDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       306 L~~G~~iINdVsg~~-~d-~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      .++|++.|.-..... .+ .++.+.++++|..+++ +..   |.+                   ..+.++.+.+.|.+  
T Consensus        74 ~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~---~~t-------------------~~~~~~~~~~~g~d--  129 (211)
T 3f4w_A           74 FDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMIC---VDD-------------------LPARVRLLEEAGAD--  129 (211)
T ss_dssp             HHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT---CSS-------------------HHHHHHHHHHHTCC--
T ss_pred             HhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecC---CCC-------------------HHHHHHHHHHcCCC--
Confidence            999999887443221 11 5678888999988876 222   211                   12455666778887  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhcc-c-CCCcEEEe
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGLA-A-SHAPILIG  416 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l~-~-~g~Pil~G  416 (480)
                      -|.++||++-.+.....++.+++++ . .++|+.++
T Consensus       130 ~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~  165 (211)
T 3f4w_A          130 MLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVA  165 (211)
T ss_dssp             EEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEE
T ss_pred             EEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEE
Confidence            5899987531111111345566652 3 47888765

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=97.15  E-value=0.064  Score=52.35  Aligned_cols=205  Identities=20%  Similarity=0.262  Sum_probs=124.7

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C-CCCCCCHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTR--P-MATKISAEKELER  273 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P-~a~~v~~~eE~~r  273 (480)
                      .+.+++..++.+  +.|+.-.|..-          |.+.|++.|+++.+.||+++=.+.-..|  | +.... .++.++.
T Consensus        12 ~i~i~~~~iG~~--~~vIAgpc~~~----------~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~-~~egl~~   78 (262)
T 1zco_A           12 VVKINDVKFGEG--FTIIAGPCSIE----------SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGY-GEKALRW   78 (262)
T ss_dssp             CEEETTEEETSS--CEEEEECSBCC----------CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCC-THHHHHH
T ss_pred             eEEECCEEECCC--cEEEEeCCCCC----------CHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCc-cHHHHHH
Confidence            355666665554  55665446553          6899999999999999999988753222  1 11111 1444544


Q ss_pred             HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230          274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~  352 (480)
                      +..+   .++    .++|+.-|-++++.++.+.+. ++++- |.+.+ ....+++-+++.+.||++-.  |.-.|+    
T Consensus        79 l~~~---~~~----~Gl~~~te~~d~~~~~~l~~~-vd~~k-Iga~~~~n~~ll~~~a~~~kPV~lk~--G~~~t~----  143 (262)
T 1zco_A           79 MREA---ADE----YGLVTVTEVMDTRHVELVAKY-SDILQ-IGARNSQNFELLKEVGKVENPVLLKR--GMGNTI----  143 (262)
T ss_dssp             HHHH---HHH----HTCEEEEECCCGGGHHHHHHH-CSEEE-ECGGGTTCHHHHHHHTTSSSCEEEEC--CTTCCH----
T ss_pred             HHHH---HHH----cCCcEEEeeCCHHhHHHHHhh-CCEEE-ECcccccCHHHHHHHHhcCCcEEEec--CCCCCH----
Confidence            4332   333    389999999999999999888 88776 44433 23567888888999999832  332121    


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCC-CCcc-C-hh---HHHHHHHhcccCCCcEEEeecccccccc
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGL-GFSK-K-AE---HNLDILLGLAASHAPILIGPSRKRFLGE  425 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgi-Gf~k-~-~~---~~~~~lr~l~~~g~Pil~G~SrKsfi~~  425 (480)
                                  +.....++.+...|.+  ++++ -=|+ .|.+ + ..   ..+..+++  .+++|+++..|.      
T Consensus       144 ------------~e~~~Av~~i~~~Gn~--~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~--~~~~pVi~d~sH------  201 (262)
T 1zco_A          144 ------------QELLYSAEYIMAQGNE--NVILCERGIRTFETATRFTLDISAVPVVKE--LSHLPIIVDPSH------  201 (262)
T ss_dssp             ------------HHHHHHHHHHHTTTCC--CEEEEECCBCCSCCSSSSBCCTTHHHHHHH--HBSSCEEECSST------
T ss_pred             ------------HHHHHHHHHHHHCCCC--eEEEEECCCCCCCCcChhhcCHHHHHHHHh--hhCCCEEEEcCC------
Confidence                        2334566777888986  5555 4342 2211 1 11   23444443  358997654431      


Q ss_pred             ccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230          426 ICNRPSADERDPATIASITAGVLGGAN--IVRVH  457 (480)
Q Consensus       426 v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH  457 (480)
                      -.|.     |.....+ +..|+..||+  ++-+|
T Consensus       202 ~~g~-----~~~v~~~-~~aAva~Ga~Gl~iE~H  229 (262)
T 1zco_A          202 PAGR-----RSLVIPL-AKAAYAIGADGIMVEVH  229 (262)
T ss_dssp             TTCS-----GGGHHHH-HHHHHHTTCSEEEEEBC
T ss_pred             CCCc-----cchHHHH-HHHHHHcCCCEEEEEec
Confidence            1122     2222222 3347789999  99999

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=97.07  E-value=0.012  Score=56.92  Aligned_cols=158  Identities=11%  Similarity=0.191  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHH----------HHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAE----------KELERLIPVLEAVLTMPEMEGKLVSVDT-FYSK  300 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~----------eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~  300 (480)
                      +.+..++.++.+.+.|||+|.+|..-+.|-.+.--..          -..+.....++.+++.   .++|+-+-+ +++.
T Consensus        30 ~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~---~~~Pv~~m~~~~~~  106 (262)
T 1rd5_A           30 DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE---LSCPVVLLSYYKPI  106 (262)
T ss_dssp             CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG---CSSCEEEECCSHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHH
Confidence            3578899999999999999999975544433210000          0134456677888875   478887754 3442


Q ss_pred             ---HHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHH
Q 038230          301 ---VASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAEL  376 (480)
Q Consensus       301 ---v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~  376 (480)
                         .+++|.++|++.+--..... .-.+++..++++|..+++.-.   |.+..                   ++++.+.+
T Consensus       107 ~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a---~~t~~-------------------e~~~~~~~  164 (262)
T 1rd5_A          107 MFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTT---PAIPE-------------------DRMKEITK  164 (262)
T ss_dssp             HSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEEC---TTSCH-------------------HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEEC---CCCCH-------------------HHHHHHHh
Confidence               24558889999443222111 124678888999988765432   22211                   11112112


Q ss_pred             CCCCCCCEEEecCCCCc-c--C-hhHHHHHHHhc-ccCCCcEEEe
Q 038230          377 SGIPAWRIIIDPGLGFS-K--K-AEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       377 ~Gi~~~~IilDPgiGf~-k--~-~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      .+-  .-+++.+..|+. .  . ....++.++++ +..++|+++|
T Consensus       165 ~~~--g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vg  207 (262)
T 1rd5_A          165 ASE--GFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVG  207 (262)
T ss_dssp             HCC--SCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCC--CeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEE
Confidence            221  137777765542 1  1 13345667766 3468999986

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=97.06  E-value=0.012  Score=58.26  Aligned_cols=174  Identities=12%  Similarity=0.086  Sum_probs=109.6

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |+-.|+ |-..--+..++.++.++.++.+.+.|.++|.+|...+ |.  .++. +++++    +++.+++.   .+++++
T Consensus         7 i~d~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~--~~p~~~~~~e----~~~~i~~~---~~~~v~   76 (295)
T 1ydn_A            7 IVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVS-PK--WVPQLADSRE----VMAGIRRA---DGVRYS   76 (295)
T ss_dssp             EEECTTTHHHHTSSSCCCHHHHHHHHHHHTTTTCSEEEEEECSC-TT--TCGGGTTHHH----HHHHSCCC---SSSEEE
T ss_pred             EEECCCCccccCCCCCcCHHHHHHHHHHHHHcCcCEEEEccCcC-cc--ccccccCHHH----HHHHHHhC---CCCEEE
Confidence            555564 4333334458899999999999999999999996443 21  1211 13333    34555544   378887


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecCC-CC----------CCC------chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDVS-AG----------QLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdVs-g~----------~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      +=+.+.+-++.|+++|++.|.=.. +.          ..+      .++++.++++|..|.  +++.-|-|...  +.+ 
T Consensus        77 ~l~~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~--~~~-  153 (295)
T 1ydn_A           77 VLVPNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDG--PVT-  153 (295)
T ss_dssp             EECSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTE--ECC-
T ss_pred             EEeCCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCC--CCC-
Confidence            777999999999999998665221 11          111      235788889999887  66654433211  111 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc-cC-CCcEE
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA-AS-HAPIL  414 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~-~~-g~Pil  414 (480)
                               .+++.+.++.+.+.|++.-. +-|. .|. .++.+..++++.++ .. +.|+-
T Consensus       154 ---------~~~~~~~~~~~~~~G~d~i~-l~Dt-~G~-~~P~~~~~lv~~l~~~~~~~~l~  203 (295)
T 1ydn_A          154 ---------PQAVASVTEQLFSLGCHEVS-LGDT-IGR-GTPDTVAAMLDAVLAIAPAHSLA  203 (295)
T ss_dssp             ---------HHHHHHHHHHHHHHTCSEEE-EEET-TSC-CCHHHHHHHHHHHHTTSCGGGEE
T ss_pred             ---------HHHHHHHHHHHHhcCCCEEE-ecCC-CCC-cCHHHHHHHHHHHHHhCCCCeEE
Confidence                     15566777888889997322 3475 444 35667778888772 23 35653

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=97.05  E-value=0.023  Score=56.74  Aligned_cols=165  Identities=12%  Similarity=0.109  Sum_probs=103.6

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK-ISAEKELERLIPVLEAVLTMPEMEGKLVS  293 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~-v~~~eE~~rl~~vi~~l~~~~~~~~~pIS  293 (480)
                      |+-.|+ |-+.--+..++.++-++.++.+.+.|.++|++|.-+. |...+ ....+|      +++.+.+.   .++.++
T Consensus         9 i~DtTlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~~~d~~~------~~~~~~~~---~~~~~~   78 (307)
T 1ydo_A            9 IKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVH-PKWIPALRDAID------VAKGIDRE---KGVTYA   78 (307)
T ss_dssp             EEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSC-TTTCGGGTTHHH------HHHHSCCC---TTCEEE
T ss_pred             EEECCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC-cccccccCCHHH------HHHHhhhc---CCCeEE
Confidence            445554 5444445668999999999999999999999996322 22111 111122      23445543   377787


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecCCCCCC---------C--------chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDVSAGQL---------D--------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL  354 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdVsg~~~---------d--------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~  354 (480)
                      .=+.+.+-++.|+++|++.|+=......         .        .++++.++++|..+.  ++..-|-|...  +.+ 
T Consensus        79 ~l~~~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~-  155 (307)
T 1ydo_A           79 ALVPNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVP-  155 (307)
T ss_dssp             EECCSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCC-
T ss_pred             EEeCCHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCC-
Confidence            7778999999999999998873322210         0        346788889998764  44444434211  111 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhc
Q 038230          355 QYDDVCKQVASELYSKVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l  406 (480)
                               .+++.+.++.+.++|..  .|. -|- +|.. ++.+..++++.+
T Consensus       156 ---------~~~~~~~~~~~~~~Ga~--~i~l~DT-~G~~-~P~~v~~lv~~l  195 (307)
T 1ydo_A          156 ---------IEQVIRLSEALFEFGIS--ELSLGDT-IGAA-NPAQVETVLEAL  195 (307)
T ss_dssp             ---------HHHHHHHHHHHHHHTCS--CEEEECS-SCCC-CHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhcCCC--EEEEcCC-CCCc-CHHHHHHHHHHH
Confidence                     15667788888899986  453 454 4433 355556677766

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=97.00  E-value=0.17  Score=49.71  Aligned_cols=209  Identities=19%  Similarity=0.209  Sum_probs=128.6

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---CCCCCHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM---ATKISAEKELER  273 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~---a~~v~~~eE~~r  273 (480)
                      .+.+++..++.+ ++.|+.-..          ...|.+.+++.|++..+.||+++=.+....|..   .... .++.++.
T Consensus        26 ~i~i~~~~iG~~-~~~vIAgpc----------~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~-g~~gl~~   93 (276)
T 1vs1_A           26 VVEVEGVRIGGG-SKAVIAGPC----------SVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL-GLEGLKL   93 (276)
T ss_dssp             CEEETTEEEBTT-BCEEEEECS----------BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC-THHHHHH
T ss_pred             EEEECCEEECCC-CeEEEEecC----------CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC-CHHHHHH
Confidence            355666666554 566665333          124789999999999999999988886554431   1121 2445554


Q ss_pred             HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230          274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~  352 (480)
                      +..+   .++.    ++|+.-+-++++.++...+. ++++- |.+.+ .+..+++.+++.+.||++-.  |+-.|+    
T Consensus        94 l~~~---~~~~----Gl~~~te~~d~~~~~~l~~~-vd~~k-Igs~~~~n~~ll~~~a~~~kPV~lk~--G~~~t~----  158 (276)
T 1vs1_A           94 LRRA---GDEA----GLPVVTEVLDPRHVETVSRY-ADMLQ-IGARNMQNFPLLREVGRSGKPVLLKR--GFGNTV----  158 (276)
T ss_dssp             HHHH---HHHH----TCCEEEECCCGGGHHHHHHH-CSEEE-ECGGGTTCHHHHHHHHHHTCCEEEEC--CTTCCH----
T ss_pred             HHHH---HHHc----CCcEEEecCCHHHHHHHHHh-CCeEE-ECcccccCHHHHHHHHccCCeEEEcC--CCCCCH----
Confidence            4333   3333    89999999999999999888 88886 44433 34668999999999999843  322121    


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec-CC-CC-c-cChhHHHHHHHhcc-cCCCcEEEeecccccccccc
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP-GL-GF-S-KKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEIC  427 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP-gi-Gf-~-k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~  427 (480)
                                  +.....++.+...|-+  +|+|== |+ .| . ....-|+..+..++ .+++|++ |-|--+     .
T Consensus       159 ------------~ei~~Ave~i~~~Gn~--~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi-~dssH~-----~  218 (276)
T 1vs1_A          159 ------------EELLAAAEYILLEGNW--QVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVI-VDPSHP-----A  218 (276)
T ss_dssp             ------------HHHHHHHHHHHHTTCC--CEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEE-ECCHHH-----H
T ss_pred             ------------HHHHHHHHHHHHcCCC--eEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEE-EeCCCC-----C
Confidence                        3345667777888986  666643 65 45 2 22223344444442 3589964 333111     1


Q ss_pred             CCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          428 NRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       428 g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      |     .|.....+ +..|+..||+  +|-+|-
T Consensus       219 g-----~~~~~~~~-~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          219 G-----RRSLVPAL-AKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             C-----SGGGHHHH-HHHHHHTTCSEEEEEBCS
T ss_pred             C-----ccchHHHH-HHHHHHcCCCEEEEEecC
Confidence            2     23222222 2334668999  999993

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=96.92  E-value=0.019  Score=58.08  Aligned_cols=189  Identities=15%  Similarity=0.093  Sum_probs=110.8

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CC---CHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT---KISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TF---YSK  300 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~---~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~---~~~  300 (480)
                      +..++.++-++.++.+.+.|+++|.+|-....|++.   ....+.+++++    +.+++..  .+++++.= ..   ..+
T Consensus        24 ~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l----~~i~~~~--~~~~i~~l~~p~~~~~~   97 (345)
T 1nvm_A           24 RHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYI----EAVAGEI--SHAQIATLLLPGIGSVH   97 (345)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHH----HHHHTTC--SSSEEEEEECBTTBCHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHH----HHHHhhC--CCCEEEEEecCCcccHH
Confidence            345789999999999999999999998222222221   11122345544    3344432  36676654 22   578


Q ss_pred             HHHHHHHcCCCEEecCCCCC---CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230          301 VASEAVGKGAHIVNDVSAGQ---LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS  377 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~---~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~  377 (480)
                      -+++|.++|++.+.=....+   .-.+..+.++++|..++...+.. +.+.               .+++.+.++.+.++
T Consensus        98 ~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a-~~~~---------------~e~~~~ia~~~~~~  161 (345)
T 1nvm_A           98 DLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS-HMIP---------------AEKLAEQGKLMESY  161 (345)
T ss_dssp             HHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST-TSSC---------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeC-CCCC---------------HHHHHHHHHHHHHC
Confidence            89999999988654222221   12567888899998887654321 2110               15667788888888


Q ss_pred             CCCCCCEE-EecCCCCccChhHHHHHHHhc-ccC--CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcE
Q 038230          378 GIPAWRII-IDPGLGFSKKAEHNLDILLGL-AAS--HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANI  453 (480)
Q Consensus       378 Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l-~~~--g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~I  453 (480)
                      |+.  .|. -|- .|... +.+..++++.+ +..  +.|+-+ |.          -   .++ +...|-+..|++.||++
T Consensus       162 Ga~--~i~l~DT-~G~~~-P~~v~~lv~~l~~~~~~~~pi~~-H~----------H---n~~-G~avAn~laA~~aGa~~  222 (345)
T 1nvm_A          162 GAT--CIYMADS-GGAMS-MNDIRDRMRAFKAVLKPETQVGM-HA----------H---HNL-SLGVANSIVAVEEGCDR  222 (345)
T ss_dssp             TCS--EEEEECT-TCCCC-HHHHHHHHHHHHHHSCTTSEEEE-EC----------B---CTT-SCHHHHHHHHHHTTCCE
T ss_pred             CCC--EEEECCC-cCccC-HHHHHHHHHHHHHhcCCCceEEE-EE----------C---CCc-cHHHHHHHHHHHcCCCE
Confidence            986  332 232 34443 55556667766 233  677654 11          0   112 22333345677778877


Q ss_pred             EEcC
Q 038230          454 VRVH  457 (480)
Q Consensus       454 lRvH  457 (480)
                      +.+.
T Consensus       223 vd~t  226 (345)
T 1nvm_A          223 VDAS  226 (345)
T ss_dssp             EEEB
T ss_pred             EEec
Confidence            7653

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=96.87  E-value=0.01  Score=58.28  Aligned_cols=101  Identities=18%  Similarity=0.311  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHH--------------HHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKEL--------------ERLIPVLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~--------------~rl~~vi~~l~~~~~~~~~pISIDT  296 (480)
                      -+.+..++.++.+.+. ||+|.||..-+.|-++    ...+              +.+...++.+++.   .++||-+=+
T Consensus        27 P~~~~~~~~~~~l~~~-aD~IElG~PfsdP~ad----Gp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~   98 (271)
T 1ujp_A           27 PSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGD----GPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMT   98 (271)
T ss_dssp             SCHHHHHHHHHHHGGG-CSSEEEECCCCC--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEEC
T ss_pred             CChHHHHHHHHHHHhc-CCEEEECCCCCCcccc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEe
Confidence            3667888888999888 9999999865555332    1222              3455677788765   478877755


Q ss_pred             CCH--------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230          297 FYS--------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       297 ~~~--------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh  340 (480)
                      |..        +-+++|.++|++  ++.|+.-++ ..++.+.++++|..+|.+-
T Consensus        99 y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee-~~~~~~~~~~~gl~~i~li  151 (271)
T 1ujp_A           99 YLNPVLAWGPERFFGLFKQAGATGVILPDLPPDE-DPGLVRLAQEIGLETVFLL  151 (271)
T ss_dssp             CHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGG-CHHHHHHHHHHTCEEECEE
T ss_pred             cCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHH-HHHHHHHHHHcCCceEEEe
Confidence            433        345667778998  455555322 4678999999998877443

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=96.79  E-value=0.022  Score=55.47  Aligned_cols=159  Identities=16%  Similarity=0.273  Sum_probs=100.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHcCCcCCCCeEEEeCCCHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER-------LIPVLEAVLTMPEMEGKLVSVDTFYSKVA  302 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r-------l~~vi~~l~~~~~~~~~pISIDT~~~~v~  302 (480)
                      +-+.+.-++.++.|.++|||+|.+|...+-|-++.-.-++--.|       +..+++.+++..  ..+|+.+=||..-+.
T Consensus        24 ~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r--~~~Pivlm~Y~N~i~  101 (252)
T 3tha_A           24 YPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIK--TKKALVFMVYYNLIF  101 (252)
T ss_dssp             SSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC--CSSEEEEECCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh--cCCCEEEEeccCHHH
Confidence            45889999999999999999999999888887664333322211       233444444431  247999988866554


Q ss_pred             H--------HHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHH
Q 038230          303 S--------EAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVR  372 (480)
Q Consensus       303 ~--------aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~  372 (480)
                      .        .|.++|++  ||.|+--++ .+++.+.+++||..+|.+-.   |.|.                   .++++
T Consensus       102 ~~G~e~F~~~~~~aGvdG~IipDLP~eE-~~~~~~~~~~~Gl~~I~lva---P~t~-------------------~eRi~  158 (252)
T 3tha_A          102 SYGLEKFVKKAKSLGICALIVPELSFEE-SDDLIKECERYNIALITLVS---VTTP-------------------KERVK  158 (252)
T ss_dssp             HHCHHHHHHHHHHTTEEEEECTTCCGGG-CHHHHHHHHHTTCEECEEEE---TTSC-------------------HHHHH
T ss_pred             HhhHHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHcCCeEEEEeC---CCCc-------------------HHHHH
Confidence            4        44556877  788886543 57899999999998886553   2221                   13333


Q ss_pred             HHHHC--CCCCCCEEEecCCCC-ccCh---hHHHHHHHhcc-cCCCcEEEee
Q 038230          373 DAELS--GIPAWRIIIDPGLGF-SKKA---EHNLDILLGLA-ASHAPILIGP  417 (480)
Q Consensus       373 ~a~~~--Gi~~~~IilDPgiGf-~k~~---~~~~~~lr~l~-~~g~Pil~G~  417 (480)
                      +..+.  |+    |+.=...|. |...   ..-.+++++++ ..+.|+++|.
T Consensus       159 ~ia~~a~gF----iY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGf  206 (252)
T 3tha_A          159 KLVKHAKGF----IYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGF  206 (252)
T ss_dssp             HHHTTCCSC----EEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEES
T ss_pred             HHHHhCCCe----EEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence            33333  44    666554443 2221   12245566663 4689999985

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*

Probab=96.56  E-value=0.55  Score=48.32  Aligned_cols=243  Identities=15%  Similarity=0.193  Sum_probs=146.0

Q ss_pred             ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230          196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI  275 (480)
Q Consensus       196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~  275 (480)
                      +...+|+..++.+.++.|=--.| |+        -.|.+.-+++++++.++|++++=|-.    |      .+++.+-+.
T Consensus         9 r~V~VG~v~IGG~~PI~VQSMtn-T~--------T~Dv~aTv~QI~~L~~aG~eiVRvaV----p------~~~~A~al~   69 (406)
T 4g9p_A            9 PTVYVGRVPIGGAHPIAVQSMTN-TP--------TRDVEATTAQVLELHRAGSEIVRLTV----N------DEEAAKAVP   69 (406)
T ss_dssp             CCEEETTEEESTTSCCEEEEECC-SC--------TTCHHHHHHHHHHHHHHTCSEEEEEC----C------SHHHHHHHH
T ss_pred             eeEEEcCEeeCCCCceeeeecCC-CC--------cccHHHHHHHHHHHHHcCCCEEEEec----C------CHHHHHhHH
Confidence            34567788887766655544444 33        47899999999999999999999854    2      245666666


Q ss_pred             HHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHH---HcCCCEEecCCCCCCC---------chHHHHHHhcCCCEEEEcCC
Q 038230          276 PVLEAVLTMPEMEGKLVSVDT-FYSKVASEAV---GKGAHIVNDVSAGQLD---------PDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL---~~G~~iINdVsg~~~d---------~~m~~l~~~~~~~vVlmh~~  342 (480)
                      .+.+.+....  .++||.-|- |++..+.++.   +.|.+-+- |+.++.-         .++++.|+++++++=+=-+.
T Consensus        70 ~I~~~l~~~~--~~vPLVADiHF~~~~al~a~~~~a~~~dkiR-INPGNig~~~k~~e~~~~vv~~ak~~~~pIRIGVN~  146 (406)
T 4g9p_A           70 EIKRRLLAEG--VEVPLVGDFHFNGHLLLRKYPKMAEALDKFR-INPGTLGRGRHKDEHFAEMIRIAMDLGKPVRIGANW  146 (406)
T ss_dssp             HHHHHHHHTT--CCCCEEEECCSSHHHHHHHCHHHHHHCSEEE-ECTTSSCSTHHHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred             HHHHHHHhcC--CCCceEeeecccHHHHHHHHHHHHhHHhhcc-cCccccCccccHHHHHHHHHHHHHHccCCceecccc
Confidence            6666665542  489998885 6777776543   33555432 3333321         25889999999998764433


Q ss_pred             CC-CCccc-cc-------cc-cchhh-HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCC
Q 038230          343 GD-PSTMQ-NE-------EN-LQYDD-VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASH  410 (480)
Q Consensus       343 g~-p~~~~-~~-------~~-~~~~~-v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g  410 (480)
                      |. .+..- +.       +. ..+.. ..+.+.+...+.++.+++.|+..++|++=-   =+.+....++..|.| +..+
T Consensus       147 GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eamVeSAl~~~~~~~~~~f~~~~iviS~---KaSdv~~~i~aYr~la~~~d  223 (406)
T 4g9p_A          147 GSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSA---KVSKARDLVWVYRELARRTQ  223 (406)
T ss_dssp             GGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE---ECSSHHHHHHHHHHHHHHCC
T ss_pred             ccccHHHHHHhhcccccCCCccchhhhHHHHHHHHHHHHHHHHHHcCCChhheEEEe---ecCCHHHHHHHHHHHHHhCC
Confidence            32 21110 00       00 01112 223456667777888999999888998843   122334444555555 4579


Q ss_pred             CcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-----hHHHHHHHHHHHHH
Q 038230          411 APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVH---N-----IRDNLDAVKLCDSM  472 (480)
Q Consensus       411 ~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-----V~e~~~al~~~~ai  472 (480)
                      ||+-+|+.         +.-...+-..-+++....++..| .|-|||-   |     ++|.+-+..+.+++
T Consensus       224 yPLHLGvT---------EAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~dP~e~~~~EV~va~~ILqsl  285 (406)
T 4g9p_A          224 APLHLGLT---------EAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQAL  285 (406)
T ss_dssp             SCBEECCT---------TCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCCTTSCTTHHHHHHHHHHHHT
T ss_pred             CCceeeee---------cCCCcccceechHHHHHHHHhccCchhEEeeccCCCCcccHHHHHHHHHHHHHh
Confidence            99999974         32111111122344445566677 7999993   3     23666555555554

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.49  E-value=0.02  Score=53.03  Aligned_cols=90  Identities=24%  Similarity=0.356  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKG  309 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G  309 (480)
                      .+.+++.+.++.+.+.|+++|.+....  |+     ..+       .++.+++... .+.+|.++| .+++.+++|+++|
T Consensus        19 ~~~~~~~~~~~~~~~~G~~~iev~~~~--~~-----~~~-------~i~~ir~~~~-~~~~ig~~~v~~~~~~~~a~~~G   83 (205)
T 1wa3_A           19 NSVEEAKEKALAVFEGGVHLIEITFTV--PD-----ADT-------VIKELSFLKE-KGAIIGAGTVTSVEQCRKAVESG   83 (205)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS--TT-----HHH-------HHHHTHHHHH-TTCEEEEESCCSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC--hh-----HHH-------HHHHHHHHCC-CCcEEEecccCCHHHHHHHHHcC
Confidence            357889999999999999999997642  32     111       2333443211 157899977 7899999999999


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +|+|  ++... .+++++.++++|.+++.
T Consensus        84 ad~i--v~~~~-~~~~~~~~~~~g~~vi~  109 (205)
T 1wa3_A           84 AEFI--VSPHL-DEEISQFCKEKGVFYMP  109 (205)
T ss_dssp             CSEE--ECSSC-CHHHHHHHHHHTCEEEC
T ss_pred             CCEE--EcCCC-CHHHHHHHHHcCCcEEC
Confidence            9999  66543 68899999999999874

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=96.39  E-value=0.0094  Score=57.45  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=58.4

Q ss_pred             HHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecCC
Q 038230          240 VRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDVS  317 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdVs  317 (480)
                      ++.+.++|||+|.||+ |     ..++    .+.+..+++.+++.    ++|+-+=+|+++.+    .+|+|  +|.|+-
T Consensus        26 ~~~l~~~GaD~IelG~-S-----~g~t----~~~~~~~v~~ir~~----~~Pivl~~y~~n~i----~~gvDg~iipdLp   87 (234)
T 2f6u_A           26 IKAVADSGTDAVMISG-T-----QNVT----YEKARTLIEKVSQY----GLPIVVEPSDPSNV----VYDVDYLFVPTVL   87 (234)
T ss_dssp             HHHHHTTTCSEEEECC-C-----TTCC----HHHHHHHHHHHTTS----CCCEEECCSSCCCC----CCCSSEEEEEEET
T ss_pred             HHHHHHcCCCEEEECC-C-----CCCC----HHHHHHHHHHhcCC----CCCEEEecCCcchh----hcCCCEEEEcccC
Confidence            5788999999999998 3     2333    45666778888762    89999999995333    56877  888887


Q ss_pred             CCCCCchHH-----HHH-------HhcC-----CCEEE
Q 038230          318 AGQLDPDMY-----KVV-------AGLK-----VPYVA  338 (480)
Q Consensus       318 g~~~d~~m~-----~l~-------~~~~-----~~vVl  338 (480)
                      .++ +++..     +.+       ++||     ..+|.
T Consensus        88 ~ee-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~  124 (234)
T 2f6u_A           88 NSA-DGDWITGKHAQWVRMHYENLQKFTEIIESEFIQI  124 (234)
T ss_dssp             TBS-BGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEE
T ss_pred             CCC-CHHHHhhhHHHHHHhhhhhHHHcCCcccceeeee
Confidence            654 56666     555       7788     66665

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.36  E-value=0.055  Score=49.98  Aligned_cols=96  Identities=24%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCC-HHH-HHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFY-SKV-ASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~-~~v-~~aa  305 (480)
                      +.+.+++++.++++.+ |+++|+||..-.-+            .=..+|+.|++..  .+.|+-+|  +++ ++. ++.|
T Consensus         9 ~~~~~~~~~~~~~~~~-~v~~iev~~~~~~~------------~g~~~i~~l~~~~--~~~~i~~~l~~~di~~~~~~~a   73 (207)
T 3ajx_A            9 LLSTEAALELAGKVAE-YVDIIELGTPLIKA------------EGLSVITAVKKAH--PDKIVFADMKTMDAGELEADIA   73 (207)
T ss_dssp             CSCHHHHHHHHHHHGG-GCSEEEECHHHHHH------------HCTHHHHHHHHHS--TTSEEEEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhc-cCCEEEECcHHHHh------------hCHHHHHHHHHhC--CCCeEEEEEEecCccHHHHHHH
Confidence            3578999999999877 99999998531000            0012466666542  25665543  345 555 8999


Q ss_pred             HHcCCCEEe-cCCCCCC-CchHHHHHHhcCCCEEE-Ec
Q 038230          306 VGKGAHIVN-DVSAGQL-DPDMYKVVAGLKVPYVA-MH  340 (480)
Q Consensus       306 L~~G~~iIN-dVsg~~~-d~~m~~l~~~~~~~vVl-mh  340 (480)
                      +++|++.+. ....... -.+..+.++++|..+.+ ++
T Consensus        74 ~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~  111 (207)
T 3ajx_A           74 FKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLI  111 (207)
T ss_dssp             HHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             HhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEe
Confidence            999999997 2322110 13456777788888633 54

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=96.32  E-value=0.076  Score=52.62  Aligned_cols=194  Identities=15%  Similarity=0.120  Sum_probs=106.4

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      |+-.|| |-+---+..++.++-++.++.+.+.|.+.|++|.    |.+    .+.+++++..+.+.+.      +..++.
T Consensus         8 I~DttlRDG~Q~~~~~~~~~~K~~i~~~L~~~Gv~~IE~g~----p~~----~~~d~e~v~~i~~~~~------~~~i~~   73 (293)
T 3ewb_X            8 FFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGF----PIS----SPGDFECVKAIAKAIK------HCSVTG   73 (293)
T ss_dssp             EEECTTTCCC-----CCCHHHHHHHHHHHHHHTCSEEEEEC----GGG----CHHHHHHHHHHHHHCC------SSEEEE
T ss_pred             EEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CccHHHHHHHHHHhcC------CCEEEE
Confidence            555554 3333335568899999999999999999999995    322    2356666655544332      344433


Q ss_pred             -eCCCHHHHHHHHH----cCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230          295 -DTFYSKVASEAVG----KGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEE  352 (480)
Q Consensus       295 -DT~~~~v~~aaL~----~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~  352 (480)
                       =-...+-++.|++    +|++.|+=..+.         +..        .++++.+++++..|......+ +     +.
T Consensus        74 l~~~~~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~-~-----~~  147 (293)
T 3ewb_X           74 LARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDA-T-----RS  147 (293)
T ss_dssp             EEESSHHHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETG-G-----GS
T ss_pred             EecCCHHHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccC-C-----CC
Confidence             2234556677777    487766522111         111        245667788888776543321 0     11


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc--ccCCCc-EEEeeccccccccccC
Q 038230          353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL--AASHAP-ILIGPSRKRFLGEICN  428 (480)
Q Consensus       353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l--~~~g~P-il~G~SrKsfi~~v~g  428 (480)
                      +          .+++.+.++.+.++|..  .|.| |- +|.. ++.+-.++++.+  ..++.+ +-+|+=       .  
T Consensus       148 ~----------~~~~~~~~~~~~~~G~~--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~~~~l~~H-------~--  204 (293)
T 3ewb_X          148 D----------RAFLIEAVQTAIDAGAT--VINIPDT-VGYT-NPTEFGQLFQDLRREIKQFDDIIFASH-------C--  204 (293)
T ss_dssp             C----------HHHHHHHHHHHHHTTCC--EEEEECS-SSCC-CHHHHHHHHHHHHHHCTTGGGSEEEEE-------C--
T ss_pred             C----------HHHHHHHHHHHHHcCCC--EEEecCC-CCCC-CHHHHHHHHHHHHHhcCCccCceEEEE-------e--
Confidence            1          15667888888999996  4443 53 3332 233444555555  233322 323321       0  


Q ss_pred             CCCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230          429 RPSADERDPATIASITAGVLGGANIVRV  456 (480)
Q Consensus       429 ~~~~~~r~~~t~a~~~~a~~~Ga~IlRv  456 (480)
                      -   .++ +...|-+..|++.|++.+.+
T Consensus       205 H---nd~-Gla~AN~laA~~aGa~~vd~  228 (293)
T 3ewb_X          205 H---DDL-GMATANALAAIENGARRVEG  228 (293)
T ss_dssp             B---CTT-SCHHHHHHHHHHTTCCEEEE
T ss_pred             C---CCc-ChHHHHHHHHHHhCCCEEEe
Confidence            0   122 22334456678899998854

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=96.27  E-value=0.065  Score=52.16  Aligned_cols=178  Identities=14%  Similarity=0.205  Sum_probs=111.3

Q ss_pred             CccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH
Q 038230          193 GMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE  272 (480)
Q Consensus       193 ~i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~  272 (480)
                      .+++...+++..++- .+|+|  ++-++.         .+.+++++.|++..+.|||+|.+=..-       ....+..+
T Consensus         3 ~m~~~v~v~~~~ig~-g~PkI--cvpl~~---------~t~~e~l~~a~~~~~~~aD~vElR~D~-------l~~~~~~~   63 (258)
T 4h3d_A            3 AMKRKVQVKNITIGE-GRPKI--CVPIIG---------KNKKDIIKEAKELKDACLDIIEWRVDF-------FENVENIK   63 (258)
T ss_dssp             -CCCCEEETTEEETS-SSCEE--EEEECC---------SSHHHHHHHHHHHTTSSCSEEEEEGGG-------CTTTTCHH
T ss_pred             CCcceEEEcCEEeCC-CCCEE--EEEeCC---------CCHHHHHHHHHHHhhcCCCEEEEeecc-------ccccCCHH
Confidence            356777788888765 47888  455565         578999999999999999999997532       11112244


Q ss_pred             HHHHHHHHHHcCCcCCCCeEEE--eCC------------CHHHHHHHHHcC-CCEEecCCCCCCC---chHHHHHHhcCC
Q 038230          273 RLIPVLEAVLTMPEMEGKLVSV--DTF------------YSKVASEAVGKG-AHIVNDVSAGQLD---PDMYKVVAGLKV  334 (480)
Q Consensus       273 rl~~vi~~l~~~~~~~~~pISI--DT~------------~~~v~~aaL~~G-~~iINdVsg~~~d---~~m~~l~~~~~~  334 (480)
                      .+...+..+++..  .++|+-+  =|.            +.+..+++++.| +++| ||--...+   +++.+.+.+.++
T Consensus        64 ~v~~~l~~lr~~~--~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~i-DvEl~~~~~~~~~l~~~a~~~~~  140 (258)
T 4h3d_A           64 EVKEVLYELRSYI--HDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLI-DVELFMGDEVIDEVVNFAHKKEV  140 (258)
T ss_dssp             HHHHHHHHHHHHC--TTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEE-EEEGGGCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc--CCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhh-HHhhhccHHHHHHHHHHHHhCCC
Confidence            5556666666532  2455433  221            234566777776 7777 45432211   345666778899


Q ss_pred             CEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-----c
Q 038230          335 PYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-----A  407 (480)
Q Consensus       335 ~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-----~  407 (480)
                      .+|+. |+ .++|..                 +.+.+++.++.+.|-+-=+|..     ..++.++++.+++-.     .
T Consensus       141 kiI~S~Hdf~~TP~~-----------------~el~~~~~~~~~~gaDIvKia~-----~~~~~~D~l~Ll~~~~~~~~~  198 (258)
T 4h3d_A          141 KVIISNHDFNKTPKK-----------------EEIVSRLCRMQELGADLPKIAV-----MPQNEKDVLVLLEATNEMFKI  198 (258)
T ss_dssp             EEEEEEEESSCCCCH-----------------HHHHHHHHHHHHTTCSEEEEEE-----CCSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCH-----------------HHHHHHHHHHHHhCCCEEEEEE-----ccCCHHHHHHHHHHHHHHHHh
Confidence            99986 43 455531                 3456778888888854224443     457888888877543     2


Q ss_pred             cCCCcEE
Q 038230          408 ASHAPIL  414 (480)
Q Consensus       408 ~~g~Pil  414 (480)
                      ..+.|++
T Consensus       199 ~~~~P~I  205 (258)
T 4h3d_A          199 YADRPII  205 (258)
T ss_dssp             TCSSCBE
T ss_pred             cCCCCEE
Confidence            3577864

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=96.25  E-value=0.21  Score=49.48  Aligned_cols=210  Identities=14%  Similarity=0.127  Sum_probs=119.9

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CC---CCCCCC-CCCCH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQ---STRPMA-TKISA  267 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~e---StrP~a-~~v~~  267 (480)
                      +.+++..++.+.++.|++=.|+-          -|.+.+++.|+++.+.||+.. +.      .+   .|.|++ .....
T Consensus         6 i~i~~~~iG~~~~~~vIAGpc~~----------~~~e~a~~~a~~lk~~ga~~~-~~~v~k~~f~k~prts~~sf~g~~l   74 (292)
T 1o60_A            6 VKIGNIDVANDKPFVLFGGMNVL----------ESRDMAMQVCEAYVKVTEKLG-VPYVFKASFDKANRSSIHSYRGPGM   74 (292)
T ss_dssp             EEETTEEECTTSCCEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHT-CCEEEEEESCCTTCSSTTSCCCSCH
T ss_pred             EEECCEEECCCCceEEEEecCCc----------cCHHHHHHHHHHHHHHhhhhC-EeEEEhhhcccCCCCChHHhhhhhH
Confidence            44566666666667776645543          378999999999999998753 22      11   233321 12223


Q ss_pred             HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCC
Q 038230          268 EKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPS  346 (480)
Q Consensus       268 ~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~  346 (480)
                      ++.++.+    ..+.+.   .++|+.-+-+++..++...+ +++++- |.+++ ..-++++-+++.+.||++-.  |+-.
T Consensus        75 ~~gl~~l----~~~~~~---~Glp~~te~~d~~~~~~l~~-~vd~~k-IgA~~~~n~~Ll~~~a~~~kPV~lk~--G~~~  143 (292)
T 1o60_A           75 EEGLKIF----QELKDT---FGVKIITDVHEIYQCQPVAD-VVDIIQ-LPAFLARQTDLVEAMAKTGAVINVKK--PQFL  143 (292)
T ss_dssp             HHHHHHH----HHHHHH---HCCEEEEECCSGGGHHHHHT-TCSEEE-ECGGGTTCHHHHHHHHHTTCEEEEEC--CTTS
T ss_pred             HHHHHHH----HHHHHH---cCCcEEEecCCHHHHHHHHh-cCCEEE-ECcccccCHHHHHHHHcCCCcEEEeC--CCCC
Confidence            4444443    333333   38999999999999999887 688876 44422 23558888889999999843  3222


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccC----hhHHHHHHHhcccCCCcEEEe--e---
Q 038230          347 TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKK----AEHNLDILLGLAASHAPILIG--P---  417 (480)
Q Consensus       347 ~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~----~~~~~~~lr~l~~~g~Pil~G--~---  417 (480)
                      +++                .....++.+...|-+ +=+++-=|..|..+    .-.++..+++ ..+++|+.+=  +   
T Consensus       144 t~~----------------ei~~Av~~i~~~Gn~-~i~L~~rg~~~~y~~~~~dl~~i~~lk~-~~~~~pV~~D~sH~~q  205 (292)
T 1o60_A          144 SPS----------------QMGNIVEKIEECGND-KIILCDRGTNFGYDNLIVDMLGFSVMKK-ASKGSPVIFDVTHSLQ  205 (292)
T ss_dssp             CGG----------------GHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHHHHHHH-HTTSCCEEEEHHHHCC
T ss_pred             CHH----------------HHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHHHHHHh-hCCCCCEEEECCCccc
Confidence            221                123446677788876 22445556544221    1123444443 1238998772  1   


Q ss_pred             ----ccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230          418 ----SRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVH  457 (480)
Q Consensus       418 ----SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH  457 (480)
                          |.|+..|         +|.... .++..|+..||+  +|-+|
T Consensus       206 ~p~~~~~~~~g---------~~~~~~-~ia~aAva~Ga~Gl~IE~H  241 (292)
T 1o60_A          206 CRDPFGAASSG---------RRAQVT-ELARSGLAVGIAGLFLEAH  241 (292)
T ss_dssp             ---------------------CTTHH-HHHHHHHHHCCSEEEEEEE
T ss_pred             ccCccccCCCC---------ChhHHH-HHHHHHHHcCCCEEEEEec
Confidence                3333321         232222 223345568999  99999

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.20  E-value=0.25  Score=46.92  Aligned_cols=107  Identities=11%  Similarity=0.145  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHcCCcCCCCeEEEeCC-CH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVLEAVLTMPEMEGKLVSVDTF-YS  299 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi~~l~~~~~~~~~pISIDT~-~~  299 (480)
                      .+.+..++.++.+.+. ||+|-+|...+.|..+.-....          -+.....+++.+++.   +++||-+=++ ++
T Consensus        16 ~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~---~~~pv~~~~~~~~   91 (248)
T 1geq_A           16 PDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH---SSTPIVLMTYYNP   91 (248)
T ss_dssp             SCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---CCCCEEEEECHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---CCCCEEEEeccch
Confidence            3567899999999888 9999999755555433210000          133456788888876   3677766664 65


Q ss_pred             -------HHHHHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcC
Q 038230          300 -------KVASEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 -------~v~~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~  341 (480)
                             +.++.++++|++.|---+....+ .++.+.++++|..++++-+
T Consensus        92 ~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~  141 (248)
T 1geq_A           92 IYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAA  141 (248)
T ss_dssp             HHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEEC
T ss_pred             hhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEEC
Confidence                   78999999999977532211111 4688888999988876543

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=96.15  E-value=0.11  Score=55.66  Aligned_cols=186  Identities=12%  Similarity=0.062  Sum_probs=108.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----------
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----------  297 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----------  297 (480)
                      .++.++-++.|+.+.+.|.+.|++|+.++.... ..++ +++++++..+.+.+.      +..++.=++           
T Consensus        43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~-~d~~e~lr~l~~~~~------~~~l~~L~R~~N~~G~~~yp  115 (539)
T 1rqb_A           43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLN-EDPWERLRTFRKLMP------NSRLQMLLRGQNLLGYRHYN  115 (539)
T ss_dssp             CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCT------TSCEEEEECGGGTTSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccC-CCHHHHHHHHHHhCC------CCEEEEEeccccccCcccCc
Confidence            367888999999999999999999975541100 0111 245666655444322      344444222           


Q ss_pred             ---CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          298 ---YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       298 ---~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                         ...-+++++++|+++|.=..+.+.-   ...++.++++|..+  .++...+.+-+                .+++.+
T Consensus       116 ddv~~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~----------------~e~~~~  179 (539)
T 1rqb_A          116 DEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHT----------------VEGYVK  179 (539)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCC----------------HHHHHH
T ss_pred             ccccHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCC----------------HHHHHH
Confidence               2345788899999998844443322   34677788888876  35555443321                156678


Q ss_pred             HHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-c-cC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230          370 KVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-A-AS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITA  445 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~-~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~  445 (480)
                      .++.+.++|..  .|.| |- .|... +.+..++++.+ + .+ +.|+=+ |.          -   .++ +...|-+..
T Consensus       180 ~a~~l~~~Gad--~I~L~DT-~G~~~-P~~v~~lv~~l~~~~p~~i~I~~-H~----------H---nd~-GlAvAN~la  240 (539)
T 1rqb_A          180 LAGQLLDMGAD--SIALKDM-AALLK-PQPAYDIIKAIKDTYGQKTQINL-HC----------H---STT-GVTEVSLMK  240 (539)
T ss_dssp             HHHHHHHTTCS--EEEEEET-TCCCC-HHHHHHHHHHHHHHHCTTCCEEE-EE----------B---CTT-SCHHHHHHH
T ss_pred             HHHHHHHcCCC--EEEeCCC-CCCcC-HHHHHHHHHHHHHhcCCCceEEE-Ee----------C---CCC-ChHHHHHHH
Confidence            88888899985  4433 54 33332 34445566665 2 23 566532 11          0   122 223344556


Q ss_pred             HHHcCCcEEEcC
Q 038230          446 GVLGGANIVRVH  457 (480)
Q Consensus       446 a~~~Ga~IlRvH  457 (480)
                      |++.||+++.+.
T Consensus       241 AveAGa~~VD~t  252 (539)
T 1rqb_A          241 AIEAGVDVVDTA  252 (539)
T ss_dssp             HHHTTCSEEEEB
T ss_pred             HHHhCCCEEEEe
Confidence            778888887653

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.80  E-value=0.047  Score=51.39  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCH-HHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYS-KVASEA  305 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~-~v~~aa  305 (480)
                      +.+.+++++.+++ ++.|+|++++|.+-.            +..=.++|+.|++..  ++.|+-+|.   ..| ..++.+
T Consensus        15 ~~~~~~~~~~~~~-~~~~vd~ie~g~~~~------------~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~~~~   79 (218)
T 3jr2_A           15 QTNLTDAVAVASN-VASYVDVIEVGTILA------------FAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILSRMA   79 (218)
T ss_dssp             CSSHHHHHHHHHH-HGGGCSEEEECHHHH------------HHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHH-hcCCceEEEeCcHHH------------HhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHHHHH
Confidence            3578999999998 488999999995311            111124567777642  255666543   123 357888


Q ss_pred             HHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          306 VGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      .++|+++|.--......  .+.++.++++|+.+++ +-.   |.|.                    +.+..+.+.|++  
T Consensus        80 ~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~---~~T~--------------------~~~~~~~~~g~d--  134 (218)
T 3jr2_A           80 FEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYG---NWTM--------------------QDAKAWVDLGIT--  134 (218)
T ss_dssp             HHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCS---SCCH--------------------HHHHHHHHTTCC--
T ss_pred             HhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeee---cCCH--------------------HHHHHHHHcCcc--
Confidence            89999999744322111  3456678889987764 321   1121                    122233455875  


Q ss_pred             CEEEecCC--CC-c-cChhHHHHHHHhcccCCCcEEEe
Q 038230          383 RIIIDPGL--GF-S-KKAEHNLDILLGLAASHAPILIG  416 (480)
Q Consensus       383 ~IilDPgi--Gf-~-k~~~~~~~~lr~l~~~g~Pil~G  416 (480)
                      -+++=++.  +| + +-..+.++.+|++...++|+.++
T Consensus       135 ~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~~~~pi~v~  172 (218)
T 3jr2_A          135 QAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELSIT  172 (218)
T ss_dssp             EEEEECCHHHHHHTCCSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceeeeeccccccCCCcCCHHHHHHHHHHhCCCCCEEEE
Confidence            45553321  11 1 11234566777764457888764

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=95.69  E-value=0.14  Score=51.49  Aligned_cols=182  Identities=14%  Similarity=0.086  Sum_probs=105.2

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAV  306 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL  306 (480)
                      +..++.++-++.|+.+.+.|.+.|++|.    |.+    .+.+++++..+.+.+      .+..++.=+ .+.+-++.|+
T Consensus        22 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~----p~~----~~~d~e~v~~i~~~~------~~~~i~~l~r~~~~~i~~a~   87 (325)
T 3eeg_A           22 GCQLNTEEKIIVAKALDELGVDVIEAGF----PVS----SPGDFNSVVEITKAV------TRPTICALTRAKEADINIAG   87 (325)
T ss_dssp             ---CCTTHHHHHHHHHHHHTCSEEEEEC----TTS----CHHHHHHHHHHHHHC------CSSEEEEECCSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHhHHHHHHHHHHhC------CCCEEEEeecCCHHHHHHHH
Confidence            3457788999999999999999999994    322    235677765555433      255666544 5777788888


Q ss_pred             Hc----CCCEEecCCCCC-----------C------CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          307 GK----GAHIVNDVSAGQ-----------L------DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       307 ~~----G~~iINdVsg~~-----------~------d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                      ++    |++.|.-..+..           .      -.++++.+++++..++.-...+.      +.+          .+
T Consensus        88 ~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~------~~~----------~~  151 (325)
T 3eeg_A           88 EALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAG------RAD----------QA  151 (325)
T ss_dssp             HHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGG------GSC----------HH
T ss_pred             HhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccc------cch----------HH
Confidence            87    888765321110           0      02567888899988765332211      111          15


Q ss_pred             HHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCc-EEEeeccccccccccCCCCcCcccHHHHH
Q 038230          366 ELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAP-ILIGPSRKRFLGEICNRPSADERDPATIA  441 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~P-il~G~SrKsfi~~v~g~~~~~~r~~~t~a  441 (480)
                      ++.+.++.+.++|..  .|.| |- .|.. ++.+..++++.++  .++.+ +-+|+-       .      -+-.+...|
T Consensus       152 ~~~~~~~~~~~~G~~--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~~~~i~~H-------~------Hnd~GlA~A  214 (325)
T 3eeg_A          152 FLARMVEAVIEAGAD--VVNIPDT-TGYM-LPWQYGERIKYLMDNVSNIDKAILSAH-------C------HNDLGLATA  214 (325)
T ss_dssp             HHHHHHHHHHHHTCS--EEECCBS-SSCC-CHHHHHHHHHHHHHHCSCGGGSEEEEC-------B------CCTTSCHHH
T ss_pred             HHHHHHHHHHhcCCC--EEEecCc-cCCc-CHHHHHHHHHHHHHhCCCCCceEEEEE-------e------CCCCCHHHH
Confidence            667778888889986  3433 43 3332 2344455666652  23311 333331       0      111122334


Q ss_pred             HHHHHHHcCCcEEEc
Q 038230          442 SITAGVLGGANIVRV  456 (480)
Q Consensus       442 ~~~~a~~~Ga~IlRv  456 (480)
                      -+..|++.|++.+.+
T Consensus       215 N~laA~~aGa~~vd~  229 (325)
T 3eeg_A          215 NSLAALQNGARQVEC  229 (325)
T ss_dssp             HHHHHHHHTCCEEEE
T ss_pred             HHHHHHHhCCCEEEE
Confidence            456677889888765

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=95.64  E-value=0.31  Score=51.40  Aligned_cols=186  Identities=10%  Similarity=0.032  Sum_probs=108.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----------C
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----------Y  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----------~  298 (480)
                      .++.++-++.|+.+.+.|.+.|++|+.+|.... ..++ +++|+++..+.+.+      .+.+++.=+.          .
T Consensus        26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~-~d~~e~l~~i~~~~------~~~~l~~l~R~~N~~G~~~~~   98 (464)
T 2nx9_A           26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG-EDPWQRLRLLKQAM------PNTPLQMLLRGQNLLGYRHYA   98 (464)
T ss_dssp             CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC-CCHHHHHHHHHHHC------SSSCEEEEECGGGTTSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC-CCHHHHHHHHHHhC------CCCeEEEEeccccccCccccc
Confidence            367788899999999999999999975541100 0111 24566665444322      1444543332          1


Q ss_pred             ----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          299 ----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       299 ----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                          ..-+++|+++|+++|.=..+.+.-   ...++.++++|..+.  ++...|.+-+                .+++.+
T Consensus        99 ddv~~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~----------------~e~~~~  162 (464)
T 2nx9_A           99 DDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHN----------------LQTWVD  162 (464)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCC----------------HHHHHH
T ss_pred             chhhHHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCC----------------HHHHHH
Confidence                345678889999999844443322   346777888888764  3333443321                156678


Q ss_pred             HHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230          370 KVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV  447 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~  447 (480)
                      .++.+.++|..  .|. -|- .|... +.+..++++.+ +..+.|+=+ +.          -   .++ +...|-+..|+
T Consensus       163 ~a~~l~~~Gad--~I~l~DT-~G~~~-P~~v~~lv~~l~~~~~~~i~~-H~----------H---nd~-GlAvAN~laAv  223 (464)
T 2nx9_A          163 VAQQLAELGVD--SIALKDM-AGILT-PYAAEELVSTLKKQVDVELHL-HC----------H---STA-GLADMTLLKAI  223 (464)
T ss_dssp             HHHHHHHTTCS--EEEEEET-TSCCC-HHHHHHHHHHHHHHCCSCEEE-EE----------C---CTT-SCHHHHHHHHH
T ss_pred             HHHHHHHCCCC--EEEEcCC-CCCcC-HHHHHHHHHHHHHhcCCeEEE-EE----------C---CCC-ChHHHHHHHHH
Confidence            88888999986  453 354 33332 34445666666 234666532 10          0   112 22334455677


Q ss_pred             HcCCcEEEcC
Q 038230          448 LGGANIVRVH  457 (480)
Q Consensus       448 ~~Ga~IlRvH  457 (480)
                      +.||+++.+.
T Consensus       224 ~AGa~~VD~t  233 (464)
T 2nx9_A          224 EAGVDRVDTA  233 (464)
T ss_dssp             HTTCSEEEEB
T ss_pred             HhCCCEEEEe
Confidence            8888887654

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=95.60  E-value=0.27  Score=46.75  Aligned_cols=88  Identities=19%  Similarity=0.309  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-CHHHHHHHHHcCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-YSKVASEAVGKGA  310 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-~~~v~~aaL~~G~  310 (480)
                      +.+++++.++.+++.|+++|-+..-+  +.     ..+       .++.+++..  .++.+..+|. ..+-++.|+++|+
T Consensus        27 ~~~~~~~~~~al~~gGv~~iel~~k~--~~-----~~~-------~i~~l~~~~--~~l~vgaGtvl~~d~~~~A~~aGA   90 (224)
T 1vhc_A           27 NADDILPLADTLAKNGLSVAEITFRS--EA-----AAD-------AIRLLRANR--PDFLIAAGTVLTAEQVVLAKSSGA   90 (224)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEETTS--TT-----HHH-------HHHHHHHHC--TTCEEEEESCCSHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccC--ch-----HHH-------HHHHHHHhC--cCcEEeeCcEeeHHHHHHHHHCCC
Confidence            45779999999999999999998421  21     112       344444432  2566777774 7899999999999


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +.+  +++. .++++++.++++|.+++.
T Consensus        91 d~v--~~p~-~d~~v~~~ar~~g~~~i~  115 (224)
T 1vhc_A           91 DFV--VTPG-LNPKIVKLCQDLNFPITP  115 (224)
T ss_dssp             SEE--ECSS-CCHHHHHHHHHTTCCEEC
T ss_pred             CEE--EECC-CCHHHHHHHHHhCCCEEe
Confidence            999  6664 478889999999998875

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=95.45  E-value=1.6  Score=43.34  Aligned_cols=216  Identities=16%  Similarity=0.198  Sum_probs=121.4

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCE----EEeC-CC---CCCCC-CCCCCH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADM----IDIG-AQ---STRPM-ATKISA  267 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdi----IDIG-~e---StrP~-a~~v~~  267 (480)
                      .+.+++..++.+.+..++.    -|=|      .-|.+.+++.|+++.+.|+.+    +=-+ .+   -|.|+ ......
T Consensus        28 ~v~~~~i~~G~~~~l~vIa----GPCs------ies~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~   97 (298)
T 3fs2_A           28 TVKVGNVTFSNSAPLALIA----GPCQ------METRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGL   97 (298)
T ss_dssp             SEEETTEEECTTSCCEEEE----ECSB------CCCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCH
T ss_pred             eEEECCEEECCCCceEEEE----eCCc------CCCHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCH
Confidence            4566666666554544443    2322      246889999999999876432    2222 11   23332 122222


Q ss_pred             HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCC
Q 038230          268 EKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPS  346 (480)
Q Consensus       268 ~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~  346 (480)
                      ++-++.+    +.+.+.   .++|+.-+-++++.++...+. +|++- |.+++ ..-+++.-+++.+.||++--  |.--
T Consensus        98 ~~GL~~L----~~~~~e---~GLpv~Tev~D~~~v~~l~~~-vd~lk-IgA~~~~n~~LLr~va~~gkPVilK~--Gms~  166 (298)
T 3fs2_A           98 EKALEVF----SDLKKE---YGFPVLTDIHTEEQCAAVAPV-VDVLQ-IPAFLCRQTDLLIAAARTGRVVNVKK--GQFL  166 (298)
T ss_dssp             HHHHHHH----HHHHHH---HCCCEEEECCSHHHHHHHTTT-CSEEE-ECGGGTTCHHHHHHHHHTTSEEEEEC--CTTC
T ss_pred             HHHHHHH----HHHHHh---cCCeEEEEeCCHHHHHHHHhh-CCEEE-ECccccCCHHHHHHHHccCCcEEEeC--CCCC
Confidence            3445443    333333   389999999999999998887 88875 54432 23558888889999999843  3222


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccCh-hHHHHHHHhcccCCCcEEEeeccccccc
Q 038230          347 TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKA-EHNLDILLGLAASHAPILIGPSRKRFLG  424 (480)
Q Consensus       347 ~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~-~~~~~~lr~l~~~g~Pil~G~SrKsfi~  424 (480)
                      ++                +.+...++++.+.|-+  +|+| .=|+-|+.+. .-|+..+..++.+++|+.+=.|.     
T Consensus       167 t~----------------~ei~~ave~i~~~Gn~--~iiL~erg~~y~~~~~~vdl~~i~~lk~~~~PV~~D~sH-----  223 (298)
T 3fs2_A          167 AP----------------WDMKNVLAKITESGNP--NVLATERGVSFGYNTLVSDMRALPIMAGLGAPVIFDATH-----  223 (298)
T ss_dssp             CG----------------GGHHHHHHHHHTTTCC--CEEEEECCEECSSSCEECCTTHHHHHHTTTSCEEEEHHH-----
T ss_pred             CH----------------HHHHHHHHHHHHcCCC--eEEEEECCCCCCCCCCccCHHHHHHHHHcCCcEEEcCCC-----
Confidence            22                1224667777888876  6666 7677664222 11333333332369999762221     


Q ss_pred             cccCCC------CcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          425 EICNRP------SADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       425 ~v~g~~------~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                       -+.+|      ...+|.....+ +..|+..||+  +|-+|-
T Consensus       224 -svq~p~~~~~~s~G~r~~v~~~-a~AAvAlGAdGl~IE~H~  263 (298)
T 3fs2_A          224 -SVQQPGGQGGSTGGQREFVETL-ARAAVAVGVAGFFIETHE  263 (298)
T ss_dssp             -HTCCCC--------CGGGHHHH-HHHHHHHCCSEEEEEEES
T ss_pred             -ccccCCcccCCCCCchhhHHHH-HHHHHHcCCCEEEEEecC
Confidence             10111      01234443332 4457778999  999995

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=95.42  E-value=0.83  Score=44.89  Aligned_cols=216  Identities=12%  Similarity=0.094  Sum_probs=119.6

Q ss_pred             ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CC---CCCCC-CCCCCHHH
Q 038230          200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQ---STRPM-ATKISAEK  269 (480)
Q Consensus       200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~e---StrP~-a~~v~~~e  269 (480)
                      +++..++.+.++.|++=.|+-          -|.+.+++.|+++.+.||+.. +.      .+   .|.|+ ......++
T Consensus         5 i~~~~iG~~~~~~vIAGpc~~----------~~~e~a~~~a~~lk~~ga~~~-~~~v~k~~f~k~prts~~~~~g~~l~~   73 (280)
T 2qkf_A            5 INDITLGNNSPFVLFGGINVL----------ESLDSTLQTCAHYVEVTRKLG-IPYIFKASFDKANRSSIHSYRGVGLEE   73 (280)
T ss_dssp             ETTEEESTTSCCEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHT-CCEEEEEESCCSSCSSSSSCCCSCHHH
T ss_pred             eCCEEECCCCceEEEEecCCC----------CCHHHHHHHHHHHHHhhhhcc-eeEEEeeeeecCCCCChHHhhccchHH
Confidence            444555555667777744433          378999999999999998865 44      11   23332 22223344


Q ss_pred             HHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCcc
Q 038230          270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTM  348 (480)
Q Consensus       270 E~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~  348 (480)
                      .++.+..    +.+.   .++|+.-+-+++..++...+. ++++- |.+.. ..-++++-+++.+.||++-.  |+-.++
T Consensus        74 gl~~l~~----~~~~---~Gl~~~te~~d~~~~~~l~~~-~d~~k-Iga~~~~n~~ll~~~a~~~kPV~lk~--G~~~t~  142 (280)
T 2qkf_A           74 GLKIFEK----VKAE---FGIPVITDVHEPHQCQPVAEV-CDVIQ-LPAFLARQTDLVVAMAKTGNVVNIKK--PQFLSP  142 (280)
T ss_dssp             HHHHHHH----HHHH---HCCCEEEECCSGGGHHHHHHH-CSEEE-ECGGGTTBHHHHHHHHHTCCEEEEEC--CTTSCG
T ss_pred             HHHHHHH----HHHH---cCCcEEEecCCHHHHHHHHhh-CCEEE-ECcccccCHHHHHHHHcCCCcEEEEC--CCCCCH
Confidence            4544433    3333   389999999999999999888 88875 44322 23458888889999999843  322222


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccC----hhHHHHHHHhcccCCCcEEEeecccccc-
Q 038230          349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKK----AEHNLDILLGLAASHAPILIGPSRKRFL-  423 (480)
Q Consensus       349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~----~~~~~~~lr~l~~~g~Pil~G~SrKsfi-  423 (480)
                      +                .....++.+...|-+ +=+++-=|..|..+    ...++..+++ ..+++|+.+=.|.--.. 
T Consensus       143 ~----------------e~~~A~~~i~~~Gn~-~i~L~~rg~~~~~~~~~~dl~~i~~lk~-~~~~~pV~~D~sH~~q~~  204 (280)
T 2qkf_A          143 S----------------QMKNIVEKFHEAGNG-KLILCERGSSFGYDNLVVDMLGFGVMKQ-TCGNLPVIFDVTHSLQTR  204 (280)
T ss_dssp             G----------------GHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHHHHHHH-HTTTCCEEEEHHHHCC--
T ss_pred             H----------------HHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHHHHHHH-hCCCCCEEEECCCCcccc
Confidence            1                123446677788876 23444556545221    1123444544 22389987621110000 


Q ss_pred             ccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230          424 GEICNRPSADERDPATIASITAGVLGGAN--IVRVH  457 (480)
Q Consensus       424 ~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH  457 (480)
                      |. .|.....+|.... .++..|+..||+  +|-+|
T Consensus       205 ~~-~~~~s~g~~~~~~-~~a~aava~Ga~G~~IE~H  238 (280)
T 2qkf_A          205 DA-GSAASGGRRAQAL-DLALAGMATRLAGLFLESH  238 (280)
T ss_dssp             ---------CHHHHHH-HHHHHHHTTCCSEEEEEC-
T ss_pred             Cc-cccccCCchhhHH-HHHHHHHHcCCCEEEEeec
Confidence            00 0100011233322 223456678995  99999

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=95.35  E-value=1.2  Score=44.08  Aligned_cols=221  Identities=12%  Similarity=0.128  Sum_probs=118.3

Q ss_pred             cccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHc----CCCEEEeCC----CCCCCC-CCCCCHHH
Q 038230          199 PIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISE----GADMIDIGA----QSTRPM-ATKISAEK  269 (480)
Q Consensus       199 ~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~----GAdiIDIG~----eStrP~-a~~v~~~e  269 (480)
                      .+++..++-+.+..+|.    -|=|      .-+.+.+++.|+++.+.    |..++==+.    .-|.|+ ......++
T Consensus         6 ~~~~i~iG~~~~~~vIa----GPCs------ie~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~   75 (288)
T 3tml_A            6 KLCDFEVGLDQPFFLIA----GTCV------VESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDE   75 (288)
T ss_dssp             EETTEEESTTSCCEEEE----ECSB------CCCHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHH
T ss_pred             EECCEEECCCCceEEEE----eCCc------CCCHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHH
Confidence            34555555544544444    2311      13689999999999887    666553221    122232 11222234


Q ss_pred             HHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCcc
Q 038230          270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTM  348 (480)
Q Consensus       270 E~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~  348 (480)
                      -++.+    +.+.+.   .++|+.-+-++++.++...+. ++++- |.+++ ..-+++.-+++.+.||++-.  |.--++
T Consensus        76 GL~~L----~~~~~e---~Glp~~tev~d~~~v~~l~~~-vd~lk-IgA~~~~n~~LLr~~a~~gkPVilK~--G~~~t~  144 (288)
T 3tml_A           76 GLRIL----SEVKRQ---LGLPVLTDVHSIDEIEQVASV-VDVLQ-TPAFLCRQTDFIHACARSGKPVNIKK--GQFLAP  144 (288)
T ss_dssp             HHHHH----HHHHHH---HCCCEEEECCSGGGHHHHHHH-CSEEE-ECGGGTTCHHHHHHHHTSSSCEEEEC--CTTCCT
T ss_pred             HHHHH----HHHHHh---cCCeEEEEeCCHHHHHHHHHh-CCEEE-ECcccccCHHHHHHHHccCCcEEEeC--CCCCCH
Confidence            45443    333333   389999999999999999888 88886 54432 23568888889999999843  222121


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHCCC----CCCCEE-EecCCCCccCh-hHHHHHHHhcccCCCcEEEeecccc-
Q 038230          349 QNEENLQYDDVCKQVASELYSKVRDAELSGI----PAWRII-IDPGLGFSKKA-EHNLDILLGLAASHAPILIGPSRKR-  421 (480)
Q Consensus       349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi----~~~~Ii-lDPgiGf~k~~-~~~~~~lr~l~~~g~Pil~G~SrKs-  421 (480)
                                      +.+...++++.+.|-    ..++|+ +.=|+.|+.+. .-|+..+..++.+++|+.+=.|.-- 
T Consensus       145 ----------------~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~pV~~D~sHs~q  208 (288)
T 3tml_A          145 ----------------HDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRETNAPVVFDATHSVQ  208 (288)
T ss_dssp             ----------------THHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHHHHHHGGGGSSCEEEEHHHHTC
T ss_pred             ----------------HHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHHHHHHHHhcCCcEEEcCCcccc
Confidence                            112344555555555    223555 56677663221 1245555555447999976222100 


Q ss_pred             ccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230          422 FLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       422 fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      .-|. .|.....+|.....+ +..|+..||+  +|-+|-
T Consensus       209 ~p~~-~~~~s~G~r~~v~~~-a~AAvA~GadGl~iE~H~  245 (288)
T 3tml_A          209 LPGG-QGTSSGGQREFVPVL-ARAAVATGVAGLFMETHP  245 (288)
T ss_dssp             CCC---------CTTHHHHH-HHHHHHHCCSEEEEEEES
T ss_pred             cCCc-ccCCCCCchhhHHHH-HHHHHHcCCCEEEEeecc
Confidence            0000 000001234443332 4457778998  999995

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=95.11  E-value=0.94  Score=46.35  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=106.4

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAV  306 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL  306 (480)
                      +..++.++-++.|+.+.+.|.+.|++|.    |.+   + ..+.+.    ++.+++..  .+.++.. --.+++-+++|+
T Consensus        19 ~~~~~~~~k~~ia~~L~~~Gv~~IE~g~----p~~---~-~~~~~~----~~~i~~~~--~~~~v~~~~r~~~~di~~a~   84 (382)
T 2ztj_A           19 KANFSTQDKVEIAKALDEFGIEYIEVTT----PVA---S-PQSRKD----AEVLASLG--LKAKVVTHIQCRLDAAKVAV   84 (382)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTCSEEEECC----TTS---C-HHHHHH----HHHHHTSC--CSSEEEEEEESCHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCcCEEEEcC----CcC---C-HHHHHH----HHHHHhcC--CCcEEEEEcccChhhHHHHH
Confidence            3457899999999999999999999996    332   1 233433    34445431  1334433 334577799999


Q ss_pred             HcCCCEEecCCCCCC--------C--------chHHHHHHhcC--CCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          307 GKGAHIVNDVSAGQL--------D--------PDMYKVVAGLK--VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       307 ~~G~~iINdVsg~~~--------d--------~~m~~l~~~~~--~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      +.|++.|+=..+...        +        .+.++.++++|  ..+.+....+ +.     .+          .+++.
T Consensus        85 ~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~-~~-----~~----------~~~~~  148 (382)
T 2ztj_A           85 ETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDT-FR-----SE----------EQDLL  148 (382)
T ss_dssp             HTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTT-TT-----SC----------HHHHH
T ss_pred             HcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeC-CC-----CC----------HHHHH
Confidence            999998773322211        1        24677788889  7777655532 11     11          15666


Q ss_pred             HHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-cc--CCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AA--SHAPILIGPSRKRFLGEICNRPSADERDPATIASIT  444 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~--~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~  444 (480)
                      +.++.+.++ ..  .|.| |- .|... +.+..++++.+ +.  ++.|+  |+       ..  -   .++ +...|-+.
T Consensus       149 ~~~~~~~~~-a~--~i~l~DT-~G~~~-P~~~~~lv~~l~~~~~~~~~i--~~-------H~--H---nd~-GlAvAN~l  208 (382)
T 2ztj_A          149 AVYEAVAPY-VD--RVGLADT-VGVAT-PRQVYALVREVRRVVGPRVDI--EF-------HG--H---NDT-GCAIANAY  208 (382)
T ss_dssp             HHHHHHGGG-CS--EEEEEET-TSCCC-HHHHHHHHHHHHHHHTTTSEE--EE-------EE--B---CTT-SCHHHHHH
T ss_pred             HHHHHHHHh-cC--EEEecCC-CCCCC-HHHHHHHHHHHHHhcCCCCeE--EE-------Ee--C---CCc-cHHHHHHH
Confidence            777777777 43  4544 54 44433 44455666666 23  45554  32       11  0   122 22334456


Q ss_pred             HHHHcCCcEEEcC
Q 038230          445 AGVLGGANIVRVH  457 (480)
Q Consensus       445 ~a~~~Ga~IlRvH  457 (480)
                      .|++.||+.+.+.
T Consensus       209 aAv~aGa~~vd~t  221 (382)
T 2ztj_A          209 EAIEAGATHVDTT  221 (382)
T ss_dssp             HHHHTTCCEEEEB
T ss_pred             HHHHhCCCEEEEc
Confidence            7888999998854

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=94.94  E-value=0.14  Score=50.40  Aligned_cols=181  Identities=15%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             ccccCccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHH
Q 038230          189 IGKEGMKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAE  268 (480)
Q Consensus       189 ~q~~~i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~  268 (480)
                      .|...++. +.+++..++- .+|+|.-  -+|.         .+.+++++.+++..+.|||+|.+=..--.    ..+. 
T Consensus        20 ~~~~~m~~-v~v~~~~~g~-g~p~i~v--~l~~---------~~~~e~~~~~~~~~~~gaD~VElRvD~l~----~~~~-   81 (276)
T 3o1n_A           20 FQSNAMKT-VTVRDLVVGE-GAPKIIV--SLMG---------KTITDVKSEALAYREADFDILEWRVDHFA----NVTT-   81 (276)
T ss_dssp             -----CCC-EEETTEEETS-SSCEEEE--EECC---------SSHHHHHHHHHHHTTSCCSEEEEEGGGCT----TTTC-
T ss_pred             eccCCceE-EEECCEEeCC-CCcEEEE--EeCC---------CCHHHHHHHHHHHhhCCCCEEEEEecccc----ccCc-
Confidence            33344433 5577777755 4677744  4453         57899999999988899999999754221    1111 


Q ss_pred             HHHHHHHHHHHHHHcCCcCCCCe--EEEeC------------CCHHHHHHHHHcC-CCEEecCCCCCCC---chHHHHHH
Q 038230          269 KELERLIPVLEAVLTMPEMEGKL--VSVDT------------FYSKVASEAVGKG-AHIVNDVSAGQLD---PDMYKVVA  330 (480)
Q Consensus       269 eE~~rl~~vi~~l~~~~~~~~~p--ISIDT------------~~~~v~~aaL~~G-~~iINdVsg~~~d---~~m~~l~~  330 (480)
                        .+.+...+..|++..  .++|  +.+-|            .+-+.++.|++.| +++| ||--...+   .++.+.++
T Consensus        82 --~~~v~~~l~~lr~~~--~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyI-DvEl~~~~~~~~~l~~~a~  156 (276)
T 3o1n_A           82 --AESVLEAAGAIREII--TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMI-DLELFTGDDEVKATVGYAH  156 (276)
T ss_dssp             --HHHHHHHHHHHHHHC--CSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEE-EEEGGGCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhc--CCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEE-EEECcCCHHHHHHHHHHHH
Confidence              233444555555432  1344  33333            3456888888889 8888 57543212   23444557


Q ss_pred             hcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc--
Q 038230          331 GLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL--  406 (480)
Q Consensus       331 ~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l--  406 (480)
                      +.++.+|+. |+ .++|.                 .+.+.++++++.+.|-+-=+|..     .+++.++++.+++-.  
T Consensus       157 ~~~~kvI~S~Hdf~~tP~-----------------~~el~~~~~~~~~~GaDIvKia~-----~a~s~~Dvl~Ll~~~~~  214 (276)
T 3o1n_A          157 QHNVAVIMSNHDFHKTPA-----------------AEEIVQRLRKMQELGADIPKIAV-----MPQTKADVLTLLTATVE  214 (276)
T ss_dssp             HTTCEEEEEEEESSCCCC-----------------HHHHHHHHHHHHHTTCSEEEEEE-----CCSSHHHHHHHHHHHHH
T ss_pred             hCCCEEEEEeecCCCCcC-----------------HHHHHHHHHHHHHcCCCEEEEEe-----cCCChHHHHHHHHHHHH
Confidence            889999986 54 44552                 14456778888898864224544     458888888887643  


Q ss_pred             -c--cCCCcEE
Q 038230          407 -A--ASHAPIL  414 (480)
Q Consensus       407 -~--~~g~Pil  414 (480)
                       +  ..+.|++
T Consensus       215 ~~~~~~~~PlI  225 (276)
T 3o1n_A          215 MQERYADRPII  225 (276)
T ss_dssp             HHHHTCCSCCE
T ss_pred             HHhcCCCCCEE
Confidence             2  2577854

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=94.76  E-value=3.5  Score=40.57  Aligned_cols=195  Identities=13%  Similarity=0.130  Sum_probs=111.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCE----EEeC-C---CCCCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230          231 QSVEAAVSQVRLMISEGADM----IDIG-A---QSTRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV  301 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdi----IDIG-~---eStrP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v  301 (480)
                      -+.+.+++.|+++.+.|+.+    +=-+ .   .-|.|+ ......++-++.+.    .+.+.   .++|+.-+-++++.
T Consensus        31 e~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~----~~~~e---~Glp~~Tev~d~~~  103 (285)
T 3sz8_A           31 ESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFA----EVKAR---FGVPVITDVHEAEQ  103 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHH----HHHHH---HCCCEEEECCSGGG
T ss_pred             CCHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHH----HHHHh---cCCeEEEEeCCHHH
Confidence            46889999999999876443    2221 1   134443 22333345555443    33333   38999999999999


Q ss_pred             HHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          302 ASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                      ++...+. ++++- |.+++ ..-+++.-+++.+.||++-.  |+--+++                .+...++++.+.|-+
T Consensus       104 v~~l~~~-vd~lq-IgA~~~~n~~LLr~va~~gkPVilK~--G~~~t~~----------------ei~~ave~i~~~Gn~  163 (285)
T 3sz8_A          104 AAPVAEI-ADVLQ-VPAFLARQTDLVVAIAKAGKPVNVKK--PQFMSPT----------------QLKHVVSKCGEVGND  163 (285)
T ss_dssp             HHHHHTT-CSEEE-ECGGGTTCHHHHHHHHHTSSCEEEEC--CTTSCGG----------------GTHHHHHHHHHTTCC
T ss_pred             HHHHHHh-CCEEE-ECccccCCHHHHHHHHccCCcEEEeC--CCCCCHH----------------HHHHHHHHHHHcCCC
Confidence            9999888 88875 54432 23568888889999999843  3222221                124566777888976


Q ss_pred             CCCEEE-ecCCCCccCh----hHHHHHHHhcccC-CCcEEEeecccc-ccccccCCCCcCcccHHHHHHHHHHHHcCCc-
Q 038230          381 AWRIII-DPGLGFSKKA----EHNLDILLGLAAS-HAPILIGPSRKR-FLGEICNRPSADERDPATIASITAGVLGGAN-  452 (480)
Q Consensus       381 ~~~Iil-DPgiGf~k~~----~~~~~~lr~l~~~-g~Pil~G~SrKs-fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~-  452 (480)
                        +|+| .=|+-|+.+.    -.++..+|+  .+ ++|+.+=.|.-- .-|. .|.....+|..... ++..|+..||+ 
T Consensus       164 --~i~L~erg~~y~~~~~~vdl~~i~~lk~--~~~~~pV~~D~sHs~q~p~~-~~~~s~G~r~~v~~-~a~AAvA~GA~g  237 (285)
T 3sz8_A          164 --RVMLCERGSSFGYDNLVVDMLGFRQMAE--TTGGCPVIFDVTHSLQCRDP-LGDASGGRRRQVLD-LARAGIAVGIAG  237 (285)
T ss_dssp             --CEEEEECCEECSSSCEECCTTHHHHHHH--HTTSCCEEEETTTTCC----------------HHH-HHHHHHHHCCSE
T ss_pred             --cEEEEeCCCCCCCCcCccCHHHHHHHHH--hCCCCCEEEeCCCccccCCC-cCCCCCCchhhHHH-HHHHHHHhCCCE
Confidence              6665 7777664322    233444554  34 799976222110 0000 00000123433332 24457778999 


Q ss_pred             -EEEcCC
Q 038230          453 -IVRVHN  458 (480)
Q Consensus       453 -IlRvHd  458 (480)
                       +|-+|-
T Consensus       238 l~IE~H~  244 (285)
T 3sz8_A          238 LFLEAHP  244 (285)
T ss_dssp             EEEEEES
T ss_pred             EEEEecc
Confidence             999995

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=94.75  E-value=0.22  Score=48.03  Aligned_cols=81  Identities=16%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecC
Q 038230          239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDV  316 (480)
Q Consensus       239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdV  316 (480)
                      .++.+.++|||+|.+|+ |     ..++    .+.+...++++++.    ++||-+=+|..+.+    ..|+|  |+.|+
T Consensus        25 ~~~~l~~~GaD~ielG~-S-----~Gvt----~~~~~~~v~~ir~~----~~Pivlm~y~~n~i----~~G~dg~iiPdL   86 (240)
T 1viz_A           25 QLEILCESGTDAVIIGG-S-----DGVT----EDNVLRMMSKVRRF----LVPCVLEVSAIEAI----VPGFDLYFIPSV   86 (240)
T ss_dssp             HHHHHHTSCCSEEEECC----------C----HHHHHHHHHHHTTS----SSCEEEECSCGGGC----CSCCSEEEEEEE
T ss_pred             HHHHHHHcCCCEEEECC-C-----CCCC----HHHHHHHHHHhhCc----CCCEEEecCccccc----cCCCCEEEEccc
Confidence            36788999999999998 2     2233    45566778888762    89999999985333    56866  88888


Q ss_pred             CCCCCCchH-----HHHHHhcC-----CCEEE
Q 038230          317 SAGQLDPDM-----YKVVAGLK-----VPYVA  338 (480)
Q Consensus       317 sg~~~d~~m-----~~l~~~~~-----~~vVl  338 (480)
                      -..+ +++.     ...+++||     ...|.
T Consensus        87 p~ee-~~~~~~g~~~~a~~~~g~~~~~l~~i~  117 (240)
T 1viz_A           87 LNSK-NADWIVGMHQKAMKEYGELMSMEEIVA  117 (240)
T ss_dssp             TTBS-SGGGTTHHHHHHHHHCHHHHHHSCEEE
T ss_pred             Cccc-ChhhhcchhHHHHHHcCCCCcceeeee
Confidence            7654 5666     58889999     66664

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.64  E-value=1.3  Score=44.87  Aligned_cols=199  Identities=16%  Similarity=0.086  Sum_probs=119.5

Q ss_pred             CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCC-----EEEeCC--------CCC--CCCCCCCCHHH----H
Q 038230          210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGAD-----MIDIGA--------QST--RPMATKISAEK----E  270 (480)
Q Consensus       210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAd-----iIDIG~--------eSt--rP~a~~v~~~e----E  270 (480)
                      +|.|.+.+-+.-        ..|.+-|.+......++|||     .+=+=.        .+.  +...+....-+    .
T Consensus         5 ~~~IIAEig~NH--------nGdle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~   76 (350)
T 3g8r_A            5 KPLFIFEMANNH--------MGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQ   76 (350)
T ss_dssp             CCEEEEECTTTT--------TTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCC
T ss_pred             CCEEEEEECCCc--------cCcHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCC
Confidence            577777665553        34678888888888889998     543310        000  00011100000    1


Q ss_pred             HHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccc
Q 038230          271 LERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQN  350 (480)
Q Consensus       271 ~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~  350 (480)
                      ++.+..+.+.-++.    ++++.-.-++.+.++...+.|++++-=-|+.-.+-.+++.++++|-||++-  +|.. |+  
T Consensus        77 ~e~~~~L~~~~~~~----Gi~~~st~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLs--tGms-tl--  147 (350)
T 3g8r_A           77 PEQMQKLVAEMKAN----GFKAICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVAS--TAGA-RR--  147 (350)
T ss_dssp             HHHHHHHHHHHHHT----TCEEEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEE--CTTC-CH--
T ss_pred             HHHHHHHHHHHHHc----CCcEEeccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEE--CCCC-CH--
Confidence            22333334444544    899999999999999999999999984444433567899999999999984  3543 33  


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-cCCCCccCh-hHHHHHHHhcc-cC-CCcEEEeeccccccccc
Q 038230          351 EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-PGLGFSKKA-EHNLDILLGLA-AS-HAPILIGPSRKRFLGEI  426 (480)
Q Consensus       351 ~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-PgiGf~k~~-~~~~~~lr~l~-~~-g~Pil~G~SrKsfi~~v  426 (480)
                                    +++...++.+.+.|-   +|+|= ---+|.... .-|+..+..++ .+ ++|+  |.|     +.-
T Consensus       148 --------------~Ei~~Ave~i~~~g~---~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpV--G~S-----dHt  203 (350)
T 3g8r_A          148 --------------EDIDKVVSFMLHRGK---DLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRI--GYS-----THE  203 (350)
T ss_dssp             --------------HHHHHHHHHHHTTTC---CEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEE--EEE-----ECC
T ss_pred             --------------HHHHHHHHHHHHcCC---CEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCE--EcC-----CCC
Confidence                          334566667777774   46662 223443222 33455555552 35 7885  776     222


Q ss_pred             cCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          427 CNRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       427 ~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      +|.     +.    +.+..|+..||.||-+|-
T Consensus       204 ~g~-----~~----~~~~AAvAlGA~vIEkH~  226 (350)
T 3g8r_A          204 DPD-----LM----EPIMLAVAQGATVFEKHV  226 (350)
T ss_dssp             CSS-----CC----HHHHHHHHTTCCEEEEEB
T ss_pred             CCC-----cc----HHHHHHHHcCCCEEEEec
Confidence            121     11    223357789999999996

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=94.50  E-value=0.42  Score=45.88  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecCCC
Q 038230          241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDVSA  318 (480)
Q Consensus       241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdVsg  318 (480)
                      +++.+.|+|.|-||+.      ..++    .+.+..+++.+++.    ++|+-+=+++++.+    ..|+|  ++.|+-.
T Consensus        30 ~~~~~~GtDaI~vGgs------~gvt----~~~~~~~v~~ik~~----~~Piil~p~~~~~~----~~gaD~il~pslln   91 (235)
T 3w01_A           30 DAICMSQTDAIMIGGT------DDVT----EDNVIHLMSKIRRY----PLPLVLEISNIESV----MPGFDFYFVPTVLN   91 (235)
T ss_dssp             HHHHTSSCSEEEECCS------SCCC----HHHHHHHHHHHTTS----CSCEEEECCCSTTC----CTTCSEEEEEEETT
T ss_pred             HHHHHcCCCEEEECCc------CCcC----HHHHHHHHHHhcCc----CCCEEEecCCHHHh----hcCCCEEEEccccC
Confidence            3468999999999982      2232    34555667788873    89999999998444    44777  6677765


Q ss_pred             CCCCchH-----HHHHHhcCC-----CEEE
Q 038230          319 GQLDPDM-----YKVVAGLKV-----PYVA  338 (480)
Q Consensus       319 ~~~d~~m-----~~l~~~~~~-----~vVl  338 (480)
                      .+ ++..     .+.++++|.     .+|.
T Consensus        92 ~~-~~~~i~g~~~~a~~~~gl~~~~~e~i~  120 (235)
T 3w01_A           92 ST-DVAFHNGTLLEALKTYGHSIDFEEVIF  120 (235)
T ss_dssp             BS-SGGGTTHHHHHHHHHHGGGCCGGGEEE
T ss_pred             CC-CcchhhhHHHHHHHHcCCCCcccceee
Confidence            44 5555     457899997     6665

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=94.48  E-value=1.3  Score=42.18  Aligned_cols=139  Identities=13%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-Ee----------
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VD----------  295 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-ID----------  295 (480)
                      |+...+.+...+.|+.+.+.||..|-+|.            .++       |+.+++.   +++||- +.          
T Consensus        29 ~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~------------~~~-------i~~ir~~---v~~Pvig~~k~d~~~~~~~   86 (232)
T 3igs_A           29 GSPLDKPEIVAAMALAAEQAGAVAVRIEG------------IDN-------LRMTRSL---VSVPIIGIIKRDLDESPVR   86 (232)
T ss_dssp             TCTTCSHHHHHHHHHHHHHTTCSEEEEES------------HHH-------HHHHHTT---CCSCEEEECBCCCSSCCCC
T ss_pred             CCCCCCcchHHHHHHHHHHCCCeEEEECC------------HHH-------HHHHHHh---cCCCEEEEEeecCCCcceE
Confidence            33355678899999999999999998862            122       4555665   477852 11          


Q ss_pred             -CCCHHHHHHHHHcCCCEEecCCCCCCC----chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          296 -TFYSKVASEAVGKGAHIVNDVSAGQLD----PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       296 -T~~~~v~~aaL~~G~~iINdVsg~~~d----~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                       +.+.+.+++++++|+|+|--......+    .++++.+++++..+++-..     +                    .+.
T Consensus        87 I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~-----t--------------------~ee  141 (232)
T 3igs_A           87 ITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS-----S--------------------VDD  141 (232)
T ss_dssp             BSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC-----S--------------------HHH
T ss_pred             eCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC-----C--------------------HHH
Confidence             134567889999999987533332112    4678888888766654211     1                    133


Q ss_pred             HHHHHHCCCCCCCEEEecCCCC---ccChhHHHHHHHhcccCCCcEEE
Q 038230          371 VRDAELSGIPAWRIIIDPGLGF---SKKAEHNLDILLGLAASHAPILI  415 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf---~k~~~~~~~~lr~l~~~g~Pil~  415 (480)
                      ..++.+.|.+   +|.=-..|+   .+...-+++++++++..++|++.
T Consensus       142 a~~a~~~Gad---~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA  186 (232)
T 3igs_A          142 GLACQRLGAD---IIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIA  186 (232)
T ss_dssp             HHHHHHTTCS---EEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhCCCC---EEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEE
Confidence            4567789985   552111233   12223357788887323889875

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=94.36  E-value=1.1  Score=42.45  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=84.9

Q ss_pred             CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-E---e-------
Q 038230          227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-V---D-------  295 (480)
Q Consensus       227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-I---D-------  295 (480)
                      |+...+.+...+.|+.+.+.||.-|-+|.            .++       |+.+++.   +++||- +   |       
T Consensus        29 ~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~------------~~~-------i~~ir~~---v~~Pvig~~k~~~~~~~~~   86 (229)
T 3q58_A           29 GSPMDKPEIVAAMAQAAASAGAVAVRIEG------------IEN-------LRTVRPH---LSVPIIGIIKRDLTGSPVR   86 (229)
T ss_dssp             TSTTCSHHHHHHHHHHHHHTTCSEEEEES------------HHH-------HHHHGGG---CCSCEEEECBCCCSSCCCC
T ss_pred             CCCCCCcchHHHHHHHHHHCCCcEEEECC------------HHH-------HHHHHHh---cCCCEEEEEeecCCCCceE
Confidence            34455778899999999999999999862            122       4555665   477742 2   2       


Q ss_pred             -CCCHHHHHHHHHcCCCEEecCCCCCCC----chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230          296 -TFYSKVASEAVGKGAHIVNDVSAGQLD----PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK  370 (480)
Q Consensus       296 -T~~~~v~~aaL~~G~~iINdVsg~~~d----~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~  370 (480)
                       |.+.+.+++++++|+|+|--......+    .++++.++++|..++.-..     +                    .+.
T Consensus        87 I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~-----t--------------------~ee  141 (229)
T 3q58_A           87 ITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS-----T--------------------VNE  141 (229)
T ss_dssp             BSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS-----S--------------------HHH
T ss_pred             eCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC-----C--------------------HHH
Confidence             134567889999999987533322112    4678888888766654211     1                    123


Q ss_pred             HHHHHHCCCCCCCEEEecCCCCc---cChhHHHHHHHhcccCCCcEEE
Q 038230          371 VRDAELSGIPAWRIIIDPGLGFS---KKAEHNLDILLGLAASHAPILI  415 (480)
Q Consensus       371 i~~a~~~Gi~~~~IilDPgiGf~---k~~~~~~~~lr~l~~~g~Pil~  415 (480)
                      ..++.+.|.+   +|.=-..|+.   +...-+++++++++..++|++.
T Consensus       142 a~~a~~~Gad---~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA  186 (229)
T 3q58_A          142 GISCHQKGIE---FIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIA  186 (229)
T ss_dssp             HHHHHHTTCS---EEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEE
T ss_pred             HHHHHhCCCC---EEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEE
Confidence            4567789995   5521112331   2223357788887323889875

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=94.26  E-value=1.2  Score=42.48  Aligned_cols=165  Identities=15%  Similarity=0.234  Sum_probs=95.2

Q ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecCCC
Q 038230          241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDVSA  318 (480)
Q Consensus       241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdVsg  318 (480)
                      ++..+.|+|.|-||| |     ..++    .+.+..+++.+++.    ++|+-+=+++++.+    -.|+|  ++.|+-.
T Consensus        25 ~~~~~~GtD~i~vGG-s-----~gvt----~~~~~~~v~~ik~~----~~Pvvlfp~~~~~v----~~gaD~~l~pslln   86 (228)
T 3vzx_A           25 EILCESGTDAVIIGG-S-----DGVT----EDNVLRMMSKVRRF----LVPCVLEVSAIEAI----VPGFDLYFIPSVLN   86 (228)
T ss_dssp             HHHHTSSCSEEEECC-C-----SCCC----HHHHHHHHHHHTTS----SSCEEEECSCGGGC----CSCCSEEEEEEETT
T ss_pred             HHHHHcCCCEEEECC-c-----CCCC----HHHHHHHHHHhhcc----CCCEEEeCCCHHHc----cccCCEEEEeeecC
Confidence            345799999999998 2     2233    24555667777763    89999999998544    35777  6666654


Q ss_pred             CCCCchHH-----HHHHhcCC-----CEEE-----EcCCCCCCcc-ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230          319 GQLDPDMY-----KVVAGLKV-----PYVA-----MHMRGDPSTM-QNEENLQYDDVCKQVASELYSKVRDAELSGIPAW  382 (480)
Q Consensus       319 ~~~d~~m~-----~l~~~~~~-----~vVl-----mh~~g~p~~~-~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~  382 (480)
                      ++ ++..+     +.++++|.     .+|.     +...+..... ..++.+.    .    +.+......++-.|+.  
T Consensus        87 ~~-~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~----~----e~~~~~a~~a~~~g~~--  155 (228)
T 3vzx_A           87 SK-NADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLN----M----DDIVAYARVSELLQLP--  155 (228)
T ss_dssp             BS-SGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCC----H----HHHHHHHHHHHHTTCS--
T ss_pred             CC-CcchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCC----H----HHHHHHHHHHHHcCCC--
Confidence            44 56665     77899985     5544     3321110000 0001111    1    1122333344556665  


Q ss_pred             CEEEecCCCCccChhHHHHHHHhc-ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230          383 RIIIDPGLGFSKKAEHNLDILLGL-AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN  458 (480)
Q Consensus       383 ~IilDPgiGf~k~~~~~~~~lr~l-~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd  458 (480)
                      =+++|= .|-..    +.++++++ +.. +.|+.+|-          |-     |....+.   .+. .||+-+-|=.
T Consensus       156 ~VYld~-sG~~~----~~~~i~~i~~~~~~~Pv~vGG----------GI-----~t~e~a~---~~~-~gAD~VVVGS  209 (228)
T 3vzx_A          156 IFYLEY-SGVLG----DIEAVKKTKAVLETSTLFYGG----------GI-----KDAETAK---QYA-EHADVIVVGN  209 (228)
T ss_dssp             EEEEEC-TTSCC----CHHHHHHHHHHCSSSEEEEES----------SC-----CSHHHHH---HHH-TTCSEEEECT
T ss_pred             EEEecC-CCCcC----CHHHHHHHHHhcCCCCEEEeC----------CC-----CCHHHHH---HHH-hCCCEEEECh
Confidence            356664 44321    57778877 346 79999984          32     2233332   122 6999888876

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=94.13  E-value=0.63  Score=47.54  Aligned_cols=180  Identities=15%  Similarity=0.144  Sum_probs=106.2

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAV  306 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL  306 (480)
                      |..++.++-++.|+.+.+.|.+.|++|.    |.+    .+.+++++..+.+.+      .+..++.=+ .+.+-++.|+
T Consensus        28 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~----p~~----~~~d~e~v~~i~~~~------~~~~i~~l~r~~~~di~~a~   93 (370)
T 3rmj_A           28 GAAMTKEEKIRVARQLEKLGVDIIEAGF----AAA----SPGDFEAVNAIAKTI------TKSTVCSLSRAIERDIRQAG   93 (370)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTCSEEEEEE----GGG----CHHHHHHHHHHHTTC------SSSEEEEEEESSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHHHHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHH
Confidence            4458899999999999999999999995    322    246777765544322      244554333 4788888888


Q ss_pred             H----cCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230          307 G----KGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS  365 (480)
Q Consensus       307 ~----~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~  365 (480)
                      +    +|++.|+=..+..         ..        .++++.+++++..+......+.      +.+          .+
T Consensus        94 ~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~------r~~----------~~  157 (370)
T 3rmj_A           94 EAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDAL------RSE----------ID  157 (370)
T ss_dssp             HHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGG------GSC----------HH
T ss_pred             HHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCC------ccC----------HH
Confidence            8    6877665322211         01        1256677888887765433211      111          15


Q ss_pred             HHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCC---CcEEEeeccccccccccCCCCcCcccHHH
Q 038230          366 ELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASH---APILIGPSRKRFLGEICNRPSADERDPAT  439 (480)
Q Consensus       366 ~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g---~Pil~G~SrKsfi~~v~g~~~~~~r~~~t  439 (480)
                      ++.+.++.+.++|..  .|.| |- +|... +.+..++++.++  .++   .|+  |+       +.  -   .++. ..
T Consensus       158 ~~~~~~~~~~~~Ga~--~i~l~DT-~G~~~-P~~~~~lv~~l~~~~~~~~~~~l--~~-------H~--H---nd~G-lA  218 (370)
T 3rmj_A          158 FLAEICGAVIEAGAT--TINIPDT-VGYSI-PYKTEEFFRELIAKTPNGGKVVW--SA-------HC--H---NDLG-LA  218 (370)
T ss_dssp             HHHHHHHHHHHHTCC--EEEEECS-SSCCC-HHHHHHHHHHHHHHSTTGGGSEE--EE-------EC--B---CTTS-CH
T ss_pred             HHHHHHHHHHHcCCC--EEEecCc-cCCcC-HHHHHHHHHHHHHhCCCcCceEE--EE-------Ee--C---CCCC-hH
Confidence            677888888999986  4443 43 44333 344455666652  233   444  32       10  0   1222 23


Q ss_pred             HHHHHHHHHcCCcEEEc
Q 038230          440 IASITAGVLGGANIVRV  456 (480)
Q Consensus       440 ~a~~~~a~~~Ga~IlRv  456 (480)
                      .|-+..|++.||+.+.+
T Consensus       219 vAN~laAv~aGa~~vd~  235 (370)
T 3rmj_A          219 VANSLAALKGGARQVEC  235 (370)
T ss_dssp             HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhCCCEEEE
Confidence            33456677888888765

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=93.90  E-value=0.25  Score=47.40  Aligned_cols=143  Identities=18%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..|+.|+-..           +++++++.|+.+++.|++.|.|-..+  |+     ..       ..|+.+++..  .++
T Consensus        34 ~~vv~Vir~~-----------~~~~a~~~a~al~~gGi~~iEvt~~t--~~-----a~-------e~I~~l~~~~--~~~   86 (232)
T 4e38_A           34 LKVIPVIAID-----------NAEDIIPLGKVLAENGLPAAEITFRS--DA-----AV-------EAIRLLRQAQ--PEM   86 (232)
T ss_dssp             HCEEEEECCS-----------SGGGHHHHHHHHHHTTCCEEEEETTS--TT-----HH-------HHHHHHHHHC--TTC
T ss_pred             CCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--CC-----HH-------HHHHHHHHhC--CCC
Confidence            3577776544           46789999999999999999996432  32     11       2234444432  245


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      .+...| ..++.++.|+++|+++|  ++.. .++++++.++++|.+++.=.+  +|                       +
T Consensus        87 ~iGaGTVlt~~~a~~Ai~AGA~fI--vsP~-~~~~vi~~~~~~gi~~ipGv~--Tp-----------------------t  138 (232)
T 4e38_A           87 LIGAGTILNGEQALAAKEAGATFV--VSPG-FNPNTVRACQEIGIDIVPGVN--NP-----------------------S  138 (232)
T ss_dssp             EEEEECCCSHHHHHHHHHHTCSEE--ECSS-CCHHHHHHHHHHTCEEECEEC--SH-----------------------H
T ss_pred             EEeECCcCCHHHHHHHHHcCCCEE--EeCC-CCHHHHHHHHHcCCCEEcCCC--CH-----------------------H
Confidence            555444 46999999999999999  5554 379999999999988874111  11                       2


Q ss_pred             HHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc--cCCCcEEE
Q 038230          370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA--ASHAPILI  415 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~  415 (480)
                      .+.+|.++|.+  -|=+=|     ....-..+.|+.++  .+++|++.
T Consensus       139 Ei~~A~~~Gad--~vK~FP-----a~~~gG~~~lkal~~p~p~ip~~p  179 (232)
T 4e38_A          139 TVEAALEMGLT--TLKFFP-----AEASGGISMVKSLVGPYGDIRLMP  179 (232)
T ss_dssp             HHHHHHHTTCC--EEEECS-----TTTTTHHHHHHHHHTTCTTCEEEE
T ss_pred             HHHHHHHcCCC--EEEECc-----CccccCHHHHHHHHHHhcCCCeee
Confidence            34456789986  333322     22212456677763  45778764

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=93.83  E-value=0.59  Score=46.50  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQST------RPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKV  301 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eSt------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v  301 (480)
                      |.+++.+.+.++++++.||.-+=|=.+..      .++...++.+|-.+|+.-+.++-.+..  .++.|  =.|++-..-
T Consensus        91 yg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~--~d~~I~ARTDa~~~~g  168 (302)
T 3fa4_A           91 YGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIG--SDIVVIARTDSLQTHG  168 (302)
T ss_dssp             TSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHT--CCCEEEEEECCHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC--CCEEEEEEecccccCC
Confidence            34677888999999999999998876532      134567888888888887776654320  23333  347764333


Q ss_pred             HHHHH-------HcCCCEEecCCCCCCCchHHHHHHhc-CCCEEEEcC-CC-CCCccccccccchhhHHHHHHHHHHHHH
Q 038230          302 ASEAV-------GKGAHIVNDVSAGQLDPDMYKVVAGL-KVPYVAMHM-RG-DPSTMQNEENLQYDDVCKQVASELYSKV  371 (480)
Q Consensus       302 ~~aaL-------~~G~~iINdVsg~~~d~~m~~l~~~~-~~~vVlmh~-~g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i  371 (480)
                      +++|+       ++|||+|- +.|....+++..+++.. +.|+++.-. .| .|.-                      ..
T Consensus       169 ldeAi~Ra~ay~eAGAD~if-i~g~~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~----------------------~~  225 (302)
T 3fa4_A          169 YEESVARLRAARDAGADVGF-LEGITSREMARQVIQDLAGWPLLLNMVEHGATPSI----------------------SA  225 (302)
T ss_dssp             HHHHHHHHHHHHTTTCSEEE-ETTCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCC----------------------CH
T ss_pred             HHHHHHHHHHHHHcCCCEEe-ecCCCCHHHHHHHHHHhcCCceeEEEecCCCCCCC----------------------CH
Confidence            44443       35999997 66655336788888887 488876432 22 2210                      12


Q ss_pred             HHHHHCCCCCCCEEEecCCCCc
Q 038230          372 RDAELSGIPAWRIIIDPGLGFS  393 (480)
Q Consensus       372 ~~a~~~Gi~~~~IilDPgiGf~  393 (480)
                      +.+.+.|+   ++++=|...+.
T Consensus       226 ~eL~~lGv---~~v~~~~~~~r  244 (302)
T 3fa4_A          226 AEAKEMGF---RIIIFPFAALG  244 (302)
T ss_dssp             HHHHHHTC---SEEEETTTTHH
T ss_pred             HHHHHcCC---CEEEEchHHHH
Confidence            34467899   58998987663

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=93.81  E-value=0.64  Score=43.75  Aligned_cols=98  Identities=17%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..++.|+-..           +.+++++.++.+++.|+++|-+..-+  |.     ..+       .++.+++..  .++
T Consensus        16 ~~~i~v~r~~-----------~~~~~~~~~~al~~gGv~~iel~~k~--~~-----~~~-------~i~~l~~~~--~~~   68 (214)
T 1wbh_A           16 GPVVPVIVVK-----------KLEHAVPMAKALVAGGVRVLNVTLRT--EC-----AVD-------AIRAIAKEV--PEA   68 (214)
T ss_dssp             CSEEEEECCS-----------SGGGHHHHHHHHHHTTCCEEEEESCS--TT-----HHH-------HHHHHHHHC--TTS
T ss_pred             CCEEEEEECC-----------CHHHHHHHHHHHHHcCCCEEEEeCCC--hh-----HHH-------HHHHHHHHC--cCC
Confidence            4467766543           35678999999999999999998422  21     112       334344332  245


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .+.-+| ...+-++.|+++|++.+  +++. .+++..+.++++|.+++.
T Consensus        69 ~vgagtvi~~d~~~~A~~aGAd~v--~~p~-~d~~v~~~~~~~g~~~i~  114 (214)
T 1wbh_A           69 IVGAGTVLNPQQLAEVTEAGAQFA--ISPG-LTEPLLKAATEGTIPLIP  114 (214)
T ss_dssp             EEEEESCCSHHHHHHHHHHTCSCE--EESS-CCHHHHHHHHHSSSCEEE
T ss_pred             EEeeCEEEEHHHHHHHHHcCCCEE--EcCC-CCHHHHHHHHHhCCCEEE
Confidence            555554 45799999999999999  4554 489999999999998885

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=93.80  E-value=0.39  Score=45.76  Aligned_cols=87  Identities=20%  Similarity=0.232  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCCEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEE--
Q 038230          237 VSQVRLMISEGADMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV--  313 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iI--  313 (480)
                      .+++++..+.|||+|-+++.. .+|.           .+..+++.+++.    ++++..|....+.++.|.+.|+++|  
T Consensus        91 ~~~i~~~~~aGad~I~l~~~~~~~p~-----------~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A           91 LQDVDALAQAGADIIAFDASFRSRPV-----------DIDSLLTRIRLH----GLLAMADCSTVNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             HHHHHHHHHHTCSEEEEECCSSCCSS-----------CHHHHHHHHHHT----TCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHHcCCCEEEECccccCChH-----------HHHHHHHHHHHC----CCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence            346677889999999988632 1331           233345556654    7899999999999999999999999  


Q ss_pred             ec--CCCC--C--CCchHHHHHHhcCCCEEE
Q 038230          314 ND--VSAG--Q--LDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       314 Nd--Vsg~--~--~d~~m~~l~~~~~~~vVl  338 (480)
                      |-  .+..  .  -+-++++-+++.++++|.
T Consensus       156 ~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA  186 (229)
T 3q58_A          156 TLSGYTGPITPVEPDLAMVTQLSHAGCRVIA  186 (229)
T ss_dssp             TTTTSSSSCCCSSCCHHHHHHHHTTTCCEEE
T ss_pred             cCccCCCCCcCCCCCHHHHHHHHHcCCCEEE
Confidence            21  1111  1  122445555555777775

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=93.76  E-value=0.76  Score=43.81  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=54.9

Q ss_pred             HHHHHHHHHcCCCE--EEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHH-HHHHHHcCCC
Q 038230          237 VSQVRLMISEGADM--IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKV-ASEAVGKGAH  311 (480)
Q Consensus       237 ~~~A~~~v~~GAdi--IDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v-~~aaL~~G~~  311 (480)
                      -+..+.+ +.|||+  +||==...-|+-..         =.++++.|++.   ++.|+-+|  +.+|+- ++.+.++|++
T Consensus        16 ~~~i~~~-~~gad~lHvDvmDG~fvpn~t~---------G~~~v~~lr~~---~~~~~dvhLmv~dp~~~i~~~~~aGAd   82 (231)
T 3ctl_A           16 KEQIEFI-DSHADYFHIDIMDGHFVPNLTL---------SPFFVSQVKKL---ATKPLDCHLMVTRPQDYIAQLARAGAD   82 (231)
T ss_dssp             HHHHHHH-HTTCSCEEEEEECSSSSSCCCB---------CHHHHHHHHTT---CCSCEEEEEESSCGGGTHHHHHHHTCS
T ss_pred             HHHHHHH-HcCCCEEEEEEEeCccCccchh---------cHHHHHHHHhc---cCCcEEEEEEecCHHHHHHHHHHcCCC
Confidence            3344555 899998  57621111243211         12467777875   34554443  335544 7889999999


Q ss_pred             EEecCCCCC---CCchHHHHHHhcCCCEEEEcCCCCC
Q 038230          312 IVNDVSAGQ---LDPDMYKVVAGLKVPYVAMHMRGDP  345 (480)
Q Consensus       312 iINdVsg~~---~d~~m~~l~~~~~~~vVlmh~~g~p  345 (480)
                      +|- +-++.   .-.+.++.++++|+.+.+.-+.++|
T Consensus        83 ~it-vh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp  118 (231)
T 3ctl_A           83 FIT-LHPETINGQAFRLIDEIRRHDMKVGLILNPETP  118 (231)
T ss_dssp             EEE-ECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred             EEE-ECcccCCccHHHHHHHHHHcCCeEEEEEECCCc
Confidence            985 22221   1257899999999876654333334

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=93.63  E-value=1.7  Score=45.19  Aligned_cols=193  Identities=18%  Similarity=0.183  Sum_probs=111.3

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EE
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VS  293 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-IS  293 (480)
                      |+-.|| |-.---|..++.++-++.|+.+.+.|.++|.+|.    |.+   + +.+++.+.    .+.+..  .... ++
T Consensus        42 I~DtTLRDG~Q~~~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~----P~a---s-p~d~~~~~----~i~~~~--~~~~v~~  107 (423)
T 3ivs_A           42 IIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTS----PVA---S-EQSRQDCE----AICKLG--LKCKILT  107 (423)
T ss_dssp             EEECTTTGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECC----TTS---C-HHHHHHHH----HHHTSC--CSSEEEE
T ss_pred             EEECCCCCCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEee----ccc---C-HHHHHHHH----HHHhcC--CCCEEEE
Confidence            566664 3333334568999999999999999999999995    443   2 24444433    333321  1222 33


Q ss_pred             EeCCCHHHHHHHHHcCCCEEecC---CCC------CCC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccch
Q 038230          294 VDTFYSKVASEAVGKGAHIVNDV---SAG------QLD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY  356 (480)
Q Consensus       294 IDT~~~~v~~aaL~~G~~iINdV---sg~------~~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~  356 (480)
                      .-..+.+-++.|+++|++.|+=+   |-.      ..+        .+.++.++++|..|..-...+.      +.+   
T Consensus       108 ~~r~~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~------r~d---  178 (423)
T 3ivs_A          108 HIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSF------RSD---  178 (423)
T ss_dssp             EEESCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGG------GSC---
T ss_pred             eeccChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCc------CCC---
Confidence            34567888999999998876633   210      111        1356778888888775432211      011   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCc
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADE  434 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~  434 (480)
                             .+++.+.++.+.++|..  .|.| |- +|... +.+..++++.+ +..+.|+  ++       +.     =.+
T Consensus       179 -------~~~~~~v~~~~~~~Ga~--~i~l~DT-vG~~~-P~~v~~lv~~l~~~~~~~i--~~-------H~-----Hnd  233 (423)
T 3ivs_A          179 -------LVDLLSLYKAVDKIGVN--RVGIADT-VGCAT-PRQVYDLIRTLRGVVSCDI--EC-------HF-----HND  233 (423)
T ss_dssp             -------HHHHHHHHHHHHHHCCS--EEEEEET-TSCCC-HHHHHHHHHHHHHHCSSEE--EE-------EE-----BCT
T ss_pred             -------HHHHHHHHHHHHHhCCC--ccccCCc-cCcCC-HHHHHHHHHHHHhhcCCeE--EE-------EE-----CCC
Confidence                   14566777888889986  4433 43 44332 34455666666 3345554  32       11     012


Q ss_pred             ccHHHHHHHHHHHHcCCcEEEcC
Q 038230          435 RDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       435 r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      +. ...|-+..|++.||+.+.+.
T Consensus       234 ~G-lAvAN~laAv~aGa~~vd~t  255 (423)
T 3ivs_A          234 TG-MAIANAYCALEAGATHIDTS  255 (423)
T ss_dssp             TS-CHHHHHHHHHHTTCCEEEEB
T ss_pred             Cc-hHHHHHHHHHHhCCCEEEEe
Confidence            32 23344566888999988653

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=93.58  E-value=0.45  Score=45.35  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCCEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe-
Q 038230          237 VSQVRLMISEGADMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN-  314 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN-  314 (480)
                      .+++++..+.|||+|-+++.. .+|        +   .+..+++.+++.    ++++.+|....+.++.|.+.|+++|- 
T Consensus        91 ~~~i~~~~~~Gad~V~l~~~~~~~p--------~---~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A           91 LDDVDALAQAGAAIIAVDGTARQRP--------V---AVEALLARIHHH----HLLTMADCSSVDDGLACQRLGADIIGT  155 (232)
T ss_dssp             HHHHHHHHHHTCSEEEEECCSSCCS--------S---CHHHHHHHHHHT----TCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHHcCCCEEEECccccCCH--------H---HHHHHHHHHHHC----CCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence            345677889999999988632 133        1   133345555654    78999999999999999999999992 


Q ss_pred             -cC--CCC----CCCchHHHHHHhcCCCEEE
Q 038230          315 -DV--SAG----QLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       315 -dV--sg~----~~d~~m~~l~~~~~~~vVl  338 (480)
                       -.  +..    .-+-++++-+++.++++|.
T Consensus       156 ~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA  186 (232)
T 3igs_A          156 TMSGYTTPDTPEEPDLPLVKALHDAGCRVIA  186 (232)
T ss_dssp             TTTTSSSSSCCSSCCHHHHHHHHHTTCCEEE
T ss_pred             cCccCCCCCCCCCCCHHHHHHHHhcCCcEEE
Confidence             11  111    1122445555555777775

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=93.43  E-value=1.5  Score=42.47  Aligned_cols=173  Identities=14%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      ..+++..++- .+|+|...|  |+         .+.+++++.+++..+.|||++.+=...-.    ..+.   .+.+...
T Consensus         8 ~~v~~~~~g~-~~p~Icv~l--~~---------~~~~e~~~~~~~~~~~~~D~vElRvD~l~----~~~~---~~~v~~~   68 (257)
T 2yr1_A            8 IKVRNIWIGG-TEPCICAPV--VG---------EDDRKVLREAEEVCRKQPDLLEWRADFFR----AIDD---QERVLAT   68 (257)
T ss_dssp             EEETTEEESS-SSCEEEEEE--CC---------SSHHHHHHHHHHHHHSCCSEEEEEGGGCT----TTTC---HHHHHHH
T ss_pred             EEEeeeeeCC-CCcEEEEEe--cC---------CCHHHHHHHHHHHhhcCCCEEEEEeeccc----ccCc---HHHHHHH
Confidence            4455555543 467775544  43         47899999999999999999999764321    1111   3344455


Q ss_pred             HHHHHcCCcCCCCeEEE--eC-------------CCHHHHHHHHHcC-CCEEecCCCCCCC--chHHHHHHhcCCCEEEE
Q 038230          278 LEAVLTMPEMEGKLVSV--DT-------------FYSKVASEAVGKG-AHIVNDVSAGQLD--PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       278 i~~l~~~~~~~~~pISI--DT-------------~~~~v~~aaL~~G-~~iINdVsg~~~d--~~m~~l~~~~~~~vVlm  339 (480)
                      +..|++..  .++|+-+  =|             .+-+.++.|++.| +++|- |--...+  .++.+.+++.++.+|+.
T Consensus        69 l~~lr~~~--~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iD-vEl~~~~~~~~l~~~~~~~~~kvI~S  145 (257)
T 2yr1_A           69 ANGLRNIA--GEIPILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVD-YELAYGERIADVRRMTEECSVWLVVS  145 (257)
T ss_dssp             HHHHHHHS--SSCCEEEECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEE-EEGGGTTHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhc--cCCCEEEEEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEE-EECCCChhHHHHHHHHHhCCCEEEEE
Confidence            55556532  1345432  21             1335788888888 88884 5432211  24566667889999986


Q ss_pred             -cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230          340 -HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI  413 (480)
Q Consensus       340 -h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi  413 (480)
                       |+ .++|.                 .+.+.++++++.+.|-+-=+|..     .+++.++++.+++-.    .....|+
T Consensus       146 ~Hdf~~tP~-----------------~~el~~~~~~~~~~gaDivKia~-----~a~s~~D~l~ll~~~~~~~~~~~~P~  203 (257)
T 2yr1_A          146 RHYFDGTPR-----------------KETLLADMRQAERYGADIAKVAV-----MPKSPEDVLVLLQATEEARRELAIPL  203 (257)
T ss_dssp             EEESSCCCC-----------------HHHHHHHHHHHHHTTCSEEEEEE-----CCSSHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             ecCCCCCcC-----------------HHHHHHHHHHHHhcCCCEEEEEe-----ccCCHHHHHHHHHHHHHHhccCCCCE
Confidence             43 45553                 14456788888999965335554     347788888887643    2356785


Q ss_pred             E
Q 038230          414 L  414 (480)
Q Consensus       414 l  414 (480)
                      +
T Consensus       204 I  204 (257)
T 2yr1_A          204 I  204 (257)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.34  E-value=0.49  Score=45.68  Aligned_cols=99  Identities=13%  Similarity=0.071  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCH-HHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGAD--MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYS-KVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAd--iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~-~v~~aaL~~G  309 (480)
                      ..-+..+.+.+.|||  -+||.=...-|+-.. .+        ++++.|++..  .+.|+-++  ..+| .-++.+.++|
T Consensus        41 ~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~-G~--------~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aG  109 (246)
T 3inp_A           41 RLGDDVKAVLAAGADNIHFDVMDNHYVPNLTF-GP--------MVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAG  109 (246)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCC-CH--------HHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCCEEEEEecCCCcCcchhc-CH--------HHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcC
Confidence            344556666779998  667764333344221 11        4566666541  14554443  2333 3577888899


Q ss_pred             CCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCC
Q 038230          310 AHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDP  345 (480)
Q Consensus       310 ~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p  345 (480)
                      +++|. +-.+..+  .+.++.++++|+.+.+.-+.++|
T Consensus       110 Ad~it-vH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp  146 (246)
T 3inp_A          110 ATSIV-FHPEASEHIDRSLQLIKSFGIQAGLALNPATG  146 (246)
T ss_dssp             CSEEE-ECGGGCSCHHHHHHHHHTTTSEEEEEECTTCC
T ss_pred             CCEEE-EccccchhHHHHHHHHHHcCCeEEEEecCCCC
Confidence            99997 4443212  46888899999877665433344

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=93.13  E-value=1.1  Score=43.84  Aligned_cols=156  Identities=15%  Similarity=0.208  Sum_probs=87.9

Q ss_pred             HHHHHHcCCCEEEeCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-----H-HHH---HHH
Q 038230          240 VRLMISEGADMIDIGAQS-----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-----S-KVA---SEA  305 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~eS-----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-----~-~v~---~aa  305 (480)
                      |+-.-++|.|+|=+|...     ..|...+++-+|-+..    .+.+.+-.  ...||+.|-..     + +++   .+.
T Consensus        42 A~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h----~~aV~r~~--~~~~vvaD~pfgsY~s~~~a~~~a~rl  115 (275)
T 3vav_A           42 AALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYH----TACVARAQ--PRALIVADLPFGTYGTPADAFASAVKL  115 (275)
T ss_dssp             HHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHH----HHHHHHTC--CSSEEEEECCTTSCSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHH----HHHHHhcC--CCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence            344567999999888311     2455557775444443    45555432  24788887543     2 233   344


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      +++|++.|| +-+...-.+.++.+.+.|++++. |...+|++......+.-..-.++..+.+.++...++++|-.   .|
T Consensus       116 ~kaGa~aVk-lEdg~~~~~~i~~l~~~GIpv~g-HlgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~---~i  190 (275)
T 3vav_A          116 MRAGAQMVK-FEGGEWLAETVRFLVERAVPVCA-HVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQ---LI  190 (275)
T ss_dssp             HHTTCSEEE-EECCGGGHHHHHHHHHTTCCEEE-EEESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCS---EE
T ss_pred             HHcCCCEEE-ECCchhHHHHHHHHHHCCCCEEE-ecCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCC---EE
Confidence            567999999 65543224556666778999997 76666765422111100000012234555777777899995   66


Q ss_pred             EecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          386 IDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       386 lDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                      +=+++   .+ .    +++++ +.+.+|++
T Consensus       191 vlE~v---p~-~----~a~~It~~l~iP~i  212 (275)
T 3vav_A          191 VLEAV---PT-L----VAAEVTRELSIPTI  212 (275)
T ss_dssp             EEESC---CH-H----HHHHHHHHCSSCEE
T ss_pred             EecCC---CH-H----HHHHHHHhCCCCEE
Confidence            65665   11 1    34444 34678875

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=92.92  E-value=3.5  Score=45.65  Aligned_cols=184  Identities=15%  Similarity=0.090  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCE--EEeCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-Ee-C----
Q 038230          231 QSVEAAVSQVRLMISEGADM--IDIGAQST------RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VD-T----  296 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdi--IDIG~eSt------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-ID-T----  296 (480)
                      ++.++.++.|+.+.+.|+++  |++||.+|      .++      +.+|+++..+.+.+.      +.++. +. .    
T Consensus       122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~------e~p~e~l~~l~~~~~------~~~l~~l~R~~n~v  189 (718)
T 3bg3_A          122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLY------ECPWRRLQELRELIP------NIPFQMLLRGANAV  189 (718)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSC------CCHHHHHHHHHHHCS------SSCEEEEECGGGTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCC------CCHHHHHHHHHHHcc------cchHHHHhcccccc
Confidence            68899999999999998888  99997666      222      245777766665553      23344 22 1    


Q ss_pred             ----CC----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCC--CCCCccccccccchhhHHH
Q 038230          297 ----FY----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMR--GDPSTMQNEENLQYDDVCK  361 (480)
Q Consensus       297 ----~~----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~--g~p~~~~~~~~~~~~~v~~  361 (480)
                          +-    .+-+++|+++|+++|.=..+.+.-   ....+.+++.|..+.  +++..  +.|..    ..  | +   
T Consensus       190 gy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r----~~--~-~---  259 (718)
T 3bg3_A          190 GYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSR----TK--Y-S---  259 (718)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTC----CT--T-C---
T ss_pred             cccccCCcchHHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCC----CC--C-C---
Confidence                11    355678888999987644444321   335566777775544  45552  23321    00  0 1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-c-CCCcEEEeeccccccccccCCCCcCcccHH
Q 038230          362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-A-SHAPILIGPSRKRFLGEICNRPSADERDPA  438 (480)
Q Consensus       362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~-~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~  438 (480)
                        .+++.+.++.+.++|..  .|.| |- .|... +.+..++++.++ . ++.|+=+ |.              .+-.+.
T Consensus       260 --~e~~~~~a~~l~~~Ga~--~I~l~DT-~G~~~-P~~v~~lV~~lk~~~p~~~I~~-H~--------------Hnd~Gl  318 (718)
T 3bg3_A          260 --LQYYMGLAEELVRAGTH--ILCIKDM-AGLLK-PTACTMLVSSLRDRFPDLPLHI-HT--------------HDTSGA  318 (718)
T ss_dssp             --HHHHHHHHHHHHHHTCS--EEEEECT-TSCCC-HHHHHHHHHHHHHHSTTCCEEE-EC--------------CCTTSC
T ss_pred             --HHHHHHHHHHHHHcCCC--EEEEcCc-CCCcC-HHHHHHHHHHHHHhCCCCeEEE-EE--------------CCCccH
Confidence              15677888888899985  4433 43 34433 344456666662 3 3566532 11              111223


Q ss_pred             HHHHHHHHHHcCCcEEEcC
Q 038230          439 TIASITAGVLGGANIVRVH  457 (480)
Q Consensus       439 t~a~~~~a~~~Ga~IlRvH  457 (480)
                      ..|-+..|++.||+++.+.
T Consensus       319 AvANslaAveAGa~~VD~t  337 (718)
T 3bg3_A          319 GVAAMLACAQAGADVVDVA  337 (718)
T ss_dssp             HHHHHHHHHHTTCSEEEEB
T ss_pred             HHHHHHHHHHhCCCEEEec
Confidence            3444567788898888754

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=92.85  E-value=1.9  Score=40.56  Aligned_cols=143  Identities=13%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-----------eCCCH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-----------DTFYS  299 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-----------DT~~~  299 (480)
                      .+.+++++.++..   |||++.+=..--.    ..+.    +.+..++..+++.    ++|+-+           +..+-
T Consensus        10 ~~~~~~~~~~~~~---~~D~vElRvD~l~----~~~~----~~v~~~~~~lr~~----~~PiI~T~R~~~eGG~~~~~~~   74 (219)
T 2egz_A           10 TNFSENLKKAKEK---GADIVELRVDQFS----DTSL----NYVKEKLEEVHSQ----GLKTILTIRSPEEGGREVKNRE   74 (219)
T ss_dssp             TTHHHHHHHHHHH---TCSEEEEEGGGCS----CCCH----HHHHHHHHHHHHT----TCEEEEECCCGGGTCCCCTTHH
T ss_pred             CCHHHHHHHHHHc---CCCEEEEEecccc----ccCH----HHHHHHHHHHHhc----CCcEEEEEeehhccCCCHHHHH
Confidence            4678888888773   9999999764321    1221    3444556666653    356533           34455


Q ss_pred             HHHHHHHHcCCCEEecCCCCCC--CchHHHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 038230          300 KVASEAVGKGAHIVNDVSAGQL--DPDMYKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAE  375 (480)
Q Consensus       300 ~v~~aaL~~G~~iINdVsg~~~--d~~m~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~  375 (480)
                      +.++.+++. +++| ||.-...  .+.+.+.+++.|+.+|+. |+ .++|.                 .+.+.++++++.
T Consensus        75 ~ll~~~~~~-~d~i-DvEl~~~~~~~~l~~~~~~~g~kvI~S~Hdf~~tp~-----------------~~el~~~~~~~~  135 (219)
T 2egz_A           75 ELFEELSPL-SDYT-DIELSSRGLLVKLYNITKEAGKKLIISYHNFELTPP-----------------NWIIREVLREGY  135 (219)
T ss_dssp             HHHHHHTTT-SSEE-EEETTCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC-----------------HHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CCEE-EEEccCCccHHHHHHHHHHcCCEEEEEecCCCCCcC-----------------HHHHHHHHHHHH
Confidence            788888888 8888 5654331  146788888999998876 43 45553                 144567788888


Q ss_pred             HCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcE
Q 038230          376 LSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPI  413 (480)
Q Consensus       376 ~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pi  413 (480)
                      +.|- -=+|..=     +++.++++.+++-.+....|+
T Consensus       136 ~~ga-ivKia~~-----a~~~~D~l~ll~~~~~~~~P~  167 (219)
T 2egz_A          136 RYGG-IPKIAVK-----ANSYEDVARLLCISRQVEGEK  167 (219)
T ss_dssp             HTTS-EEEEEEE-----CSSHHHHHHHHHHHTTSCSCB
T ss_pred             HcCC-EEEEEEc-----cCCHHHHHHHHHHHHhCCCCE
Confidence            8882 2266554     478889988887543446674

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=92.75  E-value=1.5  Score=41.56  Aligned_cols=131  Identities=13%  Similarity=0.220  Sum_probs=84.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGA  310 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~  310 (480)
                      +.+++++.++.+++.|+++|-+..-+  |.      ..|      .++.+++.+  .++.+..+| ...+-++.|+++|+
T Consensus        36 ~~~~~~~~~~al~~gGv~~iel~~k~--~~------~~~------~i~~l~~~~--~~~~igagtvl~~d~~~~A~~aGA   99 (225)
T 1mxs_A           36 REEDILPLADALAAGGIRTLEVTLRS--QH------GLK------AIQVLREQR--PELCVGAGTVLDRSMFAAVEAAGA   99 (225)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS--TH------HHH------HHHHHHHHC--TTSEEEEECCCSHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC--cc------HHH------HHHHHHHhC--cccEEeeCeEeeHHHHHHHHHCCC
Confidence            45678999999999999999998421  11      111      234344332  245554444 45689999999999


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG  389 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg  389 (480)
                      +.+  +++. .++++.+.++++|.+++. .++   |                       +.+..|.++|.+  =|=+   
T Consensus       100 d~v--~~p~-~d~~v~~~~~~~g~~~i~G~~t---~-----------------------~e~~~A~~~Gad--~vk~---  145 (225)
T 1mxs_A          100 QFV--VTPG-ITEDILEAGVDSEIPLLPGIST---P-----------------------SEIMMGYALGYR--RFKL---  145 (225)
T ss_dssp             SSE--ECSS-CCHHHHHHHHHCSSCEECEECS---H-----------------------HHHHHHHTTTCC--EEEE---
T ss_pred             CEE--EeCC-CCHHHHHHHHHhCCCEEEeeCC---H-----------------------HHHHHHHHCCCC--EEEE---
Confidence            999  4554 489999999999988874 221   1                       234556788986  2334   


Q ss_pred             CCCccChhHHHHHHHhcc--cCCCcEE
Q 038230          390 LGFSKKAEHNLDILLGLA--ASHAPIL  414 (480)
Q Consensus       390 iGf~k~~~~~~~~lr~l~--~~g~Pil  414 (480)
                        |........+.|+.++  .+++|++
T Consensus       146 --FPa~~~~G~~~lk~i~~~~~~ipvv  170 (225)
T 1mxs_A          146 --FPAEISGGVAAIKAFGGPFGDIRFC  170 (225)
T ss_dssp             --TTHHHHTHHHHHHHHHTTTTTCEEE
T ss_pred             --ccCccccCHHHHHHHHhhCCCCeEE
Confidence              4421111356677663  3478875

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=92.47  E-value=1.7  Score=42.57  Aligned_cols=106  Identities=20%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             cC-CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCC------
Q 038230          230 FQ-SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFY------  298 (480)
Q Consensus       230 ~~-~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~------  298 (480)
                      |. +++.+.+.++++++.||.-+=|=.+...++...++.++-.+++.-++++-...    ++|+-|    |++-      
T Consensus        87 yg~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~----g~~~~i~aRtda~~~~~g~~  162 (275)
T 2ze3_A           87 YGHAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDAS----GVPVFLNARTDTFLKGHGAT  162 (275)
T ss_dssp             SSSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHH----TSCCEEEEECCTTTTTCSSS
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhc----CCCeEEEEechhhhcccccc
Confidence            54 78999999999999999999886554346667888877777776666554432    344444    5532      


Q ss_pred             H-HHHHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230          299 S-KVASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       299 ~-~v~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh  340 (480)
                      + +-++++++       +||++|- +-+....+.+..++++.+.|+.++.
T Consensus       163 ~~~~~~~ai~Ra~ay~eAGAd~i~-~e~~~~~~~~~~i~~~~~~P~n~~~  211 (275)
T 2ze3_A          163 DEERLAETVRRGQAYADAGADGIF-VPLALQSQDIRALADALRVPLNVMA  211 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEE-CTTCCCHHHHHHHHHHCSSCEEEEC
T ss_pred             chhhHHHHHHHHHHHHHCCCCEEE-ECCCCCHHHHHHHHHhcCCCEEEec
Confidence            1 22344433       5999997 4444312678888888999987664

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=92.24  E-value=1.5  Score=43.53  Aligned_cols=136  Identities=16%  Similarity=0.208  Sum_probs=88.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQST------RPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKV  301 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eSt------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v  301 (480)
                      |.+++.+.+.++++++.||.-+=|=.+..      .++...++.+|-.+|+.-++++-..    .+..|  =.|++-.+-
T Consensus        94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~----~~~~I~ARTDa~~~~g  169 (298)
T 3eoo_A           94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTD----ETFVIMARTDAAAAEG  169 (298)
T ss_dssp             SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSS----TTSEEEEEECTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccC----CCeEEEEeehhhhhcC
Confidence            34788899999999999999988866542      2345577887778887666554321    24333  347775554


Q ss_pred             HHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC-CCCCCccccccccchhhHHHHHHHHHHHHHHH
Q 038230          302 ASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRD  373 (480)
Q Consensus       302 ~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~  373 (480)
                      +++|++       +|||+|- +.+....+++..+++..+.|+++... .|.+..      +               ..+.
T Consensus       170 ldeai~Ra~ay~~AGAD~if-~~~~~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~------~---------------~~~e  227 (298)
T 3eoo_A          170 IDAAIERAIAYVEAGADMIF-PEAMKTLDDYRRFKEAVKVPILANLTEFGSTPL------F---------------TLDE  227 (298)
T ss_dssp             HHHHHHHHHHHHHTTCSEEE-ECCCCSHHHHHHHHHHHCSCBEEECCTTSSSCC------C---------------CHHH
T ss_pred             HHHHHHHHHhhHhcCCCEEE-eCCCCCHHHHHHHHHHcCCCeEEEeccCCCCCC------C---------------CHHH
Confidence            444443       5999997 55554337788899999999876443 222111      0               0234


Q ss_pred             HHHCCCCCCCEEEecCCCCcc
Q 038230          374 AELSGIPAWRIIIDPGLGFSK  394 (480)
Q Consensus       374 a~~~Gi~~~~IilDPgiGf~k  394 (480)
                      +.+.|+.   +++=|...|-.
T Consensus       228 L~~lGv~---~v~~~~~~~ra  245 (298)
T 3eoo_A          228 LKGANVD---IALYCCGAYRA  245 (298)
T ss_dssp             HHHTTCC---EEEECSHHHHH
T ss_pred             HHHcCCe---EEEEchHHHHH
Confidence            5689995   77777666533

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...

Probab=91.91  E-value=2.7  Score=40.93  Aligned_cols=195  Identities=15%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCC---------CCCCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGA---------QSTRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK  300 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~  300 (480)
                      -|.+.+++.|+++.+.|+++-+++.         .-|.|+ ......++-++.+    ..+.+.   .++|+.-+-+++.
T Consensus        14 e~~~~~~~~A~~l~~~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l----~~~~~e---~Glp~~te~~d~~   86 (267)
T 2nwr_A           14 ESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKAL----RKVKEE---FGLKITTDIHESW   86 (267)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHH----HHHHHH---HCCEEEEECSSGG
T ss_pred             CCHHHHHHHHHHHHHHHHhhcCccEEEeeccccCCCCCCCCCcCccHHHHHHHH----HHHHHh---cCCeEEEecCCHH
Confidence            4789999999999999877633441         233444 2233334445443    333333   3899999999999


Q ss_pred             HHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230          301 VASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI  379 (480)
Q Consensus       301 v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi  379 (480)
                      .++...+ .+|++- |.+.. ..-+++.-+++.+.||++-.  |+-.++++                ....++.+...|-
T Consensus        87 ~~~~l~~-~vd~~~-IgA~~~rn~~ll~~~a~~~~PV~lK~--G~~~t~~e----------------~~~Av~~i~~~GN  146 (267)
T 2nwr_A           87 QAEPVAE-VADIIQ-IPAFLCRQTDLLLAAAKTGRAVNVKK--GQFLAPWD----------------TKNVVEKLKFGGA  146 (267)
T ss_dssp             GHHHHHT-TCSEEE-ECGGGTTCHHHHHHHHTTTSEEEEEC--CTTCCGGG----------------GHHHHHHHHHTTC
T ss_pred             hHHHHHh-cCCEEE-ECcccccCHHHHHHHHcCCCcEEEeC--CCCCCHHH----------------HHHHHHHHHHcCC
Confidence            9998877 688875 44322 23458888889999998843  22222211                1234566778887


Q ss_pred             CCCCE-EEecCCCCccCh-hHHHHHHHhcccCCCcEEEeecccccc-ccccCCCCcCcccHHHHHHHHHHHHcCCc--EE
Q 038230          380 PAWRI-IIDPGLGFSKKA-EHNLDILLGLAASHAPILIGPSRKRFL-GEICNRPSADERDPATIASITAGVLGGAN--IV  454 (480)
Q Consensus       380 ~~~~I-ilDPgiGf~k~~-~~~~~~lr~l~~~g~Pil~G~SrKsfi-~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--Il  454 (480)
                      +  ++ ++-=|..|..+. .-++..+..++..+ |+++=.|.--.. +-..+.. ..+|.... .++..|+..|++  ++
T Consensus       147 ~--~i~L~~rG~~~~y~~~~~dl~~i~~lk~~~-pVivD~sH~~q~p~G~s~hs-~g~~~~~~-~ia~aava~Ga~G~mI  221 (267)
T 2nwr_A          147 K--EIYLTERGTTFGYNNLVVDFRSLPIMKQWA-KVIYDATHSVQLPGGLGDKS-GGMREFIF-PLIRAAVAVGCDGVFM  221 (267)
T ss_dssp             S--SEEEEECCEECSSSCEECCTTHHHHHTTTS-EEEEETTGGGCCTTC-------CCGGGHH-HHHHHHHHHCCSEEEE
T ss_pred             C--eEEEEECCCCCCCCccccCHHHHHHHHHcC-CEEEcCCcccccCCCcCcCC-CCchhHHH-HHHHHHHHcCCCEEEE
Confidence            6  44 455555442211 11233333333346 998843322000 0000000 11233322 223345578995  89


Q ss_pred             EcC
Q 038230          455 RVH  457 (480)
Q Consensus       455 RvH  457 (480)
                      -+|
T Consensus       222 E~H  224 (267)
T 2nwr_A          222 ETH  224 (267)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            899

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=91.89  E-value=0.89  Score=43.47  Aligned_cols=150  Identities=11%  Similarity=0.163  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--------------C
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--------------F  297 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--------------~  297 (480)
                      +.+++++.+++..+.|||++.+=...-.    ..+    .+.+...++.+++..  .++||-+--              .
T Consensus        15 ~~~e~~~~~~~~~~~~~D~vElRvD~l~----~~~----~~~v~~~~~~lr~~~--~~~PiI~T~R~~~eGG~~~~~~~~   84 (238)
T 1sfl_A           15 SIEETLIQKINHRIDAIDVLELRIDQFE----NVT----VDQVAEMITKLKVMQ--DSFKLLVTYRTKLQGGYGQFTNDS   84 (238)
T ss_dssp             ---CHHHHHHHHTTTTCSEEEEECTTST----TCC----HHHHHHHHHHHC-----CCSEEEEECCBGGGTSCBCCCHHH
T ss_pred             CHHHHHHHHHHhhhcCCCEEEEEecccc----cCC----HHHHHHHHHHHHHhc--cCCCEEEEeeccccCCCCCCCHHH
Confidence            4578899999999999999999764321    122    455666677777652  156764321              2


Q ss_pred             CHHHHHHHHHc-CCCEEecCCCCC--CC---chHHHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHH
Q 038230          298 YSKVASEAVGK-GAHIVNDVSAGQ--LD---PDMYKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       298 ~~~v~~aaL~~-G~~iINdVsg~~--~d---~~m~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      +-+.++.+++. |+++| ||--..  .+   .++.+.+.+.++.+|+. |+ .++|.                 .+.+.+
T Consensus        85 ~~~ll~~~~~~~~~d~i-DvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~-----------------~~el~~  146 (238)
T 1sfl_A           85 YLNLISDLANINGIDMI-DIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPP-----------------LDELQF  146 (238)
T ss_dssp             HHHHHHHGGGCTTCCEE-EEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC-----------------HHHHHH
T ss_pred             HHHHHHHHHHhCCCCEE-EEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcC-----------------HHHHHH
Confidence            33567888887 58887 465432  22   23556667789999986 43 45553                 145567


Q ss_pred             HHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230          370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL  414 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil  414 (480)
                      +++++.+.|-+-=+|..     .+++..+++.+++-.    .....|++
T Consensus       147 ~~~~~~~~gaDivKia~-----~a~~~~D~l~ll~~~~~~~~~~~~P~I  190 (238)
T 1sfl_A          147 IFFKMQKFNPEYVKLAV-----MPHNKNDVLNLLQAMSTFSDTMDCKVV  190 (238)
T ss_dssp             HHHHHHTTCCSEEEEEE-----CCSSHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHcCCCEEEEEe-----cCCCHHHHHHHHHHHHHHhhcCCCCEE
Confidence            88888888865335554     357788888887643    22567853

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=91.85  E-value=2.5  Score=39.28  Aligned_cols=84  Identities=29%  Similarity=0.422  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-CHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-YSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-~~~v~~aaL~~G~~i  312 (480)
                      +++++.++.+++.|+++|-+..-+  |        ...    ..++.+++ .   ++.+..+|. ..+-++.|+++|++.
T Consensus        25 ~~~~~~~~~l~~gGv~~iel~~k~--~--------~~~----~~i~~~~~-~---~~~~gag~vl~~d~~~~A~~~GAd~   86 (207)
T 2yw3_A           25 EDLLGLARVLEEEGVGALEITLRT--E--------KGL----EALKALRK-S---GLLLGAGTVRSPKEAEAALEAGAAF   86 (207)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEECSS--T--------HHH----HHHHHHTT-S---SCEEEEESCCSHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCC--h--------HHH----HHHHHHhC-C---CCEEEeCeEeeHHHHHHHHHcCCCE
Confidence            457889999999999999998421  1        111    12333443 2   455555553 678999999999999


Q ss_pred             EecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          313 VNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       313 INdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +  +++. .+.++.+.++++|.+++.
T Consensus        87 v--~~~~-~d~~v~~~~~~~g~~~i~  109 (207)
T 2yw3_A           87 L--VSPG-LLEEVAALAQARGVPYLP  109 (207)
T ss_dssp             E--EESS-CCHHHHHHHHHHTCCEEE
T ss_pred             E--EcCC-CCHHHHHHHHHhCCCEEe
Confidence            9  4553 478899999999998875

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.72  E-value=1.9  Score=42.88  Aligned_cols=136  Identities=17%  Similarity=0.170  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCH--
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTR------PMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYS--  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStr------P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~--  299 (480)
                      |.+++.+.+.++++++.||.-+=|=.+...      ++...++.+|-.+|+.-+.++-.+.-  .++.|  =.|++-.  
T Consensus        99 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~--~d~~I~ARTDa~~~~g  176 (307)
T 3lye_A           99 YGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR--SDFVLIARTDALQSLG  176 (307)
T ss_dssp             SSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT--CCCEEEEEECCHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC--CCeEEEEechhhhccC
Confidence            345788999999999999999988765421      23457787777888877776654321  13333  3466544  


Q ss_pred             --HHHHHH---HHcCCCEEecCCCCCCCchHHHHHHhcC-CCEEEE-cCCC-CCCccccccccchhhHHHHHHHHHHHHH
Q 038230          300 --KVASEA---VGKGAHIVNDVSAGQLDPDMYKVVAGLK-VPYVAM-HMRG-DPSTMQNEENLQYDDVCKQVASELYSKV  371 (480)
Q Consensus       300 --~v~~aa---L~~G~~iINdVsg~~~d~~m~~l~~~~~-~~vVlm-h~~g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i  371 (480)
                        +.++.|   .++|||+|- +.+....+++..+++... .|+++. -..| .|.-                      ..
T Consensus       177 ldeAi~Ra~ay~eAGAD~if-i~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~----------------------t~  233 (307)
T 3lye_A          177 YEECIERLRAARDEGADVGL-LEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLI----------------------TV  233 (307)
T ss_dssp             HHHHHHHHHHHHHTTCSEEE-ECCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCC----------------------CH
T ss_pred             HHHHHHHHHHHHHCCCCEEE-ecCCCCHHHHHHHHHHccCCceeEEeecCCCCCCC----------------------CH
Confidence              344444   335999997 555542367788888775 888652 2222 3310                      02


Q ss_pred             HHHHHCCCCCCCEEEecCCCCc
Q 038230          372 RDAELSGIPAWRIIIDPGLGFS  393 (480)
Q Consensus       372 ~~a~~~Gi~~~~IilDPgiGf~  393 (480)
                      +.+.+.|+   ++++=|...+.
T Consensus       234 ~eL~~lGv---~~v~~~~~~~r  252 (307)
T 3lye_A          234 EEAKAMGF---RIMIFSFATLA  252 (307)
T ss_dssp             HHHHHHTC---SEEEEETTTHH
T ss_pred             HHHHHcCC---eEEEEChHHHH
Confidence            34467899   58888877663

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=91.57  E-value=3.1  Score=41.00  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+.
T Consensus        21 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-eEr~~v~~~~~~~~~gr---vpViaGvg~~   91 (301)
T 1xky_A           21 VTP--FDINGN-IDFAKTTKLVNYLIDNGTTAIVVGG-TTGES-PTLTS-EEKVALYRHVVSVVDKR---VPVIAGTGSN   91 (301)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             ECc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---ceEEeCCCCC
Confidence            688  765554 6899999999999999999999987 44433 23554 5555555544 343322   1333444443


Q ss_pred             C-HHH---HHHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          298 Y-SKV---ASEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~-~~v---~~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      + .++   ++.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  146 (301)
T 1xky_A           92 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV  146 (301)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3 333   33445569997766654211   13333    455567899998664

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=91.57  E-value=1.6  Score=43.88  Aligned_cols=136  Identities=18%  Similarity=0.283  Sum_probs=82.4

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK  308 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~  308 (480)
                      +..+.+++++.++++.+.|+.-|-+|+..+.|..  .    ..+++..+++.+++..  ..+-++..+..++.++.-.++
T Consensus        97 ~~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~--~----~~~~l~~ll~~ik~~g--~~i~~t~G~l~~e~l~~L~~a  168 (369)
T 1r30_A           97 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHE--R----DMPYLEQMVQGVKAMG--LEACMTLGTLSESQAQRLANA  168 (369)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCCT--T----THHHHHHHHHHHHHTT--SEEEEECSSCCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCCc--C----CHHHHHHHHHHHHHcC--CeEEEecCCCCHHHHHHHHHC
Confidence            3478999999999999999999888763323321  1    2456666777777641  123356677788888888888


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |++.++ ++-.. +++.++.+..             ..+        +        +...+.++.+.++|+.   +-++-
T Consensus       169 Gvd~v~-i~les-~~e~~~~i~~-------------~~~--------~--------~~~l~~i~~a~~~Gi~---v~~~~  214 (369)
T 1r30_A          169 GLDYYN-HNLDT-SPEFYGNIIT-------------TRT--------Y--------QERLDTLEKVRDAGIK---VCSGG  214 (369)
T ss_dssp             CCCEEE-CCCBS-CHHHHHHHCC-------------SSC--------H--------HHHHHHHHHHHHHHCE---EECCE
T ss_pred             CCCEEe-ecCcC-CHHHHHHhCC-------------CCC--------H--------HHHHHHHHHHHHcCCe---eeeee
Confidence            888776 33222 4555433221             001        1        2223556666777873   65555


Q ss_pred             CCCCccChhHHHHHHHhc
Q 038230          389 GLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       389 giGf~k~~~~~~~~lr~l  406 (480)
                      .+|++.+.++-.++++.+
T Consensus       215 I~Gl~et~ed~~~~l~~l  232 (369)
T 1r30_A          215 IVGLGETVKDRAGLLLQL  232 (369)
T ss_dssp             EECSSCCHHHHHHHHHHH
T ss_pred             EeeCCCCHHHHHHHHHHH
Confidence            456666665555555554

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=91.54  E-value=2.3  Score=40.62  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHcCCCE--EEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEE
Q 038230          236 AVSQVRLMISEGADM--IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       236 a~~~A~~~v~~GAdi--IDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iI  313 (480)
                      ..+..+.+.+.|||+  +|+==...-|+...-         .++++.|++..+. |+.+.+|- ....++.++++||++|
T Consensus        28 l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G---------~~~v~~lr~~~~~-DvhLMv~~-p~~~i~~~~~aGAd~i   96 (237)
T 3cu2_A           28 LNEEVTTLLENQINVLHFDIADGQFSSLFTVG---------AIGIKYFPTHCFK-DVHLMVRN-QLEVAKAVVANGANLV   96 (237)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC---------THHHHTSCTTSEE-EEEEECSC-HHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHcCCCEEEEEEecCccccchhhh---------HHHHHHHhhhCCC-CeEEEEEC-HHHHHHHHHHcCCCEE
Confidence            344456666899998  566100111332111         1467777776433 78888872 2467888999999995


Q ss_pred             ecCCCCCCC--chHHHHHHhc
Q 038230          314 NDVSAGQLD--PDMYKVVAGL  332 (480)
Q Consensus       314 NdVsg~~~d--~~m~~l~~~~  332 (480)
                      - |-.+..+  .+.++.++++
T Consensus        97 t-vH~ea~~~~~~~i~~i~~~  116 (237)
T 3cu2_A           97 T-LQLEQYHDFALTIEWLAKQ  116 (237)
T ss_dssp             E-EETTCTTSHHHHHHHHTTC
T ss_pred             E-EecCCcccHHHHHHHHHhc
Confidence            4 3333322  4677888888

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=91.52  E-value=3.1  Score=37.94  Aligned_cols=65  Identities=22%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN  314 (480)
                      +..+.++.+.+.||++|-+..    |+   .+. ++...+...+..+...   .++++.++    +-++.|.++|++.|-
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~----~~---~~~-~~~~~~~~~l~~~~~~---~~v~v~v~----~~~~~a~~~gad~v~   91 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRI----KN---APT-REMYEIGKTLRQLTRE---YDALFFVD----DRVDVALAVDADGVQ   91 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECC----CS---CCH-HHHHHHHHHHHHHHHH---TTCEEEEE----SCHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHHHCCCCEEEECC----CC---CCH-HHHHHHHHHHHHHHHH---cCCeEEEc----ChHHHHHHcCCCEEE
Confidence            466778889999999998874    21   122 2222222223333222   27788886    234677888999884

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=91.18  E-value=1.3  Score=44.37  Aligned_cols=182  Identities=11%  Similarity=0.047  Sum_probs=94.2

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC--C-
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK-----ISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF--Y-  298 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~-----v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~--~-  298 (480)
                      ..++.++.++.++.+.+.|.++|.+|.-+ .|++..     ..+.|.++++..    +      .+.+++.  ...  + 
T Consensus        19 ~~~~~~~k~~ia~~L~~aGv~~IEvg~~~-~p~~~f~~~~~~~~~e~l~~i~~----~------~~~~~~~L~r~~~~~~   87 (320)
T 3dxi_A           19 WDFNSKIVDAYILAMNELPIDYLEVGYRN-KPSKEYMGKFGYTPVSVLKHLRN----I------STKKIAIMLNEKNTTP   87 (320)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCCEEEEEECC-SCCSSCCCHHHHCCHHHHHHHHH----H------CCSEEEEEEEGGGCCG
T ss_pred             CcCCHHHHHHHHHHHHHhCCCEEEEeccc-CCccccccccccChHHHHHHHhh----c------cCCeEEEEecCCCCCh
Confidence            45788999999999999999999999643 454321     011344443322    2      2445444  332  2 


Q ss_pred             --HHHHHHHHHcCCCEEecCCCCCCCc---hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHH
Q 038230          299 --SKVASEAVGKGAHIVNDVSAGQLDP---DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRD  373 (480)
Q Consensus       299 --~~v~~aaL~~G~~iINdVsg~~~d~---~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~  373 (480)
                        -+-+..|.+.|++++.=.+....-+   ++++.++++|..+...-+...|-+..+    .|          + ..+..
T Consensus        88 ~dv~~~~~a~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~----~~----------l-~~~~~  152 (320)
T 3dxi_A           88 EDLNHLLLPIIGLVDMIRIAIDPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMN----GF----------L-SKLKA  152 (320)
T ss_dssp             GGHHHHHGGGTTTCSEEEEEECGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGST----TS----------G-GGGGG
T ss_pred             hhHHHHHHhhhcCCCEEEEEecHHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHH----HH----------H-HHHHH
Confidence              2333344557999876443221113   345557888987775332222221100    01          1 11112


Q ss_pred             HHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCC
Q 038230          374 AELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGA  451 (480)
Q Consensus       374 a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga  451 (480)
                       .+.|..  .|.| |- .|.. ++.+..++++.+ +..+.|+-+..-               +-.+...+-+..|++.|+
T Consensus       153 -~~~G~~--~i~l~Dt-~G~~-~P~~~~~lv~~l~~~~~~~i~~H~H---------------n~~G~a~an~laA~~aGa  212 (320)
T 3dxi_A          153 -IDKIAD--LFCMVDS-FGGI-TPKEVKNLLKEVRKYTHVPVGFHGH---------------DNLQLGLINSITAIDDGI  212 (320)
T ss_dssp             -GTTTCS--EEEEECT-TSCC-CHHHHHHHHHHHHHHCCSCEEEECB---------------CTTSCHHHHHHHHHHTTC
T ss_pred             -hhCCCC--EEEECcc-cCCC-CHHHHHHHHHHHHHhCCCeEEEEeC---------------CCCccHHHHHHHHHHhCC
Confidence             256865  4433 43 4443 344555666666 345667654321               111223333455778888


Q ss_pred             cEEEc
Q 038230          452 NIVRV  456 (480)
Q Consensus       452 ~IlRv  456 (480)
                      +++.+
T Consensus       213 ~~vd~  217 (320)
T 3dxi_A          213 DFIDA  217 (320)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            88755

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=91.15  E-value=3.6  Score=40.37  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=71.7

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV-LEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v-i~~l~~~~~~~~~pISIDT  296 (480)
                      -+||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++... ++.....   ..+.+.+=+
T Consensus        15 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---vpviaGvg~   85 (297)
T 3flu_A           15 LITP--MNQDGS-IHYEQLRDLIDWHIENGTDGIVAVG-TTGES-ATLSV-EEHTAVIEAVVKHVAKR---VPVIAGTGA   85 (297)
T ss_dssp             CCCC--BCTTSC-BCHHHHHHHHHHHHHTTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCC
T ss_pred             eecc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEeCc-cccCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEeCCC
Confidence            4688  876664 7999999999999999999999987 44433 24554 555555544 4444332   234445544


Q ss_pred             CCHHH----HHHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          297 FYSKV----ASEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~v----~~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+.    ++.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus        86 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~  141 (297)
T 3flu_A           86 NNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV  141 (297)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            44433    33445569997776654211  1 22    33455557999998764

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=91.14  E-value=0.73  Score=46.49  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT  296 (480)
                      =++|+-|.+||  .+.+++++.|+.+.+.|+|+|++-...+.+... +..+...    .+.++.+++.   .++||...-
T Consensus       225 Rls~~~~~~~g--~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~----~~~~~~ir~~---~~iPVi~~G  295 (349)
T 3hgj_A          225 RVSATDWGEGG--WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQ----VPFADAVRKR---VGLRTGAVG  295 (349)
T ss_dssp             EEESCCCSTTS--CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTT----HHHHHHHHHH---HCCEEEECS
T ss_pred             EeccccccCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCcccc----HHHHHHHHHH---cCceEEEEC
Confidence            45677777776  477899999999999999999996322222100 0011011    1234555554   267877765


Q ss_pred             --CCHHHHHHHHHcC-CCEEecCCCCCCCchHH-HHHHhcCC
Q 038230          297 --FYSKVASEAVGKG-AHIVNDVSAGQLDPDMY-KVVAGLKV  334 (480)
Q Consensus       297 --~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~-~l~~~~~~  334 (480)
                        ++++.++++|+.| +|+|-=-++.-.+|.+. +++++++.
T Consensus       296 gi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~~l~~  337 (349)
T 3hgj_A          296 LITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAAKALGV  337 (349)
T ss_dssp             SCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHHHHCCC
Confidence              5899999999998 99987555543467655 44445554

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=91.12  E-value=3.5  Score=40.94  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=73.1

Q ss_pred             EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEe
Q 038230          217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISID  295 (480)
                      -=+||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=
T Consensus        29 alvTP--f~~dg~-iD~~~l~~li~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~v~~~~gr---vpViaGvg   99 (315)
T 3si9_A           29 ALITP--FDDNGA-IDEKAFCNFVEWQITQGINGVSPVG-TTGES-PTLTH-EEHKRIIELCVEQVAKR---VPVVAGAG   99 (315)
T ss_dssp             ECCCC--BCTTSC-BCHHHHHHHHHHHHHTTCSEEECSS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCBEEECC
T ss_pred             eeECC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEeCc-cccCc-cccCH-HHHHHHHHHHHHHhCCC---CcEEEeCC
Confidence            34688  876554 7899999999999999999999987 44433 23454 5565555544 444332   24555555


Q ss_pred             CCCHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          296 TFYSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       296 T~~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+.+    +.|-+.|+|-+--+.-.-.  . ++    .-.++...+.|+++-+.
T Consensus       100 ~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~  156 (315)
T 3si9_A          100 SNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI  156 (315)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence            5444433    3455569997776654211  1 22    33455567999998764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=91.11  E-value=0.89  Score=48.34  Aligned_cols=67  Identities=12%  Similarity=0.210  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI  313 (480)
                      +..++++.++++|+|+|.|+..  .|+.         ..+...|+.+++..  .++||.+ +-...+.++++.++|++.|
T Consensus       256 d~~era~aLveaGvd~I~Id~a--~g~~---------~~v~~~i~~i~~~~--~~~~vi~g~v~t~e~a~~~~~aGad~i  322 (511)
T 3usb_A          256 DAMTRIDALVKASVDAIVLDTA--HGHS---------QGVIDKVKEVRAKY--PSLNIIAGNVATAEATKALIEAGANVV  322 (511)
T ss_dssp             THHHHHHHHHHTTCSEEEEECS--CTTS---------HHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHHTCSEE
T ss_pred             chHHHHHHHHhhccceEEeccc--ccch---------hhhhhHHHHHHHhC--CCceEEeeeeccHHHHHHHHHhCCCEE
Confidence            4578899999999999999853  3332         23444566666653  3566655 7788999999999999988


Q ss_pred             e
Q 038230          314 N  314 (480)
Q Consensus       314 N  314 (480)
                      -
T Consensus       323 ~  323 (511)
T 3usb_A          323 K  323 (511)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=91.04  E-value=5.3  Score=36.55  Aligned_cols=89  Identities=15%  Similarity=0.292  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCC
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGA  310 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~  310 (480)
                      +.++.++.++++.+.|+++|-+....  |.        ..+.    ++.+.+... ..+.|...+ ++++-++.|+++|+
T Consensus        17 d~~~~~~~~~~~~~~G~~~i~l~~~~--~~--------~~~~----i~~i~~~~~-~~l~vg~g~~~~~~~i~~a~~~Ga   81 (212)
T 2v82_A           17 TPDEALAHVGAVIDAGFDAVEIPLNS--PQ--------WEQS----IPAIVDAYG-DKALIGAGTVLKPEQVDALARMGC   81 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEETTS--TT--------HHHH----HHHHHHHHT-TTSEEEEECCCSHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC--hh--------HHHH----HHHHHHhCC-CCeEEEeccccCHHHHHHHHHcCC
Confidence            56889999999999999999996421  21        1222    233332210 123343333 45788999999999


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +.|-  .+. .+.++.+.++++|..+++
T Consensus        82 d~V~--~~~-~~~~~~~~~~~~g~~~~~  106 (212)
T 2v82_A           82 QLIV--TPN-IHSEVIRRAVGYGMTVCP  106 (212)
T ss_dssp             CEEE--CSS-CCHHHHHHHHHTTCEEEC
T ss_pred             CEEE--eCC-CCHHHHHHHHHcCCCEEe
Confidence            9994  333 367888999999987653

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=90.69  E-value=0.75  Score=46.45  Aligned_cols=83  Identities=17%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE------eCC----
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMA----TKISAEKELERLIPVLEAVLTMPEMEGKLVSV------DTF----  297 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a----~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI------DT~----  297 (480)
                      +++...+.|+...+.|+|.|||++.+..++.    -.-+.....+.+..+|+++++.   .++||++      |..    
T Consensus        68 ~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~---v~~PV~vKiR~g~~~~~~~~  144 (350)
T 3b0p_A           68 DPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA---VRVPVTVKMRLGLEGKETYR  144 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH---CSSCEEEEEESCBTTCCCHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH---hCCceEEEEecCcCccccHH
Confidence            4677888888888999999999975422110    0012234567788888888875   3778777      211    


Q ss_pred             -CHHHHHHHHHcCCCEEecCCC
Q 038230          298 -YSKVASEAVGKGAHIVNDVSA  318 (480)
Q Consensus       298 -~~~v~~aaL~~G~~iINdVsg  318 (480)
                       -.+.++.+.++|++.|. |++
T Consensus       145 ~~~~~a~~l~~aG~d~I~-V~~  165 (350)
T 3b0p_A          145 GLAQSVEAMAEAGVKVFV-VHA  165 (350)
T ss_dssp             HHHHHHHHHHHTTCCEEE-EEC
T ss_pred             HHHHHHHHHHHcCCCEEE-Eec
Confidence             13556677778999886 555

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=90.68  E-value=1.1  Score=42.11  Aligned_cols=154  Identities=17%  Similarity=0.198  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCC
Q 038230          235 AAVSQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGA  310 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~  310 (480)
                      +.++.|+.+.+.||+.|-+=..  +..++   ..       . +.++.+++.   .++|+-+  .-.+++-+++++++|+
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~-------~-~~i~~i~~~---~~ipv~v~ggi~~~~~~~~~l~~Ga   97 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG---SN-------H-ELLAEVVGK---LDVQVELSGGIRDDESLAAALATGC   97 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTSC---CC-------H-HHHHHHHHH---CSSEEEEESSCCSHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccCC---Ch-------H-HHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHcCC
Confidence            3566788999999999998321  11111   11       1 344555554   3678776  3567888999999999


Q ss_pred             CEEecCCCCCCCc-hHHHHHHhcCCCEEEEcC-C---CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          311 HIVNDVSAGQLDP-DMYKVVAGLKVPYVAMHM-R---GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       311 ~iINdVsg~~~d~-~m~~l~~~~~~~vVlmh~-~---g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      +.|---+....++ .+.+++++++..+++.-+ .   | ..+..-+   .+.+..    ....+.++.+.+.|+.  -|+
T Consensus        98 d~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~-~~~v~~~---g~~~~~----~~~~e~~~~~~~~G~~--~i~  167 (244)
T 2y88_A           98 ARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDG-EHRLRGR---GWETDG----GDLWDVLERLDSEGCS--RFV  167 (244)
T ss_dssp             SEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETT-EEEEEEG---GGTEEE----EEHHHHHHHHHHTTCC--CEE
T ss_pred             CEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCC-CCEEEEC---CccCCC----CCHHHHHHHHHhCCCC--EEE
Confidence            9886333222233 366677777755443211 0   0 0000000   000000    0123455666778986  576


Q ss_pred             E---ecCCCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230          386 I---DPGLGFSKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       386 l---DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                      +   +++.++. ..  +++.++++ +..++|++.
T Consensus       168 ~~~~~~~~~~~-g~--~~~~~~~l~~~~~ipvia  198 (244)
T 2y88_A          168 VTDITKDGTLG-GP--NLDLLAGVADRTDAPVIA  198 (244)
T ss_dssp             EEETTTTTTTS-CC--CHHHHHHHHTTCSSCEEE
T ss_pred             EEecCCccccC-CC--CHHHHHHHHHhCCCCEEE
Confidence            6   4432221 11  35666666 346889875

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=90.55  E-value=3.8  Score=40.98  Aligned_cols=117  Identities=16%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             EEEe--cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          215 GILN--LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       215 GIlN--~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      ||+-  +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+.....-    ++||
T Consensus        37 Gv~~a~vTP--F~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-eEr~~vi~~~ve~~~g----rvpV  106 (332)
T 2r8w_A           37 GLSAFPITP--ADEAGR-VDIEAFSALIARLDAAEVDSVGILG-STGIY-MYLTR-EERRRAIEAAATILRG----RRTL  106 (332)
T ss_dssp             EEEECCCCC--BCTTCC-BCHHHHHHHHHHHHHHTCSEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTT----SSEE
T ss_pred             CeeEEeeCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCC----CCcE
Confidence            5443  578  865554 6899999999999999999999987 44433 23554 5566655544333321    3554


Q ss_pred             --EEeCCC-HHHH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          293 --SVDTFY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       293 --SIDT~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                        .+=+.+ .+++   +.|-+.|+|-+--+.-.-.   ++++    -.++...+.|+++-+.
T Consensus       107 iaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~  168 (332)
T 2r8w_A          107 MAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN  168 (332)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence              454444 3333   3445569998876654211   1333    3455567899998664

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=90.50  E-value=4.8  Score=39.63  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=69.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT  296 (480)
                      +||  |-+.|. .|.+...++++.++++|+|-|=++| ||.-+. ..+. +|..++...+.....-    .+||-  +=+
T Consensus        25 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-ttGE~~-~Ls~-~Er~~v~~~~~~~~~g----rvpviaGvg~   94 (304)
T 3cpr_A           25 VTP--FTESGD-IDIAAGREVAAYLVDKGLDSLVLAG-TTGESP-TTTA-AEKLELLKAVREEVGD----RAKLIAGVGT   94 (304)
T ss_dssp             CCC--BCTTSC-BCHHHHHHHHHHHHHTTCCEEEESS-TTTTTT-TSCH-HHHHHHHHHHHHHHTT----TSEEEEECCC
T ss_pred             ecc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccChh-hCCH-HHHHHHHHHHHHHhCC----CCcEEecCCC
Confidence            688  865553 6899999999999999999999987 444332 3454 5566555544333221    35554  433


Q ss_pred             CC-HHH---HHHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          297 FY-SKV---ASEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v---~~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ .++   ++.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        95 ~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~  150 (304)
T 3cpr_A           95 NNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI  150 (304)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            33 333   33345569997766654211   23333    455567899998664

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=90.48  E-value=3.4  Score=40.76  Aligned_cols=115  Identities=18%  Similarity=0.244  Sum_probs=69.4

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      =+||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+
T Consensus        23 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gi~v~G-ttGE~-~~Lt~-~Er~~v~~~~~~~~~gr---vpviaGvg~   93 (304)
T 3l21_A           23 MVTP--FSGDGS-LDTATAARLANHLVDQGCDGLVVSG-TTGES-PTTTD-GEKIELLRAVLEAVGDR---ARVIAGAGT   93 (304)
T ss_dssp             CCCC--BCTTSC-BCHHHHHHHHHHHHHTTCSEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTT---SEEEEECCC
T ss_pred             EECC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEeCc-cccch-hhCCH-HHHHHHHHHHHHHhCCC---CeEEEeCCC
Confidence            3688  866554 7999999999999999999999987 44433 23454 5565555444 334322   133344433


Q ss_pred             CCHH-HH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230          297 FYSK-VA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~-v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      .+.+ ++   +.|-+.|+|-+--+.-.-.   ++++    -.++...+.|+++-+.
T Consensus        94 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  149 (304)
T 3l21_A           94 YDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI  149 (304)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3433 32   3344459997776654211   1333    3444557899998764

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=90.47  E-value=3.9  Score=40.61  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      =+||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+
T Consensus        32 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~Gi~v~G-tTGE~-~~Ls~-~Er~~v~~~~v~~~~gr---vpViaGvg~  102 (315)
T 3na8_A           32 TITP--FAADGG-LDLPALGRSIERLIDGGVHAIAPLG-STGEG-AYLSD-PEWDEVVDFTLKTVAHR---VPTIVSVSD  102 (315)
T ss_dssp             CCCC--BCTTSS-BCHHHHHHHHHHHHHTTCSEEECSS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCBEEECCC
T ss_pred             eeCc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---CcEEEecCC
Confidence            4677  875554 7999999999999999999999987 33332 23454 5555555544 344332   245556655


Q ss_pred             CCHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          297 FYSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+.+    +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus       103 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  158 (315)
T 3na8_A          103 LTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN  158 (315)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            554432    3445569998877754211  1 22    34455567899998764

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=90.46  E-value=2.7  Score=41.34  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  | +.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...|. +|..++...+ +.....   ..+.+.+=+.
T Consensus        10 vTP--f-~dg~-iD~~~l~~lv~~li~~Gv~gi~v~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---vpviaGvg~~   79 (297)
T 2rfg_A           10 ITP--F-INGQ-VDEKALAGLVDWQIKHGAHGLVPVG-TTGES-PTLTE-EEHKRVVALVAEQAQGR---VPVIAGAGSN   79 (297)
T ss_dssp             CCC--E-ETTE-ECHHHHHHHHHHHHHTTCSEEECSS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCBEEECCCS
T ss_pred             ecC--c-CCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccch-hhCCH-HHHHHHHHHHHHHhCCC---CeEEEccCCC
Confidence            688  8 6554 6899999999999999999999987 34332 23554 5555555444 344322   2344555444


Q ss_pred             CH-HHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          298 YS-KVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      +. +++   +.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  134 (297)
T 2rfg_A           80 NPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNI  134 (297)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            43 333   3444569998876654311   13333    455567899998664

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=90.40  E-value=4.2  Score=39.74  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      -+||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+
T Consensus         9 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---~pviaGvg~   79 (291)
T 3tak_A            9 IVTP--MLKDGG-VDWKSLEKLVEWHIEQGTNSIVAVG-TTGEA-STLSM-EEHTQVIKEIIRVANKR---IPIIAGTGA   79 (291)
T ss_dssp             CCCC--BCTTSC-BCHHHHHHHHHHHHHHTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCC
T ss_pred             eECC--CCCCCC-cCHHHHHHHHHHHHHCCCCEEEECc-ccccc-ccCCH-HHHHHHHHHHHHHhCCC---CeEEEeCCC
Confidence            3688  876554 7899999999999999999998887 44433 23454 5555555444 344332   234455544


Q ss_pred             CCHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          297 FYSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+.+    +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus        80 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~  135 (291)
T 3tak_A           80 NSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV  135 (291)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence            444332    3445569997776654211  1 23    33455557999998764

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=90.29  E-value=3.8  Score=40.07  Aligned_cols=114  Identities=11%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |.+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+.
T Consensus        10 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---~pviaGvg~~   80 (292)
T 2ojp_A           10 VTP--MDEKGN-VCRASLKKLIDYHVASGTSAIVSVG-TTGES-ATLNH-DEHADVVMMTLDLADGR---IPVIAGTGAN   80 (292)
T ss_dssp             CCC--BCTTSC-BCHHHHHHHHHHHHHHTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             ecc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccch-hhCCH-HHHHHHHHHHHHHhCCC---CcEEEecCCc
Confidence            688  865554 6899999999999999999999987 34433 23554 5555555444 343322   2344445444


Q ss_pred             C-HHHHHHH---HHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          298 Y-SKVASEA---VGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~-~~v~~aa---L~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      + .++++.+   -+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~  135 (292)
T 2ojp_A           81 ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV  135 (292)
T ss_dssp             SHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            4 3343333   3349997766654211   23333    444456899998664

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=90.16  E-value=0.96  Score=42.39  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEE
Q 038230          237 VSQVRLMISEGADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iI  313 (480)
                      .++++...+.|||+|.++++... |.-      +..   ..+++.+++..  .+.++.++...++.++.+.+.|+|+|
T Consensus        91 ~~~i~~~~~~Gad~V~l~~~~~~~~~~------~~~---~~~i~~i~~~~--~~~~v~~~~~t~~ea~~a~~~Gad~i  157 (234)
T 1yxy_A           91 MTEVDQLAALNIAVIAMDCTKRDRHDG------LDI---ASFIRQVKEKY--PNQLLMADISTFDEGLVAHQAGIDFV  157 (234)
T ss_dssp             HHHHHHHHTTTCSEEEEECCSSCCTTC------CCH---HHHHHHHHHHC--TTCEEEEECSSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHcCCCEEEEcccccCCCCC------ccH---HHHHHHHHHhC--CCCeEEEeCCCHHHHHHHHHcCCCEE
Confidence            45677889999999999986542 310      012   23455555532  26789999999999999999999999

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=90.15  E-value=3.9  Score=40.26  Aligned_cols=113  Identities=18%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT  296 (480)
                      +||  |-+.|. .|.+...+.++.++++|++-|-++| ||.-+ ...+. +|..++...+.....-    ++||-+  =+
T Consensus        20 vTP--F~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-eEr~~v~~~~~~~~~g----rvpViaGvg~   89 (303)
T 2wkj_A           20 LTP--FDQQQA-LDKASLRRLVQFNIQQGIDGLYVGG-STGEA-FVQSL-SEREQVLEIVAEEAKG----KIKLIAHVGC   89 (303)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCSEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTT----TSEEEEECCC
T ss_pred             EcC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECe-eccCh-hhCCH-HHHHHHHHHHHHHhCC----CCcEEEecCC
Confidence            688  765453 6899999999999999999999987 44433 23554 5566655544333321    456544  33


Q ss_pred             CC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcC-CCEEEEcC
Q 038230          297 FY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLK-VPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~-~~vVlmh~  341 (480)
                      .+ .+++   +.|-+.|+|-+--+...-.   +++++    .++...+ .|+++-+.
T Consensus        90 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~  146 (303)
T 2wkj_A           90 VSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI  146 (303)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            33 3333   3344569997766654211   13333    4455567 99998664

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=90.02  E-value=3.7  Score=40.71  Aligned_cols=122  Identities=15%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             cEEEEEEe--cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHcCCcC
Q 038230          211 TSVMGILN--LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV-LEAVLTMPEM  287 (480)
Q Consensus       211 ~~imGIlN--~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v-i~~l~~~~~~  287 (480)
                      +.+=|++-  +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++... ++.....   
T Consensus        22 ~~~~Gv~~a~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~v~~~~gr---   92 (314)
T 3qze_A           22 SMIAGSMVALVTP--FDAQGR-LDWDSLAKLVDFHLQEGTNAIVAVG-TTGES-ATLDV-EEHIQVIRRVVDQVKGR---   92 (314)
T ss_dssp             -CCCEEEEECCCC--BCTTSC-BCHHHHHHHHHHHHHHTCCEEEESS-GGGTG-GGCCH-HHHHHHHHHHHHHHTTS---
T ss_pred             ccCCeeEEeeECC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---
Confidence            33446544  577  876664 7999999999999999999999987 34332 23454 566665554 4444332   


Q ss_pred             CCCeEEEeCCCHHH-H---HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          288 EGKLVSVDTFYSKV-A---SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       288 ~~~pISIDT~~~~v-~---~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      ..+.+.+=+.+.+. +   +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus        93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  157 (314)
T 3qze_A           93 IPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV  157 (314)
T ss_dssp             SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred             CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            23444454444333 2   3444569997776654211  1 22    33455557999998764

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=90.00  E-value=0.89  Score=44.67  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHcCCC-EEEeCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          231 QSVEAAVSQVRLMISEGAD-MIDIGAQSTRPMATKIS-AEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAd-iIDIG~eStrP~a~~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      .+.++..+.|+.+.+.|+| +|+||..|  |....-+ -....+.+..+++.+++.   .++||.+
T Consensus       103 ~~~~~~~~~a~~~~~~g~d~~iein~~~--P~~~g~~~~g~~~e~~~~iv~~vr~~---~~~Pv~v  163 (311)
T 1jub_A          103 MSAAENIAMLKKIQESDFSGITELNLSC--PNVPGEPQLAYDFEATEKLLKEVFTF---FTKPLGV  163 (311)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSEEEEESCC--CCSSSCCCGGGCHHHHHHHHHHHTTT---CCSCEEE
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEeccC--CCCCCcccccCCHHHHHHHHHHHHHh---cCCCEEE
Confidence            3678899999999999999 99999854  3221100 011234567788888876   4778776

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=89.97  E-value=4.1  Score=40.95  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             EEEe--cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCe
Q 038230          215 GILN--LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKL  291 (480)
Q Consensus       215 GIlN--~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~p  291 (480)
                      ||+-  +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.+...   ..+.
T Consensus        34 Gv~~alvTP--F~~dg~-ID~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-eEr~~vi~~~ve~~~gr---vpVi  104 (343)
T 2v9d_A           34 GIIPPVSTI--FTADGQ-LDKPGTAALIDDLIKAGVDGLFFLG-SGGEF-SQLGA-EERKAIARFAIDHVDRR---VPVL  104 (343)
T ss_dssp             EECCEECCC--BCTTSS-BCHHHHHHHHHHHHHTTCSCEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEE
T ss_pred             CeEEeeECC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEeCc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---CcEE
Confidence            6543  688  865553 6899999999999999999999987 34433 23554 5565555544 333322   2334


Q ss_pred             EEEeCCCH-HHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          292 VSVDTFYS-KVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       292 ISIDT~~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      +.+=+.+. +++   +.|-+.|+|-+--+.-.-.   +++++    .++...+.|+++-+.
T Consensus       105 aGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~  165 (343)
T 2v9d_A          105 IGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF  165 (343)
T ss_dssp             EECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             EecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            44544443 333   3344569997766654211   23333    455567899998664

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=89.88  E-value=2.8  Score=41.22  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHc-CCcCCCCeEEEe
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV-LEAVLT-MPEMEGKLVSVD  295 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v-i~~l~~-~~~~~~~pISID  295 (480)
                      =+||  | +.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++... ++.... .   ..+.+.+=
T Consensus        16 ~vTP--f-~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~g~r---vpviaGvg   85 (301)
T 3m5v_A           16 LITP--F-KNGK-VDEQSYARLIKRQIENGIDAVVPVG-TTGES-ATLTH-EEHRTCIEIAVETCKGTK---VKVLAGAG   85 (301)
T ss_dssp             CCCC--E-ETTE-ECHHHHHHHHHHHHHTTCCEEECSS-TTTTG-GGSCH-HHHHHHHHHHHHHHTTSS---CEEEEECC
T ss_pred             eecC--c-CCCC-CCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCCC---CeEEEeCC
Confidence            3688  8 5554 7899999999999999999999987 44433 23454 555555544 444433 2   13334444


Q ss_pred             CCCHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          296 TFYSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       296 T~~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+.+    +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus        86 ~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  142 (301)
T 3m5v_A           86 SNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNV  142 (301)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            4343332    3344569997776654211  1 23    33455557999998764

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=89.78  E-value=6.4  Score=38.49  Aligned_cols=154  Identities=16%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             HHHHHHcCCCEEEeCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC------CHHH-HH---H
Q 038230          240 VRLMISEGADMIDIGA-----QSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF------YSKV-AS---E  304 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~-----eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~------~~~v-~~---a  304 (480)
                      |+-.-++|.|+|=+|.     .-..|...+++.+|-+..    .+.+.+-.  ...+|+.|+.      +++. ++   .
T Consensus        30 A~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h----~~aV~r~~--~~~~vvaD~pfgsy~~s~~~a~~na~r  103 (275)
T 1o66_A           30 AALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYH----TECVARGA--KNAMIVSDLPFGAYQQSKEQAFAAAAE  103 (275)
T ss_dssp             HHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHH----HHHHHHHC--SSSEEEEECCTTSSSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHH----HHHHHhhC--CCCeEEEECCCCCccCCHHHHHHHHHH
Confidence            4445579999998872     123455567776544444    34444421  1467889954      2443 33   4


Q ss_pred             HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccch-hhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230          305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY-DDVCKQVASELYSKVRDAELSGIPAWR  383 (480)
Q Consensus       305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~-~~v~~ev~~~l~~~i~~a~~~Gi~~~~  383 (480)
                      -+++|++.|| +-+...-.+.++.+.+.+.||+. |..=+|++......+.- ...  +..+.+.++...++++|-.   
T Consensus       104 l~kaGa~aVk-lEdg~e~~~~I~al~~agIpV~g-HiGLtPQs~~~~ggf~v~grt--~~a~~~i~rA~a~~eAGA~---  176 (275)
T 1o66_A          104 LMAAGAHMVK-LEGGVWMAETTEFLQMRGIPVCA-HIGLTPQSVFAFGGYKVQGRG--GKAQALLNDAKAHDDAGAA---  176 (275)
T ss_dssp             HHHTTCSEEE-EECSGGGHHHHHHHHHTTCCEEE-EEESCGGGTTC-------------CHHHHHHHHHHHHHTTCS---
T ss_pred             HHHcCCcEEE-ECCcHHHHHHHHHHHHcCCCeEe-eeccCceeecccCCeEEEeCh--HHHHHHHHHHHHHHHcCCc---
Confidence            5667999999 44432223455556678999773 54335554322111100 000  1124455667777899995   


Q ss_pred             EEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          384 IIIDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       384 IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                      .|+=+++-    .    ++.+++ +.+.+|++
T Consensus       177 ~ivlE~vp----~----~~a~~it~~l~iP~i  200 (275)
T 1o66_A          177 VVLMECVL----A----ELAKKVTETVSCPTI  200 (275)
T ss_dssp             EEEEESCC----H----HHHHHHHHHCSSCEE
T ss_pred             EEEEecCC----H----HHHHHHHHhCCCCEE
Confidence            55555651    1    234444 34577865

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=89.44  E-value=3.9  Score=40.29  Aligned_cols=84  Identities=15%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~  310 (480)
                      .+.+++++.++++.+.|+.-|-+.+.. .|..       ..+++..+++.+++..  ..+-++.....++.++.-.++|+
T Consensus        84 ls~eei~~~i~~~~~~g~~~i~~~gGe-~p~~-------~~~~~~~li~~i~~~~--~~i~~s~g~l~~e~l~~L~~ag~  153 (348)
T 3iix_A           84 MTPEEIVERARLAVQFGAKTIVLQSGE-DPYX-------MPDVISDIVKEIKKMG--VAVTLSLGEWPREYYEKWKEAGA  153 (348)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEESC-CGGG-------TTHHHHHHHHHHHTTS--CEEEEECCCCCHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeCC-CCCc-------cHHHHHHHHHHHHhcC--ceEEEecCCCCHHHHHHHHHhCC
Confidence            689999999999999999988886421 1221       1345666777777641  13345567778999988888898


Q ss_pred             CEEecCCCCCCCchH
Q 038230          311 HIVNDVSAGQLDPDM  325 (480)
Q Consensus       311 ~iINdVsg~~~d~~m  325 (480)
                      +.++ ++-...+++.
T Consensus       154 ~~v~-i~let~~~~~  167 (348)
T 3iix_A          154 DRYL-LRHETANPVL  167 (348)
T ss_dssp             CEEE-CCCBCSCHHH
T ss_pred             CEEe-eeeeeCCHHH
Confidence            8877 6544444443

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=89.21  E-value=1.6  Score=40.35  Aligned_cols=84  Identities=15%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND  315 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd  315 (480)
                      .++.++.+.+.||++|-+...+..|    ..... +..+...++.+.+.   .++++.++.    -++.|++.|++.|--
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~----~~~~~-~~~~~~~l~~~~~~---~~v~v~v~~----~~~~a~~~gad~v~l  100 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDA----LTGEA-RIKFAEKAQAACRE---AGVPFIVND----DVELALNLKADGIHI  100 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTC----CCHHH-HHHHHHHHHHHHHH---HTCCEEEES----CHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCH----hHHHH-HHHHHHHHHHHHHH---cCCeEEEcC----HHHHHHHcCCCEEEE
Confidence            6678888999999999988533222    11100 02222223333222   267787763    356788889998842


Q ss_pred             CCCCCCCchHHHHHHhcCC
Q 038230          316 VSAGQLDPDMYKVVAGLKV  334 (480)
Q Consensus       316 Vsg~~~d~~m~~l~~~~~~  334 (480)
                        +.. +..+..+.+.++.
T Consensus       101 --~~~-~~~~~~~~~~~g~  116 (227)
T 2tps_A          101 --GQE-DANAKEVRAAIGD  116 (227)
T ss_dssp             --CTT-SSCHHHHHHHHTT
T ss_pred             --CCC-ccCHHHHHHhcCC
Confidence              332 3455556555775

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=89.20  E-value=1.4  Score=46.67  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI  313 (480)
                      +..++|+.++++|||+|.|+..  .+..         ..+...|+.+++..  .++||.+ +...++.++++.++|+|.|
T Consensus       229 ~~~~~a~~l~~aG~d~I~id~a--~g~~---------~~~~~~v~~i~~~~--p~~~Vi~g~v~t~e~a~~l~~aGaD~I  295 (490)
T 4avf_A          229 DTGERVAALVAAGVDVVVVDTA--HGHS---------KGVIERVRWVKQTF--PDVQVIGGNIATAEAAKALAEAGADAV  295 (490)
T ss_dssp             THHHHHHHHHHTTCSEEEEECS--CCSB---------HHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHTTCSEE
T ss_pred             chHHHHHHHhhcccceEEeccc--CCcc---------hhHHHHHHHHHHHC--CCceEEEeeeCcHHHHHHHHHcCCCEE
Confidence            4678899999999999999852  2221         13334556666542  2667655 5788899999999999988


Q ss_pred             e
Q 038230          314 N  314 (480)
Q Consensus       314 N  314 (480)
                      -
T Consensus       296 ~  296 (490)
T 4avf_A          296 K  296 (490)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=89.14  E-value=0.63  Score=46.89  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=66.7

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--  295 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--  295 (480)
                      =++|+-|.++|  .+.++.++.|+.+.+.|+|+|+|-...+.+...+..+.-    -.+.++.+++.   .++||..-  
T Consensus       215 Rls~~~~~~~g--~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~----~~~~~~~ik~~---~~iPVi~~Gg  285 (340)
T 3gr7_A          215 RISASDYHPDG--LTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGY----QVPFAELIRRE---ADIPTGAVGL  285 (340)
T ss_dssp             EEESCCCSTTS--CCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTT----THHHHHHHHHH---TTCCEEEESS
T ss_pred             EeccccccCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccc----cHHHHHHHHHH---cCCcEEeeCC
Confidence            45677777776  356789999999999999999993211222000001111    11334555554   26776663  


Q ss_pred             CCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHH-HHhcCC
Q 038230          296 TFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKV-VAGLKV  334 (480)
Q Consensus       296 T~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l-~~~~~~  334 (480)
                      -++++.++++|+.| +|+|-=-++.-.+|.+..- ..+++.
T Consensus       286 I~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~l~~  326 (340)
T 3gr7_A          286 ITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARELGA  326 (340)
T ss_dssp             CCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHHCCC
Confidence            45899999999998 9988644443336776544 444553

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=89.01  E-value=1.8  Score=45.84  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV  313 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI  313 (480)
                      +..++|+.++++|||+|.|+..  .|..         ..+...|+.+++..  .++||.+ .-..++.++++.++|+|.|
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a--~g~~---------~~~~~~i~~ir~~~--p~~~Vi~g~v~t~e~a~~l~~aGaD~I  297 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSS--HGHS---------EGVLQRIRETRAAY--PHLEIIGGNVATAEGARALIEAGVSAV  297 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECS--CTTS---------HHHHHHHHHHHHHC--TTCCEEEEEECSHHHHHHHHHHTCSEE
T ss_pred             chHHHHHHHHhccCceEEeccc--cccc---------hHHHHHHHHHHHHC--CCceEEEcccCcHHHHHHHHHhCCCEE
Confidence            4577899999999999999953  2321         23344566666652  2677755 5678899999999999988


Q ss_pred             e
Q 038230          314 N  314 (480)
Q Consensus       314 N  314 (480)
                      -
T Consensus       298 ~  298 (496)
T 4fxs_A          298 K  298 (496)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=89.00  E-value=3.4  Score=40.39  Aligned_cols=114  Identities=18%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE-AVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~-~l~~~~~~~~~pISIDT  296 (480)
                      -+||  | +.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+. .....   ..+...+=+
T Consensus         9 ~vTP--f-~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---~pviaGvg~   78 (292)
T 2vc6_A            9 LVTP--F-ADDR-IDEVALHDLVEWQIEEGSFGLVPCG-TTGES-PTLSK-SEHEQVVEITIKTANGR---VPVIAGAGS   78 (292)
T ss_dssp             CCCC--E-ETTE-ECHHHHHHHHHHHHHTTCSEEETTS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCBEEECCC
T ss_pred             eecC--c-CCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---CcEEEecCC
Confidence            3688  8 6554 6899999999999999999999987 33332 23454 55665555443 33322   234445544


Q ss_pred             CC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          297 FY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ .+++   +.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        79 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~  134 (292)
T 2vc6_A           79 NSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNI  134 (292)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            34 3333   3345569997766654211   23443    456667899998664

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=88.98  E-value=15  Score=34.55  Aligned_cols=138  Identities=9%  Similarity=0.042  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeC--------CCHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDT--------FYSKV  301 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT--------~~~~v  301 (480)
                      .+.+++++.+   .+.|.+-|++....  +       +++++++.   +.+++.    ++.++ +-+        .++++
T Consensus        38 ~~~~~~l~~~---~~~G~~~vEl~~~~--~-------~~~~~~~~---~~l~~~----gl~v~~~~~~~~~~l~~~d~~~   98 (287)
T 3kws_A           38 ESLNEKLDFM---EKLGVVGFEPGGGG--L-------AGRVNEIK---QALNGR----NIKVSAICAGFKGFILSTDPAI   98 (287)
T ss_dssp             SSHHHHHHHH---HHTTCCEEECBSTT--C-------GGGHHHHH---HHHTTS----SCEECEEECCCCSCTTBSSHHH
T ss_pred             CCHHHHHHHH---HHcCCCEEEecCCc--h-------HHHHHHHH---HHHHHc----CCeEEEEecCCCCcCCCCCHHH
Confidence            3566655554   46799999998752  1       23344433   333443    66653 422        23333


Q ss_pred             HHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230          302 ASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA  381 (480)
Q Consensus       302 ~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~  381 (480)
                      -+++++.             -.+.++++++.|+++|++|..-.+.+ ...  +..++..+...+.|.+..+.|.++||  
T Consensus        99 r~~~~~~-------------~~~~i~~a~~lGa~~v~~~~g~~~~~-~~~--p~~~~~~~~~~~~l~~l~~~a~~~Gv--  160 (287)
T 3kws_A           99 RKECMDT-------------MKEIIAAAGELGSTGVIIVPAFNGQV-PAL--PHTMETRDFLCEQFNEMGTFAAQHGT--  160 (287)
T ss_dssp             HHHHHHH-------------HHHHHHHHHHTTCSEEEECSCCTTCC-SBC--CSSHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHH-------------HHHHHHHHHHcCCCEEEEecCcCCcC-CCC--CCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence            3333321             14678999999999999886311110 000  01244566677888999999999999  


Q ss_pred             CCEEEecCC----CCccChhHHHHHHHhc
Q 038230          382 WRIIIDPGL----GFSKKAEHNLDILLGL  406 (480)
Q Consensus       382 ~~IilDPgi----Gf~k~~~~~~~~lr~l  406 (480)
                       +|.+-|.-    .+..+..+..++++.+
T Consensus       161 -~l~lE~~~~~~~~~~~~~~~~~~ll~~v  188 (287)
T 3kws_A          161 -SVIFEPLNRKECFYLRQVADAASLCRDI  188 (287)
T ss_dssp             -CEEECCCCTTTCSSCCCHHHHHHHHHHH
T ss_pred             -EEEEEecCcccCcccCCHHHHHHHHHHc
Confidence             49999753    2345666667777765

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=88.77  E-value=9.4  Score=35.04  Aligned_cols=138  Identities=15%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----e--------C
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----D--------T  296 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----D--------T  296 (480)
                      -..+.+...+.|+.+.+.||+.|.++.           . +.       ++.+++.   +++|+--    |        +
T Consensus        18 p~~~~~~~~~~a~~~~~~Ga~~i~~~~-----------~-~~-------i~~i~~~---~~~pv~~~~~~~~~~~~~~i~   75 (223)
T 1y0e_A           18 PLHSSFIMSKMALAAYEGGAVGIRANT-----------K-ED-------ILAIKET---VDLPVIGIVKRDYDHSDVFIT   75 (223)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEES-----------H-HH-------HHHHHHH---CCSCEEEECBCCCTTCCCCBS
T ss_pred             CCCCCccHHHHHHHHHHCCCeeeccCC-----------H-HH-------HHHHHHh---cCCCEEeeeccCCCccccccC
Confidence            355778899999999999999998852           1 22       4444443   3566621    1        1


Q ss_pred             CCHHHHHHHHHcCCCEEecCCCCCCC-----chHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          297 FYSKVASEAVGKGAHIVNDVSAGQLD-----PDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       297 ~~~~v~~aaL~~G~~iINdVsg~~~d-----~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      .+.+.++.++++|++.|.-......+     .++++.+++.  +..+++-     +.+.                    +
T Consensus        76 ~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~-----~~t~--------------------~  130 (223)
T 1y0e_A           76 ATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMAD-----IATV--------------------E  130 (223)
T ss_dssp             CSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEE-----CSSH--------------------H
T ss_pred             CcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEec-----CCCH--------------------H
Confidence            35678889999999977522222112     3677788876  7666541     1111                    1


Q ss_pred             HHHHHHHCCCCCCCEEEec-CCC---CccC-hhHHHHHHHhc-ccCCCcEEE
Q 038230          370 KVRDAELSGIPAWRIIIDP-GLG---FSKK-AEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDP-giG---f~k~-~~~~~~~lr~l-~~~g~Pil~  415 (480)
                      .+.++.+.|++  =|.+-+ |..   +... ...+++.++++ +..++|++.
T Consensus       131 e~~~~~~~G~d--~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia  180 (223)
T 1y0e_A          131 EAKNAARLGFD--YIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA  180 (223)
T ss_dssp             HHHHHHHTTCS--EEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHcCCC--EEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE
Confidence            12346788985  222222 221   1111 34467788887 346889875

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=88.74  E-value=2.8  Score=41.58  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             cCCCCCCC-CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          219 LTPDSFSD-GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       219 ~tpDSFsd-gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      +||  |-+ .|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+-+
T Consensus        20 vTP--f~~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-eEr~~v~~~~v~~~~gr---vpViaGvg~   90 (316)
T 3e96_A           20 ITP--FRKSDGS-IDWHHYKETVDRIVDNGIDVIVPCG-NTSEF-YALSL-EEAKEEVRRTVEYVHGR---ALVVAGIGY   90 (316)
T ss_dssp             CCC--BCTTTCC-BCHHHHHHHHHHHHTTTCCEECTTS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SEEEEEECS
T ss_pred             eCC--ccCCCCC-CCHHHHHHHHHHHHHcCCCEEEeCc-cccCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEEeCc
Confidence            578  865 454 7899999999999999999999997 44332 23454 5666655544 444332   234455554


Q ss_pred             CCHHHHH---HHHHcCCCEEecCCCCCC---Cch----HHHHHHhcCCCEEEEcC
Q 038230          297 FYSKVAS---EAVGKGAHIVNDVSAGQL---DPD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~~v~~---aaL~~G~~iINdVsg~~~---d~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .-.++++   .|-+.|+|-+-.+...-.   +++    .-.++...+.|+++-+.
T Consensus        91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  145 (316)
T 3e96_A           91 ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK  145 (316)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            3333333   334459998876654211   123    33455557899998764

>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}

Probab=88.61  E-value=4.2  Score=40.75  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEEe
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iIN  314 (480)
                      .++.++.|+++|||+|=+.- +   -+..+|+++-.+...|.++.+.+..+..++|+.. .--+...++.-.+.|++.++
T Consensus       195 ~~~~~~~~~~aGad~i~i~D-~---~~~~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~~~~l~~l~~~g~d~~~  270 (359)
T 2inf_A          195 IIVYVKAQIKAGAKAIQIFD-S---WVGALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWHDLPLDVVG  270 (359)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC-T---TGGGSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTCGGGHHHHHTSSCSEEE
T ss_pred             HHHHHHHHHHhCCCEEEEeC-C---ccccCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHHHhCCCEEE
Confidence            44677889999999998763 2   2236787654444455554443321111455443 22224466666678999997


Q ss_pred             cCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCcc
Q 038230          315 DVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSK  394 (480)
Q Consensus       315 dVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k  394 (480)
                       +..   .-.+.++.+. |-.++++-.- .| +.-.   .+    .+++.+..++.++.    |-.....|+-||-|+..
T Consensus       271 -~d~---~~d~~~~~~~-g~~~~l~Gnl-dp-~~l~---~t----~e~I~~~v~~~l~~----~~~~~g~Il~~gcgi~~  332 (359)
T 2inf_A          271 -LDW---RLGIDEARSK-GITKTVQGNL-DP-SILL---AP----WEVIEQKTKEILDQ----GMESDGFIFNLGHGVFP  332 (359)
T ss_dssp             -CCT---TSCHHHHHHT-TCCSEEECCB-CG-GGGG---SC----HHHHHHHHHHHHHH----HTTSSCEEBCBSSCCCT
T ss_pred             -eCC---CCCHHHHHHc-CCCEEEEecC-Ch-HHhc---CC----HHHHHHHHHHHHHh----CCCCCCeEEeCCCCCCC
Confidence             321   2345555555 6555655432 13 2211   11    22333333444443    32113799999999854


Q ss_pred             -ChhHHHHHHHh
Q 038230          395 -KAEHNLDILLG  405 (480)
Q Consensus       395 -~~~~~~~~lr~  405 (480)
                       +..+|+..+-+
T Consensus       333 ~~~~enl~a~ve  344 (359)
T 2inf_A          333 DVSPEVLKKLTA  344 (359)
T ss_dssp             TSCHHHHHHHHH
T ss_pred             CcCHHHHHHHHH
Confidence             45666655443

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=88.53  E-value=5.5  Score=39.34  Aligned_cols=114  Identities=21%  Similarity=0.279  Sum_probs=69.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...++++.++++|+|-|=++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+.
T Consensus        17 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~~~~~~gr---vpviaGvg~~   87 (309)
T 3fkr_A           17 PTT--FADTGD-LDLASQKRAVDFMIDAGSDGLCILA-NFSEQ-FAITD-DERDVLTRTILEHVAGR---VPVIVTTSHY   87 (309)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCSCEEESS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             eCC--CCcCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEecCCc
Confidence            577  876554 7899999999999999999999987 44433 23454 5555555444 333322   1333444444


Q ss_pred             CHHH----HHHHHHcCCCEEecCCCC-----CC-Cch----HHHHHHhcCCCEEEEcC
Q 038230          298 YSKV----ASEAVGKGAHIVNDVSAG-----QL-DPD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~v----~~aaL~~G~~iINdVsg~-----~~-d~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.    ++.|-+.|+|-+--+...     .- +++    .-.++...+.|+++-+.
T Consensus        88 ~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~  145 (309)
T 3fkr_A           88 STQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDA  145 (309)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            4333    234455699988776542     11 123    33455557999998664

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=88.48  E-value=4.7  Score=39.64  Aligned_cols=115  Identities=13%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV-LEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v-i~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++... ++.....   ..+.+.+=+.
T Consensus        13 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---vpviaGvg~~   83 (300)
T 3eb2_A           13 VSP--VDAEGR-VRADVMGRLCDDLIQAGVHGLTPLG-STGEF-AYLGT-AQREAVVRATIEAAQRR---VPVVAGVAST   83 (300)
T ss_dssp             CCC--BCTTSC-BCHHHHHHHHHHHHHTTCSCBBTTS-GGGTG-GGCCH-HHHHHHHHHHHHHHTTS---SCBEEEEEES
T ss_pred             ecc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCc-cccCH-HHHHHHHHHHHHHhCCC---CcEEEeCCCC
Confidence            577  876664 7999999999999999999999887 44433 23554 555555544 4444332   2455666555


Q ss_pred             CHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcCC
Q 038230          298 YSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       298 ~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~~  342 (480)
                      +.+.+    +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+..
T Consensus        84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P  139 (300)
T 3eb2_A           84 SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNP  139 (300)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECc
Confidence            54433    2344459997766654211  1 22    334555578999987753

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=88.47  E-value=4.1  Score=37.99  Aligned_cols=82  Identities=9%  Similarity=0.018  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-E---e--------CCCHHHH
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-V---D--------TFYSKVA  302 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-I---D--------T~~~~v~  302 (480)
                      ...+.|+.+.+.||+.|.++.           +        ..++.+++.   +++|+. +   |        +...+.+
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~~-----------~--------~~i~~i~~~---~~~p~i~~~~~~~~~~~~~i~~~~~~i   94 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRANS-----------V--------RDIKEIQAI---TDLPIIGIIKKDYPPQEPFITATMTEV   94 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEES-----------H--------HHHHHHHTT---CCSCEEEECBCCCTTSCCCBSCSHHHH
T ss_pred             hHHHHHHHHHHCCCcEeecCC-----------H--------HHHHHHHHh---CCCCEEeeEcCCCCccccccCChHHHH
Confidence            577889999999999999862           1        125566665   467772 1   1        2356889


Q ss_pred             HHHHHcCCCEEecCCCCCCC------chHHHHHHhc--CCCEEE
Q 038230          303 SEAVGKGAHIVNDVSAGQLD------PDMYKVVAGL--KVPYVA  338 (480)
Q Consensus       303 ~aaL~~G~~iINdVsg~~~d------~~m~~l~~~~--~~~vVl  338 (480)
                      +.++++|++.|.--.....+      .++++.+++.  +..+++
T Consensus        95 ~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~  138 (234)
T 1yxy_A           95 DQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA  138 (234)
T ss_dssp             HHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE
Confidence            99999999998743322211      3577777776  665554

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=88.37  E-value=8.3  Score=37.47  Aligned_cols=156  Identities=14%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             HHHHHHcCCCEEEeCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-----HHH-HH---HH
Q 038230          240 VRLMISEGADMIDIGA-----QSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-----SKV-AS---EA  305 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~-----eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-----~~v-~~---aa  305 (480)
                      |+-.-++|.|+|=+|.     .-..|...+++-+|-+..    .+.+.+-.  ...+|..|+..     ++. ++   .-
T Consensus        30 A~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h----~~aV~r~~--~~~~vvaD~pfgsy~~~~~a~~~a~rl  103 (264)
T 1m3u_A           30 AKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYH----TAAVRRGA--PNCLLLADLPFMAYATPEQAFENAATV  103 (264)
T ss_dssp             HHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHH----HHHHHHHC--TTSEEEEECCTTSSSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHH----HHHHHhhC--CCCcEEEECCCCCcCCHHHHHHHHHHH
Confidence            3444578999999982     123455567776544443    44444431  14678899765     432 22   45


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      +++|++.|+ +-+...-.+.++.+.+.+.||+. |..=+|++......+.-..-.++..+.+.++...++++|-.   .|
T Consensus       104 ~kaGa~aVk-lEgg~e~~~~I~al~~agipV~g-HiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~---~i  178 (264)
T 1m3u_A          104 MRAGANMVK-IEGGEWLVETVQMLTERAVPVCG-HLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQ---LL  178 (264)
T ss_dssp             HHTTCSEEE-CCCSGGGHHHHHHHHHTTCCEEE-EEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCC---EE
T ss_pred             HHcCCCEEE-ECCcHHHHHHHHHHHHCCCCeEe-eecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCc---EE
Confidence            667999999 54432223445555678899774 54335554322111100000011224555677777899995   55


Q ss_pred             EecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          386 IDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       386 lDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                      +=+++   . .    ++.+++ +.+..|++
T Consensus       179 vlE~v---p-~----~~a~~it~~l~iP~i  200 (264)
T 1m3u_A          179 VLECV---P-V----ELAKRITEALAIPVI  200 (264)
T ss_dssp             EEESC---C-H----HHHHHHHHHCSSCEE
T ss_pred             EEecC---C-H----HHHHHHHHhCCCCEE
Confidence            55554   1 1    234444 34677865

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=88.34  E-value=1.1  Score=42.10  Aligned_cols=151  Identities=16%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCC
Q 038230          235 AAVSQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGA  310 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~  310 (480)
                      +.++.|+.+.+.|||.|-+=..  +..+.   ..       . +.++.+++.   .++|+-+.  -.+++.+++++++|+
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~-------~-~~i~~i~~~---~~ipv~v~ggI~~~~~~~~~l~~Ga   98 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DN-------R-ALIAEVAQA---MDIKVELSGGIRDDDTLAAALATGC   98 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CC-------H-HHHHHHHHH---CSSEEEEESSCCSHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcCC---Ch-------H-HHHHHHHHh---cCCcEEEECCcCCHHHHHHHHHcCC
Confidence            3566788889999999987311  00111   11       1 345555554   37887774  467889999999999


Q ss_pred             CEEecCCCCCCCc-hHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230          311 HIVNDVSAGQLDP-DMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID  387 (480)
Q Consensus       311 ~iINdVsg~~~d~-~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD  387 (480)
                      +.|---+....++ .+.+++++++..+++.-+  .|...+ ..-.... .+        ..+.++.+.+.|+.  -|++=
T Consensus        99 d~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~-~g~~~~~-~~--------~~e~~~~~~~~G~~--~i~~~  166 (244)
T 1vzw_A           99 TRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRG-RGWTRDG-GD--------LYETLDRLNKEGCA--RYVVT  166 (244)
T ss_dssp             SEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECC-SSSCCCC-CB--------HHHHHHHHHHTTCC--CEEEE
T ss_pred             CEEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEE-cCcccCC-CC--------HHHHHHHHHhCCCC--EEEEe
Confidence            9875322211133 366777777755543211  111000 0000000 01        12445566778986  56653


Q ss_pred             ---cCC-CCccChhHHHHHHHhc-ccCCCcEEE
Q 038230          388 ---PGL-GFSKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       388 ---Pgi-Gf~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                         |+. +.+.    +++.++++ +..++|++.
T Consensus       167 ~~~~~~~~~g~----~~~~~~~i~~~~~ipvia  195 (244)
T 1vzw_A          167 DIAKDGTLQGP----NLELLKNVCAATDRPVVA  195 (244)
T ss_dssp             EC-------CC----CHHHHHHHHHTCSSCEEE
T ss_pred             ccCcccccCCC----CHHHHHHHHHhcCCCEEE
Confidence               322 2222    35666666 346889886

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=88.31  E-value=4.9  Score=39.81  Aligned_cols=112  Identities=14%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             cCCCCC-CCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230          219 LTPDSF-SDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       219 ~tpDSF-sdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT  296 (480)
                      +||  | -+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+
T Consensus        20 vTP--F~~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-eEr~~vi~~~~~~~~gr---vpViaGvg~   90 (314)
T 3d0c_A           20 IVP--FLEGTRE-IDWKGLDDNVEFLLQNGIEVIVPNG-NTGEF-YALTI-EEAKQVATRVTELVNGR---ATVVAGIGY   90 (314)
T ss_dssp             CCC--BCTTTCC-BCHHHHHHHHHHHHHTTCSEECTTS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SEEEEEECS
T ss_pred             ecc--ccCCCCC-CCHHHHHHHHHHHHHcCCCEEEECc-ccCCh-hhCCH-HHHHHHHHHHHHHhCCC---CeEEecCCc
Confidence            588  8 44443 6899999999999999999999987 33332 23554 5565555444 333322   123345555


Q ss_pred             CCH-HHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEc
Q 038230          297 FYS-KVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMH  340 (480)
Q Consensus       297 ~~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh  340 (480)
                       +. +++   +.|-+.|+|-+--+...-.   .++++    .++...+.|+++-+
T Consensus        91 -st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn  144 (314)
T 3d0c_A           91 -SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF  144 (314)
T ss_dssp             -SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             -CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence             43 333   3344569998877665311   13333    55666789999876

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=88.26  E-value=5.5  Score=38.94  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--Ee
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VD  295 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--ID  295 (480)
                      +||  |.+.|. .|.+...++++.+++ +|+|-|-++| ||.-+ ...|. +|..++...+.....-    ++||-  +=
T Consensus        12 vTP--f~~dg~-iD~~~l~~lv~~li~~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~g----rvpviaGvg   81 (293)
T 1f6k_A           12 LVS--FNEDGT-INEKGLRQIIRHNIDKMKVDGLYVGG-STGEN-FMLST-EEKKEIFRIAKDEAKD----QIALIAQVG   81 (293)
T ss_dssp             CCC--BCTTSC-BCHHHHHHHHHHHHHTSCCSEEEESS-GGGTG-GGSCH-HHHHHHHHHHHHHHTT----SSEEEEECC
T ss_pred             EcC--CCCCCC-cCHHHHHHHHHHHHhhCCCcEEEeCc-cccch-hhCCH-HHHHHHHHHHHHHhCC----CCeEEEecC
Confidence            688  865554 689999999999999 9999999987 33332 23454 5565555544333321    45554  43


Q ss_pred             CCC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          296 TFY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       296 T~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      +.+ .+++   +.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        82 ~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~  138 (293)
T 1f6k_A           82 SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI  138 (293)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            333 3333   3344569997766654211   23333    455557899998664

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=88.13  E-value=2.8  Score=39.70  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC--Cc-CCCCeEEEeCCCHHHHHHHHHcC
Q 038230          235 AAVSQVRLMISEGAD--MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM--PE-MEGKLVSVDTFYSKVASEAVGKG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAd--iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~--~~-~~~~pISIDT~~~~v~~aaL~~G  309 (480)
                      ..-+..+.+.+.|||  -+||+=...-|+.. ..+        ++++.|++.  .+ .-++-+.+.+.. .-++.+.++|
T Consensus        18 ~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~-~G~--------~~v~~ir~~~~~~~~~dvhLmv~~p~-~~i~~~~~aG   87 (228)
T 3ovp_A           18 NLGAECLRMLDSGADYLHLDVMDGHFVPNIT-FGH--------PVVESLRKQLGQDPFFDMHMMVSKPE-QWVKPMAVAG   87 (228)
T ss_dssp             GHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC-BCH--------HHHHHHHHHHCSSSCEEEEEECSCGG-GGHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCCEEEEEecCCCcCcccc-cCH--------HHHHHHHHhhCCCCcEEEEEEeCCHH-HHHHHHHHcC
Confidence            344455666689999  67777443334432 111        234444433  10 012334443332 3577888899


Q ss_pred             CCEEecCCCCCCC--chHHHHHHhcCCCEEEEc
Q 038230          310 AHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       310 ~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh  340 (480)
                      +++|. +-++..+  .+.+..++++|+.+.+.-
T Consensus        88 ad~it-vH~Ea~~~~~~~i~~i~~~G~k~gval  119 (228)
T 3ovp_A           88 ANQYT-FHLEATENPGALIKDIRENGMKVGLAI  119 (228)
T ss_dssp             CSEEE-EEGGGCSCHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEE-EccCCchhHHHHHHHHHHcCCCEEEEE
Confidence            99987 4333212  357888899998766643

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=88.03  E-value=0.56  Score=45.86  Aligned_cols=78  Identities=10%  Similarity=0.059  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHH-cCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCC-HHHHH
Q 038230          232 SVEAAVSQVRLMIS-EGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFY-SKVAS  303 (480)
Q Consensus       232 ~~e~a~~~A~~~v~-~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~-~~v~~  303 (480)
                      +.++..+.|+.+.+ .|+|.|+|+..+..  ++....  -...+.+..+++.+++.   .++||.+    +..+ .+.++
T Consensus       109 ~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~--g~~~~~~~eii~~v~~~---~~~pv~vk~~~~~~~~~~~a~  183 (311)
T 1ep3_A          109 EEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF--GTDPEVAAALVKACKAV---SKVPLYVKLSPNVTDIVPIAK  183 (311)
T ss_dssp             SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEG--GGCHHHHHHHHHHHHHH---CSSCEEEEECSCSSCSHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhh--cCCHHHHHHHHHHHHHh---cCCCEEEEECCChHHHHHHHH
Confidence            46777777777776 99999999874321  110000  01234566778888765   3677776    5444 34466


Q ss_pred             HHHHcCCCEEe
Q 038230          304 EAVGKGAHIVN  314 (480)
Q Consensus       304 aaL~~G~~iIN  314 (480)
                      .+.++|++.|.
T Consensus       184 ~l~~~G~d~i~  194 (311)
T 1ep3_A          184 AVEAAGADGLT  194 (311)
T ss_dssp             HHHHTTCSEEE
T ss_pred             HHHHcCCCEEE
Confidence            66667777665

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=87.90  E-value=5.6  Score=38.92  Aligned_cols=113  Identities=17%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT  296 (480)
                      +||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+.....    .++||  .+=+
T Consensus        12 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~----gr~pviaGvg~   81 (294)
T 3b4u_A           12 TTP--FKTDGT-VDIDAMIAHARRCLSNGCDSVTLFG-TTGEG-CSVGS-RERQAILSSFIAAGI----APSRIVTGVLV   81 (294)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCSEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHTTC----CGGGEEEEECC
T ss_pred             ECC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhC----CCCcEEEeCCC
Confidence            688  865553 6899999999999999999999987 34433 23454 566665544432221    13454  4544


Q ss_pred             CCH-HH---HHHHHHcCCCEEecCCCCCC----CchHH----HHHHhc---CCCEEEEcC
Q 038230          297 FYS-KV---ASEAVGKGAHIVNDVSAGQL----DPDMY----KVVAGL---KVPYVAMHM  341 (480)
Q Consensus       297 ~~~-~v---~~aaL~~G~~iINdVsg~~~----d~~m~----~l~~~~---~~~vVlmh~  341 (480)
                      .+. ++   ++.|-+.|+|-+--+...-.    +++++    .++...   +.|+++-+.
T Consensus        82 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~  141 (294)
T 3b4u_A           82 DSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI  141 (294)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred             ccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            443 33   33445569997776654211    23333    445556   899998664

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=87.89  E-value=5.4  Score=38.94  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |.+.|  .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=+.
T Consensus        11 vTP--f~~dg--iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~gr---~pvi~Gvg~~   80 (291)
T 3a5f_A           11 ITP--FTNTG--VDFDKLSELIEWHIKSKTDAIIVCG-TTGEA-TTMTE-TERKETIKFVIDKVNKR---IPVIAGTGSN   80 (291)
T ss_dssp             CCC--BCSSS--BCHHHHHHHHHHHHHTTCCEEEESS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             EcC--cCCCC--cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---CcEEEeCCcc
Confidence            688  87666  8999999999999999999999987 33332 23454 5565555544 333322   1333444443


Q ss_pred             C-HHH---HHHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          298 Y-SKV---ASEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~-~~v---~~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      + .++   ++.|-+.|+|-+--+.-.-.   +++++    .++...+.|+++-+.
T Consensus        81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~  135 (291)
T 3a5f_A           81 NTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV  135 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3 333   33445569997766654211   23444    234446789988664

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=87.85  E-value=5.3  Score=38.94  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT  296 (480)
                      +||  |-| | -.|.+...++++.++++|+|-|-++| ||.-+ ...|. +|..++...+.....-    ++||-+  =+
T Consensus        10 vTP--f~d-g-~iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~g----r~pviaGvg~   78 (289)
T 2yxg_A           10 ITP--FKN-K-EVDFDGLEENINFLIENGVSGIVAVG-TTGES-PTLSH-EEHKKVIEKVVDVVNG----RVQVIAGAGS   78 (289)
T ss_dssp             CCC--EET-T-EECHHHHHHHHHHHHHTTCSEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTT----SSEEEEECCC
T ss_pred             ecC--cCC-C-CcCHHHHHHHHHHHHHCCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCC----CCcEEEeCCC
Confidence            588  763 3 36899999999999999999999987 44433 23554 5565555544333221    355544  33


Q ss_pred             CC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          297 FY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ .+++   +.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        79 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~  134 (289)
T 2yxg_A           79 NCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNV  134 (289)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            33 3333   3444569997766654211   13333    455667899998664

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=87.66  E-value=12  Score=37.45  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCHHHHHHHHH-cC
Q 038230          235 AAVSQVRLMISEGADMIDIGAQ-STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYSKVASEAVG-KG  309 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~e-StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~~v~~aaL~-~G  309 (480)
                      +.++.|.++ ..|..-+|+.|. ...|      + +   .+.++.+..++.    ++++.+   .+..++.+..|++ .|
T Consensus       153 ~~l~~a~~~-~~~vvG~dL~g~E~~~~------~-~---~~~~~~~~A~~~----gl~~~~HagE~~~~~~i~~al~~lg  217 (343)
T 3rys_A          153 EVLDQLLAM-HAPIAGIGLDSAEVGNP------P-S---KFERLYQRAAEA----GLRRIAHAGEEGPASYITEALDVLH  217 (343)
T ss_dssp             HHHHHHHHT-TCCCCEEEEESCCTTCC------G-G---GGHHHHHHHHHT----TCEEEEEESSSSCHHHHHHHHHTSC
T ss_pred             HHHHHHHhC-CCCEEEEecCCcccCCC------H-H---HHHHHHHHHHHC----CCeEEEeeCCCCCHHHHHHHHhcCC
Confidence            444555554 578889999763 2222      1 2   234556666665    788777   3457888999998 78


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC----CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR----GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~----g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      ++-|-=-.....+++.++.+++.++++.+++..    |.-.++..                  .-+..+.++|++   +-
T Consensus       218 ~~rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~~~~~------------------hPi~~ll~~Gv~---V~  276 (343)
T 3rys_A          218 VERIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNVRLRAVDKLAD------------------HPLPEMLAIGLN---VC  276 (343)
T ss_dssp             CSEEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHTTSSSCGGG------------------CSHHHHHHTTCC---EE
T ss_pred             cceeeeeeeecCChHHHHHHHhcCCCeeEchhHHHHhCCCCCccc------------------chHHHHHHCCCe---EE
Confidence            887643222233578999999999999998741    21111111                  123455678995   66


Q ss_pred             E---ecCCCCccChhHHHHHHHh
Q 038230          386 I---DPGLGFSKKAEHNLDILLG  405 (480)
Q Consensus       386 l---DPgiGf~k~~~~~~~~lr~  405 (480)
                      |   ||++ |+.+..+.+.+...
T Consensus       277 l~TDdp~~-~~~~l~~E~~~a~~  298 (343)
T 3rys_A          277 VNSDDPAY-FGGYVDDNFEQLVK  298 (343)
T ss_dssp             ECCBSTTT-TTCCHHHHHHHHHH
T ss_pred             EeCCCccc-cCCCHHHHHHHHHH
Confidence            6   6765 44477666766654

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=87.61  E-value=1.8  Score=45.58  Aligned_cols=80  Identities=14%  Similarity=0.132  Sum_probs=54.7

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCH
Q 038230          223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYS  299 (480)
Q Consensus       223 SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~  299 (480)
                      ||.|+.++ +++.+++.++++.+.||++|-|.=  |.-    +....++.++   ++.+++.   .++||++   ||+--
T Consensus       148 ~~~~~~~~-~~e~~~~~a~~l~~~Gad~I~l~D--T~G----~~~P~~v~~l---v~~l~~~---~~~~i~~H~Hnd~Gl  214 (464)
T 2nx9_A          148 CYTTSPVH-NLQTWVDVAQQLAELGVDSIALKD--MAG----ILTPYAAEEL---VSTLKKQ---VDVELHLHCHSTAGL  214 (464)
T ss_dssp             ECCCCTTC-CHHHHHHHHHHHHHTTCSEEEEEE--TTS----CCCHHHHHHH---HHHHHHH---CCSCEEEEECCTTSC
T ss_pred             EeeeCCCC-CHHHHHHHHHHHHHCCCCEEEEcC--CCC----CcCHHHHHHH---HHHHHHh---cCCeEEEEECCCCCh
Confidence            45555555 899999999999999999998861  111    1112455554   4555654   2789998   44544


Q ss_pred             H--HHHHHHHcCCCEEec
Q 038230          300 K--VASEAVGKGAHIVND  315 (480)
Q Consensus       300 ~--v~~aaL~~G~~iINd  315 (480)
                      .  ...+|+++|+++|..
T Consensus       215 AvAN~laAv~AGa~~VD~  232 (464)
T 2nx9_A          215 ADMTLLKAIEAGVDRVDT  232 (464)
T ss_dssp             HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHhCCCEEEE
Confidence            4  457889999999853

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=87.50  E-value=1.6  Score=44.40  Aligned_cols=64  Identities=17%  Similarity=0.310  Sum_probs=47.2

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEEe
Q 038230          237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iIN  314 (480)
                      .++++.++++|||+|.|+.....|           +.+...|+.+++.   .++||.+ ....++.++++.++|+|.|-
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~~-----------~~~~~~i~~i~~~---~~~~Vivg~v~t~e~A~~l~~aGaD~I~  171 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGHS-----------LNIIRTLKEIKSK---MNIDVIVGNVVTEEATKELIENGADGIK  171 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSB-----------HHHHHHHHHHHHH---CCCEEEEEEECSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCCc-----------HHHHHHHHHHHHh---cCCcEEEccCCCHHHHHHHHHcCcCEEE
Confidence            578899999999999998532111           2333446666654   2678776 77889999999999999886

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=87.39  E-value=2.7  Score=42.42  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHHHHcCCC-EEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----EeCCCHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGAD-MIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----VDTFYSKVASE  304 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAd-iIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----IDT~~~~v~~a  304 (480)
                      .++++.++-|+++.+.|++ +||||..+-. ||.  -....+.+.+..+++++++.   .++||.    .|+...+.++.
T Consensus       138 ~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~--~~l~~~~e~l~~il~av~~~---~~~PV~vKi~p~~~~~~~a~~  212 (345)
T 3oix_A          138 MSPEETHTILXMVEASKYQGLVELNLSCPNVPGX--PQIAYDFETTDQILSEVFTY---FTKPLGIKLPPYFDIVHFDQA  212 (345)
T ss_dssp             SSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTC--CCGGGCHHHHHHHHHHHTTT---CCSCEEEEECCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCc--hhhcCCHHHHHHHHHHHHHH---hCCCeEEEECCCCCHHHHHHH
Confidence            4678888889988888987 9999975422 221  12223456677888888876   356654    47544444444


Q ss_pred             HHHc---CCCEEecCC
Q 038230          305 AVGK---GAHIVNDVS  317 (480)
Q Consensus       305 aL~~---G~~iINdVs  317 (480)
                      +-++   |.++||-++
T Consensus       213 ~~~aga~~i~~int~n  228 (345)
T 3oix_A          213 AAIFNXYPLTFVNCIN  228 (345)
T ss_dssp             HHHHTTSCCSEEEECC
T ss_pred             HHHhCCCceEEEEeec
Confidence            4444   456777553

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=87.29  E-value=5  Score=40.37  Aligned_cols=116  Identities=13%  Similarity=0.132  Sum_probs=71.2

Q ss_pred             EEEe--cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230          215 GILN--LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV  292 (480)
Q Consensus       215 GIlN--~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI  292 (480)
                      ||+-  +||  |-+.|. .|.+...+.++.++++|+|-|-++| ||.-+ ...+ .+|..++...  .....   ..+.+
T Consensus        29 Gv~~alvTP--F~~dg~-ID~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls-~eEr~~vi~~--~~~gr---vpVia   97 (344)
T 2hmc_A           29 GVIPALMTP--CRQDRT-PDFDALVRKGKELIADGMSAVVYCG-SMGDW-PLLT-DEQRMEGVER--LVKAG---IPVIV   97 (344)
T ss_dssp             EEEEBCCCC--BCTTSS-BCHHHHHHHHHHHHHTTCCCEEESS-GGGTG-GGSC-HHHHHHHHHH--HHHTT---CCEEE
T ss_pred             ceEEeeeCC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEeCc-cCcCh-hhCC-HHHHHHHHHH--HhCCC---CcEEE
Confidence            5443  577  865554 6899999999999999999999987 33332 2344 4677777766  33322   23444


Q ss_pred             EEeCCC-HHHH---HHHHHcCCCEEecCCCCCC----CchHH----HHHH-hcCCCEEEEcC
Q 038230          293 SVDTFY-SKVA---SEAVGKGAHIVNDVSAGQL----DPDMY----KVVA-GLKVPYVAMHM  341 (480)
Q Consensus       293 SIDT~~-~~v~---~aaL~~G~~iINdVsg~~~----d~~m~----~l~~-~~~~~vVlmh~  341 (480)
                      .+=+.+ .+++   +.|-+.|+|-+--+...-.    +++++    .++. ..+.|+++-+.
T Consensus        98 Gvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~  159 (344)
T 2hmc_A           98 GTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNS  159 (344)
T ss_dssp             ECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEB
T ss_pred             ecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            554444 3333   3344569997776654211    23333    4454 46899998653

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=87.28  E-value=2.5  Score=40.18  Aligned_cols=88  Identities=14%  Similarity=-0.066  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCCCE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGAHI  312 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~~i  312 (480)
                      +.++.|+.+.+.||+.|-+-.. ++.+...-.       ....++.+++.   .++||-+..  .+++-++++++.|++-
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~-~~~~~~~g~-------~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~   99 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSI-DRDGTKSGY-------DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADK   99 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEET-TTSSCSSCC-------CHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSE
T ss_pred             CHHHHHHHHHHCCCCEEEEEec-CcccCCCcc-------cHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence            4677889999999999988321 111111000       12344556655   478888854  3457788999999997


Q ss_pred             EecCCCCC-C--Cc-hHHHHHHhcC
Q 038230          313 VNDVSAGQ-L--DP-DMYKVVAGLK  333 (480)
Q Consensus       313 INdVsg~~-~--d~-~m~~l~~~~~  333 (480)
                      +---+... .  ++ .+.++++.++
T Consensus       100 v~lg~~~~~~~~~~~~~~~~~~~~g  124 (266)
T 2w6r_A          100 ALAASVFHFREIDMRELKEYLKKHG  124 (266)
T ss_dssp             EECCCCC------CHHHHHHCC---
T ss_pred             hhhhHHHHhCCCCHHHHHHHHHHcC
Confidence            65444432 1  33 3555555565

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=87.14  E-value=6  Score=39.19  Aligned_cols=136  Identities=16%  Similarity=0.211  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA  310 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~  310 (480)
                      .+.+++++.+++..+.|+.-|-+.+. ..|..     ....+++..+++.+++... ..+-++.+..+.+.+++-.++|+
T Consensus        91 ls~eei~~~~~~~~~~G~~~i~l~gG-e~p~~-----~~~~~~~~~l~~~ik~~~~-i~i~~s~g~~~~e~l~~L~~aG~  163 (350)
T 3t7v_A           91 LTMEEIKETCKTLKGAGFHMVDLTMG-EDPYY-----YEDPNRFVELVQIVKEELG-LPIMISPGLMDNATLLKAREKGA  163 (350)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEEEEEEC-CCHHH-----HHSTHHHHHHHHHHHHHHC-SCEEEECSSCCHHHHHHHHHTTE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeeC-CCCcc-----ccCHHHHHHHHHHHHhhcC-ceEEEeCCCCCHHHHHHHHHcCC
Confidence            69999999999999999998887431 11210     0124556667777775321 13334556678888888888898


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      +.++ ++....++++++.+..           +  .+        +        +...+.++.+.++|+.   +-.+-.+
T Consensus       164 ~~i~-i~lEt~~~~~~~~i~~-----------~--~~--------~--------~~~l~~i~~a~~~Gi~---v~~~~i~  210 (350)
T 3t7v_A          164 NFLA-LYQETYDTELYRKLRV-----------G--QS--------F--------DGRVNARRFAKQQGYC---VEDGILT  210 (350)
T ss_dssp             EEEE-CCCBCSCHHHHHHHST-----------T--CC--------H--------HHHHHHHHHHHHHTCE---EEEEEEE
T ss_pred             CEEE-EeeecCCHHHHHHhCC-----------C--CC--------H--------HHHHHHHHHHHHcCCe---EccceEe
Confidence            8776 5545445676655421           0  00        1        2233567788889994   7777667


Q ss_pred             CCccChhHHHHHHHhc
Q 038230          391 GFSKKAEHNLDILLGL  406 (480)
Q Consensus       391 Gf~k~~~~~~~~lr~l  406 (480)
                      |++.+.++-.+.++.+
T Consensus       211 Glget~e~~~~~l~~l  226 (350)
T 3t7v_A          211 GVGNDIESTILSLRGM  226 (350)
T ss_dssp             SSSCCHHHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHHHH
Confidence            7777776655555554

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=87.01  E-value=5.6  Score=38.88  Aligned_cols=113  Identities=18%  Similarity=0.245  Sum_probs=69.2

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.  -.|.+...++++.++++|+|-|=++| ||.-+ ...+. +|..++.. +++.....   ..+.+.+=+.
T Consensus        12 vTP--f~~d--~iD~~~l~~lv~~li~~Gv~gl~v~G-ttGE~-~~Lt~-~Er~~v~~~~~~~~~gr---vpviaGvg~~   81 (292)
T 3daq_A           12 TTP--FTNN--KVNLEALKAHVNFLLENNAQAIIVNG-TTAES-PTLTT-DEKELILKTVIDLVDKR---VPVIAGTGTN   81 (292)
T ss_dssp             CCC--EETT--EECHHHHHHHHHHHHHTTCCEEEESS-GGGTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             ecC--cCCC--CcCHHHHHHHHHHHHHcCCCEEEECc-ccccc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEeCCcc
Confidence            577  7655  58999999999999999999999987 34332 23454 55555554 44444332   2344555444


Q ss_pred             CHHHH----HHHHHcCCCEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          298 YSKVA----SEAVGKGAHIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~v~----~aaL~~G~~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+    +.|-+.|+|-+--+...-.  . ++    .-.++...+.|+++-+.
T Consensus        82 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~  136 (292)
T 3daq_A           82 DTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNV  136 (292)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             cHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence            44332    2344459997776654211  1 23    33444556999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=86.93  E-value=0.63  Score=50.78  Aligned_cols=105  Identities=14%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS---TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eS---trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      ++|+.|.++|  .+.+++++.|+.+.+.|+|+|++++..   ..|....-....   ...+.++.+++.   .++||..-
T Consensus       215 ls~~~~~~~g--~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~---~~iPvi~~  286 (671)
T 1ps9_A          215 LSMLDLVEDG--GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRG---AFSWVTRKLKGH---VSLPLVTT  286 (671)
T ss_dssp             EEEECCSTTC--CCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTT---TTHHHHHHHTTS---CSSCEEEC
T ss_pred             ECccccCCCC--CCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcc---hHHHHHHHHHHh---cCceEEEe
Confidence            3455555665  478899999999999999999997421   112100000000   112345667765   47787764


Q ss_pred             C--CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          296 T--FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       296 T--~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      -  ++++.++++|+.| +|+|.=.++.-.+|.+..-+++
T Consensus       287 Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~  325 (671)
T 1ps9_A          287 NRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQS  325 (671)
T ss_dssp             SSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHT
T ss_pred             CCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHHc
Confidence            3  5899999999998 9999866665456777666554

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=86.91  E-value=3.2  Score=38.82  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHcCCc-CCCCeEEEeCCCHHHHHHHHHcC
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERLIPVLEAVLTMPE-MEGKLVSVDTFYSKVASEAVGKG  309 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl~~vi~~l~~~~~-~~~~pISIDT~~~~v~~aaL~~G  309 (480)
                      .....+.++.+.+.|||+|-++..  +..|+.. ...        +.++.|++... ..++.+.++- ..+-++.++++|
T Consensus        18 ~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~-~~~--------~~~~~lr~~~~~~~~v~lmv~d-~~~~i~~~~~ag   87 (228)
T 1h1y_A           18 FANLAAEADRMVRLGADWLHMDIMDGHFVPNLT-IGA--------PVIQSLRKHTKAYLDCHLMVTN-PSDYVEPLAKAG   87 (228)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBC-BCH--------HHHHHHHTTCCSEEEEEEESSC-GGGGHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEecCCcCcchh-hCH--------HHHHHHHhhcCCcEEEEEEecC-HHHHHHHHHHcC
Confidence            344556677778899998655421  2223321 111        33455555421 0134455532 233588888899


Q ss_pred             CCEE--ecCCCCCCC-chHHHHHHhcCCCEEEEc
Q 038230          310 AHIV--NDVSAGQLD-PDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       310 ~~iI--NdVsg~~~d-~~m~~l~~~~~~~vVlmh  340 (480)
                      ++.|  -+-... .. .+.++.++++|..+.+.-
T Consensus        88 ad~v~vH~~~~~-~~~~~~~~~i~~~g~~igv~~  120 (228)
T 1h1y_A           88 ASGFTFHIEVSR-DNWQELIQSIKAKGMRPGVSL  120 (228)
T ss_dssp             CSEEEEEGGGCT-TTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEECCCCcc-cHHHHHHHHHHHcCCCEEEEE
Confidence            9988  433221 13 455778888888777544

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=86.88  E-value=0.65  Score=47.14  Aligned_cols=107  Identities=18%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--
Q 038230          220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--  296 (480)
Q Consensus       220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--  296 (480)
                      +|+-|.+||. .+.+++++.|+.+.+.|+|+|++-.....+... +..+...    .+.++.+++.   .++||..--  
T Consensus       233 s~~~~~~~G~-~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~----~~~~~~ir~~---~~iPVi~~GgI  304 (363)
T 3l5l_A          233 GVLEYDGRDE-QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFM----GPIAERVRRE---AKLPVTSAWGF  304 (363)
T ss_dssp             EEECSSSCHH-HHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTT----HHHHHHHHHH---HTCCEEECSST
T ss_pred             cchhcCCCCC-CCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchh----HHHHHHHHHH---cCCcEEEeCCC
Confidence            4566777763 467899999999999999999996532222110 0011001    1234444543   256666543  


Q ss_pred             CCHHHHHHHHHcC-CCEEecCCCCCCCchHH-HHHHhcCC
Q 038230          297 FYSKVASEAVGKG-AHIVNDVSAGQLDPDMY-KVVAGLKV  334 (480)
Q Consensus       297 ~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~-~l~~~~~~  334 (480)
                      ++++.++++|+.| +|+|-=-++.-.+|.+. ++++++++
T Consensus       305 ~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~~lg~  344 (363)
T 3l5l_A          305 GTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGV  344 (363)
T ss_dssp             TSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHHHHcCC
Confidence            4799999999998 99986444433466655 44445653

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=86.75  E-value=5.8  Score=39.11  Aligned_cols=114  Identities=20%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHcCCcCCCCeEEEeC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE-AVLTMPEMEGKLVSVDT  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~-~l~~~~~~~~~pISIDT  296 (480)
                      -+||  |.| | -.|.+...+.++.++++|++-|-++| ||.-+ ...+. +|..++...+. .....   ..+...+=+
T Consensus        21 ~vTP--f~d-g-~iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-eEr~~vi~~~~~~~~gr---vpViaGvg~   90 (306)
T 1o5k_A           21 IVTP--FKN-G-ELDLESYERLVRYQLENGVNALIVLG-TTGES-PTVNE-DEREKLVSRTLEIVDGK---IPVIVGAGT   90 (306)
T ss_dssp             CCCC--EET-T-EECHHHHHHHHHHHHHTTCCEEEESS-GGGTG-GGCCH-HHHHHHHHHHHHHHTTS---SCEEEECCC
T ss_pred             eecC--cCC-C-CcCHHHHHHHHHHHHHcCCCEEEeCc-cccch-hhCCH-HHHHHHHHHHHHHhCCC---CeEEEcCCC
Confidence            3688  763 3 36899999999999999999999987 33332 23554 55665555443 33322   133344444


Q ss_pred             CC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          297 FY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ .+++   +.|-+.|+|-+--+...-.   .++++    .++...+.|+++-+.
T Consensus        91 ~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  146 (306)
T 1o5k_A           91 NSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV  146 (306)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             ccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            34 3333   3344569997766654211   13333    455557899998664

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=86.75  E-value=5.8  Score=38.77  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=68.8

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT  296 (480)
                      +||  |.| | -.|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+.....-    .+||-  +=+
T Consensus        10 vTP--f~d-g-~iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~-~~Ls~-~Er~~v~~~~~~~~~g----rvpviaGvg~   78 (294)
T 2ehh_A           10 ITP--FKE-G-EVDYEALGNLIEFHVDNGTDAILVCG-TTGES-PTLTF-EEHEKVIEFAVKRAAG----RIKVIAGTGG   78 (294)
T ss_dssp             CCC--EET-T-EECHHHHHHHHHHHHTTTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTT----SSEEEEECCC
T ss_pred             ecC--cCC-C-CcCHHHHHHHHHHHHHCCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCC----CCcEEEecCC
Confidence            688  764 3 36899999999999999999999987 44433 23554 5565555444333221    35554  433


Q ss_pred             CC-HHHH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhcCCCEEEEcC
Q 038230          297 FY-SKVA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~-~~v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ .+++   +.|-+.|+|-+--+...-.   +++++    .++...+.|+++-+.
T Consensus        79 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  134 (294)
T 2ehh_A           79 NATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNI  134 (294)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            33 3333   4445569997766654211   13333    455567899998664

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=86.62  E-value=4.1  Score=40.97  Aligned_cols=97  Identities=24%  Similarity=0.299  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCC---C--CCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQ---S--TRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASE  304 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~e---S--trP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~a  304 (480)
                      .+.+++.+.++++++.|++.|-+-+.   .  +.|. ...++ .+++++   +++..++.    ++++.+=....+.++.
T Consensus       172 ~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~-~e~l~~---~~~~A~~~----g~~v~~H~~~~~~i~~  243 (426)
T 2r8c_A          172 DGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYS-EDEIRA---IVAEAQGR----GTYVLAHAYTPAAIAR  243 (426)
T ss_dssp             CSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSC-HHHHHH---HHHHHHHT----TCCEEEEECSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCC-HHHHHH---HHHHHHHc----CCEEEEEeCChHHHHH
Confidence            46788999999999999998887432   1  1121 12333 455554   45666665    8999999999999999


Q ss_pred             HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      ++++|++.|-=...  .+++.++.+++.++.++
T Consensus       244 al~~G~~~i~H~~~--~~~~~~~~~~~~gv~~~  274 (426)
T 2r8c_A          244 AVRCGVRTIEHGNL--IDDETARLVAEHGAYVV  274 (426)
T ss_dssp             HHHTTCSEEEECTT--CCHHHHHHHHHTTCEEE
T ss_pred             HHHcCCCEEecCCc--CCHHHHHHHHHcCCeEe
Confidence            99999987754432  36888999999998875

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=86.59  E-value=7.1  Score=38.57  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEE--E
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVS--V  294 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pIS--I  294 (480)
                      =+||  |-+.|. .|.+...+.++.++++|+|-|=++| ||.-+ ...+. +|..++...+ +.. .     ++||-  +
T Consensus        16 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Lt~-~Er~~v~~~~v~~~-g-----rvpViaGv   83 (313)
T 3dz1_A           16 APTP--FHDDGK-IDDVSIDRLTDFYAEVGCEGVTVLG-ILGEA-PKLDA-AEAEAVATRFIKRA-K-----SMQVIVGV   83 (313)
T ss_dssp             CCCC--BCTTSC-BCHHHHHHHHHHHHHTTCSEEEEST-GGGTG-GGSCH-HHHHHHHHHHHHHC-T-----TSEEEEEC
T ss_pred             eeCC--CCCCCC-cCHHHHHHHHHHHHHCCCCEEEeCc-cCcCh-hhCCH-HHHHHHHHHHHHHc-C-----CCcEEEec
Confidence            3577  866554 7899999999999999999999987 44433 23454 5566555443 333 2     45544  4


Q ss_pred             eCCCHHH-H---HHHHHcCCCEEecCCCCCC--Cch----HHHHHHhcC--CCEEEEcC
Q 038230          295 DTFYSKV-A---SEAVGKGAHIVNDVSAGQL--DPD----MYKVVAGLK--VPYVAMHM  341 (480)
Q Consensus       295 DT~~~~v-~---~aaL~~G~~iINdVsg~~~--d~~----m~~l~~~~~--~~vVlmh~  341 (480)
                      =+.+.+. +   +.|-+.|+|-+--+.....  +++    .-.++...+  .|+++-+.
T Consensus        84 g~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~  142 (313)
T 3dz1_A           84 SAPGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDY  142 (313)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            3333332 2   3444459997776654321  122    334444567  99998664

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=86.51  E-value=3.8  Score=40.89  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCC-----------C--CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQS-----------T--RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eS-----------t--rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      ++..+.|+...++|.|.|+|++.-           +  |...-.-+.+...+.+..+++++++..   +.||+|.
T Consensus       144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v---~~pv~vr  215 (338)
T 1z41_A          144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVR  215 (338)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc---CCcEEEE
Confidence            344567788889999999998631           1  221112345667788889999998763   6676665

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=86.36  E-value=18  Score=36.65  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHHHHHH--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKVASEA--  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v~~aa--  305 (480)
                      .++++..+.|+++++.|.+.+.+....        +.+++++++.    ++++... .+++|.||.   ++++.+.+.  
T Consensus       150 ~~~e~~~~~a~~~~~~G~~~iKiKvG~--------~~~~d~~~v~----avR~a~g-~d~~l~vDan~~~~~~~A~~~~~  216 (389)
T 3ozy_A          150 LTPDQAADELAGWVEQGFTAAKLKVGR--------APRKDAANLR----AMRQRVG-ADVEILVDANQSLGRHDALAMLR  216 (389)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEECCS--------CHHHHHHHHH----HHHHHHC-TTSEEEEECTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEeeccCC--------CHHHHHHHHH----HHHHHcC-CCceEEEECCCCcCHHHHHHHHH
Confidence            578999999999999999999987421        4566677654    4443211 378999995   455544333  


Q ss_pred             -HH-cCCCEEecCCCCCCC-chHHHHH-HhcCCCEEE
Q 038230          306 -VG-KGAHIVNDVSAGQLD-PDMYKVV-AGLKVPYVA  338 (480)
Q Consensus       306 -L~-~G~~iINdVsg~~~d-~~m~~l~-~~~~~~vVl  338 (480)
                       |+ .|..+|-.-.... + +.+..+. +..++|++.
T Consensus       217 ~l~~~~i~~iEqP~~~~-d~~~~~~l~~~~~~iPIa~  252 (389)
T 3ozy_A          217 ILDEAGCYWFEEPLSID-DIEGHRILRAQGTPVRIAT  252 (389)
T ss_dssp             HHHHTTCSEEESCSCTT-CHHHHHHHHTTCCSSEEEE
T ss_pred             HHHhcCCCEEECCCCcc-cHHHHHHHHhcCCCCCEEe
Confidence             32 4899997654322 3 4566676 667888776

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=86.36  E-value=13  Score=36.70  Aligned_cols=131  Identities=11%  Similarity=0.197  Sum_probs=76.0

Q ss_pred             HHHHHHcCC-CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-----HHHHHHHHHcCCCEE
Q 038230          240 VRLMISEGA-DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-----SKVASEAVGKGAHIV  313 (480)
Q Consensus       240 A~~~v~~GA-diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-----~~v~~aaL~~G~~iI  313 (480)
                      +....++|+ .+|-.+.         ++. +++...   ++.+++.   ++.|+.+.-+-     .+.++.++++|++.|
T Consensus        29 a~av~~aG~lG~i~~~~---------~~~-~~~~~~---i~~i~~~---~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V   92 (332)
T 2z6i_A           29 AGAVSKAGGLGIIGGGN---------APK-EVVKAN---IDKIKSL---TDKPFGVNIMLLSPFVEDIVDLVIEEGVKVV   92 (332)
T ss_dssp             HHHHHHHTSBEEEECTT---------CCH-HHHHHH---HHHHHHH---CCSCEEEEECTTSTTHHHHHHHHHHTTCSEE
T ss_pred             HHHHHhCCCcEEeCCCC---------CCH-HHHHHH---HHHHHHh---cCCCEEEEecCCCCCHHHHHHHHHHCCCCEE
Confidence            344556687 6664432         233 333333   3444433   24566665443     677888999999998


Q ss_pred             ecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC-CCC
Q 038230          314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG-LGF  392 (480)
Q Consensus       314 NdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg-iGf  392 (480)
                      - +.++. ..++++.+++++.++++--.     +                    .+.+..+.+.|++  -|+++.. .|.
T Consensus        93 ~-~~~g~-p~~~i~~l~~~g~~v~~~v~-----~--------------------~~~a~~~~~~GaD--~i~v~g~~~GG  143 (332)
T 2z6i_A           93 T-TGAGN-PSKYMERFHEAGIIVIPVVP-----S--------------------VALAKRMEKIGAD--AVIAEGMEAGG  143 (332)
T ss_dssp             E-ECSSC-GGGTHHHHHHTTCEEEEEES-----S--------------------HHHHHHHHHTTCS--CEEEECTTSSE
T ss_pred             E-ECCCC-hHHHHHHHHHcCCeEEEEeC-----C--------------------HHHHHHHHHcCCC--EEEEECCCCCC
Confidence            6 44432 36788888888887775221     0                    0223456678976  7999852 121


Q ss_pred             ccChhHHHHHHHhc-ccCCCcEEE
Q 038230          393 SKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       393 ~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                      ......++++++++ +..++|++.
T Consensus       144 ~~g~~~~~~ll~~i~~~~~iPVia  167 (332)
T 2z6i_A          144 HIGKLTTMTLVRQVATAISIPVIA  167 (332)
T ss_dssp             ECCSSCHHHHHHHHHHHCSSCEEE
T ss_pred             CCCCccHHHHHHHHHHhcCCCEEE
Confidence            11123456777777 356889876

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=86.31  E-value=1.9  Score=43.04  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--  295 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--  295 (480)
                      =++|+.|..||  .+.+++++.|+.+.+.|+|+|++......+...+..+...+    +.++.+++.   .++||..-  
T Consensus       215 ris~~~~~~~g--~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~----~~~~~ir~~---~~iPVi~~Gg  285 (338)
T 1z41_A          215 RVSASDYTDKG--LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQV----SFAEKIREQ---ADMATGAVGM  285 (338)
T ss_dssp             EEECCCCSTTS--CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTH----HHHHHHHHH---HCCEEEECSS
T ss_pred             EecCcccCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchH----HHHHHHHHH---CCCCEEEECC
Confidence            35677777766  46789999999999999999999753211100011111111    233444443   26777663  


Q ss_pred             CCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          296 TFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       296 T~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      -++++.++++|+.| +|+|-=-++.-.+|.+..-+++
T Consensus       286 i~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~  322 (338)
T 1z41_A          286 ITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAK  322 (338)
T ss_dssp             CCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHc
Confidence            35799999999998 9999755554446766655443

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=86.27  E-value=3.3  Score=48.44  Aligned_cols=191  Identities=15%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCE--EEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-Ee--------C-C
Q 038230          230 FQSVEAAVSQVRLMISEGADM--IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VD--------T-F  297 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdi--IDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-ID--------T-~  297 (480)
                      .++.++-++.|+.+.+.|.++  |+++|..+.|.+-....+.+|+++..+.+.+.      +.++. +.        | +
T Consensus       569 ~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~------~~~~~~l~R~~n~vg~~~~  642 (1165)
T 2qf7_A          569 RMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAP------NLLLQMLLRGANGVGYTNY  642 (1165)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCT------TSEEEEEEETTTBTCSSCC
T ss_pred             cCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHch------hhHHHHHhccccccccccC
Confidence            378899999999999998887  99976666542100001245777766655543      23333 21        1 1


Q ss_pred             ----CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCC--CCCCccccccccchhhHHHHHHHH
Q 038230          298 ----YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMR--GDPSTMQNEENLQYDDVCKQVASE  366 (480)
Q Consensus       298 ----~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~--g~p~~~~~~~~~~~~~v~~ev~~~  366 (480)
                          ..+-+++|+++|++++.=..+.+.-   ....+.+++.|..+.  ++...  +.|...    .  + +     .++
T Consensus       643 ~~~~~~~~i~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~----~--~-~-----~~~  710 (1165)
T 2qf7_A          643 PDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARP----K--Y-D-----LKY  710 (1165)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSG----G--G-C-----HHH
T ss_pred             CchhHHHHHHHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCC----C--C-C-----HHH
Confidence                1245788999999986644443321   345677778885443  23221  222110    0  0 1     266


Q ss_pred             HHHHHHHHHHCCCCCCCE-EEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230          367 LYSKVRDAELSGIPAWRI-IIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASIT  444 (480)
Q Consensus       367 l~~~i~~a~~~Gi~~~~I-ilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~  444 (480)
                      +.+.++.+.++|..  .| |-|- .|... +.+..++++.+ +..+.|+=+ |.              .+-.+...|-+.
T Consensus       711 ~~~~~~~~~~~Ga~--~i~l~DT-~G~~~-P~~~~~lv~~l~~~~~~~i~~-H~--------------Hnd~GlAvAn~l  771 (1165)
T 2qf7_A          711 YTNLAVELEKAGAH--IIAVKDM-AGLLK-PAAAKVLFKALREATGLPIHF-HT--------------HDTSGIAAATVL  771 (1165)
T ss_dssp             HHHHHHHHHHTTCS--EEEEEET-TCCCC-HHHHHHHHHHHHHHCSSCEEE-EE--------------CBTTSCHHHHHH
T ss_pred             HHHHHHHHHHcCCC--EEEEeCc-cCCcC-HHHHHHHHHHHHHhcCCeEEE-EE--------------CCCCCHHHHHHH
Confidence            77888889999986  44 3343 34333 34445666666 234666533 11              111123344456


Q ss_pred             HHHHcCCcEEEcC
Q 038230          445 AGVLGGANIVRVH  457 (480)
Q Consensus       445 ~a~~~Ga~IlRvH  457 (480)
                      .|++.||+++.+.
T Consensus       772 aAv~aGa~~vd~t  784 (1165)
T 2qf7_A          772 AAVEAGVDAVDAA  784 (1165)
T ss_dssp             HHHHTTCSEEEEB
T ss_pred             HHHHhCCCEEEec
Confidence            6788888888754

>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}

Probab=86.18  E-value=8.9  Score=38.12  Aligned_cols=148  Identities=10%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC----CCeEEE-eCCCHHHHHHHHHcCC
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME----GKLVSV-DTFYSKVASEAVGKGA  310 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~----~~pISI-DT~~~~v~~aaL~~G~  310 (480)
                      .++.++.|+++|||+|-+. .|   -+..+|++.=.+.+.|-++.+.+..+..    ++|+.. ..-....++.-.+.|+
T Consensus       189 ~~~~~~~~~~aGad~i~i~-d~---~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~~~~l~~l~~~g~  264 (354)
T 3cyv_A          189 VTLYLNAQIKAGAQAVMIF-DT---WGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGC  264 (354)
T ss_dssp             HHHHHHHHHHTTCSEEEEE-CT---TGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTTTTTHHHHHTTSC
T ss_pred             HHHHHHHHHHhCCCEEEEe-CC---ccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCHHHHHHHHHhcCC
Confidence            4567889999999999885 33   2346887665555666666655432211    255433 2222345666667899


Q ss_pred             CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      +++| +..   .-.+.++.+.++-.++++-.- .|....    .+    .+++.+..++.++.   .|- ....|+-||.
T Consensus       265 d~i~-~d~---~~dl~~~~~~~g~~~~l~Gn~-dp~~l~----~t----~e~i~~~v~~~l~~---~g~-~~g~I~~~g~  327 (354)
T 3cyv_A          265 DALG-LDW---TTDIADARRRVGNKVALQGNM-DPSMLY----AP----PARIEEEVATILAG---FGH-GEGHVFNLGH  327 (354)
T ss_dssp             SEEE-CCT---TSCHHHHHHHHTTTSEEECCB-CGGGGG----SC----HHHHHHHHHHHHTT---TTT-SSCEEBCBSS
T ss_pred             CEEE-eCC---CCCHHHHHHHhCCCeEEEecC-ChHHhC----CC----HHHHHHHHHHHHHH---hCC-CCCeEEecCC
Confidence            9999 432   234556666677666665432 121111    11    22333333333332   253 2479999998


Q ss_pred             CCcc-ChhHHHHHHH
Q 038230          391 GFSK-KAEHNLDILL  404 (480)
Q Consensus       391 Gf~k-~~~~~~~~lr  404 (480)
                      |... +..+|++.+-
T Consensus       328 gi~~~~p~env~a~v  342 (354)
T 3cyv_A          328 GIHQDVPPEHAGVFV  342 (354)
T ss_dssp             CCCTTSCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHH
Confidence            8743 3455655443

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=86.17  E-value=5.7  Score=37.83  Aligned_cols=74  Identities=7%  Similarity=-0.011  Sum_probs=38.0

Q ss_pred             hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHH
Q 038230          324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDI  402 (480)
Q Consensus       324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~  402 (480)
                      +.++++++.|+++|++|....+..      ...++..+...+.+.+..+.|.+.||   +|.+-|.-+ |..+..+..++
T Consensus       112 ~~i~~A~~lG~~~v~~~~~~~~~~------~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lEn~~~~~~~~~~~~~~l  182 (295)
T 3cqj_A          112 KAIQFAQDVGIRVIQLAGYDVYYQ------EANNETRRRFRDGLKESVEMASRAQV---TLAMEIMDYPLMNSISKALGY  182 (295)
T ss_dssp             HHHHHHHHHTCCEEEECCCSCSSS------CCCHHHHHHHHHHHHHHHHHHHHHTC---EEEEECCSSGGGCSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECCCCCCcC------cCHHHHHHHHHHHHHHHHHHHHHhCC---EEEEeeCCCcccCCHHHHHHH
Confidence            456666777777776662211000      01123344455566666666666777   366666433 24444554555


Q ss_pred             HHhc
Q 038230          403 LLGL  406 (480)
Q Consensus       403 lr~l  406 (480)
                      ++.+
T Consensus       183 ~~~v  186 (295)
T 3cqj_A          183 AHYL  186 (295)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=86.16  E-value=25  Score=35.13  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKVASEAVG  307 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v~~aaL~  307 (480)
                      .++++..+.|++++++|-+.|.|-...  +     +.++..+++    +++++... .+++|.||.   ++++.+.+.++
T Consensus       145 ~~~e~~~~~a~~~~~~Gf~~iKik~g~--~-----~~~~~~e~v----~avr~a~G-~d~~l~vDan~~~~~~~a~~~~~  212 (371)
T 2ovl_A          145 LPVADLKTQADRFLAGGFRAIKMKVGR--P-----DLKEDVDRV----SALREHLG-DSFPLMVDANMKWTVDGAIRAAR  212 (371)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCEEEECCC--S-----SHHHHHHHH----HHHHHHHC-TTSCEEEECTTCSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCC--C-----CHHHHHHHH----HHHHHHhC-CCCeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999999986421  1     344455544    44444321 278999995   35554433332


Q ss_pred             ----cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          308 ----KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       308 ----~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                          +|.++|-+-.....-+.+..+.+..++|++.-
T Consensus       213 ~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI~~d  248 (371)
T 2ovl_A          213 ALAPFDLHWIEEPTIPDDLVGNARIVRESGHTIAGG  248 (371)
T ss_dssp             HHGGGCCSEEECCSCTTCHHHHHHHHHHHCSCEEEC
T ss_pred             HHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEeC
Confidence                49999976543221256777777788998873

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=85.95  E-value=2.6  Score=39.12  Aligned_cols=90  Identities=19%  Similarity=0.078  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCCC
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGAH  311 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~~  311 (480)
                      ++.++.++.+.+.|||.|-+-... ..+   -.    .......++.+++.   .++|+.+.  -.+++.+++++++|++
T Consensus        33 ~~~~~~a~~~~~~G~d~i~v~~~~-~~~---~~----~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad  101 (253)
T 1h5y_A           33 GDPVEMAVRYEEEGADEIAILDIT-AAP---EG----RATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGAD  101 (253)
T ss_dssp             ECHHHHHHHHHHTTCSCEEEEECC-CCT---TT----HHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCS
T ss_pred             ccHHHHHHHHHHcCCCEEEEEeCC-ccc---cC----CcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCC
Confidence            457888999999999955442111 100   01    11233456666654   36777664  4678889999999999


Q ss_pred             EEecCCCCCCCch-HHHHHHhcCC
Q 038230          312 IVNDVSAGQLDPD-MYKVVAGLKV  334 (480)
Q Consensus       312 iINdVsg~~~d~~-m~~l~~~~~~  334 (480)
                      .|-=-+....+++ +.+++++++.
T Consensus       102 ~V~i~~~~~~~~~~~~~~~~~~g~  125 (253)
T 1h5y_A          102 KVSVNTAAVRNPQLVALLAREFGS  125 (253)
T ss_dssp             EEEESHHHHHCTHHHHHHHHHHCG
T ss_pred             EEEEChHHhhCcHHHHHHHHHcCC
Confidence            7752221111344 5566777774

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=85.79  E-value=2.1  Score=43.57  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i  312 (480)
                      +...++++..+++|+|+|.|...-   +.   +  +   .+...|+.+++..  .++||.. .-..++.++.+.++|+|.
T Consensus        99 ~~~~e~~~~a~~aGvdvI~id~a~---G~---~--~---~~~e~I~~ir~~~--~~~~Vi~G~V~T~e~A~~a~~aGaD~  165 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCVDVAH---AH---A--K---YVGKTLKSLRQLL--GSRCIMAGNVATYAGADYLASCGADI  165 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSC---CS---S--H---HHHHHHHHHHHHH--TTCEEEEEEECSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCC---CC---c--H---hHHHHHHHHHHhc--CCCeEEEcCcCCHHHHHHHHHcCCCE
Confidence            457788999999999999996421   11   1  1   2334456666542  2678888 778899999999999998


Q ss_pred             Ee
Q 038230          313 VN  314 (480)
Q Consensus       313 IN  314 (480)
                      |-
T Consensus       166 I~  167 (361)
T 3r2g_A          166 IK  167 (361)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=85.78  E-value=6.1  Score=39.90  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHHHHHH--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKVASEA--  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v~~aa--  305 (480)
                      .++++..+.|++++++|-+.|.|....        +    .+....+|+++++...  +++|.||.   ++++.+.+.  
T Consensus       146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~--------~----~~~~~e~v~avr~a~g--d~~l~vD~n~~~~~~~a~~~~~  211 (384)
T 2pgw_A          146 ETAEELARDAAVGHAQGERVFYLKVGR--------G----EKLDLEITAAVRGEIG--DARLRLDANEGWSVHDAINMCR  211 (384)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEECCS--------C----HHHHHHHHHHHHTTST--TCEEEEECTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECcCC--------C----HHHHHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHH
Confidence            467888999999999999999996421        2    2333455778887743  68999994   455544333  


Q ss_pred             -HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          306 -VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       306 -L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                       |+ +|.++|.+-.....-+.+..+.+..++||+.
T Consensus       212 ~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPI~~  246 (384)
T 2pgw_A          212 KLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVA  246 (384)
T ss_dssp             HHGGGCCSEEECCSCTTCHHHHHHHHHHCSSCEEE
T ss_pred             HHHhcCCCEEeCCCChhhHHHHHHHHhhCCCCEEE
Confidence             32 4999998765332125667777778899886

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=85.73  E-value=3.2  Score=39.59  Aligned_cols=86  Identities=15%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecC
Q 038230          237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDV  316 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdV  316 (480)
                      .++++..+++||++|-.++      .   +  .      ++++..++.    ++|+.-+...|+.+.+|+++|+++|.-.
T Consensus        96 ~~~a~~Ai~AGA~fIvsP~------~---~--~------~vi~~~~~~----gi~~ipGv~TptEi~~A~~~Gad~vK~F  154 (232)
T 4e38_A           96 GEQALAAKEAGATFVVSPG------F---N--P------NTVRACQEI----GIDIVPGVNNPSTVEAALEMGLTTLKFF  154 (232)
T ss_dssp             HHHHHHHHHHTCSEEECSS------C---C--H------HHHHHHHHH----TCEEECEECSHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHcCCCEEEeCC------C---C--H------HHHHHHHHc----CCCEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence            3578889999999996543      2   1  1      234444553    7899999999999999999999999865


Q ss_pred             CCCCC-CchHHHHHHh-cCCCEEEEcCCCC
Q 038230          317 SAGQL-DPDMYKVVAG-LKVPYVAMHMRGD  344 (480)
Q Consensus       317 sg~~~-d~~m~~l~~~-~~~~vVlmh~~g~  344 (480)
                      -+... -+++++-++. +. .+=+|+..|+
T Consensus       155 Pa~~~gG~~~lkal~~p~p-~ip~~ptGGI  183 (232)
T 4e38_A          155 PAEASGGISMVKSLVGPYG-DIRLMPTGGI  183 (232)
T ss_dssp             STTTTTHHHHHHHHHTTCT-TCEEEEBSSC
T ss_pred             cCccccCHHHHHHHHHHhc-CCCeeeEcCC
Confidence            54332 2455555544 32 2345577775

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=85.60  E-value=6.2  Score=40.46  Aligned_cols=105  Identities=8%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHH--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEA--  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aa--  305 (480)
                      .++++..+.|++++++|-..|-+-+   .|.....+..+++++-...++++++... .+++|.+|..   +++.+.+.  
T Consensus       124 ~~~e~~~~~a~~~~~~G~~~iKl~G---~~~~~~~~~~~~~~~d~e~v~avR~avG-~d~~L~vDaN~~~~~~~A~~~~~  199 (405)
T 3rr1_A          124 DRPADVIAGMKALQAGGFDHFKLNG---CEEMGIIDTSRAVDAAVARVAEIRSAFG-NTVEFGLDFHGRVSAPMAKVLIK  199 (405)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEES---CCSSSCBCSHHHHHHHHHHHHHHHHTTG-GGSEEEEECCSCBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEec---CCcccccccchhHHHHHHHHHHHHHHhC-CCceEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999999822   1222223334556666667788887642 3789999964   45544333  


Q ss_pred             -HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          306 -VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       306 -L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                       |+ .|..+|-+-......+.+..+.+..++|+++-
T Consensus       200 ~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~d  235 (405)
T 3rr1_A          200 ELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAG  235 (405)
T ss_dssp             HHGGGCCSCEECSSCCSSTHHHHHHHTTCSSCEEEC
T ss_pred             HHHhcCCCEEECCCCcccHHHHHHHHhcCCCCEEec
Confidence             33 38888876543322356777777788888863

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=85.33  E-value=18  Score=35.59  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             HHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-------CHH----HHHHHHHc
Q 038230          240 VRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-------YSK----VASEAVGK  308 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-------~~~----v~~aaL~~  308 (480)
                      +++.++.|||.|++-.-   .+++  ...+-++.+..++++..+.    ++|+-+-++       +++    .++.|.+.
T Consensus       131 ve~Av~~GAdaV~~~i~---~Gs~--~~~~~l~~i~~v~~~a~~~----GlpvIie~~~G~~~~~d~e~i~~aariA~el  201 (295)
T 3glc_A          131 MDDAVRLNSCAVAAQVY---IGSE--YEHQSIKNIIQLVDAGMKV----GMPTMAVTGVGKDMVRDQRYFSLATRIAAEM  201 (295)
T ss_dssp             HHHHHHTTCSEEEEEEC---TTST--THHHHHHHHHHHHHHHHTT----TCCEEEEECC----CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEEEEE---CCCC--cHHHHHHHHHHHHHHHHHc----CCEEEEECCCCCccCCCHHHHHHHHHHHHHh
Confidence            34445899999997532   1211  1334455566666666654    788888543       355    34566678


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                      |+|+|- ++. . .+.|-++++...+|||+  ..|...+.                +.+.+.+..+.++|..
T Consensus       202 GAD~VK-t~~-t-~e~~~~vv~~~~vPVv~--~GG~~~~~----------------~~~l~~v~~ai~aGA~  252 (295)
T 3glc_A          202 GAQIIK-TYY-V-EKGFERIVAGCPVPIVI--AGGKKLPE----------------REALEMCWQAIDQGAS  252 (295)
T ss_dssp             TCSEEE-EEC-C-TTTHHHHHHTCSSCEEE--ECCSCCCH----------------HHHHHHHHHHHHTTCS
T ss_pred             CCCEEE-eCC-C-HHHHHHHHHhCCCcEEE--EECCCCCH----------------HHHHHHHHHHHHhCCe
Confidence            999986 332 2 24677777777888875  44443221                2345667777788885

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=85.27  E-value=4.2  Score=41.12  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-----
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-----  294 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-----  294 (480)
                      .++..+.|+..+++|+|.|+|++.-             .|...-.-|.+...+.+..+++++++... .+ ||+|     
T Consensus       160 i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg-~~-~v~vrls~~  237 (364)
T 1vyr_A          160 VNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWS-AD-RIGIRVSPI  237 (364)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSC-GG-GEEEEECCS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcC-CC-cEEEEEccc
Confidence            4566677888889999999997631             12111123456677788889999998642 13 7777     


Q ss_pred             eCCC--------HH----HHHHHHHcCCCEEecCCCC-----CCCchHH-HHHHhcCCCEEEE
Q 038230          295 DTFY--------SK----VASEAVGKGAHIVNDVSAG-----QLDPDMY-KVVAGLKVPYVAM  339 (480)
Q Consensus       295 DT~~--------~~----v~~aaL~~G~~iINdVsg~-----~~d~~m~-~l~~~~~~~vVlm  339 (480)
                      |.+.        .+    .++++-++|+++|.-..+.     ....+++ .+.+..+.+|+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~  300 (364)
T 1vyr_A          238 GTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGA  300 (364)
T ss_dssp             SCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEE
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEE
Confidence            5332        22    3555556799999855421     1122333 3444567887764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=85.21  E-value=2.9  Score=44.13  Aligned_cols=66  Identities=12%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEEe
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iIN  314 (480)
                      ..++++.++++|||+|.|+..-..|           +....+++.+++..  .++||.+ +...++.++.+.++|++.|.
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~G~~-----------~~~~~~i~~i~~~~--~~~pvi~~~v~t~~~a~~l~~aGad~I~  322 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQGNS-----------VYQIAMVHYIKQKY--PHLQVIGGNVVTAAQAKNLIDAGVDGLR  322 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCCCS-----------HHHHHHHHHHHHHC--TTCEEEEEEECSHHHHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHHcCCCEEEeeccCCcc-----------hhHHHHHHHHHHhC--CCCceEecccchHHHHHHHHHcCCCEEE
Confidence            5678888999999999997532111           12334566666652  2678775 67889999999999999885

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=85.10  E-value=8.4  Score=38.55  Aligned_cols=103  Identities=21%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCC---------CC----CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCC
Q 038230          235 AAVSQVRLMISEGADMIDIGAQ---------ST----RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTF  297 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~e---------St----rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~  297 (480)
                      +-.+.|+...++|.|.|+|.+.         |.    |...-.-|.+...+.+..+|+++++..   +.||+|    +.+
T Consensus       145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v---~~pv~vRls~~~~  221 (340)
T 3gr7_A          145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW---DGPLFVRISASDY  221 (340)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEESCCC
T ss_pred             HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc---CCceEEEeccccc
Confidence            4445677788899999999975         22    222113456667777889999998763   555444    321


Q ss_pred             --------C-HHHHHHHHHcCCCEEecCCCCCC----------CchHHHHH-HhcCCCEEEEc
Q 038230          298 --------Y-SKVASEAVGKGAHIVNDVSAGQL----------DPDMYKVV-AGLKVPYVAMH  340 (480)
Q Consensus       298 --------~-~~v~~aaL~~G~~iINdVsg~~~----------d~~m~~l~-~~~~~~vVlmh  340 (480)
                              + .+++++.-++|+++|.=.++...          .-+++..+ +..+.+|+..-
T Consensus       222 ~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~G  284 (340)
T 3gr7_A          222 HPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVG  284 (340)
T ss_dssp             STTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEES
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeC
Confidence                    1 34455555579999884433211          11233333 34678877643

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=85.01  E-value=23  Score=35.52  Aligned_cols=143  Identities=12%  Similarity=0.011  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHHHHHHHH-
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKVASEAVG-  307 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v~~aaL~-  307 (480)
                      ++++..+.|++++++|-+.|.|.+..        +.+.    ...+++++++... .+++|.+|.   ++++.+.+.++ 
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~iKik~g~--------~~~~----~~e~v~avr~a~g-~d~~l~vDan~~~~~~~a~~~~~~  211 (379)
T 2rdx_A          145 SEAETRAELARHRAAGYRQFQIKVGA--------DWQS----DIDRIRACLPLLE-PGEKAMADANQGWRVDNAIRLARA  211 (379)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECCS--------CHHH----HHHHHHHHGGGSC-TTCEEEEECTTCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccC--------CHHH----HHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence            56788999999999999999997531        2333    3445677777532 379999995   35554443333 


Q ss_pred             ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230          308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI  384 (480)
Q Consensus       308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I  384 (480)
                         +|. +|-+-..  ..+.+..+.+..++|++.-.+-   .+.                +.+++.+   .+.+++  =|
T Consensus       212 l~~~~i-~iE~P~~--~~~~~~~l~~~~~iPI~~de~i---~~~----------------~~~~~~i---~~~~~d--~v  264 (379)
T 2rdx_A          212 TRDLDY-ILEQPCR--SYEECQQVRRVADQPMKLDECV---TGL----------------HMAQRIV---ADRGAE--IC  264 (379)
T ss_dssp             TTTSCC-EEECCSS--SHHHHHHHHTTCCSCEEECTTC---CSH----------------HHHHHHH---HHTCCS--EE
T ss_pred             HHhCCe-EEeCCcC--CHHHHHHHHhhCCCCEEEeCCc---CCH----------------HHHHHHH---HcCCCC--EE
Confidence               378 8765432  1255666666778888863221   110                1112211   233343  57


Q ss_pred             EEecCCCCccChhHHHHHHHhcccCCCcEEEe
Q 038230          385 IIDPGLGFSKKAEHNLDILLGLAASHAPILIG  416 (480)
Q Consensus       385 ilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G  416 (480)
                      .+||.-  .-.....+++.+..+..|+++.+|
T Consensus       265 ~ik~~~--~GGit~~~~i~~~A~~~g~~~~~~  294 (379)
T 2rdx_A          265 CLKISN--LGGLSKARRTRDFLIDNRMPVVAE  294 (379)
T ss_dssp             EEETTT--TTSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEeccc--cCCHHHHHHHHHHHHHcCCeEEEe
Confidence            888854  111223344444335579999887

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=84.99  E-value=28  Score=35.15  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=67.3

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQ--------STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---  297 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~e--------StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---  297 (480)
                      ...++++..+.|++++++|-+.+-+-..        ...|... .+.+..++.....|+++++... .+++|.||..   
T Consensus       149 ~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~-~~~~~~~~~~~e~v~avR~a~G-~d~~l~vDan~~~  226 (407)
T 2o56_A          149 MLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNG-PLTDKILRLGYDRMAAIRDAVG-PDVDIIAEMHAFT  226 (407)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCS-SCCHHHHHHHHHHHHHHHHHHC-TTSEEEEECTTCS
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccC-CCchhHHHHHHHHHHHHHHhcC-CCCEEEEECCCCC
Confidence            3558999999999999999999998531        0001111 1123345555566677776422 3789999953   


Q ss_pred             CHHHHHHHHH----cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          298 YSKVASEAVG----KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       298 ~~~v~~aaL~----~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      +++.+.+.++    +|.++|-+--.....+.+..+.+..+++++.
T Consensus       227 ~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~  271 (407)
T 2o56_A          227 DTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNIPLAA  271 (407)
T ss_dssp             CHHHHHHHHHHHGGGCCSCEECSSCSSSHHHHHHHHHHCCSCEEE
T ss_pred             CHHHHHHHHHHHHhcCCCEEeCCCChhhHHHHHHHHHhCCCCEEe
Confidence            4544433332    3888887654322125677777778888886

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=84.97  E-value=13  Score=34.61  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-------CccC
Q 038230          323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-------FSKK  395 (480)
Q Consensus       323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-------f~k~  395 (480)
                      .+.++++++.|+++|.+|....|...     ..+++..+...+.+.+..+.|+++||.   +.+-|.-+       +..+
T Consensus        86 ~~~i~~a~~lG~~~v~~~~g~~~~~~-----~~~~~~~~~~~~~l~~l~~~a~~~gv~---l~lE~~~~~~~~~~~~~~~  157 (275)
T 3qc0_A           86 RRAVDEAAELGADCLVLVAGGLPGGS-----KNIDAARRMVVEGIAAVLPHARAAGVP---LAIEPLHPMYAADRACVNT  157 (275)
T ss_dssp             HHHHHHHHHTTCSCEEEECBCCCTTC-----CCHHHHHHHHHHHHHHHHHHHHHHTCC---EEECCCCGGGTTTTBSCCC
T ss_pred             HHHHHHHHHhCCCEEEEeeCCCCCCC-----cCHHHHHHHHHHHHHHHHHHHHHcCCE---EEEeECCCcccCCccccCC
Confidence            35678888888888888764344210     112344556667777888888888884   88887432       3445


Q ss_pred             hhHHHHHHHhc
Q 038230          396 AEHNLDILLGL  406 (480)
Q Consensus       396 ~~~~~~~lr~l  406 (480)
                      ..+..++++.+
T Consensus       158 ~~~~~~l~~~~  168 (275)
T 3qc0_A          158 LGQALDICETL  168 (275)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            56656666654

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=84.87  E-value=7.6  Score=38.40  Aligned_cols=116  Identities=14%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      =+||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...+. +|..++...+.....-  ...+.+.+=+.
T Consensus        15 ~vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~~~~~~g--rvpViaGvg~~   86 (311)
T 3h5d_A           15 FITP--FHEDGS-INFDAIPALIEHLLAHHTDGILLAG-TTAES-PTLTH-DEELELFAAVQKVVNG--RVPLIAGVGTN   86 (311)
T ss_dssp             CCCC--BCTTSS-BCTTHHHHHHHHHHHTTCCCEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHSCS--SSCEEEECCCS
T ss_pred             eecC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHHHHHHHHhCC--CCcEEEeCCCc
Confidence            3688  865554 6888999999999999999999987 34433 23454 5666655544332221  12344445443


Q ss_pred             CHHHH----HHHHHcCC-CEEecCCCCCC--C-ch----HHHHHHhcCCCEEEEcC
Q 038230          298 YSKVA----SEAVGKGA-HIVNDVSAGQL--D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~v~----~aaL~~G~-~iINdVsg~~~--d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      +.+.+    +.|-+.|+ |-+-.+...-.  . ++    .-.++...+.|+++-+.
T Consensus        87 ~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~  142 (311)
T 3h5d_A           87 DTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNI  142 (311)
T ss_dssp             SHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence            43332    23444586 86665553211  1 23    33444557899998764

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=84.84  E-value=12  Score=38.03  Aligned_cols=109  Identities=9%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEeCCC-CCCCCC------CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CC
Q 038230          229 KFQSVEAAVSQVRLMISEGADMIDIGAQ-STRPMA------TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FY  298 (480)
Q Consensus       229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~e-StrP~a------~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~  298 (480)
                      ...++++..+.|++++++|-+.+.|-.. .+..|.      ...+.+..++.....|+++++... .+++|.||.   ++
T Consensus       143 ~~~~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG-~d~~l~vDan~~~~  221 (403)
T 2ox4_A          143 SKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVG-PDVDIIVENHGHTD  221 (403)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHC-TTSEEEEECTTCSC
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhC-CCCeEEEECCCCCC
Confidence            3468899999999999999999998531 011111      001123445555566677776422 379999995   35


Q ss_pred             HHHHHHHHH----cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          299 SKVASEAVG----KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       299 ~~v~~aaL~----~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      ++.+.+.++    +|.++|-+-.....-+.+..+.++.+++++.
T Consensus       222 ~~~ai~~~~~l~~~~i~~iE~P~~~~d~~~~~~l~~~~~iPIa~  265 (403)
T 2ox4_A          222 LVSAIQFAKAIEEFNIFFYEEINTPLNPRLLKEAKKKIDIPLAS  265 (403)
T ss_dssp             HHHHHHHHHHHGGGCEEEEECCSCTTSTHHHHHHHHTCCSCEEE
T ss_pred             HHHHHHHHHHHHhhCCCEEeCCCChhhHHHHHHHHHhCCCCEEe
Confidence            544433332    3888887654332235677777788888886

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=84.82  E-value=25  Score=32.74  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=42.5

Q ss_pred             hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC----ccChhHH
Q 038230          324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF----SKKAEHN  399 (480)
Q Consensus       324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf----~k~~~~~  399 (480)
                      +.++++++.|+++|++|....+..      ..+++..+...+.+.+.+  +.+.|+   +|.+-|..++    ..+.++-
T Consensus        93 ~~i~~A~~lGa~~v~~~~g~~~~~------~~~~~~~~~~~~~l~~l~--a~~~gv---~l~lEn~~~~~~~~~~~~~~~  161 (285)
T 1qtw_A           93 DEMQRCEQLGLSLLNFHPGSHLMQ------ISEEDCLARIAESINIAL--DKTQGV---TAVIENTAGQGSNLGFKFEHL  161 (285)
T ss_dssp             HHHHHHHHTTCCEEEECCCBCTTT------SCHHHHHHHHHHHHHHHH--HHCSSC---EEEEECCCCCTTBCCSSHHHH
T ss_pred             HHHHHHHHcCCCEEEECcCCCCCC------CCHHHHHHHHHHHHHHHH--hccCCC---EEEEecCCCCCCcccCCHHHH
Confidence            468888889999888886432211      012233334444455543  345788   4888885442    4566666


Q ss_pred             HHHHHhc
Q 038230          400 LDILLGL  406 (480)
Q Consensus       400 ~~~lr~l  406 (480)
                      .++++.+
T Consensus       162 ~~l~~~v  168 (285)
T 1qtw_A          162 AAIIDGV  168 (285)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            6777664

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=84.68  E-value=21  Score=35.28  Aligned_cols=108  Identities=11%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             HHHHHHHcCCcCCCCeEEEeCC-----CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccc
Q 038230          276 PVLEAVLTMPEMEGKLVSVDTF-----YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQN  350 (480)
Q Consensus       276 ~vi~~l~~~~~~~~~pISIDT~-----~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~  350 (480)
                      ..++.+++.   ++.|+.+..+     ..+.++.+++.|+++|- +.++. .+++++.+++++.+++..-.     +   
T Consensus        67 ~~i~~i~~~---~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~-l~~g~-p~~~~~~l~~~g~~v~~~v~-----s---  133 (326)
T 3bo9_A           67 KAISELRQK---TDKPFGVNIILVSPWADDLVKVCIEEKVPVVT-FGAGN-PTKYIRELKENGTKVIPVVA-----S---  133 (326)
T ss_dssp             HHHHHHHTT---CSSCEEEEEETTSTTHHHHHHHHHHTTCSEEE-EESSC-CHHHHHHHHHTTCEEEEEES-----S---
T ss_pred             HHHHHHHHh---cCCCEEEEEeccCCCHHHHHHHHHHCCCCEEE-ECCCC-cHHHHHHHHHcCCcEEEEcC-----C---
Confidence            445666664   3556665532     26788889999999986 34332 46788888898888775211     0   


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC-CCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230          351 EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG-LGFSKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       351 ~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg-iGf~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                                       .+.+..+.++|++  -|+++.. .|.......++++++++ +..++|++.
T Consensus       134 -----------------~~~a~~a~~~GaD--~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPvia  181 (326)
T 3bo9_A          134 -----------------DSLARMVERAGAD--AVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIA  181 (326)
T ss_dssp             -----------------HHHHHHHHHTTCS--CEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEE
T ss_pred             -----------------HHHHHHHHHcCCC--EEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEE
Confidence                             0223346678986  7999852 22211112367777776 346889876

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=84.55  E-value=12  Score=36.78  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             cC-CHHHHHHHHHHHHHcCCCEEEeCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeCCC--
Q 038230          230 FQ-SVEAAVSQVRLMISEGADMIDIGAQSTR------PMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDTFY--  298 (480)
Q Consensus       230 ~~-~~e~a~~~A~~~v~~GAdiIDIG~eStr------P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT~~--  298 (480)
                      |. +++.+.+.++++++.||+-|.|-.+..-      +|...++.++-.+++.-++++-..    .+..|-  .|++-  
T Consensus        89 yg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~----~~~~i~aRtda~~~~  164 (295)
T 1xg4_A           89 FGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTD----PDFVIMARTDALAVE  164 (295)
T ss_dssp             SSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSS----TTSEEEEEECCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccC----CCcEEEEecHHhhhc
Confidence            55 7899999999999999999999765421      234467766666776655544331    244333  25443  


Q ss_pred             --HHHHHHHHH---cCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcC
Q 038230          299 --SKVASEAVG---KGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 --~~v~~aaL~---~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~  341 (480)
                        .+.++.|..   +||++|- +-+.. + +.+..++++..+|+++.-.
T Consensus       165 gl~~ai~ra~ay~eAGAd~i~-~e~~~-~~~~~~~i~~~~~iP~~~N~~  211 (295)
T 1xg4_A          165 GLDAAIERAQAYVEAGAEMLF-PEAIT-ELAMYRQFADAVQVPILANIT  211 (295)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEE-ETTCC-SHHHHHHHHHHHCSCBEEECC
T ss_pred             CHHHHHHHHHHHHHcCCCEEE-EeCCC-CHHHHHHHHHHcCCCEEEEec
Confidence              345554433   5999987 54543 4 6778888888999876433

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=84.53  E-value=20  Score=35.45  Aligned_cols=147  Identities=16%  Similarity=0.161  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCCCHHHHHHHHHcCCCE
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~~~~v~~aaL~~G~~i  312 (480)
                      +..++.++.|+++|||+|-|.- |.. +.+.+|++.=-+.+.|-++.+.+..+  +.+ +-++..-...++.-.+.|++.
T Consensus       190 ~~~~~~~~~qi~aGad~i~i~D-~~a-~~~~lsp~~f~~f~~p~~k~i~~~~~--~~~iih~~g~~~~~l~~~~~~g~d~  265 (348)
T 4ay7_A          190 EASIIYANAMVEAGADVIAIAD-PVA-SPDLMSPDSFRQFLKSRLQKFASSVN--SVTVLHICGNVNPILSDMADCGFEG  265 (348)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEC-GGG-STTTSCHHHHHHHHHHHHHHHHHHSS--SEEEEECCSCCHHHHHHHHTSCCSE
T ss_pred             HHHHHHHHHHHhcCCCcceeec-ccc-ccccCCHHHHHHHhhHHHHHHHhhcc--CCcEEEecCCcHHHHHHHHHhcccc
Confidence            3445678899999999999863 211 23467776655566677776665432  333 455655566777777789999


Q ss_pred             EecCCCCCCCchHHHHHHh-cCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230          313 VNDVSAGQLDPDMYKVVAG-LKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL  390 (480)
Q Consensus       313 INdVsg~~~d~~m~~l~~~-~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi  390 (480)
                      |+ +.-   .-..++.+++ +|-.++++-+- +|. .+..   -.    .+++.+...+.+    +.|-    -|+=||.
T Consensus       266 i~-~d~---~~~~~~~~k~~~g~~~~l~Gnl-dp~~~l~~---g~----~e~i~~~v~~~l----~~~g----~I~~~Gh  325 (348)
T 4ay7_A          266 LS-VEE---KIGSAKKGKEVIGTRARLVGNV-SSPFTLLP---GP----VDKIKAEAKEAL----EGGI----DVLAPGC  325 (348)
T ss_dssp             EE-CCG---GGCCHHHHHHHHTTSSEEEEEE-CCCCCCTT---CC----HHHHHHHHHHHH----HTTC----SEEEESS
T ss_pred             cc-ccc---hhhHHHHHHHHhCCCEEEEcCC-CChHhhcC---CC----HHHHHHHHHHHH----hCCC----CEEeCCC
Confidence            97 321   1112334443 66666665321 132 1111   01    123333333333    3332    3889999


Q ss_pred             CCc-cChhHHHHHHH
Q 038230          391 GFS-KKAEHNLDILL  404 (480)
Q Consensus       391 Gf~-k~~~~~~~~lr  404 (480)
                      |.. .+..+|++.+-
T Consensus       326 gi~p~tp~env~a~v  340 (348)
T 4ay7_A          326 GIAPMTPLENVKALV  340 (348)
T ss_dssp             SCCTTCCHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHH
Confidence            874 45566665543

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=84.28  E-value=8  Score=35.87  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCH-HHHHHHHH
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYS-KVASEAVG  307 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~-~v~~aaL~  307 (480)
                      ++...+.++.+.+.|||+|-++..  ..-|+.. ..        ...++.|++.   ++.|+-++.  .++ +.++.+.+
T Consensus        22 ~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~-~~--------~~~i~~l~~~---~~~~~~v~l~vnd~~~~v~~~~~   89 (230)
T 1rpx_A           22 FSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT-IG--------PLVVDSLRPI---TDLPLDVHLMIVEPDQRVPDFIK   89 (230)
T ss_dssp             GGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC-CC--------HHHHHHHGGG---CCSCEEEEEESSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeeccCCcccccc-cC--------HHHHHHHHhc---cCCcEEEEEEecCHHHHHHHHHH
Confidence            345666777888899999988731  1112211 11        1334555654   244444442  224 47888899


Q ss_pred             cCCCEEecCCCC--CC--CchHHHHHHhcCCCEEEEc
Q 038230          308 KGAHIVNDVSAG--QL--DPDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       308 ~G~~iINdVsg~--~~--d~~m~~l~~~~~~~vVlmh  340 (480)
                      +|++.|. +-+.  ..  ..+.++.++++|..+.+.-
T Consensus        90 ~Gad~v~-vh~~~~~~~~~~~~~~~~~~~g~~ig~~~  125 (230)
T 1rpx_A           90 AGADIVS-VHCEQSSTIHLHRTINQIKSLGAKAGVVL  125 (230)
T ss_dssp             TTCSEEE-EECSTTTCSCHHHHHHHHHHTTSEEEEEE
T ss_pred             cCCCEEE-EEecCccchhHHHHHHHHHHcCCcEEEEe
Confidence            9999984 3322  21  1457788888887766543

>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}

Probab=84.20  E-value=12  Score=36.81  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CCCeEEEeCCC-HHHHHHHHHcCCCE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EGKLVSVDTFY-SKVASEAVGKGAHI  312 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~~pISIDT~~-~~v~~aaL~~G~~i  312 (480)
                      ..++.++.|+++|||+|=+. .|.   +..+|++.--+...|-.+.+.+..+. .++|+..=+-. ...++.-.+.|++.
T Consensus       180 ~~~~~~~~~~~aGad~i~i~-d~~---~~~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~~~~l~~l~~~g~d~  255 (338)
T 2eja_A          180 TVLAYLKEQIKAGADVVQIF-DSW---VNNLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDLAVDYRADA  255 (338)
T ss_dssp             HHHHHHHHHHHTTCSEEEEE-ETT---GGGSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTSCCSE
T ss_pred             HHHHHHHHHHHhCCCEEEEe-cCc---cccCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCcHHHHHHHHHcCCCE
Confidence            34567889999999998776 332   23677765444444444443322110 15565553333 44555555679998


Q ss_pred             EecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHH-CCCCCCCEEEecCCC
Q 038230          313 VNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAEL-SGIPAWRIIIDPGLG  391 (480)
Q Consensus       313 INdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~-~Gi~~~~IilDPgiG  391 (480)
                      ++ +.-   ...+.++.+.+  .++++-.- .| +.-.   ..    .+++.    +.+.++.+ .|- ....|+.||.|
T Consensus       256 ~~-~d~---~~dl~~~~~~~--~~~l~Gn~-dp-~~l~---gt----~e~i~----~~v~~~l~~~g~-~~g~I~~~g~g  315 (338)
T 2eja_A          256 LS-VDW---SVDIPELFKIY--DKGFQGNL-EP-AVLY---AS----EEVIE----EKTLGLLRRIPV-KTRYVFNLGHG  315 (338)
T ss_dssp             EE-CCT---TSCHHHHHHHC--CSEEECCB-CG-GGGG---SC----HHHHH----HHHHHHHTTCCC-SSSEEBCBSSC
T ss_pred             EE-eCC---CCCHHHHHHhC--CeEEEECC-CH-HHhc---CC----HHHHH----HHHHHHHHHhCC-CCCeEEeCCCC
Confidence            86 321   23455555556  55555432 13 2211   11    12333    33333333 353 24799999998


Q ss_pred             Cc-cChhHHHHHHHh
Q 038230          392 FS-KKAEHNLDILLG  405 (480)
Q Consensus       392 f~-k~~~~~~~~lr~  405 (480)
                      .. .+..+|+..+-+
T Consensus       316 i~~~~p~en~~a~v~  330 (338)
T 2eja_A          316 LAPDMELEKVKYLVD  330 (338)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            73 445666665543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=84.19  E-value=1.9  Score=44.23  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEEe
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iIN  314 (480)
                      ..++++.++++|+|+|.|+...   +    ++    +.+...|+.+++..  .++||.+ ....++.++.+.++|+|.|.
T Consensus       154 ~~~~a~~~~~~G~d~i~i~~~~---g----~~----~~~~e~i~~ir~~~--~~~pviv~~v~~~~~a~~a~~~Gad~I~  220 (404)
T 1eep_A          154 TIERVEELVKAHVDILVIDSAH---G----HS----TRIIELIKKIKTKY--PNLDLIAGNIVTKEAALDLISVGADCLK  220 (404)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC---C----SS----HHHHHHHHHHHHHC--TTCEEEEEEECSHHHHHHHHTTTCSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEeCCC---C----Ch----HHHHHHHHHHHHHC--CCCeEEEcCCCcHHHHHHHHhcCCCEEE
Confidence            3567788899999999996422   1    11    22334566666652  1678886 67779999999999999886


Q ss_pred             c
Q 038230          315 D  315 (480)
Q Consensus       315 d  315 (480)
                      -
T Consensus       221 v  221 (404)
T 1eep_A          221 V  221 (404)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}

Probab=83.94  E-value=8  Score=39.06  Aligned_cols=149  Identities=11%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC----CCeEEE-eCCCHHHHHHHHHc
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME----GKLVSV-DTFYSKVASEAVGK  308 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~----~~pISI-DT~~~~v~~aaL~~  308 (480)
                      +..++.++.|+++|||+|-|.- |.   +..+|++.=.+-..|-.+.|.+..+..    ++|+-. ..-....++.-.+.
T Consensus       197 ~~~~~y~~~qi~aGad~i~ifD-s~---~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~~~~l~~l~~~  272 (368)
T 4exq_A          197 QAVAAYLNAQIEAGAQAVMIFD-TW---GGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAAT  272 (368)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEE-TT---GGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTCGGGHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCEEEEeC-Cc---cccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHHHHHHHHh
Confidence            3445677889999999998853 32   346777665556667776666543211    256433 33334556666667


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |++.++ +.   ..-.+.+..+.+|-.++++-+- +|....    ..    -+++.+..++.++.+   |- ....|+-|
T Consensus       273 g~d~i~-~d---~~~dl~~ak~~~g~~~~l~Gnl-dp~~L~----gt----~e~I~~~v~~~l~~~---g~-~~g~I~n~  335 (368)
T 4exq_A          273 GVDAVG-LD---WTVNLGRARERVAGRVALQGNL-DPTILF----AP----PEAIRAEARAVLDSY---GN-HPGHVFNL  335 (368)
T ss_dssp             SCSEEE-CC---TTSCHHHHHHHHTTSSEEEEEE-CGGGGG----SC----HHHHHHHHHHHHHHH---CS-CSCEEEEE
T ss_pred             CCCEEe-eC---CCCCHHHHHHHhCCCEEEEECC-CHHHhC----CC----HHHHHHHHHHHHHHh---CC-CCCEEEeC
Confidence            999996 32   2245666667777666665331 232221    11    233444444555544   22 13689999


Q ss_pred             CCCCc-cChhHHHHHH
Q 038230          389 GLGFS-KKAEHNLDIL  403 (480)
Q Consensus       389 giGf~-k~~~~~~~~l  403 (480)
                      |.|.. .+..+|+..+
T Consensus       336 Ghgi~p~tp~Env~a~  351 (368)
T 4exq_A          336 GHGISQFTPPEHVAEL  351 (368)
T ss_dssp             SSCCCTTCCHHHHHHH
T ss_pred             CCCCCCCcCHHHHHHH
Confidence            99874 4456666544

>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1

Probab=83.93  E-value=6.3  Score=39.25  Aligned_cols=148  Identities=18%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC--CCCe-EEEeCCCHHHHHHHHHcCCCE
Q 038230          236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM--EGKL-VSVDTFYSKVASEAVGKGAHI  312 (480)
Q Consensus       236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~--~~~p-ISIDT~~~~v~~aaL~~G~~i  312 (480)
                      .++.++.|+++|||+|=+. +|.   +..+|++.-.+...|.++.+.+..+.  .++| +-+.--....++.-.+.|++.
T Consensus       195 ~~~~~~~~~~aGad~iqi~-D~~---~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~ih~c~g~~~~l~~l~~~g~d~  270 (353)
T 1j93_A          195 MAKYIRYQADSGAQAVQIF-DSW---ATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLPLTGVDV  270 (353)
T ss_dssp             HHHHHHHHHHTTCSEEEEE-CGG---GGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCTTTGGGGGGGCCSE
T ss_pred             HHHHHHHHHHhCCCEEEEe-Ccc---cccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCEEEECCChHHHHHHHHhcCCCE
Confidence            4467788999999998776 332   23677765444444544443322110  1344 334444444555555679998


Q ss_pred             EecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC
Q 038230          313 VNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF  392 (480)
Q Consensus       313 INdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf  392 (480)
                      ++ +.   ....+.++.+.++-.++++-.- .| +.-.   .+    .+++.+..++.++.+   |-  .+.|+-||.|+
T Consensus       271 ~~-~d---~~~d~~~~~~~~g~~~~l~Gnl-dp-~~l~---~~----~e~i~~~v~~~l~~~---~~--~g~I~~~g~gi  332 (353)
T 1j93_A          271 VS-LD---WTVDMADGRRRLGPNVAIQGNV-DP-GVLF---GS----KEFITNRINDTVKKA---GK--GKHILNLGHGI  332 (353)
T ss_dssp             EE-CC---TTSCHHHHHHHTCSSSEEECCB-CG-GGGG---SC----HHHHHHHHHHHHHHH---CS--SSEEBCBSSCC
T ss_pred             EE-eC---CCCCHHHHHHHcCCCeEEEecC-CH-HHHc---CC----HHHHHHHHHHHHHHh---CC--CCEEEeCCCCC
Confidence            87 43   2345666666677666665432 13 2211   11    233333334444433   43  38999999998


Q ss_pred             c-cChhHHHHHHHh
Q 038230          393 S-KKAEHNLDILLG  405 (480)
Q Consensus       393 ~-k~~~~~~~~lr~  405 (480)
                      . .+..+|+..+-+
T Consensus       333 ~~~~~~enl~a~ve  346 (353)
T 1j93_A          333 KVGTPEENFAHFFE  346 (353)
T ss_dssp             CTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            5 445667666554

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=83.76  E-value=2.6  Score=42.73  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHH---HcCCCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          232 SVEAAVSQVRLMI---SEGADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       232 ~~e~a~~~A~~~v---~~GAdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      ++++..+-|+++.   +.|||+||||..+-. |+.  -....+.+.+..+++.+++.   .++||.+
T Consensus       137 ~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg--~~l~~~~e~~~~il~av~~~---~~~PV~v  198 (354)
T 4ef8_A          137 SMRENVEMCKRLAAVATEKGVILELNLSCPNVPGK--PQVAYDFDAMRQCLTAVSEV---YPHSFGV  198 (354)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTS--CCGGGSHHHHHHHHHHHHHH---CCSCEEE
T ss_pred             CHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCc--hhhccCHHHHHHHHHHHHHh---hCCCeEE
Confidence            4566666676665   689999999975422 221  12223445567777777765   3566554

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=83.68  E-value=10  Score=36.95  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY  298 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~  298 (480)
                      +||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+ ...|. +|..++.   +...+..  .++...+=+.+
T Consensus         8 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-eEr~~v~---~~~~~~~--~gViaGvg~~~   76 (288)
T 2nuw_A            8 ITP--FDKQGK-VNVDALKTHAKNLLEKGIDAIFVNG-TTGLG-PALSK-DEKRQNL---NALYDVT--HKLIFQVGSLN   76 (288)
T ss_dssp             CCC--BCTTSC-BCHHHHHHHHHHHHHTTCCEEEETS-TTTTG-GGSCH-HHHHHHH---HHHTTTC--SCEEEECCCSC
T ss_pred             ecC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccCh-hhCCH-HHHHHHH---HHHHHHh--CCeEEeeCCCC
Confidence            688  765454 6899999999999999999999987 44433 23444 5666654   4445542  13556665545


Q ss_pred             HH-H---HHHHHHcCCCEEecCCCCCC---C-chHH----HHHHhcCCCEEEEcC
Q 038230          299 SK-V---ASEAVGKGAHIVNDVSAGQL---D-PDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 ~~-v---~~aaL~~G~~iINdVsg~~~---d-~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ +   ++.|-+.|+|-+--+...-.   . ++++    .++...+.|+++-+.
T Consensus        77 t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~  131 (288)
T 2nuw_A           77 LNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNY  131 (288)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            33 3   33344469997776654211   2 3333    456667899998664

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=83.45  E-value=6.6  Score=36.82  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCCCE
Q 038230          235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGAHI  312 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~~i  312 (480)
                      +.++.|+.+.+.||+.|-+=... ..+       .........++.+++.   .++|+-+.  -.+++-+++++++|++.
T Consensus        31 d~~~~a~~~~~~Gad~i~v~d~~-~~~-------~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~   99 (253)
T 1thf_D           31 DPVELGKFYSEIGIDELVFLDIT-ASV-------EKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADK   99 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEESS-CSS-------SHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             CHHHHHHHHHHcCCCEEEEECCc-hhh-------cCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence            45677889999999987653211 111       0122334567777765   47888774  45678899999999998


Q ss_pred             EecCCCCCCCch-HHHHHHhcCC
Q 038230          313 VNDVSAGQLDPD-MYKVVAGLKV  334 (480)
Q Consensus       313 INdVsg~~~d~~-m~~l~~~~~~  334 (480)
                      +---+....+++ +.++++.++.
T Consensus       100 V~lg~~~l~~p~~~~~~~~~~g~  122 (253)
T 1thf_D          100 VSINTAAVENPSLITQIAQTFGS  122 (253)
T ss_dssp             EEESHHHHHCTHHHHHHHHHHCG
T ss_pred             EEEChHHHhChHHHHHHHHHcCC
Confidence            743222212343 6667777764

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=83.23  E-value=21  Score=33.64  Aligned_cols=69  Identities=13%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHH
Q 038230          323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDI  402 (480)
Q Consensus       323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~  402 (480)
                      .+.++++++.|+++|.+|....|..        +++-.+...+.+.+..+.|.++||   +|.+-|..   .+..+..++
T Consensus       105 ~~~i~~a~~lG~~~v~~~~G~~~~~--------~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE~~~---~~~~~~~~l  170 (290)
T 3tva_A          105 KEISDFASWVGCPAIGLHIGFVPES--------SSPDYSELVRVTQDLLTHAANHGQ---AVHLETGQ---ESADHLLEF  170 (290)
T ss_dssp             HHHHHHHHHHTCSEEEECCCCCCCT--------TSHHHHHHHHHHHHHHHHHHTTTC---EEEEECCS---SCHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCccc--------chHHHHHHHHHHHHHHHHHHHcCC---EEEEecCC---CCHHHHHHH
Confidence            3467777777777777775333322        122344455666777777777777   37777653   233444444


Q ss_pred             HHh
Q 038230          403 LLG  405 (480)
Q Consensus       403 lr~  405 (480)
                      ++.
T Consensus       171 ~~~  173 (290)
T 3tva_A          171 IED  173 (290)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=83.06  E-value=6.2  Score=37.33  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCCE--EEe--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230          236 AVSQVRLMISEGADM--IDI--GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG  309 (480)
Q Consensus       236 a~~~A~~~v~~GAdi--IDI--G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G  309 (480)
                      ..+..+.+.+.|||+  +||  |.  .-|+-. ..        .++++.+++..  .+.|+-+|  +.+|+-..+.+.. 
T Consensus        20 l~~~i~~~~~~g~d~iHvDvmDg~--fvpn~t-~G--------~~~v~~lr~~~--p~~~~dvhLmv~dp~~~i~~~~~-   85 (227)
T 1tqx_A           20 LAEETQRMESLGAEWIHLDVMDMH--FVPNLS-FG--------PPVINNLKKYT--KSIFFDVHLMVEYPEKYVPLLKT-   85 (227)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEEBSS--SSSCBC-CC--------HHHHHHHGGGC--SSCEEEEEEESSCGGGGGGGCTT-
T ss_pred             HHHHHHHHHHcCCCEEEEEEEeCC--cCcchh-cC--------HHHHHHHHHhC--CCCcEEEEEEEcCHHHHHHHHHh-
Confidence            334445556789998  787  42  223221 11        15677778752  15565554  3455533333333 


Q ss_pred             CCEEecCCCCCCC---chHHH---HHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC-CCCC
Q 038230          310 AHIVNDVSAGQLD---PDMYK---VVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG-IPAW  382 (480)
Q Consensus       310 ~~iINdVsg~~~d---~~m~~---l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G-i~~~  382 (480)
                      ++++- |-++..+   .+.++   .++++|+.+-+.-+   |.|..+                   .++.....| +   
T Consensus        86 Ad~it-vH~ea~~~~~~~~i~~~~~i~~~G~k~gvaln---p~tp~~-------------------~~~~~l~~g~~---  139 (227)
T 1tqx_A           86 SNQLT-FHFEALNEDTERCIQLAKEIRDNNLWCGISIK---PKTDVQ-------------------KLVPILDTNLI---  139 (227)
T ss_dssp             SSEEE-EEGGGGTTCHHHHHHHHHHHHTTTCEEEEEEC---TTSCGG-------------------GGHHHHTTTCC---
T ss_pred             CCEEE-EeecCCccCHHHHHHHHHHHHHcCCeEEEEeC---CCCcHH-------------------HHHHHhhcCCc---
Confidence            77774 3332211   45777   88899976665333   333211                   112223445 5   


Q ss_pred             CEE----EecCCCCccChhHHHHHHHhcc-cC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230          383 RII----IDPGLGFSKKAEHNLDILLGLA-AS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRV  456 (480)
Q Consensus       383 ~Ii----lDPgiGf~k~~~~~~~~lr~l~-~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv  456 (480)
                      +.+    ++||+|=.+-..+.++.+++++ .. ++++.+-           |-.+     ..|+   ..+...||+++-+
T Consensus       140 D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~Vd-----------GGI~-----~~ti---~~~~~aGAd~~V~  200 (227)
T 1tqx_A          140 NTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVD-----------GGLN-----IETT---EISASHGANIIVA  200 (227)
T ss_dssp             SEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEE-----------SSCC-----HHHH---HHHHHHTCCEEEE
T ss_pred             CEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEE-----------CCCC-----HHHH---HHHHHcCCCEEEE
Confidence            467    8998873333444455555552 22 5555431           2221     1233   4567789888765

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=83.00  E-value=4  Score=38.49  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc-CCCCeEEEeCCCH-HHHHHHHHcCC
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE-MEGKLVSVDTFYS-KVASEAVGKGA  310 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~-~~~~pISIDT~~~-~v~~aaL~~G~  310 (480)
                      .....+..+.+.+.|||+|-++.. ..+.....+.      -.++++.+++..+ ..++.+.+  .+| +-++.++++|+
T Consensus        16 ~~~l~~~i~~~~~~Gad~ihldi~-DG~fvp~~~~------g~~~v~~lr~~~~~~~~vhlmv--~dp~~~i~~~~~aGa   86 (230)
T 1tqj_A           16 FSRLGEEIKAVDEAGADWIHVDVM-DGRFVPNITI------GPLIVDAIRPLTKKTLDVHLMI--VEPEKYVEDFAKAGA   86 (230)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEEEEE-BSSSSSCBCB------CHHHHHHHGGGCCSEEEEEEES--SSGGGTHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHcCCCEEEEEEE-ecCCCcchhh------hHHHHHHHHhhcCCcEEEEEEc--cCHHHHHHHHHHcCC
Confidence            344556667777899999544431 1111111111      1145666776421 01333444  454 24688899999


Q ss_pred             CEE--ecC--CCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          311 HIV--NDV--SAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       311 ~iI--NdV--sg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      +.+  -.-  .. ....+.++.++++|..+.+.-+
T Consensus        87 dgv~vh~e~~~~-~~~~~~~~~i~~~g~~~gv~~~  120 (230)
T 1tqj_A           87 DIISVHVEHNAS-PHLHRTLCQIRELGKKAGAVLN  120 (230)
T ss_dssp             SEEEEECSTTTC-TTHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEECcccccc-hhHHHHHHHHHHcCCcEEEEEe
Confidence            988  322  21 2125788888899987776543

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=83.00  E-value=7.3  Score=38.37  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             cEEEEEEe--cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          211 TSVMGILN--LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       211 ~~imGIlN--~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      +.+=||+-  +||  |-+.|. .|.+...++++.++++|+|-|=++| ||.-+ ...+. +|..++...+   .+... .
T Consensus        13 ~~~~Gi~~alvTP--f~~dg~-iD~~~l~~lv~~li~~Gv~Gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~---~~~~~-g   82 (307)
T 3s5o_A           13 VDIAGIYPPVTTP--FTATAE-VDYGKLEENLHKLGTFPFRGFVVQG-SNGEF-PFLTS-SERLEVVSRV---RQAMP-K   82 (307)
T ss_dssp             CCCCEEECBCCCC--BCTTSC-BCHHHHHHHHHHHTTSCCSEEEESS-GGGTG-GGSCH-HHHHHHHHHH---HHTSC-T
T ss_pred             CCCCceEEeeEcc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccch-hhCCH-HHHHHHHHHH---HHHcC-C
Confidence            34446555  477  876554 7899999999999999999999987 33332 23444 5666655443   33211 2


Q ss_pred             CCeEEE--eCCCHH-H---HHHHHHcCCCEEecCCCCCC----C-ch----HHHHHHhcCCCEEEEcC
Q 038230          289 GKLVSV--DTFYSK-V---ASEAVGKGAHIVNDVSAGQL----D-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       289 ~~pISI--DT~~~~-v---~~aaL~~G~~iINdVsg~~~----d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      ++||-+  =+.+.+ +   ++.|-+.|+|-+--+...-.    . ++    +-.++...+.|+++-+.
T Consensus        83 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~  150 (307)
T 3s5o_A           83 NRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSV  150 (307)
T ss_dssp             TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeC
Confidence            466544  333333 2   33555569997776654211    1 23    33455557899998764

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=82.69  E-value=7.4  Score=39.49  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEE--
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSV--  294 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISI--  294 (480)
                      =+||  |-+.|. .|.+...+.++.++++|+|-|=++| ||.-+ ...+. +|..++.. +++....     .+||-+  
T Consensus        67 lvTP--F~~dg~-ID~~al~~lv~~li~~Gv~Gl~v~G-TTGE~-~~Ls~-eEr~~vi~~~ve~~~g-----rvpViaGv  135 (360)
T 4dpp_A           67 IKTP--YLPDGR-FDLEAYDDLVNIQIQNGAEGVIVGG-TTGEG-QLMSW-DEHIMLIGHTVNCFGG-----SIKVIGNT  135 (360)
T ss_dssp             CCCC--BCTTSS-BCHHHHHHHHHHHHHTTCCEEEESS-TTTTG-GGSCH-HHHHHHHHHHHHHHTT-----TSEEEEEC
T ss_pred             EeCc--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEecc-cccCh-hhCCH-HHHHHHHHHHHHHhCC-----CCeEEEec
Confidence            4789  865554 7899999999999999999999987 44433 23454 55655554 4444432     455544  


Q ss_pred             eCCCHHHH----HHHHHcCCCEEecCCCCCC---CchHH---HHHHhcCCCEEEEcC
Q 038230          295 DTFYSKVA----SEAVGKGAHIVNDVSAGQL---DPDMY---KVVAGLKVPYVAMHM  341 (480)
Q Consensus       295 DT~~~~v~----~aaL~~G~~iINdVsg~~~---d~~m~---~l~~~~~~~vVlmh~  341 (480)
                      =+.+.+.+    +.|-+.|+|-+--+.-.-.   +++++   .-+++. .|+++-+.
T Consensus       136 g~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~a-~PiilYNi  191 (360)
T 4dpp_A          136 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHM-GPTIIYNV  191 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGGG-SCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCEEEEeC
Confidence            33333332    3344569987766654211   13333   333343 58887653

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=82.64  E-value=23  Score=35.27  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHH-HHHH
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVAS-EAVG  307 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~-aaL~  307 (480)
                      ++++..+.|++++++|-+.|.|....        +.+...+++    +++++... .+++|.+|..   +++.+. +.++
T Consensus       141 ~~~~~~~~a~~~~~~Gf~~iKik~g~--------~~~~~~e~v----~avr~a~g-~~~~l~vDan~~~~~~~a~~~~~~  207 (369)
T 2p8b_A          141 DPENMAEEAASMIQKGYQSFKMKVGT--------NVKEDVKRI----EAVRERVG-NDIAIRVDVNQGWKNSANTLTALR  207 (369)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCS--------CHHHHHHHH----HHHHHHHC-TTSEEEEECTTTTBSHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCcCEEEEEeCC--------CHHHHHHHH----HHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHH
Confidence            67888999999999999999996421        344555554    44444321 2789999964   344433 3333


Q ss_pred             ----cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          308 ----KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       308 ----~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                          +|.++|-+--.....+.+..+.+..++|++.
T Consensus       208 ~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI~~  242 (369)
T 2p8b_A          208 SLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMI  242 (369)
T ss_dssp             TSTTSCCSCEECCBCTTCHHHHHHHHHTCCSCEEE
T ss_pred             HHHhCCCcEEECCCCcccHHHHHHHHHhCCCCEEe
Confidence                3888887654322125577777778888886

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=82.42  E-value=8.6  Score=38.12  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             ecCCCCCC-CCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEe
Q 038230          218 NLTPDSFS-DGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       218 N~tpDSFs-dgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISID  295 (480)
                      =+||  |- +.|. .|.+...++++.++++|+|-|=++| ||.-+ ...+. +|..++...+ +.....   ..+.+.+=
T Consensus        18 ~vTP--f~~~dg~-iD~~~l~~lv~~li~~Gv~gl~v~G-tTGE~-~~Ls~-~Er~~v~~~~~~~~~gr---vpviaGvg   88 (318)
T 3qfe_A           18 AVTF--FDSKTDT-LDLASQERYYAYLARSGLTGLVILG-TNAEA-FLLTR-EERAQLIATARKAVGPD---FPIMAGVG   88 (318)
T ss_dssp             CCCC--EETTTTE-ECHHHHHHHHHHHHTTTCSEEEESS-GGGTG-GGSCH-HHHHHHHHHHHHHHCTT---SCEEEECC
T ss_pred             eeCC--ccCCCCC-CCHHHHHHHHHHHHHcCCCEEEeCc-cccCh-hhCCH-HHHHHHHHHHHHHhCCC---CcEEEeCC
Confidence            4688  86 4443 6899999999999999999999987 33332 23454 5566555544 333322   23444554


Q ss_pred             CCCHHH----HHHHHHcCCCEEecCCCC--C--CC-ch----HHHHHHhcCCCEEEEcCC
Q 038230          296 TFYSKV----ASEAVGKGAHIVNDVSAG--Q--LD-PD----MYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       296 T~~~~v----~~aaL~~G~~iINdVsg~--~--~d-~~----m~~l~~~~~~~vVlmh~~  342 (480)
                      +.+.+.    ++.|-+.|+|-+--+...  .  .. ++    +-.++...+.|+++-+..
T Consensus        89 ~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P  148 (318)
T 3qfe_A           89 AHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFP  148 (318)
T ss_dssp             CSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            434333    234445699977777652  1  12 23    334555678999987753

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=82.26  E-value=13  Score=36.22  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=69.9

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY  298 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~  298 (480)
                      +||  |-+.|. .|.+...++++.++++|+|-|-++| ||.-+. ..+. +|..++.   +.+.+...  ++.+.+=+.+
T Consensus         8 vTP--f~~dg~-iD~~~l~~lv~~li~~Gv~gl~~~G-ttGE~~-~Ls~-eEr~~v~---~~~~~~~~--gviaGvg~~~   76 (293)
T 1w3i_A            8 ITP--FTKDNR-IDKEKLKIHAENLIRKGIDKLFVNG-TTGLGP-SLSP-EEKLENL---KAVYDVTN--KIIFQVGGLN   76 (293)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCCEEEESS-TTTTGG-GSCH-HHHHHHH---HHHHTTCS--CEEEECCCSC
T ss_pred             eCC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cccChh-hCCH-HHHHHHH---HHHHHHcC--CEEEecCCCC
Confidence            688  765454 6899999999999999999999987 444332 3443 5666654   44455421  3566666655


Q ss_pred             HH-HHHHH---HHcCCCEEecCCCCCC----CchHH----HHHHhcCCCEEEEcC
Q 038230          299 SK-VASEA---VGKGAHIVNDVSAGQL----DPDMY----KVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 ~~-v~~aa---L~~G~~iINdVsg~~~----d~~m~----~l~~~~~~~vVlmh~  341 (480)
                      .+ +++.+   -+.|+|-+--+...-.    +++++    .++...+.|+++-+.
T Consensus        77 t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~  131 (293)
T 1w3i_A           77 LDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNY  131 (293)
T ss_dssp             HHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEC
Confidence            33 33333   3359997766554211    23333    455567899998664

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=82.19  E-value=14  Score=36.12  Aligned_cols=152  Identities=16%  Similarity=0.235  Sum_probs=82.0

Q ss_pred             HHHHHHcCCCEEEeCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC------HHH----HHH
Q 038230          240 VRLMISEGADMIDIGA-----QSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY------SKV----ASE  304 (480)
Q Consensus       240 A~~~v~~GAdiIDIG~-----eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~------~~v----~~a  304 (480)
                      |+-.-++|.|+|=+|.     .-..|...+++.+|-+...    +.+.+-.  ...+|+.|+..      ++.    +..
T Consensus        47 A~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~----~aV~r~~--~~~~vvaD~pfgsy~~s~~~a~~na~r  120 (281)
T 1oy0_A           47 ARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLV----RGVVRGA--PHALVVADLPFGSYEAGPTAALAAATR  120 (281)
T ss_dssp             HHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHH----HHHHHHC--TTSEEEEECCTTSSTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHH----HHHHhcC--CCCeEEEECCCCcccCCHHHHHHHHHH
Confidence            3444578999998872     1234555677765544444    3334321  14678899864      554    234


Q ss_pred             HHH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc---hhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230          305 AVG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ---YDDVCKQVASELYSKVRDAELSGIP  380 (480)
Q Consensus       305 aL~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~---~~~v~~ev~~~l~~~i~~a~~~Gi~  380 (480)
                      .++ +|++.|| +-+...-.+.++.+.+.+.||+. |..=+|++......+.   ..+    ..+.+.++...++++|-.
T Consensus       121 l~~eaGa~aVk-lEdg~e~~~~I~al~~agIpV~g-HiGLtPqsv~~~ggf~v~grt~----~a~~~i~rA~a~~eAGA~  194 (281)
T 1oy0_A          121 FLKDGGAHAVK-LEGGERVAEQIACLTAAGIPVMA-HIGFTPQSVNTLGGFRVQGRGD----AAEQTIADAIAVAEAGAF  194 (281)
T ss_dssp             HHHTTCCSEEE-EEBSGGGHHHHHHHHHHTCCEEE-EEECCC--------------CH----HHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhCCeEEE-ECCcHHHHHHHHHHHHCCCCEEe-eecCCcceecccCCeEEEeCcH----HHHHHHHHHHHHHHcCCc
Confidence            455 7999999 44432223455556678999775 5533565543221110   011    124455667777899995


Q ss_pred             CCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230          381 AWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPIL  414 (480)
Q Consensus       381 ~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil  414 (480)
                         .|+=+++   . .    ++.+++ +.+.+|++
T Consensus       195 ---~ivlE~v---p-~----~~a~~it~~l~iP~i  218 (281)
T 1oy0_A          195 ---AVVMEMV---P-A----ELATQITGKLTIPTV  218 (281)
T ss_dssp             ---EEEEESC---C-H----HHHHHHHHHCSSCEE
T ss_pred             ---EEEEecC---C-H----HHHHHHHHhCCCCEE
Confidence               5555565   1 1    234444 34678865

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=82.11  E-value=15  Score=35.35  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             hHHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC-EEEec--CCC-CccChhH
Q 038230          324 DMYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR-IIIDP--GLG-FSKKAEH  398 (480)
Q Consensus       324 ~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~-IilDP--giG-f~k~~~~  398 (480)
                      +.++++++.|+++|++|..+.+. ....  ....++-.+...+.|.+..+.|.+.||   + |.+-|  .-+ |..+.++
T Consensus       118 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~Gv---~~l~lE~~~~~~~~~~t~~~  192 (316)
T 3qxb_A          118 RAIDMTAAMEVPATGMPFGSYSAADALN--PARREEIYAIARDMWIELAAYAKRQGL---SMLYVEPVPLATEFPSSAAD  192 (316)
T ss_dssp             HHHHHHHHTTCCEEEECCBBCCHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHTC---CEEEECCCSCTTBSSCSHHH
T ss_pred             HHHHHHHHcCCCEEEecCCCcCccccCC--cccHHHHHHHHHHHHHHHHHHHHhcCC---eEEEEEecCCccccCCCHHH
Confidence            57889999999999988643221 0000  001133445567788888999999999   5 88888  433 5677777


Q ss_pred             HHHHHHhc
Q 038230          399 NLDILLGL  406 (480)
Q Consensus       399 ~~~~lr~l  406 (480)
                      ..++++.+
T Consensus       193 ~~~l~~~v  200 (316)
T 3qxb_A          193 AARLMADL  200 (316)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777776

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=82.03  E-value=13  Score=38.36  Aligned_cols=107  Identities=9%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA---TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVAS  303 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a---~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~  303 (480)
                      +.++++..+.|++++++|-..|-+...  .|+.   ..-+..+++++....++++++... .+++|.+|..   +++.+.
T Consensus       144 ~~~~e~~~~~a~~~~~~Gf~~iKlk~g--~~~~~~~G~~~~~~~~~~d~e~v~avR~avG-~d~~L~vDan~~~t~~~A~  220 (433)
T 3rcy_A          144 WTSADMAAESAADCVARGYTAVKFDPA--GPYTLRGGHMPAMTDISLSVEFCRKIRAAVG-DKADLLFGTHGQFTTAGAI  220 (433)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSEEEECCS--CCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT-TSSEEEECCCSCBCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCC--CCcccccCCCcchhhHHHHHHHHHHHHHHhC-CCCeEEEeCCCCCCHHHHH
Confidence            368999999999999999999998642  1210   001112345555666777776532 3789999953   455443


Q ss_pred             HH---HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          304 EA---VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       304 aa---L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                      +.   |+ .|..+|-+-......+.+..+.+..++|+++-
T Consensus       221 ~~~~~Le~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~d  260 (433)
T 3rcy_A          221 RLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRIPVATG  260 (433)
T ss_dssp             HHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHSSSCEEEC
T ss_pred             HHHHHhhhcCCCEEECCCChhhHHHHHHHHhccCCCEEec
Confidence            33   33 38999976543321256777778889998873

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=81.92  E-value=10  Score=38.02  Aligned_cols=81  Identities=19%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe------
Q 038230          235 AAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD------  295 (480)
Q Consensus       235 ~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID------  295 (480)
                      +-.+.|++..++|.|.|+|.+.-             .|...-.-|.+...+.+..+|+++++... .+.||+|.      
T Consensus       153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG-~d~pV~vRls~~~~  231 (349)
T 3hgj_A          153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVP-RELPLFVRVSATDW  231 (349)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSC-TTSCEEEEEESCCC
T ss_pred             HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhc-CCceEEEEeccccc
Confidence            34456777889999999998642             22221234566677778889999997632 25666552      


Q ss_pred             ---CCCHHH----HHHHHHcCCCEEecC
Q 038230          296 ---TFYSKV----ASEAVGKGAHIVNDV  316 (480)
Q Consensus       296 ---T~~~~v----~~aaL~~G~~iINdV  316 (480)
                         .++.+.    +++.-++|+++|.-.
T Consensus       232 ~~~g~~~~~~~~la~~L~~~Gvd~i~vs  259 (349)
T 3hgj_A          232 GEGGWSLEDTLAFARRLKELGVDLLDCS  259 (349)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence               223333    444445699998844

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=81.91  E-value=3.5  Score=42.48  Aligned_cols=64  Identities=17%  Similarity=0.310  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEEe
Q 038230          237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIVN  314 (480)
Q Consensus       237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iIN  314 (480)
                      .++++.++++|+|+|-++.....|           ..+...|+.+++.   .++||.+ ....++.++.+.++|+|.|-
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~-----------~~~~e~I~~ik~~---~~i~Vi~g~V~t~e~A~~a~~aGAD~I~  210 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHS-----------LNIIRTLKEIKSK---MNIDVIVGNVVTEEATKELIENGADGIK  210 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSB-----------HHHHHHHHHHHTT---CCCEEEEEEECSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCc-----------ccHHHHHHHHHhc---CCCeEEEeecCCHHHHHHHHHcCCCEEE
Confidence            568899999999999886321111           1233456677765   2677776 67789999999999999986

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=81.41  E-value=4.7  Score=40.16  Aligned_cols=98  Identities=22%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEA  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aa  305 (480)
                      .+.+++.+.++++.+.|++.|-+-..     .+.|.....-.++++.+   +++..++.    ++++.+=....+.++.+
T Consensus       169 ~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~---~~~~A~~~----g~~v~~H~~~~~~i~~~  241 (423)
T 3feq_A          169 DGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRA---IVDEAEAA----NTYVMAHAYTGRAIARA  241 (423)
T ss_dssp             CSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHH---HHHHHHHT----TCCEEEEEEEHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHH---HHHHHHHC----CCeEEEEeCChHHHHHH
Confidence            46789999999999999998887532     11121121222355554   45666665    88999988889999999


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      +++|++.|--...  .+++.++.+++.++.++
T Consensus       242 l~~g~~~i~H~~~--~~~~~~~~l~~~gv~~~  271 (423)
T 3feq_A          242 VRCGVRTIEHGNL--VDEAAAKLMHEHGAFVV  271 (423)
T ss_dssp             HHHTCCEEEEEEE--CCHHHHHHHHHHTCEEE
T ss_pred             HHcCCCEEeccCc--CCHHHHHHHHHCCCccc
Confidence            9999987764432  36788999999998875

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=81.39  E-value=11  Score=38.59  Aligned_cols=108  Identities=15%  Similarity=0.120  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEe--CCCC-------------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDI--GAQS-------------------TRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDI--G~eS-------------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      .++++..+.|++++++|-..+-+  |...                   ..|+....+..+++++....++++++... .+
T Consensus       142 ~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G-~d  220 (418)
T 3r4e_A          142 SDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYG-FD  220 (418)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHC-SS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcC-CC
Confidence            46899999999999999998865  4310                   00111112333456666666777776532 37


Q ss_pred             CeEEEeCC---CHHHHHHH---HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230          290 KLVSVDTF---YSKVASEA---VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       290 ~pISIDT~---~~~v~~aa---L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm  339 (480)
                      ++|.+|..   +++.+.+.   |+ .|..+|-.-......+.+..+.+..++|+++-
T Consensus       221 ~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~d  277 (418)
T 3r4e_A          221 HHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDCTPAENQEAFRLVRQHTVTPLAVG  277 (418)
T ss_dssp             SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEESCSCCSSGGGGHHHHHHCCSCEEEC
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEECCCCccCHHHHHHHHhcCCCCEEEc
Confidence            89999964   45544333   32 38999976543322367888888889998873

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=81.32  E-value=35  Score=33.38  Aligned_cols=107  Identities=14%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeCC-C
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRP--------MATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDTF-Y  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP--------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT~-~  298 (480)
                      |.+++.+.+.++++++.||.-+=|=.+..-|        +...++.++-.+|+.-++++-..    .+..|-  -|++ .
T Consensus        86 yg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~----~~~~i~aRtda~~a  161 (290)
T 2hjp_A           86 FGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARAD----RDFVVIARVEALIA  161 (290)
T ss_dssp             TSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSS----TTSEEEEEECTTTT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhccc----CCcEEEEeehHhhc
Confidence            5688999999999999999998875543111        34456665556666555544322    233332  3665 2


Q ss_pred             ----HHHHHHHHH---cCCCEEecCCC-CCCCchHHHHHHhcC--CCEEEEcC
Q 038230          299 ----SKVASEAVG---KGAHIVNDVSA-GQLDPDMYKVVAGLK--VPYVAMHM  341 (480)
Q Consensus       299 ----~~v~~aaL~---~G~~iINdVsg-~~~d~~m~~l~~~~~--~~vVlmh~  341 (480)
                          .+.++.|..   +||++|- +-+ -...+++..++++.+  +|+++...
T Consensus       162 ~~g~~~ai~Ra~ay~eAGAd~i~-~e~~~~~~~~~~~i~~~~~~~vP~i~n~~  213 (290)
T 2hjp_A          162 GLGQQEAVRRGQAYEEAGADAIL-IHSRQKTPDEILAFVKSWPGKVPLVLVPT  213 (290)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEE-ECCCCSSSHHHHHHHHHCCCSSCEEECGG
T ss_pred             cccHHHHHHHHHHHHHcCCcEEE-eCCCCCCHHHHHHHHHHcCCCCCEEEecc
Confidence                566655544   5999997 444 332367888888888  89887543

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=80.52  E-value=12  Score=38.23  Aligned_cols=106  Identities=9%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEe--CCCCC-----------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          231 QSVEAAVSQVRLMISEGADMIDI--GAQST-----------RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDI--G~eSt-----------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      .++++..+.|++++++|-..+-+  |..+.           .|+ ...+.++++++....++++++... .+++|.+|..
T Consensus       132 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~d~~~v~avR~a~G-~d~~l~vDan  209 (401)
T 3sbf_A          132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEG-SYYDQDQYMDNTLTMFKSLREKYG-NQFHILHDVH  209 (401)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSS-EECCHHHHHHHHHHHHHHHHHHHT-TSSEEEEECT
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccc-ccccchHHHHHHHHHHHHHHHHcC-CCCEEEEECC
Confidence            46899999999999999998775  43211           112 234555667777777788887532 3789999964


Q ss_pred             ---CHHHHHHH---HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          298 ---YSKVASEA---VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       298 ---~~~v~~aa---L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                         +++.+.+.   |+ .|..+|-.-......+.+..+.+..++|++.
T Consensus       210 ~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPIa~  257 (401)
T 3sbf_A          210 ERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGL  257 (401)
T ss_dssp             TCSCHHHHHHHHHHHGGGCCSCEECSSCTTCGGGHHHHHTTCCCCEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCEEECCCChhHHHHHHHHHhhCCCCEEe
Confidence               45444333   32 3888887654332226678888888888876

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=80.49  E-value=3.7  Score=41.36  Aligned_cols=103  Identities=14%  Similarity=0.170  Sum_probs=63.1

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-  296 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-  296 (480)
                      =++|+-|.+||  .+.+++++.|+.+.+. +|+|++-...+.+......+...+    +.++.+++.   .++||..-- 
T Consensus       216 Rls~~~~~~~g--~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~----~~~~~ir~~---~~iPVi~~Gg  285 (343)
T 3kru_A          216 RVSADDYMEGG--INIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQV----KYAETIKKR---CNIKTSAVGL  285 (343)
T ss_dssp             EEECCCSSTTS--CCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTH----HHHHHHHHH---HTCEEEEESS
T ss_pred             EeechhhhccC--ccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceee----hHHHHHHHh---cCcccceeee
Confidence            45666677776  5789999999999999 999999211222210011111111    233444543   256766633 


Q ss_pred             -CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHH
Q 038230          297 -FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVA  330 (480)
Q Consensus       297 -~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~  330 (480)
                       ++++.++++|+.| +|+|-=-.+.-.+|.+..-++
T Consensus       286 i~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          286 ITTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             CCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             eeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence             5799999999997 898864443333566655544

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=80.31  E-value=49  Score=33.04  Aligned_cols=95  Identities=16%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CCHHHHHHH--
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FYSKVASEA--  305 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~~~v~~aa--  305 (480)
                      .++++..++|+++++.|-..+-+-..        .+.+++++++..+-+.+-     .+++|.+|.   ++++.+.+.  
T Consensus       139 ~~~e~~~~~a~~~~~~G~~~~K~KvG--------~~~~~d~~~v~avR~~~g-----~~~~l~vDaN~~~~~~~A~~~~~  205 (368)
T 3q45_A          139 DEPHKMAADAVQIKKNGFEIIKVKVG--------GSKELDVERIRMIREAAG-----DSITLRIDANQGWSVETAIETLT  205 (368)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEECC--------SCHHHHHHHHHHHHHHHC-----SSSEEEEECTTCBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEec--------CCHHHHHHHHHHHHHHhC-----CCCeEEEECCCCCChHHHHHHHH
Confidence            47899999999999999999887531        135677777644333332     278999995   345444333  


Q ss_pred             -HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          306 -VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       306 -L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                       |+ .|..+|-+-......+.+..+.++.++|+++
T Consensus       206 ~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPIa~  240 (368)
T 3q45_A          206 LLEPYNIQHCEEPVSRNLYTALPKIRQACRIPIMA  240 (368)
T ss_dssp             HHGGGCCSCEECCBCGGGGGGHHHHHHTCSSCEEE
T ss_pred             HHhhcCCCEEECCCChhHHHHHHHHHhhCCCCEEE
Confidence             32 3888887644322125678888888999886

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=80.30  E-value=22  Score=33.75  Aligned_cols=89  Identities=22%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             HHHHHHHHcCCCEE--EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC----------CCHHHH---
Q 038230          238 SQVRLMISEGADMI--DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT----------FYSKVA---  302 (480)
Q Consensus       238 ~~A~~~v~~GAdiI--DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT----------~~~~v~---  302 (480)
                      +.+++.++.||+.|  .+...+       .+.++-++.+..+++..++.    ++|+-+-+          .+++.+   
T Consensus       103 ~~v~~a~~~Ga~~v~~~l~~~~-------~~~~~~~~~~~~v~~~~~~~----g~~viv~~~~~G~~l~~~~~~~~~~~~  171 (273)
T 2qjg_A          103 TTVEEAIRMGADAVSIHVNVGS-------DEDWEAYRDLGMIAETCEYW----GMPLIAMMYPRGKHIQNERDPELVAHA  171 (273)
T ss_dssp             SCHHHHHHTTCSEEEEEEEETS-------TTHHHHHHHHHHHHHHHHHH----TCCEEEEEEECSTTCSCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEEecCC-------CCHHHHHHHHHHHHHHHHHc----CCCEEEEeCCCCcccCCCCCHhHHHHH
Confidence            35566778999999  543221       12333344455555555543    56666544          344333   


Q ss_pred             -HHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEE
Q 038230          303 -SEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       303 -~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlm  339 (480)
                       +.|.+.|+++|- ++.. .+ +.+.++++..++|+|+.
T Consensus       172 a~~a~~~Gad~i~-~~~~-~~~~~l~~i~~~~~ipvva~  208 (273)
T 2qjg_A          172 ARLGAELGADIVK-TSYT-GDIDSFRDVVKGCPAPVVVA  208 (273)
T ss_dssp             HHHHHHTTCSEEE-ECCC-SSHHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHcCCCEEE-ECCC-CCHHHHHHHHHhCCCCEEEE
Confidence             667778999875 3321 24 34556666678898873

>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*

Probab=80.25  E-value=5.9  Score=41.98  Aligned_cols=125  Identities=11%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHH-cCCC-EEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcC
Q 038230          233 VEAAVSQVRLMIS-EGAD-MIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKG  309 (480)
Q Consensus       233 ~e~a~~~A~~~v~-~GAd-iIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G  309 (480)
                      .+.+.+..+++.+ .|.| ++-|...||.|..+..+. -..++.+.   ++|.+.    +-.|+   ...--+.+|+++|
T Consensus       220 ve~ir~DIr~Fk~~~~ldrvVVlwtAsTE~~~~~~~g~~~t~~~l~---~ai~~~----~~eis---pS~~YA~AAl~aG  289 (533)
T 1p1j_A          220 LQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTMENLL---QSIKND----HEEIA---PSTIFAAASILEG  289 (533)
T ss_dssp             HHHHHHHHHHHHHHTTCSCEEEEECSCCCCCCCCCTTTTSSHHHHH---HHHHTT----CTTCC---HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEeCcCccCCCCCccccccCHHHHH---HHHhcC----CccCC---hHHHHHHHHHhcC
Confidence            4555556677766 7855 888899999997764431 12344443   444443    21222   3334567889999


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      +..||-.-.....|.+.+++.+.|++++-=.... .+|           ++.      .-+++.+...|+....++
T Consensus       290 ~~fIN~sP~~t~~P~~~elae~~gvpI~GDD~KS-GqT-----------~lk------svLa~~l~~RGlkv~~~~  347 (533)
T 1p1j_A          290 VPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKS-GQT-----------KLK------SVLAQFLVDAGIKPVSIA  347 (533)
T ss_dssp             CCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCC-SHH-----------HHH------HHHHHHHHHTTCEEEEEE
T ss_pred             CceeecCCcccCCHHHHHHHHHhCCceecccccc-CCc-----------hhH------HHHHHHHHHcCCceeEEE
Confidence            9999987766667999999999999988633221 111           111      233556678999865554

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=80.23  E-value=9.5  Score=38.71  Aligned_cols=105  Identities=14%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--  297 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--  297 (480)
                      .++..+.|+..+++|.|.|+|++.-             .|...-.-|.+...+.+..+|+++++... .+ ||+|.-.  
T Consensus       166 i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg-~~-~V~vrls~~  243 (376)
T 1icp_A          166 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIG-SD-RVGIRISPF  243 (376)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHC-GG-GEEEEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhc-CC-ceEEEeccc
Confidence            3566677888899999999998742             12111123456777788899999987632 13 6665542  


Q ss_pred             ---------C-----HHHHHHHHHcCCCEEecCCCCC-------CC-chHHHHHHhcCCCEEEE
Q 038230          298 ---------Y-----SKVASEAVGKGAHIVNDVSAGQ-------LD-PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       298 ---------~-----~~v~~aaL~~G~~iINdVsg~~-------~d-~~m~~l~~~~~~~vVlm  339 (480)
                               .     .+.+++.-++|+++|.-..+..       .. +.+..+.+..+.+|+..
T Consensus       244 ~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~  307 (376)
T 1icp_A          244 AHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVA  307 (376)
T ss_dssp             CCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEE
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEe
Confidence                     1     2334444456999997543311       01 22344555577887764

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=80.10  E-value=9.3  Score=35.79  Aligned_cols=97  Identities=11%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEE--eCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eC--CCH----HHH
Q 038230          233 VEAAVSQVRLMISEGADMID--IGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DT--FYS----KVA  302 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiID--IG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT--~~~----~v~  302 (480)
                      .+.-...+++.+++|||.||  +|..+.+-+        +++++...++.+++...  ++++-+  .|  .+.    +.+
T Consensus        69 ~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~--------~~~~~~~~i~~v~~a~~--pv~vKvi~e~~~l~~~~~~~~a  138 (225)
T 1mzh_A           69 TSVKVKEAVEAVRDGAQELDIVWNLSAFKSE--------KYDFVVEELKEIFRETP--SAVHKVIVETPYLNEEEIKKAV  138 (225)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCHHHHHTT--------CHHHHHHHHHHHHHTCT--TSEEEEECCGGGCCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHcCCCEEEEEecHHHHhcC--------ChHHHHHHHHHHHHHhc--CceEEEEEeCCCCCHHHHHHHH
Confidence            34445567888899999999  565332221        23455556777776532  344433  32  333    446


Q ss_pred             HHHHHcCCCEEecCCCCC---CCchHHHHHHhc---CCCEEEE
Q 038230          303 SEAVGKGAHIVNDVSAGQ---LDPDMYKVVAGL---KVPYVAM  339 (480)
Q Consensus       303 ~aaL~~G~~iINdVsg~~---~d~~m~~l~~~~---~~~vVlm  339 (480)
                      +.+.++|+|.|---+|..   ...+.+..+++.   ++||+..
T Consensus       139 ~~a~eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~  181 (225)
T 1mzh_A          139 EICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKAS  181 (225)
T ss_dssp             HHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEE
T ss_pred             HHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            666777999994222221   134555555553   5777764

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=80.02  E-value=2.9  Score=41.51  Aligned_cols=48  Identities=17%  Similarity=0.032  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHcC
Q 038230          233 VEAAVSQVRLMISEGADMIDIGAQSTRPM-ATKISAEKELERLIPVLEAVLTM  284 (480)
Q Consensus       233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~-a~~v~~~eE~~rl~~vi~~l~~~  284 (480)
                      .++..+.|++. ++|+|.|+|++.|...+ ..   ..+..+.+..+++.+++.
T Consensus       152 ~~~~~~aa~~~-~~g~d~iein~~sP~~~g~~---~~~~~~~~~~il~~vr~~  200 (336)
T 1f76_A          152 KDDYLICMEKI-YAYAGYIAINISSPNTPGLR---TLQYGEALDDLLTAIKNK  200 (336)
T ss_dssp             HHHHHHHHHHH-GGGCSEEEEECCCSSSTTGG---GGGSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hccCCEEEEEccCCCCCCcc---cccCHHHHHHHHHHHHHH
Confidence            56666666655 45999999998653321 11   112245555666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1ajza_	282	c.1.21.1 (A:) Dihydropteroate synthetase {Escheric	2e-67
d1eyea_	270	c.1.21.1 (A:) Dihydropteroate synthetase {Mycobact	1e-64
d1tx2a_	273	c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus	9e-63
d1ad1a_	264	c.1.21.1 (A:) Dihydropteroate synthetase {Staphylo	7e-60
d1cbka_	160	d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin p	7e-25
d1f9ya_	158	d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin p	6e-22
d1f6ya_	262	c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/ir	7e-21
d3bofa1	260	c.1.21.2 (A:301-560) Cobalamin-dependent methionin	1e-09

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} Length = 282

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

 Score =  216 bits (550), Expect = 2e-67
 Identities = 106/288 (36%), Positives = 166/288 (57%), Gaps = 13/288 (4%)

Query: 194 MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDI 253
           MK  L       D S    VMGILN+TPDSFSDGG   S+  AV    LMI+ GA +ID+
Sbjct: 1   MK--LFAQGTSLDLS-HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDV 57

Query: 254 GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIV 313
           G +STRP A ++S E+EL+R+IPV+EA+    E+    +SVDT   +V  E+   GAHI+
Sbjct: 58  GGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHII 114

Query: 314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRD 373
           ND+ +      +        +P   MHM+G+P TMQ  E  +YDDV  +V      ++  
Sbjct: 115 NDIRSLSEPGALEAAAET-GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIAR 171

Query: 374 AELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRP 430
            E +GI   ++++DPG GF K   HN  +L  L      + P+L+G SRK  +G++ N  
Sbjct: 172 CEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG 231

Query: 431 SADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
              ER   ++A      + GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 232 -PSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKEN 278

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 270

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  208 bits (529), Expect = 1e-64
 Identities = 105/271 (38%), Positives = 158/271 (58%), Gaps = 13/271 (4%)

Query: 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE 270
             VMG+LN+T DSFSDGG +  ++ AV     M + GA ++D+G +S+RP AT++    E
Sbjct: 2   VQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVE 61

Query: 271 LERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA 330
             R+IPV++        +G  VS+DT  + VA  A+  GA +VNDVS G+ DP M  ++A
Sbjct: 62  TSRVIPVVK----ELAAQGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLA 117

Query: 331 GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390
              VP+V MH R   +   +    +Y +V  +V ++L + V DA  +G+   R+++DPGL
Sbjct: 118 EADVPWVLMHWRAVSADTPHVPV-RYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGL 176

Query: 391 GFSKKAEH---NLDILLGLAASHAPILIGPSRKRFLGEICNRPSA-----DERDPATIAS 442
           GF+K A+H    L  L  L A+  P+L+G SRKRFLG +   P       D RD AT   
Sbjct: 177 GFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVI 236

Query: 443 ITAGVLGGANIVRVHNIRDNLDAVKLCDSML 473
                L GA  VRVH++R ++DA+K+ ++ +
Sbjct: 237 SALAALHGAWGVRVHDVRASVDAIKVVEAWM 267

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} Length = 273

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

 Score =  203 bits (517), Expect = 9e-63
 Identities = 99/281 (35%), Positives = 165/281 (58%), Gaps = 16/281 (5%)

Query: 198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS 257
           L  G    + + KT +MGILN+TPDSFSDGG +  V+AAV   + M  EGA +IDIG +S
Sbjct: 6   LRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGES 65

Query: 258 TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS 317
           TRP   K+S E+E++R++P+++A   + +     +S+DT+ ++VA +A+  GAHI+ND+ 
Sbjct: 66  TRPGFAKVSVEEEIKRVVPMIQA---VSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIW 122

Query: 318 AGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377
             + +P + +V A   VP + MH R + +      ++  D          Y  ++ A+ +
Sbjct: 123 GAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADL---------YDSIKIAKDA 173

Query: 378 GIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADE 434
           G+    II+DPG+GF+K  E NL+ +  L   +    P+L+G SRK F+G + + P  +E
Sbjct: 174 GVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPV-EE 232

Query: 435 RDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
           R   T A++  G+  G   VRVH++++     K+ D+M+ +
Sbjct: 233 RLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 273

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} Length = 264

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  195 bits (496), Expect = 7e-60
 Identities = 102/267 (38%), Positives = 151/267 (56%), Gaps = 17/267 (6%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           KT +MGILN+TPDSFSDGGKF +VE+AV++V+ M+ EGAD+ID+G  STRP    I+ E+
Sbjct: 2   KTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE 61

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
           EL R++P    V+         +SVDTF S+VA   +  G  I+ND  AG  D  M++VV
Sbjct: 62  ELNRVLP----VVEAIVGFDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVV 117

Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
           A      V MH              + + V +++ + L ++   A+++GIP+ +I +DPG
Sbjct: 118 AKYDAEIVLMHNGNGN---------RDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 168

Query: 390 LGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRP-SADERDPATIASITA 445
           +GF+K      +++  L    A   P+L+  SRKRF  E+     +  ERD  T A+   
Sbjct: 169 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 228

Query: 446 GVLGGANIVRVHNIRDNLDAVKLCDSM 472
           G++ G   VRVHN+  N    K  D +
Sbjct: 229 GIMKGVRAVRVHNVELNAKLAKGIDFL 255

>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId: 727]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
family: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
domain: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
species: Haemophilus influenzae [TaxId: 727]

 Score = 98.3 bits (244), Expect = 7e-25
 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
             IA+GSN+   +   + AL+ + +L   ++      Y+++P    DQP ++N+  +  T
Sbjct: 4   AYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIET 63

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPF 164
           +L P +LL  L++IE + GR    R G R +DLDIL YG   I ++ LT+PH  +  R F
Sbjct: 64  ELSPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREF 123

Query: 165 VVAPLLDL 172
           V+ PL ++
Sbjct: 124 VIVPLFEI 131

>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
family: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
domain: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
species: Escherichia coli [TaxId: 562]

 Score = 89.9 bits (222), Expect = 6e-22
 Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 46  VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVT 104
             IA+GSN+   L   N AL+ +  +   +I      Y T P    DQP +LN+AV   T
Sbjct: 3   AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALET 62

Query: 105 KLGPHELLGVLKKIEKDMGRTNGIRH-GPRPIDLDILFYGRFSIHSDTLTVPHERIWERP 163
            L P ELL   ++IE   GR       GPR +DLDI+ +G   I+++ LTVPH  +  R 
Sbjct: 63  SLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRG 122

Query: 164 FVVAPLLDL 172
           F++ PL ++
Sbjct: 123 FMLWPLFEI 131

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} Length = 262

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

 Score = 89.8 bits (222), Expect = 7e-21
 Identities = 33/264 (12%), Positives = 76/264 (28%), Gaps = 24/264 (9%)

Query: 217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP 276
           +N          + +         R     GA  +D+                 +E L+ 
Sbjct: 8   INGMFGDIKRAIQERDPAPVQEWARRQEEGGARALDLNVG-----PAVQDKVSAMEWLVE 62

Query: 277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPD-MYKVVAGLKVP 335
           V + V  +       +      +  A     K   ++N  +A +   + ++ +       
Sbjct: 63  VTQEVSNLTLC----LDSTNIKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAA 118

Query: 336 YVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKK 395
            + + M        ++  L +              V  A+  G+P   + IDP +  +  
Sbjct: 119 LIGLTMNKTGIPKDSDTRLAF----------AMELVAAADEFGLPMEDLYIDPLILPANV 168

Query: 396 AEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--I 453
           A+ +   +L        +L  P+ K  LG      +   R       +   +  G    I
Sbjct: 169 AQDHAPEVLK-TLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAI 227

Query: 454 VRVHNIRDNLDAVKLCDSMLTRRK 477
               +    ++     + +L +  
Sbjct: 228 ADACDEA-LIETAATAEILLNQTV 250

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 30/276 (10%), Positives = 89/276 (32%), Gaps = 47/276 (17%)

Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
           + +  G             +  + E  + + +  + +GA+++D+           I ++ 
Sbjct: 21  RINPAG-----RKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVNFG--------IESQI 67

Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEA--VGKGAHIVNDVSAGQLDPD-MY 326
           ++  +  +++ +   P +    +S+D     +   A     G  + N     + + +   
Sbjct: 68  DVRYVEKIVQTL---PYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKI 124

Query: 327 KVVAGLKVPYVAMHM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385
            ++       + + M +  P + +           K+   +    +         + R+I
Sbjct: 125 NLLKKYGGTLIVLLMGKDVPKSFEE---------RKEYFEKALKILE----RHDFSDRVI 171

Query: 386 IDPGLGFSKKAEHNLDILLGLAA---SHAPILIGPSRKRFLGEICNRPSADERDPATIAS 442
            DPG+         +++L  +           +G S   F           +R     A 
Sbjct: 172 FDPGVLPLGAEGKPVEVLKTIEFISSKGFNTTVGLSNLSF--------GLPDRSYYNTAF 223

Query: 443 ITAGVLGGAN--IVRVHNIRDNLDAVKLCDSMLTRR 476
           +  G+  G +  I+   +    +  +     +L ++
Sbjct: 224 LVLGISKGLSSAIMNPLD-ETLMKTLNATLVILEKK 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	100.0
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	100.0
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	100.0
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	100.0
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	100.0
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	100.0
d1cbka_	160	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinas	100.0
d1f9ya_	158	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinas	100.0
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	96.46
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	96.42
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	96.38
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.37
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.23
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	96.07
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	95.93
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	94.71
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	94.35
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	93.35
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	93.28
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	93.04
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	92.32
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	92.19
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	91.13
d1o60a_	281	3-deoxy-D-manno-octulosonate 8-phosphate synthase	89.82
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	88.84
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	88.39
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	88.13
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	88.05
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	87.97
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	86.81
d1j93a_	343	Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic	85.54
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	84.82
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	84.7
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	83.44
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	83.02
d1r3sa_	356	Uroporphyrinogen decarboxylase, UROD {Human (Homo	82.96
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	82.6
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	81.97
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	81.85
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	80.37
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	80.02

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-80  Score=611.68  Aligned_cols=271  Identities=38%  Similarity=0.645  Sum_probs=256.9

Q ss_pred             ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038230          200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE  279 (480)
Q Consensus       200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~  279 (480)
                      .+++.++++ +|+||||||+|||||||||+|.+.++|+++|++|+++|||||||||||||||+++|+++|||+|+.|+|+
T Consensus         5 ~~~~~l~l~-~P~IMGIlNvTPDSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~   83 (282)
T d1ajza_           5 AQGTSLDLS-HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVE   83 (282)
T ss_dssp             ETTEEEETT-SCEEEEEEECCTTTSTTTTCSSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHH
T ss_pred             ECCEEecCC-CCeEEEEEeCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHH
Confidence            456677885 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhH
Q 038230          280 AVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDV  359 (480)
Q Consensus       280 ~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v  359 (480)
                      .|++.   .+++||||||+++|+++||++|++|||||+|+. +++|+++++++++++|+||++|.|++|+..+  .|+++
T Consensus        84 ~l~~~---~~~~iSIDT~~~eVa~~al~~Ga~iINDvsg~~-~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~--~y~dv  157 (282)
T d1ajza_          84 AIAQR---FEVWISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAP--KYDDV  157 (282)
T ss_dssp             HHHHH---CCCEEEEECCCHHHHHHHHHTTCCEECCTTTTC-STTHHHHHHHHTCCEEEECCSSCTTCCSCCC--CCSCH
T ss_pred             HHhhc---ccceEEEEecChHHHHHHHhcCceEEechhhcc-cchhHHHhhccCceEEEeccCCCccccccCC--cccch
Confidence            99865   378999999999999999999999999999876 8999999999999999999999999999865  47899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCccc
Q 038230          360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERD  436 (480)
Q Consensus       360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~  436 (480)
                      +.++.++|.++++.|.++||++++||+|||+||+|+.+||+++++++   +.+++|+|+|+|||||++.+++.+ +++|+
T Consensus       158 ~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~PiLvG~SRKsfi~~~~~~~-~~~R~  236 (282)
T d1ajza_         158 FAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSERL  236 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHHHHHTCC-GGGCH
T ss_pred             hhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcCCChhhhHHHHhhcchhhccccceEEeccHHHHHHHHhCCC-hhhhc
Confidence            99999999999999999999999999999999999999999999998   467999999999999999999985 78999


Q ss_pred             HHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhhhc
Q 038230          437 PATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRKS  478 (480)
Q Consensus       437 ~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~~~  478 (480)
                      ++|++++++|+.+||+|+|||||+|+++++++++++++.+.+
T Consensus       237 ~~T~a~~~~a~~~Ga~iiRVHdV~e~~~a~~v~~ai~~~~~~  278 (282)
T d1ajza_         237 SGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKEN  278 (282)
T ss_dssp             HHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHHTSTT
T ss_pred             hhHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999877654

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.6e-77  Score=588.83  Aligned_cols=261  Identities=41%  Similarity=0.666  Sum_probs=234.1

Q ss_pred             CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230          210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG  289 (480)
Q Consensus       210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~  289 (480)
                      +|+||||||+|||||||||+|++.++|+++|++|+++|||||||||||||||++++|++|||+|+.|+++.+++.    +
T Consensus         1 p~~IMGIlN~TpDSFsdgg~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~----~   76 (270)
T d1eyea_           1 PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ----G   76 (270)
T ss_dssp             CCEEEEEEECSCCTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT----T
T ss_pred             CCcEEEEEeCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeeccc----c
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999986    7


Q ss_pred             CeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          290 KLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       290 ~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      ++||||||+|+|+++||++|++|||||+|++.|++|++++++++++||+||++|.|.+|+.. ...|++++.++..+|.+
T Consensus        77 ~~iSIDT~~~~Va~~al~~Ga~iINDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~-~~~~~~~~~~i~~~~~~  155 (270)
T d1eyea_          77 ITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHV-PVRYGNVVAEVRADLLA  155 (270)
T ss_dssp             CCEEEECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTS-CCCCSSHHHHHHHHHHH
T ss_pred             eeechHhhhHHHHHHHHhcCCeEEEeccccccchhHHhhhhhcccceeeeeccccccccccc-cccccchhhhhhhHHHH
Confidence            88999999999999999999999999999988899999999999999999999999888763 34678999999999999


Q ss_pred             HHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCC-----cCcccHHHHH
Q 038230          370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPS-----ADERDPATIA  441 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~-----~~~r~~~t~a  441 (480)
                      +++.+.++||++++||+|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||.+++.++     +++|+++|++
T Consensus       156 ~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~lL~~l~~~~~~g~PiLvG~SRKsfig~~~~~~~~~~~~~~eR~~~Tla  235 (270)
T d1eyea_         156 SVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAV  235 (270)
T ss_dssp             HHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHTCCSSSCCCCGGGGHHHHHH
T ss_pred             HHHHHHhccccceEEEEccccccCcccchHHHHHHHHHhhccCCCceEEeehhhHHHHHHhcCCccccCChhhhhHHHHH
Confidence            9999999999999999999999999999999999998   4689999999999999999998642     5689999999


Q ss_pred             HHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          442 SITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       442 ~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      ++++|+.+||+|+|||||+|+++|+++++||++.
T Consensus       236 ~~~~a~~~Ga~iiRvHDV~e~~~ai~v~~Ai~~~  269 (270)
T d1eyea_         236 ISALAALHGAWGVRVHDVRASVDAIKVVEAWMGA  269 (270)
T ss_dssp             HHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCEEEeCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999764

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.8e-76  Score=582.77  Aligned_cols=254  Identities=41%  Similarity=0.654  Sum_probs=240.1

Q ss_pred             CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230          209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME  288 (480)
Q Consensus       209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~  288 (480)
                      +||+||||||+|||||||||+|.+.++|+++|++|+++|||||||||||||||+++|+++|||+|+.|+|+.+++.    
T Consensus         1 ~~t~iMGIlN~TpDSFsdgg~~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~----   76 (264)
T d1ad1a_           1 TKTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGF----   76 (264)
T ss_dssp             CCCEEEEEEECCGGGCSSTTTTCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTS----
T ss_pred             CCCcEEEEEeCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhccc----
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999864    


Q ss_pred             CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230          289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY  368 (480)
Q Consensus       289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~  368 (480)
                      +++||||||+|+|+++||++|++|||||+++..|++|++++++|++++|+||+++.|++         .+++.++..+|.
T Consensus        77 ~~~iSIDT~~~eVa~~al~~Ga~iINDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~---------~~~~~~v~~~~~  147 (264)
T d1ad1a_          77 DVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRD---------EPVVEEMLTSLL  147 (264)
T ss_dssp             SSEEEEECSCHHHHHHHHHTTCCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCC---------SCHHHHHHHHHH
T ss_pred             CcccchhhhhHHHHHHHHhcCCcEeeccccccccccHHHHHhhcCcceeeeeecccccc---------CccchhhhhHHH
Confidence            89999999999999999999999999999877799999999999999999999877754         356778899999


Q ss_pred             HHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCC-CcCcccHHHHHHHH
Q 038230          369 SKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRP-SADERDPATIASIT  444 (480)
Q Consensus       369 ~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~-~~~~r~~~t~a~~~  444 (480)
                      ++++.+.++||++++|++|||+||+|+.+||+++|+++   +.+|+|+|+|+|||||||+++|.. ++.+|+.+|+++++
T Consensus       148 ~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~~~g~PiLiG~SRKsfig~l~g~~~~~~~r~~~t~a~~~  227 (264)
T d1ad1a_         148 AQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTA  227 (264)
T ss_dssp             HHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEECCTTSHHHHTTSSSCCCGGGGHHHHHHHHH
T ss_pred             HHHHHHHhhccccceEEeccCcCccccchhHHHHHHHHHHhhccCCceeeeccHHHHHHHHhCCCCChHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999998   468999999999999999999742 46799999999999


Q ss_pred             HHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230          445 AGVLGGANIVRVHNIRDNLDAVKLCDSMLTR  475 (480)
Q Consensus       445 ~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~  475 (480)
                      +|+.+||+|+|||||+|+++++++++++++.
T Consensus       228 ~a~~~Ga~iiRvHDV~e~~~~~~v~~~l~~~  258 (264)
T d1ad1a_         228 YGIMKGVRAVRVHNVELNAKLAKGIDFLKEN  258 (264)
T ss_dssp             HHHHHTCCEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEeCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999864

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=100.00  E-value=1e-76  Score=587.39  Aligned_cols=265  Identities=38%  Similarity=0.659  Sum_probs=248.4

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~  276 (480)
                      .|++|++.++++.+|.||||||+|||||||||+|.+.++|+++|++|+++|||||||||||||||+++++++||++|+.|
T Consensus         5 ~~~~g~~~~~~~~~~~iMGIlNiTpDSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p   84 (273)
T d1tx2a_           5 DLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVP   84 (273)
T ss_dssp             CEEETTEEECSSSSCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHH
T ss_pred             EEEeCCEEeCCCCCceEEEEEeCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhch
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccch
Q 038230          277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY  356 (480)
Q Consensus       277 vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~  356 (480)
                      +|+.+.+.   .+++||||||+|+|+++||++|++|||||+|+..|++|+.+++++++++|+||+++.|.         |
T Consensus        85 ~i~~~~~~---~~~~iSIDT~~~~Va~~al~~G~~iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~---------~  152 (273)
T d1tx2a_          85 MIQAVSKE---VKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMN---------Y  152 (273)
T ss_dssp             HHHHHHHH---SCSCEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCC---------C
T ss_pred             hHHhhhcc---ceEEEehHHhhHHHHHHHHHcCCeEEeccccccchhHHHHHHHhhcccccccccccccc---------c
Confidence            99999875   37899999999999999999999999999999878999999999999999999987764         4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcC
Q 038230          357 DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSAD  433 (480)
Q Consensus       357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~  433 (480)
                      .+++.++..+|.++++.+.++||++++|++|||+||+|+.+||+++++++   +.+|+|+|+|+|||||++++++.+ ++
T Consensus       153 ~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~~~g~PilvG~SRKsfig~~~~~~-~~  231 (273)
T d1tx2a_         153 RNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLP-VE  231 (273)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCC-GG
T ss_pred             ccccchhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHHHHHhhhcccccCCCcEEEEehHHHHHHHHhCCC-HH
Confidence            57788999999999999999999999999999999999999999999998   467999999999999999999986 78


Q ss_pred             cccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHh
Q 038230          434 ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT  474 (480)
Q Consensus       434 ~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~  474 (480)
                      +|+.+|++++++|+.+||+|+|||||+++++|++++++|.+
T Consensus       232 eRl~~Tla~~~~a~~~Ga~ilRvHdV~e~~~al~v~~~l~~  272 (273)
T d1tx2a_         232 ERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIG  272 (273)
T ss_dssp             GCHHHHHHHHHHHHHTTCSEEEESCHHHHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999864

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-44  Score=352.36  Aligned_cols=234  Identities=13%  Similarity=0.214  Sum_probs=206.5

Q ss_pred             CcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC
Q 038230          210 KTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM  287 (480)
Q Consensus       210 ~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~  287 (480)
                      ++.|+| -+|.| +.+|.+..+..+++.++++|++|+++|||+||||.  +.|      .++|.+++.|+++.+++.   
T Consensus        14 ~f~iIGEriN~tg~k~~~~~~~~~d~d~~~~~A~~qv~~GA~iLDIn~--~~~------~~~e~~~m~~li~~l~~~---   82 (260)
T d3bofa1          14 HFVVIGERINPAGRKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVNF--GIE------SQIDVRYVEKIVQTLPYV---   82 (260)
T ss_dssp             SCEEEEEEECCTTCHHHHHHHHTTCSHHHHHHHHHHHHTTCSEEEEEC--SSG------GGSCHHHHHHHHHHHHHH---
T ss_pred             CcEEEEeeCchhhHHHHHHHHHcCCHHHHHHHHHHHHHcCCCEEEeec--CCc------hhhhHHHHHHHHHHHHhc---
Confidence            589999 99999 99999998888999999999999999999999985  334      357899999999999987   


Q ss_pred             CCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcC-CCCCCccccccccchhhHHHHH
Q 038230          288 EGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHM-RGDPSTMQNEENLQYDDVCKQV  363 (480)
Q Consensus       288 ~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~-~g~p~~~~~~~~~~~~~v~~ev  363 (480)
                      +++||||||++|+|+++||++  |++||||||+++.+ +.|++++++|||+||+||+ +|.|+++++            .
T Consensus        83 ~d~PlsIDT~~~~v~eaaLk~~~G~~iINsis~e~~~~~~~~~l~~~yga~vI~l~~d~g~p~~~~e------------r  150 (260)
T d3bofa1          83 SNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEE------------R  150 (260)
T ss_dssp             TCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHH------------H
T ss_pred             CCCCccccCCCHHHHHHHHHHhcCcceEeecccccchHHHHHHHHHhcCCCEEEEecCCcccccHHH------------H
Confidence            599999999999999999998  99999999997644 5689999999999999998 677877654            4


Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHH
Q 038230          364 ASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATI  440 (480)
Q Consensus       364 ~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~  440 (480)
                      .++++++++.++++|+ +++||+|||+||+++.++++++++.+   +.+|+|+++|+|||||     |+|   .|...|.
T Consensus       151 ~~~~~~~~~~~~~~g~-~e~ii~DPli~~~~t~~~~~~~l~~i~~i~~~g~~~~~GlSN~SF-----Glp---~R~~ln~  221 (260)
T d3bofa1         151 KEYFEKALKILERHDF-SDRVIFDPGVLPLGAEGKPVEVLKTIEFISSKGFNTTVGLSNLSF-----GLP---DRSYYNT  221 (260)
T ss_dssp             HHHHHHHHHHHHHTTC-GGGEEEECCCCCGGGTCCHHHHHHHHHHHHHTTCCBCCBGGGGGT-----TCT---THHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-cHhheecccceeccchHHHHHHHHHHHHHHhcCcceeeccccccC-----CCc---chHHHHH
Confidence            4778889999999999 57899999999998888887777766   5789999999999999     885   4889999


Q ss_pred             HHHHHHHHcCCc--EEEcCChHHHHHHHHHHHHHHhhh
Q 038230          441 ASITAGVLGGAN--IVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       441 a~~~~a~~~Ga~--IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      ++.++|+..|.+  |+++|| .+++++++.++++.+..
T Consensus       222 ~Fl~~a~~~Gld~aIvnp~~-~~~~~~i~a~~~ll~~d  258 (260)
T d3bofa1         222 AFLVLGISKGLSSAIMNPLD-ETLMKTLNATLVILEKK  258 (260)
T ss_dssp             HHHHHHHHTTCCEEEECTTC-HHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCCcccCCcCc-HHHHHHHHHHHHHhCCC
Confidence            999999999966  999999 57999999999986543

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=7.9e-44  Score=350.09  Aligned_cols=235  Identities=14%  Similarity=0.157  Sum_probs=194.1

Q ss_pred             EEEE-EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          212 SVMG-ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       212 ~imG-IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      .+.| -+|.|++||+++.+..|++.++++|++|+++||||||||+     +...+++++|+.|+++++   ++.   .++
T Consensus         2 i~iGEriN~~~~~~~~~~~~~d~~~~~~~A~~m~~~GAdiIDIg~-----g~~~~~e~e~~~~vi~~l---~~~---~~v   70 (262)
T d1f6ya_           2 LIIGERINGMFGDIKRAIQERDPAPVQEWARRQEEGGARALDLNV-----GPAVQDKVSAMEWLVEVT---QEV---SNL   70 (262)
T ss_dssp             EEEECCSBTTSHHHHHHHHHTCHHHHHHHHHHHHHHTCSEEEEBC-----C----CHHHHHHHHHHHH---HTT---CCS
T ss_pred             eEEEeccCCCcHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEeCC-----CCCCCCHHHHHHHHHHHH---HHh---hcC
Confidence            4667 6899999999999999999999999999999999999994     555677777777776665   554   489


Q ss_pred             eEEEeCCCHHHHHHHHH--cCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHH
Q 038230          291 LVSVDTFYSKVASEAVG--KGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL  367 (480)
Q Consensus       291 pISIDT~~~~v~~aaL~--~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l  367 (480)
                      ||||||++++|+++||+  +|++|||||||+..+ ..++.++++|+++++.||..  |.++++        ..+++..++
T Consensus        71 piSIDT~~~~v~~aal~~~~Ga~iINdIsg~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~--------~~~~~~~~~  140 (262)
T d1f6ya_          71 TLCLDSTNIKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMN--KTGIPK--------DSDTRLAFA  140 (262)
T ss_dssp             EEEEECSCHHHHHHHHHHCSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCC--SSCSCS--------SHHHHHHHH
T ss_pred             CccccCCccHHHHHHHHhhcccceeechhcccchHHHHHHHHhcCCceEEEEecC--Cccccc--------CHHHHHHHH
Confidence            99999999999999999  699999999997644 44778899999999988763  333322        245677899


Q ss_pred             HHHHHHHHHCCCCCCCEEEecCCCCcc----ChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHH
Q 038230          368 YSKVRDAELSGIPAWRIIIDPGLGFSK----KAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATI  440 (480)
Q Consensus       368 ~~~i~~a~~~Gi~~~~IilDPgiGf~k----~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~  440 (480)
                      +++++.+.++||++++||+|||+||++    +..+|+++++++   +.+|+|+++|+|||||     |.+   .|...|.
T Consensus       141 ~~~~~~~~~~Gi~~~~Ii~DPgi~~~~~~~~~~~~~le~l~~l~~~~~~g~~~l~G~Sn~Sf-----g~~---~r~~ln~  212 (262)
T d1f6ya_         141 MELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQ-----NCQ---NRPLINR  212 (262)
T ss_dssp             HHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGT-----TCS---SHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHhhccceeeeccccchHHHHHHHHHHHHHHHHhhccceeeeeecccc-----ccc---hhhHHHH
Confidence            999999999999999999999996654    456778998888   3579999999999999     664   4777788


Q ss_pred             HHHHHHHHcC--CcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230          441 ASITAGVLGG--ANIVRVHNIRDNLDAVKLCDSMLTRR  476 (480)
Q Consensus       441 a~~~~a~~~G--a~IlRvHdV~e~~~al~~~~ai~~~~  476 (480)
                      ++.++|+..|  +.|+|+||+ +++++++++++|.+.-
T Consensus       213 ~~l~~a~~aGl~~aIv~~~d~-~~~~~~~~~dal~~~d  249 (262)
T d1f6ya_         213 TFLAMAMACGLMSAIADACDE-ALIETAATAEILLNQT  249 (262)
T ss_dssp             HHHHHHHHTTCCEEEECTTCH-HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHccCCccccCcchH-HHHHHHHHHHHHhCCC
Confidence            8889999999  459999996 5789999999997643

>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
family: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
domain: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3.9e-44  Score=327.07  Aligned_cols=138  Identities=33%  Similarity=0.582  Sum_probs=134.2

Q ss_pred             ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHH
Q 038230           43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKD  121 (480)
Q Consensus        43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~  121 (480)
                      |++||||||||+||+.+|+++|++.|.++ +.+++.+|++|+|+|+|+.+||+|+|+|+.++|+++|.+|++.||+||++
T Consensus         1 M~~ayi~lGSNlg~~~~~l~~a~~~L~~~~~~~i~~~S~~y~T~p~g~~~~p~FlN~vv~~~T~l~p~~Ll~~l~~IE~~   80 (160)
T d1cbka_           1 MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENE   80 (160)
T ss_dssp             CEEEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecCcCcHHHHHHHHHHHHHcCCCCcEEEecCceEcccccccchhhhhheeEEEEeCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 55889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          122 MGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       122 ~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      +||.|..||+||+||||||+|++.++++++|+||||++++|+||+.||+||+|+|+||.
T Consensus        81 ~GR~r~~k~~pR~iDLDil~~~~~v~~~~~L~iPHp~~~~R~FVL~PL~ei~P~~~hP~  139 (160)
T d1cbka_          81 QGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPN  139 (160)
T ss_dssp             TTCCBCSTTSCBSCEEEEEEETTCCEESSSCEESCGGGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             hCCcccccccchhHHHHHhccCCeEEecCceEEcccchhhChHHHHHHHHhCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999995

>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
family: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
domain: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-43  Score=320.44  Aligned_cols=136  Identities=38%  Similarity=0.572  Sum_probs=131.3

Q ss_pred             eEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcC
Q 038230           45 EVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMG  123 (480)
Q Consensus        45 ~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~G  123 (480)
                      .||||||||+||+.+|+++|++.|+++ +..++.+|++|+|+|+|+.+||+|+|+|+.++|.++|.+|++.|+.||+++|
T Consensus         2 ~ayi~lGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~p~g~~~qp~F~N~v~~~~T~l~p~~ll~~l~~IE~~~G   81 (158)
T d1f9ya_           2 VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQG   81 (158)
T ss_dssp             EEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEecccccHHHHHHHHHHHHhcCCCCCeEEeecceecccccccccchHhhhhhhhhhccCHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999987 5677899999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230          124 RTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD  180 (480)
Q Consensus       124 R~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~  180 (480)
                      |.|. .+||||+||||||+||+.+++.++|+||||++++|+|||.||+||+|+++||.
T Consensus        82 R~R~~~~~~pRtiDlDIl~~~~~i~~~~~L~iPHp~~~~R~FVL~Pl~ei~p~~~~P~  139 (158)
T d1f9ya_          82 RVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPD  139 (158)
T ss_dssp             CCCCSSTTCCCSCEEEEEEETTCCEECSSCEESCTTGGGCHHHHHHHHHHCTTCBCTT
T ss_pred             CCcccccCCChhHHHHhhhhhceeeeccceecCCcchhhCcHHHHHHHHHCCCCCCCC
Confidence            9996 78999999999999999999999999999999999999999999999999994

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=96.46  E-value=0.11  Score=48.45  Aligned_cols=211  Identities=17%  Similarity=0.147  Sum_probs=131.9

Q ss_pred             ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCCCCCCC
Q 038230          196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQ-----------STRPMATK  264 (480)
Q Consensus       196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~e-----------StrP~a~~  264 (480)
                      +.+.++++.++.+.+|.|.+.+-..-        ..+.+.|.+.+++..++|||.|=.=.-           ...++...
T Consensus         4 ~~~ki~~~~i~~~~~~~iIAEig~NH--------~Gd~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~   75 (280)
T d2zdra2           4 NEFKIGNRSVGYNHEPLIICEIGINH--------EGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNAD   75 (280)
T ss_dssp             CEEEETTEEEETTSCCEEEEEEETTT--------TTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCS
T ss_pred             ceEEECCEEeCCCCCcEEEEEecccc--------CCCHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccc
Confidence            35788999998888999999776664        357899999999999999999875311           00000001


Q ss_pred             CCHHHHH-------HHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          265 ISAEKEL-------ERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       265 v~~~eE~-------~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      .+.-+..       +....+.+..++.    ++.+..-.++.+.++.+.+.|++.+-=.|+.-.+-.+++.+++++-+++
T Consensus        76 ~~~~~~~~~~el~~~~~~~l~~~~k~~----~i~~~~s~fd~~s~~~~~~~~~~~~KIaS~d~~n~~Li~~i~k~~kpii  151 (280)
T d2zdra2          76 VSIYEIMERCALNEEDEIKLKEYVESK----GMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPII  151 (280)
T ss_dssp             SCHHHHHHHHCCCHHHHHHHHHHHHHT----TCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEE
T ss_pred             cccccccccccccchhhHHHHHHHHhc----CCccccccchhhcccccccccccceeccchhccccHhhhhhhhccCcee
Confidence            1111111       1222234444554    8899999999999999999999988766665546789999999999988


Q ss_pred             EEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CCccC-hhHHHHHHHhcc-cCCCcEE
Q 038230          338 AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GFSKK-AEHNLDILLGLA-ASHAPIL  414 (480)
Q Consensus       338 lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf~k~-~~~~~~~lr~l~-~~g~Pil  414 (480)
                      +..-  .. +            .    ++..+.+..+.+.|.+   +++==++ .+... .+.|+..+..++ .+..+ .
T Consensus       152 iStG--~s-~------------~----~EI~~av~~~~~~~~~---~~llhc~s~YPt~~~~~nL~~i~~lk~~f~~~-~  208 (280)
T d2zdra2         152 LSTG--MN-S------------I----ESIKKSVEIIREAGVP---YALLHCTNIYPTPYEDVRLGGMNDLSEAFPDA-I  208 (280)
T ss_dssp             EECT--TC-C------------H----HHHHHHHHHHHHHTCC---EEEEECCCCSSCCGGGCCTTHHHHHHHHCTTS-E
T ss_pred             eccc--cc-c------------h----hHhhhhhhhhhhcccc---ceEEEeeccCccccccccccccceeecccccc-c
Confidence            8442  11 1            1    2334556666667763   5553444 33333 344555565552 23222 3


Q ss_pred             EeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          415 IGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       415 ~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      +|.|         +-.      .+. .++.+|+..||.++--|
T Consensus       209 iG~S---------dH~------~g~-~~~~~Ava~GA~~IEKH  235 (280)
T d2zdra2         209 IGLS---------DHT------LDN-YACLGAVALGGSILERH  235 (280)
T ss_dssp             EEEE---------CCS------SSS-HHHHHHHHTTCCEEEEE
T ss_pred             eeec---------Ccc------cch-hhHHHHHHCCCeEEEEE
Confidence            5877         111      111 23456788999999544

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=96.42  E-value=0.028  Score=52.40  Aligned_cols=204  Identities=14%  Similarity=0.065  Sum_probs=111.8

Q ss_pred             EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230          216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT---KISAEKELERLIPVLEAVLTMPEMEGKL  291 (480)
Q Consensus       216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~---~v~~~eE~~rl~~vi~~l~~~~~~~~~p  291 (480)
                      |+-+|+ |-+.--+..++.++.++.++.+.+.|.+.|++|..+..+...   ........+.+..+    ........+.
T Consensus        10 I~D~TlRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~i~   85 (289)
T d1nvma2          10 ISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAV----AGEISHAQIA   85 (289)
T ss_dssp             EEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHH----HTTCSSSEEE
T ss_pred             EEECCcccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHH----HHhcchhHHH
Confidence            444543 322223456899999999999999999999999655443211   11112223333222    2221112333


Q ss_pred             EEEe--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHH
Q 038230          292 VSVD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE  366 (480)
Q Consensus       292 ISID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~  366 (480)
                      ..++  -...+-+..+.+.|++.+.-....+..   .+.++.+++.+..++...+.. ...       +        .++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~~~-------~--------~~~  149 (289)
T d1nvma2          86 TLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS-HMI-------P--------AEK  149 (289)
T ss_dssp             EEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST-TSS-------C--------HHH
T ss_pred             HHHhhhhhhHHHHHHHHHhcccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeec-ccc-------C--------chh
Confidence            3333  345567888888899987765443321   467888888888777533211 100       0        134


Q ss_pred             HHHHHHHHHHCCCCCCCE-EEec-CCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHH
Q 038230          367 LYSKVRDAELSGIPAWRI-IIDP-GLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASI  443 (480)
Q Consensus       367 l~~~i~~a~~~Gi~~~~I-ilDP-giGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~  443 (480)
                      +.+.++.+.++|++  .| +-|. |....   .+-.++++.++ ..+-.+.+|+-       .  -   .++ +...+-+
T Consensus       150 ~~~~~~~~~~~g~~--~I~l~DT~G~~~P---~~v~~~v~~l~~~~~~~~~i~~H-------~--H---n~~-g~a~an~  211 (289)
T d1nvma2         150 LAEQGKLMESYGAT--CIYMADSGGAMSM---NDIRDRMRAFKAVLKPETQVGMH-------A--H---HNL-SLGVANS  211 (289)
T ss_dssp             HHHHHHHHHHHTCS--EEEEECTTCCCCH---HHHHHHHHHHHHHSCTTSEEEEE-------C--B---CTT-SCHHHHH
T ss_pred             hhHHHHhhccccce--eeeecchhhcccc---hhHHHHHHHHHHHhcccccceee-------e--c---hHH-HHHHHHH
Confidence            55677788888986  67 4476 33333   33344455442 22222334431       1  0   122 2233445


Q ss_pred             HHHHHcCCcEEEcC
Q 038230          444 TAGVLGGANIVRVH  457 (480)
Q Consensus       444 ~~a~~~Ga~IlRvH  457 (480)
                      ..|++.||+++.+.
T Consensus       212 l~A~~~G~~~id~s  225 (289)
T d1nvma2         212 IVAVEEGCDRVDAS  225 (289)
T ss_dssp             HHHHHTTCCEEEEB
T ss_pred             HHHHHhCCcEeecc
Confidence            57888999988653

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=96.38  E-value=0.0088  Score=55.83  Aligned_cols=173  Identities=13%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v  277 (480)
                      +.+++..++- .+|+|.  +-++.         .+.+++++.+++..+.|||++.+=...-.    ....   .+.+...
T Consensus         4 ~~v~~~~~g~-g~pkIc--v~l~~---------~~~~~~~~~~~~~~~~~aD~vE~RlD~l~----~~~~---~~~l~~~   64 (252)
T d1gqna_           4 VTVKNLIIGE-GMPKII--VSLMG---------RDINSVKAEALAYREATFDILEWRVDHFM----DIAS---TQSVLTA   64 (252)
T ss_dssp             EEETTEEETS-SSCEEE--EEECC---------SSHHHHHHHHHHHTTSCCSEEEEEGGGCS----CTTC---HHHHHHH
T ss_pred             EEECCEEecC-CCCEEE--EEeCC---------CCHHHHHHHHHHHhhcCCCEEEEEEcccc----ccCC---HHHHHHH
Confidence            4566666654 578885  44454         57899999999999999999999764321    1112   2344455


Q ss_pred             HHHHHcCCcCCCCeEEE--e------------CCCHHHHHHHHHcC-CCEEecCCCCCCC---chHHHHHHhcCCCEEEE
Q 038230          278 LEAVLTMPEMEGKLVSV--D------------TFYSKVASEAVGKG-AHIVNDVSAGQLD---PDMYKVVAGLKVPYVAM  339 (480)
Q Consensus       278 i~~l~~~~~~~~~pISI--D------------T~~~~v~~aaL~~G-~~iINdVsg~~~d---~~m~~l~~~~~~~vVlm  339 (480)
                      ++.+++..  .++|+-+  =            ..+-+.++.+++.| +++| ||.....+   .++.+.+++.++.+|+.
T Consensus        65 ~~~lr~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~i-DiEl~~~~~~~~~li~~a~~~~~~vI~S  141 (252)
T d1gqna_          65 ARVIRDAM--PDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMI-DLELFTGDADVKATVDYAHAHNVYVVMS  141 (252)
T ss_dssp             HHHHHHHC--TTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEE-EEEGGGCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhc--CCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceE-eccccccHHHHHHHHHHhhcCCCeEEEE
Confidence            56666532  2455443  2            23446788888888 6777 56543322   23556667899999986


Q ss_pred             -cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-----ccCCCc
Q 038230          340 -HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-----AASHAP  412 (480)
Q Consensus       340 -h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-----~~~g~P  412 (480)
                       |+ .++|..                 +.+.+.++++.+.|-+-=+|..=     +++..+++.+++-.     +..+.|
T Consensus       142 ~Hdf~~TP~~-----------------~~l~~~~~~m~~~gaDivKia~~-----a~~~~D~~~ll~~~~~~~~~~~~~P  199 (252)
T d1gqna_         142 NHDFHQTPSA-----------------EEMVSRLRKMQALGADIPKIAVM-----PQSKHDVLTLLTATLEMQQHYADRP  199 (252)
T ss_dssp             EEESSCCCCH-----------------HHHHHHHHHHHHTTCSEEEEEEC-----CSSHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             ecCCCCCCCH-----------------HHHHHHHHHHHHhCCCeEEEEec-----CCCHHHHHHHHHHHHHHHHhCCCCC
Confidence             43 444421                 34567777888888643344443     36777887776543     235788


Q ss_pred             EE
Q 038230          413 IL  414 (480)
Q Consensus       413 il  414 (480)
                      ++
T Consensus       200 ~I  201 (252)
T d1gqna_         200 VI  201 (252)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.37  E-value=0.06  Score=50.26  Aligned_cols=119  Identities=17%  Similarity=0.278  Sum_probs=83.0

Q ss_pred             CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHHH
Q 038230          210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVLE  279 (480)
Q Consensus       210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi~  279 (480)
                      ++.+++-+-+-         |-+.+.-++.++.+.++|||+|.||...+-|-++.---+.          -++.+...++
T Consensus        16 ~~~li~y~~aG---------~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~   86 (261)
T d1rd5a_          16 KTAFIPYITAG---------DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLR   86 (261)
T ss_dssp             CCEEEEEEETT---------SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCeEEEEEeCc---------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhh
Confidence            45666644333         4588999999999999999999999977777655322222          1345566677


Q ss_pred             HHHcCCcCCCCeEEEeCCCHHHH----HHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          280 AVLTMPEMEGKLVSVDTFYSKVA----SEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       280 ~l~~~~~~~~~pISIDT~~~~v~----~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      .+++.   .+.|+-+=||.-...    +.+-++|++  ||-|.-.++ ..++.+.+++++...|.+-.
T Consensus        87 ~~r~~---~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE-~~~~~~~~~~~gl~~I~lva  150 (261)
T d1rd5a_          87 EVTPE---LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVA-AHSLWSEAKNNNLELVLLTT  150 (261)
T ss_dssp             HHGGG---CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTT-HHHHHHHHHHTTCEECEEEC
T ss_pred             ccccc---ccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHH-HHHHHHHHhccccceEEEec
Confidence            77765   467777767766554    445556877  777776543 47889999999999987654

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.23  E-value=0.018  Score=53.55  Aligned_cols=107  Identities=13%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      |-+.+.-++.++.+ ++|||+|.||...+-|-++.-.-++          .++.+...++.+++.   .++|+.+=||..
T Consensus        15 ~P~~~~s~~~l~~l-~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~---~~~pivlm~Y~N   90 (248)
T d1geqa_          15 DPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH---SSTPIVLMTYYN   90 (248)
T ss_dssp             SSCHHHHHHHHHHH-GGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---CCCCEEEEECHH
T ss_pred             CCCHHHHHHHHHHH-HcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhc---CCCcEEEEeccc
Confidence            35778888888776 6799999999987777665432222          234556677777765   478988888766


Q ss_pred             HHHHH--------HHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KVASE--------AVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v~~a--------aL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -+...        |.++|++  ++-|...++ .+++.+.++++|...|.+-.
T Consensus        91 ~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE-~~~~~~~~~~~gl~~I~lva  141 (248)
T d1geqa_          91 PIYRAGVRNFLAEAKASGVDGILVVDLPVFH-AKEFTEIAREEGIKTVFLAA  141 (248)
T ss_dssp             HHHHHCHHHHHHHHHHHTCCEEEETTCCGGG-HHHHHHHHHHHTCEEEEEEC
T ss_pred             cccccCHHHHhhhhcccCeeEEeccCCcHHH-HHHHHhhccccCcceEEEec
Confidence            55544        4456877  777776533 47789999999999997764

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.07  E-value=0.065  Score=50.18  Aligned_cols=109  Identities=13%  Similarity=0.209  Sum_probs=77.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      +-+.+.-++.++.+.++|||+|.||...+-|-++.-.-++-          ++.+...++.+++..  .++|+.+=||.-
T Consensus        27 ~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~--~~~pivlm~Y~N  104 (267)
T d1qopa_          27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYAN  104 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccc--cccceEEEeecc
Confidence            34789999999999999999999999777775543211111          223555666666542  368998888875


Q ss_pred             HH--------HHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KV--------ASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v--------~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -+        ++.|-++|++  +|-|.-.++ ..++.+.+++++...|.+-.
T Consensus       105 ~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee-~~~~~~~~~~~~l~~I~lva  155 (267)
T d1qopa_         105 LVFNNGIDAFYARCEQVGVDSVLVADVPVEE-SAPFRQAALRHNIAPIFICP  155 (267)
T ss_dssp             HHHTTCHHHHHHHHHHHTCCEEEETTCCGGG-CHHHHHHHHHTTCEEECEEC
T ss_pred             chhhcCchHHHHHHHhcCCCceeccchhhhh-hHHHHHhhhccCceEEEEec
Confidence            44        5556666877  777876543 57899999999999986654

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.043  Score=51.56  Aligned_cols=107  Identities=19%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTFYS  299 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~~~  299 (480)
                      |-+.+.-++.++.+. +|||+|.||...+-|-++.-.-++-          ++.+..+++.+++.   .+.|+.+=||.-
T Consensus        26 ~P~~~~~~~~l~~l~-~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~---~~~pivlm~Y~N  101 (271)
T d1ujpa_          26 FPSREGFLQAVEEVL-PYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLN  101 (271)
T ss_dssp             SSCHHHHHHHHHHHG-GGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHH
T ss_pred             CCCHHHHHHHHHHHH-cCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcc---cCCcEEEEeech
Confidence            357788888777764 6999999999777775543222221          22355566777765   478999999866


Q ss_pred             HH--------HHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          300 KV--------ASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       300 ~v--------~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      -+        ++.|.++|++  ||-|...++ ..++.+.++++|...|.+-.
T Consensus       102 ~i~~~G~~~F~~~~~~aGvdGliipDLP~ee-~~~~~~~~~~~gl~~I~lvs  152 (271)
T d1ujpa_         102 PVLAWGPERFFGLFKQAGATGVILPDLPPDE-DPGLVRLAQEIGLETVFLLA  152 (271)
T ss_dssp             HHHHHCHHHHHHHHHHHTCCEEECTTCCGGG-CHHHHHHHHHHTCEEECEEC
T ss_pred             hhhhCCchhHhHHHhhcCceeEeccchhhhh-HHHHHHHhhccccceeeccC
Confidence            54        4455556887  777776543 57899999999999996654

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.71  E-value=0.26  Score=46.31  Aligned_cols=206  Identities=17%  Similarity=0.120  Sum_probs=127.5

Q ss_pred             ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCC---------
Q 038230          198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS------TRPMA---------  262 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eS------trP~a---------  262 (480)
                      +.+++..++.+.+|.|.+.+-.+-        ..+.+.|.+.+....++|||.|=+-.-.      ..+..         
T Consensus         3 ~~i~~~~ig~~~~~~IIAEig~nH--------~G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~   74 (295)
T d1vlia2           3 FQIANKTVGKDAPVFIIAEAGINH--------DGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDV   74 (295)
T ss_dssp             EEETTEEEETTSCCEEEEEEETTT--------TTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CC
T ss_pred             eEECCEEeCCCCCeEEEEEecCCc--------CccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccc
Confidence            567888888888899998776664        3578899999999999999997665211      00100         


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCC
Q 038230          263 --------TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKV  334 (480)
Q Consensus       263 --------~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~  334 (480)
                              -.++ .++|.++   .+...+.    ++.+....++.+.++...+.|++.+==-|+.-.+..+++-+++.+-
T Consensus        75 ~~~~~~kk~els-~~~~~~l---~~~~k~~----gi~~~~s~fd~~s~~~l~~l~~~~iKIaS~d~~n~~Li~~i~k~~k  146 (295)
T d1vlia2          75 SIFSLVQSMEMP-AEWILPL---LDYCREK----QVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNR  146 (295)
T ss_dssp             CHHHHGGGBSSC-GGGHHHH---HHHHHHT----TCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCS
T ss_pred             cccccchheecC-HHHhhhH---HHHhhhc----ccceeeecccceeeeeecccCcceeEecccccccHHHHHHHHhcCC
Confidence                    0011 1344443   4444554    8999999999999999999999876544444345789999999999


Q ss_pred             CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CCccCh-hHHHHHHHhc--ccCC
Q 038230          335 PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GFSKKA-EHNLDILLGL--AASH  410 (480)
Q Consensus       335 ~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf~k~~-~~~~~~lr~l--~~~g  410 (480)
                      ++++..-. .  +            .    ....+.++.+...|-.  ++++==++ .+.... ..|+..+..+  +.++
T Consensus       147 pviistG~-~--~------------~----~ei~~~~~~~~~~~~~--~i~llhc~s~YPt~~~~~nL~~i~~l~k~~~~  205 (295)
T d1vlia2         147 PMIFSTAG-A--E------------I----SDVHEAWRTIRAEGNN--QIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPE  205 (295)
T ss_dssp             CEEEECTT-C--C------------H----HHHHHHHHHHHTTTCC--CEEEEEECSSSSCCGGGCCTTHHHHHHHHSTT
T ss_pred             chheechh-h--h------------h----hhHHHHHhHhhhcccc--cEEEEeecccccccchhhhhhhhhhhhhhccc
Confidence            98885521 1  1            1    2334556666655543  66664332 333222 3344445444  2345


Q ss_pred             CcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230          411 APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH  457 (480)
Q Consensus       411 ~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH  457 (480)
                      +|+  |.|--+              ..+ .....+|+..||.++--|
T Consensus       206 ~~v--G~SdHs--------------~~~-~~~~~~A~~~Ga~~IEkH  235 (295)
T d1vlia2         206 AVI--GFSDHS--------------EHP-TEAPCAAVRLGAKLIEKH  235 (295)
T ss_dssp             SEE--EEEECC--------------SSS-SHHHHHHHHTTCSEEEEE
T ss_pred             cce--eeeccc--------------ccc-ccchhhhhccCcceeeEE
Confidence            544  666111              011 122445667899999655

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=94.35  E-value=0.37  Score=44.48  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDT  296 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT  296 (480)
                      +||  |-+.|. .|.+...++++.++++|++-|=++|.++. + ...|. +|..++...+......    ++||  .+-+
T Consensus        12 ~TP--f~~d~~-iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE-~-~~Ls~-~Er~~l~~~~~~~~~~----~~~vi~gv~~   81 (292)
T d1xkya1          12 VTP--FDINGN-IDFAKTTKLVNYLIDNGTTAIVVGGTTGE-S-PTLTS-EEKVALYRHVVSVVDK----RVPVIAGTGS   81 (292)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCCEEEESSTTTT-G-GGSCH-HHHHHHHHHHHHHHTT----SSCEEEECCC
T ss_pred             eCC--cCCCcC-cCHHHHHHHHHHHHHCCCCEEEECeEccc-h-hhCCH-HHHHHHHHHHHHHhCC----CceEEEecCc
Confidence            577  776654 79999999999999999999999985433 2 24554 5566655555443332    4444  4443


Q ss_pred             CCH----HHHHHHHHcCCCEEecCCCC--C-CCchH----HHHHHhcCCCEEEEcC
Q 038230          297 FYS----KVASEAVGKGAHIVNDVSAG--Q-LDPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       297 ~~~----~v~~aaL~~G~~iINdVsg~--~-~d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      .+.    +-++.|.+.|++.+.-+...  . .++++    -.++...+.|+++-+.
T Consensus        82 ~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~  137 (292)
T d1xkya1          82 NNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV  137 (292)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeC
Confidence            333    33445666799987765331  1 12333    3455567899998764

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=3.5  Score=39.16  Aligned_cols=207  Identities=22%  Similarity=0.287  Sum_probs=131.6

Q ss_pred             cccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHH
Q 038230          197 VLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERL  274 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl  274 (480)
                      ...+++..++. .+..+|+    -|.|      .-+.|.+.+.|+.+.+.|++++-=|+-  .|.|.+-.-..++-++. 
T Consensus        82 ~I~v~gv~iG~-~~l~lIA----GPC~------vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~-  149 (338)
T d1vr6a1          82 VIDLGDVKIGN-GYFTIIA----GPCS------VEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEY-  149 (338)
T ss_dssp             CEECSSCEEST-TEEEEEE----ECSB------CCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHH-
T ss_pred             eEEeCCEEECC-CceEEEe----cCCC------CCCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHH-
Confidence            35677777764 3455554    3322      246788999999999999999987764  34554433333343443 


Q ss_pred             HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccc
Q 038230          275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEEN  353 (480)
Q Consensus       275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~  353 (480)
                         ++.+++.   .++|+-.|-.+++-++.+.+. +|++- |-+++- .-.++.-+++.+.+|.+=-  |.-.++     
T Consensus       150 ---l~~~k~~---~glpvvTdV~~~~~~~~~~e~-~DilQ-I~A~~~~n~~LL~~~g~t~kpV~lKk--G~~~s~-----  214 (338)
T d1vr6a1         150 ---LREAADK---YGMYVVTEALGEDDLPKVAEY-ADIIQ-IGARNAQNFRLLSKAGSYNKPVLLKR--GFMNTI-----  214 (338)
T ss_dssp             ---HHHHHHH---HTCEEEEECSSGGGHHHHHHH-CSEEE-ECGGGTTCHHHHHHHHTTCSCEEEEC--CTTCCH-----
T ss_pred             ---HHHHHhh---cCceeEEeccchhhhhhhhce-eeeEE-echhhccCHHHHHHhhccCCcEEecC--ccccch-----
Confidence               4555655   389999999999999999887 78876 555432 3678999999999988733  322111     


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCC--CccC--h--hHHHHHHHhcccCCCcEEEeeccccccccc
Q 038230          354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLG--FSKK--A--EHNLDILLGLAASHAPILIGPSRKRFLGEI  426 (480)
Q Consensus       354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiG--f~k~--~--~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v  426 (480)
                                 +.+...++++.+.|-.  +|++ .=|+-  |+.+  .  ...+..+++  ...+|+++-.|.      -
T Consensus       215 -----------~e~l~aae~i~~~Gn~--~vilcERG~~t~~~~~~~~lD~~~i~~~k~--~~~lPVi~DpsH------s  273 (338)
T d1vr6a1         215 -----------EEFLLSAEYIANSGNT--KIILCERGIRTFEKATRNTLDISAVPIIRK--ESHLPILVDPSH------S  273 (338)
T ss_dssp             -----------HHHHHHHHHHHHTTCC--CEEEEECCBCCSCCSSSSBCCTTHHHHHHH--HBSSCEEECHHH------H
T ss_pred             -----------hhhhhhHHHHHhcCCc--cceeeeccccccccccccchhhcccceeec--cccCceeeCCCC------C
Confidence                       2334566777889976  6665 44752  2221  1  233444554  367899987663      2


Q ss_pred             cCCCCcCcccH-HHHHHHHHHHHcCCc--EEEcCC
Q 038230          427 CNRPSADERDP-ATIASITAGVLGGAN--IVRVHN  458 (480)
Q Consensus       427 ~g~~~~~~r~~-~t~a~~~~a~~~Ga~--IlRvHd  458 (480)
                      .|     +|.+ ..++  -.|+..|+|  ++-||.
T Consensus       274 ~G-----~r~~v~~la--rAAvA~GadGl~iE~Hp  301 (338)
T d1vr6a1         274 GG-----RRDLVIPLS--RAAIAVGAHGIIVEVHP  301 (338)
T ss_dssp             HC-----SGGGHHHHH--HHHHHHTCSEEEEEBCS
T ss_pred             CC-----chhHHHHHH--HHHHHhCCCEEEEEeCC
Confidence            23     2333 3444  345556887  999998

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.24  Score=44.27  Aligned_cols=99  Identities=22%  Similarity=0.319  Sum_probs=73.0

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      .+|+.||...           +.++++..++.+++.|.++|.|-..+  |++        +    .+|+.+++.. ..++
T Consensus         9 ~~iipvlr~~-----------~~~~a~~~~~al~~~Gi~~iEitlr~--p~a--------~----~~i~~l~~~~-~~~~   62 (202)
T d1wa3a1           9 HKIVAVLRAN-----------SVEEAKEKALAVFEGGVHLIEITFTV--PDA--------D----TVIKELSFLK-EKGA   62 (202)
T ss_dssp             HCEEEEECCS-----------SHHHHHHHHHHHHHTTCCEEEEETTS--TTH--------H----HHHHHTHHHH-HTTC
T ss_pred             CCEEEEEECC-----------CHHHHHHHHHHHHHcCCCEEEEecCC--ccH--------H----HHHHHHHHhc-CCCc
Confidence            4567776654           57999999999999999999997632  442        1    2333333210 1356


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .|..=| .+++.++.|+++|++++  ||-.. ++++++.+.+++.+++-
T Consensus        63 ~vGaGTV~~~~~~~~a~~aGa~fi--vsP~~-~~~v~~~~~~~~i~~iP  108 (202)
T d1wa3a1          63 IIGAGTVTSVEQCRKAVESGAEFI--VSPHL-DEEISQFCKEKGVFYMP  108 (202)
T ss_dssp             EEEEESCCSHHHHHHHHHHTCSEE--ECSSC-CHHHHHHHHHHTCEEEC
T ss_pred             EEEecccccHHHHHHHHhhcccEE--eCCCC-cHHHHHHHHhcCCceeC
Confidence            677644 67999999999999999  45444 79999999999999984

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.18  Score=45.46  Aligned_cols=98  Identities=16%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      ..|+.|+...           +.+++++.++.+++.|-..|.|-..+  |++            ...|+.+++.+  .++
T Consensus        15 ~~iipvlr~~-----------~~~~a~~~~~al~~~Gi~~iEitl~t--p~a------------~~~I~~l~~~~--p~~   67 (213)
T d1wbha1          15 GPVVPVIVVK-----------KLEHAVPMAKALVAGGVRVLNVTLRT--ECA------------VDAIRAIAKEV--PEA   67 (213)
T ss_dssp             CSEEEEECCS-----------SGGGHHHHHHHHHHTTCCEEEEESCS--TTH------------HHHHHHHHHHC--TTS
T ss_pred             CCEEEEEECC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--hhH------------HHHHHHHHHHC--CCC
Confidence            3466776654           57899999999999999999998632  432            22345555543  478


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      .|..=| .+++.++.|.++|++++-+-  . .++++++.+++++.+++-
T Consensus        68 ~vGaGTV~~~~~~~~a~~aGa~FivSP--~-~~~~v~~~a~~~~i~~iP  113 (213)
T d1wbha1          68 IVGAGTVLNPQQLAEVTEAGAQFAISP--G-LTEPLLKAATEGTIPLIP  113 (213)
T ss_dssp             EEEEESCCSHHHHHHHHHHTCSCEEES--S-CCHHHHHHHHHSSSCEEE
T ss_pred             eeeccccccHHHHHHHHHCCCcEEECC--C-CCHHHHHHHHhcCCCccC
Confidence            888877 78999999999999999544  3 379999999999999984

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.07  Score=51.23  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCC---CCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230          220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQST---RPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVD  295 (480)
Q Consensus       220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eSt---rP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID  295 (480)
                      +++-+.++|  .+.++.++.++.+.+.|.|+|++.....   .|.. .+..    .....++.+.+++.   .++||..-
T Consensus       216 s~~d~~~~g--~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~ik~~---~~~pvi~~  286 (330)
T d1ps9a1         216 SMLDLVEDG--GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVP----RGAFSWVTRKLKGH---VSLPLVTT  286 (330)
T ss_dssp             EEECCSTTC--CCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSC----TTTTHHHHHHHTTS---CSSCEEEC
T ss_pred             cccccccCC--CCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCc----chhHHHHHHHHHhh---CCceEEEe
Confidence            344455554  4789999999999999999999864221   1211 1111    11234556677776   46776654


Q ss_pred             C--CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          296 T--FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       296 T--~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      -  ++|+.++++|+.| +|+|-=-...-.||++..-+++
T Consensus       287 G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~~  325 (330)
T d1ps9a1         287 NRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQS  325 (330)
T ss_dssp             SSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHT
T ss_pred             CCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHHc
Confidence            4  5899999999998 8888644443345766665543

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=92.19  E-value=0.38  Score=43.21  Aligned_cols=97  Identities=18%  Similarity=0.287  Sum_probs=76.5

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      .+++.|++..           +.+++++.++.+++.|-.+|.|=..+  |++            ...|+.+++..  .++
T Consensus        14 ~~iipvlr~~-----------~~~~~~~~~~al~~~Gi~~iEitl~~--~~a------------~~~I~~l~~~~--p~~   66 (212)
T d1vhca_          14 LKIVPVIALD-----------NADDILPLADTLAKNGLSVAEITFRS--EAA------------ADAIRLLRANR--PDF   66 (212)
T ss_dssp             HCEEEEECCS-----------SGGGHHHHHHHHHHTTCCEEEEETTS--TTH------------HHHHHHHHHHC--TTC
T ss_pred             CCEEEEEeCC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--hhH------------HHHHHHHHhcC--CCc
Confidence            5677888765           35789999999999999999998633  332            23456666542  478


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      .|..=| .+++.+++|.++|++++-+-  . .++++++.+.+++.+++
T Consensus        67 ~vGaGTV~~~~~~~~a~~aGa~FivSP--~-~~~~v~~~a~~~~i~~i  111 (212)
T d1vhca_          67 LIAAGTVLTAEQVVLAKSSGADFVVTP--G-LNPKIVKLCQDLNFPIT  111 (212)
T ss_dssp             EEEEESCCSHHHHHHHHHHTCSEEECS--S-CCHHHHHHHHHTTCCEE
T ss_pred             eEeeeecccHHHHHHHHhhCCcEEECC--C-CCHHHHHHHHhcCCCcc
Confidence            888877 78999999999999999544  4 37999999999999998

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=91.13  E-value=0.35  Score=43.59  Aligned_cols=97  Identities=12%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230          211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK  290 (480)
Q Consensus       211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~  290 (480)
                      .+|+-|+....           .+++++.++.+++.|-.+|.|-..+  |++        +    ..|+.+++..  .++
T Consensus        17 ~~iipvl~~~~-----------~~~a~~~~~al~~~Gi~~iEitl~~--p~a--------~----~~i~~l~~~~--p~~   69 (216)
T d1mxsa_          17 ARILPVITIAR-----------EEDILPLADALAAGGIRTLEVTLRS--QHG--------L----KAIQVLREQR--PEL   69 (216)
T ss_dssp             HSEEEEECCSC-----------GGGHHHHHHHHHHTTCCEEEEESSS--THH--------H----HHHHHHHHHC--TTS
T ss_pred             CCEEEEEECCC-----------HHHHHHHHHHHHHCCCCEEEEeCCC--hhH--------H----HHHHHHHHhC--CCc
Confidence            45777776653           6889999999999999999997632  321        1    3456666543  478


Q ss_pred             eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230          291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV  337 (480)
Q Consensus       291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV  337 (480)
                      .|..=| .+++.++.|.++|++++-  +-.. ++++++.+++++.+++
T Consensus        70 ~vGaGTV~~~~~~~~a~~aGa~Fiv--sP~~-~~~v~~~a~~~~i~~i  114 (216)
T d1mxsa_          70 CVGAGTVLDRSMFAAVEAAGAQFVV--TPGI-TEDILEAGVDSEIPLL  114 (216)
T ss_dssp             EEEEECCCSHHHHHHHHHHTCSSEE--CSSC-CHHHHHHHHHCSSCEE
T ss_pred             ceeeeeeecHHHHHHHHhCCCCEEE--CCCC-cHHHHHHHHhcCCCcc
Confidence            888876 689999999999999994  4443 7999999999999998

>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=89.82  E-value=5.7  Score=34.49  Aligned_cols=127  Identities=12%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHH----HcCCCEEEeCCCCCCCC------CCCC
Q 038230          196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMI----SEGADMIDIGAQSTRPM------ATKI  265 (480)
Q Consensus       196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v----~~GAdiIDIG~eStrP~------a~~v  265 (480)
                      +++.+|++.++-+.++.|++-+++.-          +++..++.|++|+    ++|||.+=.-  +..|.      ....
T Consensus         3 ~~ikIg~~~ig~~~~~~iIAei~~~~----------nh~g~l~~AkkLi~~A~~aGad~vKfQ--~~~~~~~~~~~~~~~   70 (281)
T d1o60a_           3 KIVKIGNIDVANDKPFVLFGGMNVLE----------SRDMAMQVCEAYVKVTEKLGVPYVFKA--SFDKANRSSIHSYRG   70 (281)
T ss_dssp             CCEEETTEEECTTSCCEEEEEEEECC----------CHHHHHHHHHHHHHHHHHHTCCEEEEE--ESCCTTCSSTTSCCC
T ss_pred             CEEEECCEEECCCCceEEEEeCCccc----------CHHHHHHHHHHHHHHHHHhCCCEEEec--ccccccccccccccc
Confidence            45778999998888899998777732          4455666666655    7899998864  22222      1111


Q ss_pred             CHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230          266 SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       266 ~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~  341 (480)
                      ....|+-+..   +...+.   .+....-.-.+.+..+..-+. .+++-.-+....+..++..+++.+.+++....
T Consensus        71 ~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~p~~~~~~  139 (281)
T d1o60a_          71 PGMEEGLKIF---QELKDT---FGVKIITDVHEIYQCQPVADV-VDIIQLPAFLARQTDLVEAMAKTGAVINVKKP  139 (281)
T ss_dssp             SCHHHHHHHH---HHHHHH---HCCEEEEECCSGGGHHHHHTT-CSEEEECGGGTTCHHHHHHHHHTTCEEEEECC
T ss_pred             cchHHHHHHH---HHHHHH---hcccccccccchhHHHHHHHh-ccccccccccchhhhhhhhhhcccCccccccc
Confidence            1222322221   222222   145566666666666655555 45554444433456777888888988887553

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.84  E-value=4.3  Score=36.01  Aligned_cols=71  Identities=7%  Similarity=0.032  Sum_probs=43.8

Q ss_pred             chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC-C--CCccChhHH
Q 038230          323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG-L--GFSKKAEHN  399 (480)
Q Consensus       323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg-i--Gf~k~~~~~  399 (480)
                      .+++++|++.|++.|..+..+.+...          -.+...+.+.+..+.|.+.|+   ++.+-|. .  .+..+..+.
T Consensus        87 ~~~i~~a~~lG~~~v~~~~~~~~~~~----------~~~~~~~~l~~l~~~a~~~gv---~l~lE~~~~~~~~~~~~~~~  153 (271)
T d2q02a1          87 EGLLRDAQGVGARALVLCPLNDGTIV----------PPEVTVEAIKRLSDLFARYDI---QGLVEPLGFRVSSLRSAVWA  153 (271)
T ss_dssp             HHHHHHHHHHTCSEEEECCCCSSBCC----------CHHHHHHHHHHHHHHHHTTTC---EEEECCCCSTTCSCCCHHHH
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCccc----------hHHHHHHHHHHHHHHhccCCe---EEEEeecCCcCcccCCHHHH
Confidence            45778888888888877654322110          112344566777788888888   4888872 1  234555666


Q ss_pred             HHHHHhc
Q 038230          400 LDILLGL  406 (480)
Q Consensus       400 ~~~lr~l  406 (480)
                      +++++..
T Consensus       154 ~~li~~~  160 (271)
T d2q02a1         154 QQLIREA  160 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666654

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.39  E-value=0.49  Score=45.12  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--  295 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--  295 (480)
                      ++++.+..||  .+.++.++.++.+.+.|.|++++...+.. +.. ...+.    ...+..+.+++.   .++||..-  
T Consensus       215 ~~~~~~~~~g--~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~-~~~~~----~~~~~~~~ik~~---~~~pvi~~G~  284 (337)
T d1z41a1         215 VSASDYTDKG--LDIADHIGFAKWMKEQGVDLIDCSSGALVHADI-NVFPG----YQVSFAEKIREQ---ADMATGAVGM  284 (337)
T ss_dssp             EECCCCSTTS--CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCC-CCCTT----TTHHHHHHHHHH---HCCEEEECSS
T ss_pred             ecccccccCc--cchhhhHHHHHHHHHcCCccccccccccccccc-ccCCc----ccHHHHHHHHHh---cCceEEEeCC
Confidence            4566666666  47899999999999999999999543222 211 11111    112333444544   36676653  


Q ss_pred             CCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230          296 TFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG  331 (480)
Q Consensus       296 T~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~  331 (480)
                      -++|+.++++|+.| +|+|-=-.++-.||++..-+++
T Consensus       285 i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~  321 (337)
T d1z41a1         285 ITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAK  321 (337)
T ss_dssp             CCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHh
Confidence            34799999999998 8888533333346777666655

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.13  E-value=1.7  Score=39.93  Aligned_cols=116  Identities=15%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      -+||  |-+.|. .|.+...++++.++++|++-|=++|-++.  ....|. +|..++..++......  ...+...+-+.
T Consensus        15 ~~TP--f~~dg~-iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE--~~~Ls~-eEr~~l~~~~~~~~~~--~~~vi~g~~~~   86 (296)
T d1xxxa1          15 MVTP--FSGDGS-LDTATAARLANHLVDQGCDGLVVSGTTGE--SPTTTD-GEKIELLRAVLEAVGD--RARVIAGAGTY   86 (296)
T ss_dssp             CCCC--BCTTSC-BCHHHHHHHHHHHHHTTCSEEEESSTTTT--TTTSCH-HHHHHHHHHHHHHHTT--TSEEEEECCCS
T ss_pred             eECC--CCCCcC-cCHHHHHHHHHHHHHcCCCEEEECeeccc--hhhCCH-HHHHHHHHHHHHHhcc--ccceEeccccc
Confidence            3577  766654 79999999999999999999999974433  223554 5566665544333322  01233444444


Q ss_pred             CHH-HHH---HHHHcCCCEEecCCCC--CC-CchH----HHHHHhcCCCEEEEcC
Q 038230          298 YSK-VAS---EAVGKGAHIVNDVSAG--QL-DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~-v~~---aaL~~G~~iINdVsg~--~~-d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +.+ +++   .|.+.|++.+--+...  .. ++++    -.++...+.|+++-+.
T Consensus        87 s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~  141 (296)
T d1xxxa1          87 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI  141 (296)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             hhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            433 333   2333488865433321  11 2222    2333345677776543

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=3.4  Score=37.69  Aligned_cols=135  Identities=17%  Similarity=0.265  Sum_probs=80.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKG  309 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G  309 (480)
                      ..+.|++++.++...+.|+..+.+.+. ..|..+     ...+.+..+++.+.+..  ..+-+++.+.+.+.+++--++|
T Consensus        72 ~~~~e~i~~~~~~~~~~G~~~~~~~~g-~~~~~~-----~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~e~l~~lk~aG  143 (312)
T d1r30a_          72 LMEVEQVLESARKAKAAGSTRFCMGAA-WKNPHE-----RDMPYLEQMVQGVKAMG--LEACMTLGTLSESQAQRLANAG  143 (312)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEEC-CSSCCT-----TTHHHHHHHHHHHHHTT--SEEEEECSSCCHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHcCCEEEEEccC-CCCCch-----hhHHHHHHHHHhccccc--ceeeeccccchHHHHHHhhccc
Confidence            468999999999999999998877543 233221     12344445566666542  2455788888988888887889


Q ss_pred             CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230          310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG  389 (480)
Q Consensus       310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg  389 (480)
                      ++.++ +.-+. .++....          ++..   .+        +++        ..+.++.|.++|++   +-.--.
T Consensus       144 ~~~i~-~~iEs-~~~~~~~----------~~~~---~~--------~~~--------~~~~~~~a~~~Gi~---~~~~~i  189 (312)
T d1r30a_         144 LDYYN-HNLDT-SPEFYGN----------IITT---RT--------YQE--------RLDTLEKVRDAGIK---VCSGGI  189 (312)
T ss_dssp             CCEEE-CCCBS-CHHHHHH----------HCCS---SC--------HHH--------HHHHHHHHHHHHCE---EECCEE
T ss_pred             ceeEe-cccch-hhhhhcc----------CCCC---CC--------HHH--------HHHHHHHHHHhccc---eecceE
Confidence            98875 22222 2332221          1111   11        111        12456677788884   444334


Q ss_pred             CCCccChhHHHHHHHhc
Q 038230          390 LGFSKKAEHNLDILLGL  406 (480)
Q Consensus       390 iGf~k~~~~~~~~lr~l  406 (480)
                      +|++.+.++-++.+..+
T Consensus       190 ~G~~et~~d~~~~l~~l  206 (312)
T d1r30a_         190 VGLGETVKDRAGLLLQL  206 (312)
T ss_dssp             ECSSCCHHHHHHHHHHH
T ss_pred             ecCcCcHHHHHHHHHHH
Confidence            57777776655555544

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.92  Score=41.64  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230          218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~  297 (480)
                      -+||  |-||  -.|.+...++++.++++|++-|=++|- |.-+ ...|. +|..++..++.....-  ...+.+.+-+.
T Consensus        10 ~~TP--f~d~--~iD~~~~~~~i~~l~~~Gv~Gi~v~Gs-tGE~-~~Ls~-~Er~~~~~~~~~~~~~--~~~vi~gv~~~   80 (295)
T d1o5ka_          10 IVTP--FKNG--ELDLESYERLVRYQLENGVNALIVLGT-TGES-PTVNE-DEREKLVSRTLEIVDG--KIPVIVGAGTN   80 (295)
T ss_dssp             CCCC--EETT--EECHHHHHHHHHHHHHTTCCEEEESSG-GGTG-GGCCH-HHHHHHHHHHHHHHTT--SSCEEEECCCS
T ss_pred             eEcC--cCCC--cCCHHHHHHHHHHHHHcCCCEEEECee-ccch-hhCCH-HHHHHHhhhhcccccc--CCceEeecccc
Confidence            4588  8554  379999999999999999999999984 3322 34555 5566665444333321  12455666555


Q ss_pred             CHHH-H---HHHHHcCCCEEecCCCC--CC-CchH----HHHHHhcCCCEEEEcC
Q 038230          298 YSKV-A---SEAVGKGAHIVNDVSAG--QL-DPDM----YKVVAGLKVPYVAMHM  341 (480)
Q Consensus       298 ~~~v-~---~aaL~~G~~iINdVsg~--~~-d~~m----~~l~~~~~~~vVlmh~  341 (480)
                      +.+. +   +.|-+.|++-+--+...  .. ++++    -.++...+.++++-+.
T Consensus        81 st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~  135 (295)
T d1o5ka_          81 STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV  135 (295)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEec
Confidence            5533 3   33344588866544321  11 2222    2333346778887654

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.81  E-value=3  Score=36.41  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCC-----HHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFY-----SKVAS  303 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~-----~~v~~  303 (480)
                      .+.+++++.+.+ +....++|-+|.+--         ..+=   ...|+.+++.+   +.+|-.|  +.+     ...++
T Consensus        12 ~~~~~a~~l~~~-~~~~v~~iKig~~l~---------~~~G---~~~v~~l~~~~---~~~i~~D~K~~DIg~t~~~~~~   75 (212)
T d1km4a_          12 MNRDDALRVTGE-VREYIDTVKIGYPLV---------LSEG---MDIIAEFRKRF---GCRIIADFAVADIPETNEKICR   75 (212)
T ss_dssp             SSHHHHHHHHHH-HTTTCSEEEEEHHHH---------HHHC---THHHHHHHHHH---CCEEEEEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-hCCCCcEEEECHHHH---------HhcC---HHHHHHHHHhc---ccceehhhhhhccccHHHHhHh
Confidence            467899999975 689999999994210         0000   12355565542   5677788  333     45567


Q ss_pred             HHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEc
Q 038230          304 EAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMH  340 (480)
Q Consensus       304 aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh  340 (480)
                      .+.++|+++++ |.+....   +...+.+.+++..++++.
T Consensus        76 ~~~~~gad~~T-Vh~~~g~~~i~~~~~~a~~~~~~~~~l~  114 (212)
T d1km4a_          76 ATFKAGADAII-VHGFPGADSVRACLNVAEEMGREVFLLT  114 (212)
T ss_dssp             HHHHTTCSEEE-EESTTCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             hhccccccEEE-EeccCChHHHHHHHHHHHhcCCccccch
Confidence            77788999998 6654422   234555566787776654

>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]

Probab=85.54  E-value=2.1  Score=40.26  Aligned_cols=145  Identities=17%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHcCCcCCCCeEEEeCCCHH-HHHHHHHc
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKEL----ERLIPVLEAVLTMPEMEGKLVSVDTFYSK-VASEAVGK  308 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~----~rl~~vi~~l~~~~~~~~~pISIDT~~~~-v~~aaL~~  308 (480)
                      +...+.++.|+++|||+|=|. .|   .+..+|++.-.    ..+..+++.+++..  .++|+-.-..... ..+...+.
T Consensus       183 ~~~~~~~~~qi~aGad~i~if-Ds---~a~~l~~~~f~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  256 (343)
T d1j93a_         183 TSMAKYIRYQADSGAQAVQIF-DS---WATELSPVDFEEFSLPYLKQIVDSVKLTH--PNLPLILYASGSGGLLERLPLT  256 (343)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEE-CG---GGGGSCHHHHHHHTHHHHHHHHHHHHHHS--TTCCEEEECSSCTTTGGGGGGG
T ss_pred             HHHHHHHHHHhccCCceEEec-cH---HHHHHhhHhhhhhccHHHHHHHhhhhhcC--CCCceeeecccccchhhhhhcc
Confidence            345567888999999999885 33   34457765433    34445555555432  2566666555433 34444566


Q ss_pred             CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230          309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP  388 (480)
Q Consensus       309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP  388 (480)
                      |++.++ +..   .-.+.+..+..+-.++++-+- +|..+..    ..    +++.+...+.++.+.+     ..-|+-|
T Consensus       257 ~~~~is-~d~---~~~l~~a~~~~~~~~~iqGNl-dP~~L~~----~~----e~i~~~~~~~l~~~~~-----~~~I~~l  318 (343)
T d1j93a_         257 GVDVVS-LDW---TVDMADGRRRLGPNVAIQGNV-DPGVLFG----SK----EFITNRINDTVKKAGK-----GKHILNL  318 (343)
T ss_dssp             CCSEEE-CCT---TSCHHHHHHHTCSSSEEECCB-CGGGGGS----CH----HHHHHHHHHHHHHHCS-----SSEEBCB
T ss_pred             Cccccc-ccc---ccchHHHHHHhCCCeEEEeCC-ChHHHcC----CH----HHHHHHHHHHHHhcCC-----CCcEEEC
Confidence            999986 432   234556666687788887654 3554422    12    3344444555555532     2468999


Q ss_pred             CCCCc-cChhHHHHH
Q 038230          389 GLGFS-KKAEHNLDI  402 (480)
Q Consensus       389 giGf~-k~~~~~~~~  402 (480)
                      |.|.. ++..+|++.
T Consensus       319 Ghgi~~~Tp~eNv~a  333 (343)
T d1j93a_         319 GHGIKVGTPEENFAH  333 (343)
T ss_dssp             SSCCCTTCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHH
Confidence            99984 456666544

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=84.82  E-value=4  Score=36.64  Aligned_cols=148  Identities=16%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCC
Q 038230          236 AVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGA  310 (480)
Q Consensus       236 a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~  310 (480)
                      -++.|+.+.+.|||   ++|+.+.  ..         .......+++.+.+.   .++|+++.  -.+.+.++..++.|+
T Consensus        32 P~~~a~~~~~~g~dei~ivDld~~--~~---------~~~~~~~~i~~i~~~---~~~pi~vgGGIr~~e~i~~~l~~Ga   97 (253)
T d1thfd_          32 PVELGKFYSEIGIDELVFLDITAS--VE---------KRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGA   97 (253)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSCS--SS---------HHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCEEEEEeeccc--cc---------CcccHHHHHHHHHhc---cCccceeecccccchhhhhHHhcCC
Confidence            56789999999996   4566542  11         122334677888876   58999999  789999999999998


Q ss_pred             C--EEecCCCCCCC-chHHHHHHhcCCC-EEE-EcC---CCCCCcc----ccccccchhhHHHHHHHHHHHHHHHHHHCC
Q 038230          311 H--IVNDVSAGQLD-PDMYKVVAGLKVP-YVA-MHM---RGDPSTM----QNEENLQYDDVCKQVASELYSKVRDAELSG  378 (480)
Q Consensus       311 ~--iINdVsg~~~d-~~m~~l~~~~~~~-vVl-mh~---~g~p~~~----~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G  378 (480)
                      +  +||+..- + + +.+.+++++||.. +|+ ...   .+...-.    ++...           -.+.+.+.++.+.|
T Consensus        98 ~kviigs~~~-~-n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g  164 (253)
T d1thfd_          98 DKVSINTAAV-E-NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTG-----------ILLRDWVVEVEKRG  164 (253)
T ss_dssp             SEEEESHHHH-H-CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEE-----------EEHHHHHHHHHHTT
T ss_pred             CEEEEChHHh-h-ChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccc-----------hhHHHHHHHHHhcc
Confidence            8  5555432 2 4 4467777888754 322 111   1110000    00001           11345667778889


Q ss_pred             CCCCCEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230          379 IPAWRIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILI  415 (480)
Q Consensus       379 i~~~~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~  415 (480)
                      +. +=|+.|-   |.+-|-+    +++++++ +..+.|++.
T Consensus       165 ~~-eii~tdI~~dGt~~G~d----~~ll~~i~~~~~~pvi~  200 (253)
T d1thfd_         165 AG-EILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIA  200 (253)
T ss_dssp             CS-EEEEEETTTTTSCSCCC----HHHHHHHGGGCCSCEEE
T ss_pred             CC-EEEEEEecccCccCCcc----ccccccccccccceEEE
Confidence            96 3345565   4444443    5667766 457899987

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=3.5  Score=34.92  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CC-H-HHHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FY-S-KVASEAV  306 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~-~-~v~~aaL  306 (480)
                      .+.+++++.+++ +..+.|++++|.+......            ...++.+++..  .+.++-.|.  .+ + .+.+.+.
T Consensus        11 ~~~~~~~~~~~~-~~~~vdiikig~~~~~~~G------------~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~   75 (213)
T d1q6oa_          11 QTMDSAYETTRL-IAEEVDIIEVGTILCVGEG------------VRAVRDLKALY--PHKIVLADAKIADAGKILSRMCF   75 (213)
T ss_dssp             SSHHHHHHHHHH-HGGGCSEEEECHHHHHHHC------------THHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHh-cCCCccEEEeCeeccccCC------------HHHHHHHHHhc--ccccceeEEeeccchHHHHHHHH
Confidence            568899988886 5789999999953211000            12344444432  244444332  11 2 2456677


Q ss_pred             HcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230          307 GKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR  383 (480)
Q Consensus       307 ~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~  383 (480)
                      ++|+|++. +.+....   ....+.+++++..+.+.-.   +.+.                   .+....+.+.|+.  .
T Consensus        76 ~~gad~vt-vh~~~g~~~~~~~~~~~~~~~~~~~v~~~---~~~~-------------------~~~~~~~~~~~~~--~  130 (213)
T d1q6oa_          76 EANADWVT-VICCADINTAKGALDVAKEFNGDVQIELT---GYWT-------------------WEQAQQWRDAGIG--Q  130 (213)
T ss_dssp             HTTCSEEE-EETTSCHHHHHHHHHHHHHTTCEEEEEEC---SCCC-------------------HHHHHHHHHTTCC--E
T ss_pred             HcCCCEEE-EeccCCchHHHHHHHHHHHcCCceecccC---CCCC-------------------HHHHHHHHHhHHH--H
Confidence            88999987 4443211   3355667778876544221   1110                   0112233456664  4


Q ss_pred             EEE----ecCCCCccChhHHHHHHHhcccCCCcEEEe
Q 038230          384 III----DPGLGFSKKAEHNLDILLGLAASHAPILIG  416 (480)
Q Consensus       384 Iil----DPgiGf~k~~~~~~~~lr~l~~~g~Pil~G  416 (480)
                      +++    |||++......+.++.++..+..++|+.++
T Consensus       131 ~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~  167 (213)
T d1q6oa_         131 VVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVT  167 (213)
T ss_dssp             EEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecC
Confidence            443    555544444455677777764456777665

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.44  E-value=4.8  Score=36.16  Aligned_cols=149  Identities=17%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCC
Q 038230          236 AVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGA  310 (480)
Q Consensus       236 a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~  310 (480)
                      -++.|+.+.+.|||   ++|+.+..  .+     .    .....+++.+.+.   ..+|+.++.  ++.+.++..++.|+
T Consensus        34 P~~~a~~~~~~gadei~ivDl~~~~--~~-----~----~~~~~~i~~i~~~---~~~pi~~gGGIr~~e~~~~ll~~G~   99 (252)
T d1h5ya_          34 PVEMAVRYEEEGADEIAILDITAAP--EG-----R----ATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGA   99 (252)
T ss_dssp             HHHHHHHHHHTTCSCEEEEECCCCT--TT-----H----HHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCEEEEEeccccc--cc-----c----ccHHHHHHHHHhh---cCCcceeecccchhhhhhhHhhcCC
Confidence            45689999999997   78887632  11     1    1223456666655   478999985  68899999999998


Q ss_pred             CE--EecCCCCCCCch-HHHHHHhcCCC-EEE-EcCC---CCCCc----cccccccchhhHHHHHHHHHHHHHHHHHHCC
Q 038230          311 HI--VNDVSAGQLDPD-MYKVVAGLKVP-YVA-MHMR---GDPST----MQNEENLQYDDVCKQVASELYSKVRDAELSG  378 (480)
Q Consensus       311 ~i--INdVsg~~~d~~-m~~l~~~~~~~-vVl-mh~~---g~p~~----~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G  378 (480)
                      +-  +|+.. .+ +++ +-++++.+|-. +|+ +.-+   +...-    -++..+.           .+.+.++++.++|
T Consensus       100 ~kVii~s~~-~~-~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~g  166 (252)
T d1h5ya_         100 DKVSVNTAA-VR-NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGL-----------DAVKWAKEVEELG  166 (252)
T ss_dssp             SEEEESHHH-HH-CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEE-----------EHHHHHHHHHHHT
T ss_pred             cEEEecccc-cC-CcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCC-----------CHHHHHHHHHhcC
Confidence            84  44332 22 444 55677778753 432 3321   11100    0111111           1234556777888


Q ss_pred             CCCCCEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230          379 IPAWRIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILIG  416 (480)
Q Consensus       379 i~~~~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G  416 (480)
                      +. +=|+.|-   |.+-|-+    +++++++ ...+.|++.+
T Consensus       167 ~~-eii~tdI~~dG~~~G~d----~~~~~~i~~~~~~pii~~  203 (252)
T d1h5ya_         167 AG-EILLTSIDRDGTGLGYD----VELIRRVADSVRIPVIAS  203 (252)
T ss_dssp             CS-EEEEEETTTTTTCSCCC----HHHHHHHHHHCSSCEEEE
T ss_pred             CC-EEEEEeecccCccCCcC----HHHHHHHHHhcCCCEEEe
Confidence            86 2345554   4333333    5566666 3568999873

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=83.02  E-value=0.78  Score=43.08  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230          231 QSVEAAVSQVRLMISEGADMIDIGAQSTR-------PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS  303 (480)
Q Consensus       231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr-------P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~  303 (480)
                      .+++...+.| +++++|+|.||||..=.-       -|+...   .+.+.+..+|+++++.   +++|||+=++      
T Consensus        64 ~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll---~~p~~~~~iv~~~~~~---~~~pvsvK~R------  130 (305)
T d1vhna_          64 SEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALL---KDLRHFRYIVRELRKS---VSGKFSVKTR------  130 (305)
T ss_dssp             SCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGG---SCHHHHHHHHHHHHHH---CSSEEEEEEE------
T ss_pred             cchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeec---cCHHHHHHHhhhhhhh---cccccccccc------
Confidence            4567766555 678899999999953211       123322   3466777888888876   5899998665      


Q ss_pred             HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230          304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR  342 (480)
Q Consensus       304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~  342 (480)
                          .|.+    -   ....++++.+.+.|+..+.+|-|
T Consensus       131 ----lG~d----~---~~~~~~~~~l~~~G~~~itvH~R  158 (305)
T d1vhna_         131 ----LGWE----K---NEVEEIYRILVEEGVDEVFIHTR  158 (305)
T ss_dssp             ----SCSS----S---CCHHHHHHHHHHTTCCEEEEESS
T ss_pred             ----cCcc----c---chhhHHHHHHHHhCCcEEEechh
Confidence                2432    1   11256788888899999999975

>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=4.3  Score=38.20  Aligned_cols=147  Identities=13%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHcCCc---CCCCe-EEEeCCCHHHHHHH
Q 038230          234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI----PVLEAVLTMPE---MEGKL-VSVDTFYSKVASEA  305 (480)
Q Consensus       234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~----~vi~~l~~~~~---~~~~p-ISIDT~~~~v~~aa  305 (480)
                      +..++.++.|+++|||+|=|- .|   .+..+++++-.+...    ++++.+++...   ...+| +..-......+...
T Consensus       187 ~~~~~~~~~qi~aGad~i~if-Ds---~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~~~~~~~~~l~~~  262 (356)
T d1r3sa_         187 DALVPYLVGQVVAGAQALQLF-ES---HAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEEL  262 (356)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEE-ET---TGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTCGGGHHHH
T ss_pred             HHHHHHHHHHhhcccccceec-cc---ccccccHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecchhHHHHHHHH
Confidence            456678899999999999885 33   234567655444333    34444443210   01223 55555555567777


Q ss_pred             HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230          306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII  385 (480)
Q Consensus       306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii  385 (480)
                      .+.|++.|+ +..   ...+....+..+-.++++-+- +|..+..       + -+++.+...+.++.+.     ...-|
T Consensus       263 ~~~g~d~is-~D~---~~~l~~~~~~~~~~i~lqGNl-dP~~L~~-------~-~e~i~~~~~~~l~~~~-----~~~~I  324 (356)
T d1r3sa_         263 AQAGYEVVG-LDW---TVAPKKARECVGKTVTLQGNL-DPCALYA-------S-EEEIGQLVKQMLDDFG-----PHRYI  324 (356)
T ss_dssp             TTSSCSEEE-CCT---TSCHHHHHHHHCSSSEEEEEE-CGGGGGS-------C-HHHHHHHHHHHHHHHC-----SSSEE
T ss_pred             hccCccccc-ccc---cCCHHHHHHHhCCCeeEEeCC-CHHHHcC-------C-HHHHHHHHHHHHHHhC-----CCCeE
Confidence            778999998 322   234555555566666665443 3544321       1 1344455555555552     23579


Q ss_pred             EecCCCCc-cChhHHHHH
Q 038230          386 IDPGLGFS-KKAEHNLDI  402 (480)
Q Consensus       386 lDPgiGf~-k~~~~~~~~  402 (480)
                      +=||.|.. .+..+|++.
T Consensus       325 ~nlGhGI~p~tp~env~a  342 (356)
T d1r3sa_         325 ANLGHGLYPDMDPEHVGA  342 (356)
T ss_dssp             EEESSCCCTTCCHHHHHH
T ss_pred             EeCCCCcCCCCCHHHHHH
Confidence            99999974 455666544

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.60  E-value=9.1  Score=34.56  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY  298 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~  298 (480)
                      +||  |-+.|. .|.+...++++.+++.|++-|=++|- |.-+ ...+. +|..++   ++...+..  .++...|=+.+
T Consensus         8 ~TP--f~~dg~-iD~~~~~~~i~~l~~~Gv~gi~~~Gt-tGE~-~~Ls~-~Er~~~---~~~~~~~~--~~~i~gv~~~s   76 (293)
T d1w3ia_           8 ITP--FTKDNR-IDKEKLKIHAENLIRKGIDKLFVNGT-TGLG-PSLSP-EEKLEN---LKAVYDVT--NKIIFQVGGLN   76 (293)
T ss_dssp             CCC--BCTTSS-BCHHHHHHHHHHHHHTTCCEEEESST-TTTG-GGSCH-HHHHHH---HHHHHTTC--SCEEEECCCSC
T ss_pred             eCC--CCCCcC-CCHHHHHHHHHHHHHcCCCEEEECee-chhh-hhCCH-HHHHHH---HHHHHhhc--cccccccccch
Confidence            688  755554 79999999999999999999999984 3322 34554 445444   34444432  24455555555


Q ss_pred             HHHHHH----HHHcCCCEEecCCCC---CCC-ch----HHHHHHhcCCCEEEEcC
Q 038230          299 SKVASE----AVGKGAHIVNDVSAG---QLD-PD----MYKVVAGLKVPYVAMHM  341 (480)
Q Consensus       299 ~~v~~a----aL~~G~~iINdVsg~---~~d-~~----m~~l~~~~~~~vVlmh~  341 (480)
                      .+.+.+    |-+.|++-+-.+...   ... ++    .-.++...+.|+++-+.
T Consensus        77 t~~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~lYn~  131 (293)
T d1w3ia_          77 LDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNY  131 (293)
T ss_dssp             HHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             hhhhhhhhhhhhhhccccccccccchhccchHHHHHHHHHHHHHhhccceeeecc
Confidence            444333    333598866543321   112 22    23455557899998775

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.97  E-value=2.1  Score=39.60  Aligned_cols=58  Identities=12%  Similarity=0.095  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230          232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATK-----ISAEKELERLIPVLEAVLTMPEMEGKLVSV  294 (480)
Q Consensus       232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~-----v~~~eE~~rl~~vi~~l~~~~~~~~~pISI  294 (480)
                      +.++-++.|+++.+.|||+|++|..+  |+...     .....+.+.+..+++.+++.   +++||.+
T Consensus       114 ~~~d~~~~a~~~~~~gad~lelN~sc--Pn~~~~~~~~~~~~~~~~~~~~i~~~v~~~---~~~pv~v  176 (312)
T d1gtea2         114 NKNDWMELSRKAEASGADALELNLSC--PHGMGERGMGLACGQDPELVRNICRWVRQA---VQIPFFA  176 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCC--BCCCC-----SBGGGCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred             chhHHHHHHHHhccCCCCeEeeccCC--CCcccccccchhhhhhHHHHHHHHHHHhhc---cCCceee
Confidence            56788888999999999999999754  32110     01112344566677777765   3666554

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=81.85  E-value=2.1  Score=39.04  Aligned_cols=150  Identities=11%  Similarity=0.003  Sum_probs=76.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC----------CC
Q 038230          230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVDT----------FY  298 (480)
Q Consensus       230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT----------~~  298 (480)
                      .++.++-++.++.+.+.|.+.|++|..+ .|... ....+.++..+..+......      ..+....          ..
T Consensus        29 ~~~~~~ki~i~~~L~~~Gv~~IEvg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  101 (303)
T d1rqba2          29 RMAMEDMVGACADIDAAGYWSVECWGGA-TYDSCIRFLNEDPWERLRTFRKLMPN------SRLQMLLRGQNLLGYRHYN  101 (303)
T ss_dssp             CCCGGGTGGGHHHHHHTTCSEEEEEETT-HHHHHHHTSCCCHHHHHHHHHHHCTT------SCEEEEECGGGTTSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCCCc-ChHHHHHHhcCchHHHHHHHHhhhhh------HHHHHHhcccccccccccc
Confidence            4677888889999999999999999522 11100 00001233333333332222      2222211          12


Q ss_pred             HHHH----HHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230          299 SKVA----SEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCKQVASELYS  369 (480)
Q Consensus       299 ~~v~----~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~  369 (480)
                      -...    ......+.+.+-.....+..   ....+.+++.+..+.  ++...+.+.+                .+++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~  165 (303)
T d1rqba2         102 DEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHT----------------VEGYVK  165 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCC----------------HHHHHH
T ss_pred             hhhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCC----------------HHHHHH
Confidence            2233    33334588887766554422   234556667776654  3332222211                145567


Q ss_pred             HHHHHHHCCCCCCCEEEec-CCCCccChhHHHHHHHhc
Q 038230          370 KVRDAELSGIPAWRIIIDP-GLGFSKKAEHNLDILLGL  406 (480)
Q Consensus       370 ~i~~a~~~Gi~~~~IilDP-giGf~k~~~~~~~~lr~l  406 (480)
                      .++.+.+.|.+ .=-+-|. |.+..   .+-.++++.+
T Consensus       166 ~~~~~~~~G~~-~i~l~DT~G~~~P---~~v~~li~~l  199 (303)
T d1rqba2         166 LAGQLLDMGAD-SIALKDMAALLKP---QPAYDIIKAI  199 (303)
T ss_dssp             HHHHHHHTTCS-EEEEEETTCCCCH---HHHHHHHHHH
T ss_pred             HHHHHHhcCCc-EEeecCccchhhh---HHHHHHHHHH
Confidence            78888899986 2234576 44333   3334455554

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=7.4  Score=35.19  Aligned_cols=113  Identities=10%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230          219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF  297 (480)
Q Consensus       219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~  297 (480)
                      +||  |-+.+ -.|.+...++++.+++.|++-|=++|-+ .-+ ...|. +|..++.. +++.....   ..+.+.+-+.
T Consensus        10 ~TP--f~~d~-~iD~~~~~~~i~~l~~~Gv~Gl~~~Gst-GE~-~~Ls~-~Er~~~~~~~~~~~~~~---~~vi~g~~~~   80 (292)
T d2a6na1          10 VTP--MDEKG-NVCRASLKKLIDYHVASGTSAIVSVGTT-GES-ATLNH-DEHADVVMMTLDLADGR---IPVIAGTGAN   80 (292)
T ss_dssp             CCC--BCTTS-SBCHHHHHHHHHHHHHHTCCEEEESSTT-TTG-GGSCH-HHHHHHHHHHHHHHTTS---SCEEEECCCS
T ss_pred             ECC--CCCCC-CCCHHHHHHHHHHHHHcCCCEEEECeec-cch-hhCCH-HHHHHHhhhhhhhcccc---ceeEeecccc
Confidence            577  65554 4799999999999999999999999743 322 34555 45555544 44444332   2445555555


Q ss_pred             CHHHHHHHHH----cCCCEEecCCCC--C-CCchH----HHHHHhcCCCEEEEc
Q 038230          298 YSKVASEAVG----KGAHIVNDVSAG--Q-LDPDM----YKVVAGLKVPYVAMH  340 (480)
Q Consensus       298 ~~~v~~aaL~----~G~~iINdVsg~--~-~d~~m----~~l~~~~~~~vVlmh  340 (480)
                      +.+.+.+..+    .|++-+--+...  . .++++    -.++...+.|+++-+
T Consensus        81 s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn  134 (292)
T d2a6na1          81 ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYN  134 (292)
T ss_dssp             SHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             hHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEE
Confidence            5444333333    377755433321  1 12222    234444677777644

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.02  E-value=8.6  Score=33.92  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             CccCCHHHHHHHHHHHHHcCCCEEEe--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHH
Q 038230          228 GKFQSVEAAVSQVRLMISEGADMIDI--GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEA  305 (480)
Q Consensus       228 g~~~~~e~a~~~A~~~v~~GAdiIDI--G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aa  305 (480)
                      +...++|+..+.|+++++.|-..+=+  |...++   ..-+.+++++|+..+-+.+-     .++.|.||....-..+.|
T Consensus        19 ~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~---~~~~~~~d~~~v~avR~~~G-----~~~~l~vDaN~~~~~~~A   90 (255)
T d1rvka1          19 GGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVS---WAPDVKMDLKACAAVREAVG-----PDIRLMIDAFHWYSRTDA   90 (255)
T ss_dssp             TTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTST---TCCCHHHHHHHHHHHHHHHC-----TTSEEEEECCTTCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccc---cccCHHHHHHHHHHHHHHcC-----Cccceecccccccccchh
Confidence            44568999999999999999998876  432222   22346777877654443332     378999997544333333


Q ss_pred             HH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230          306 VG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA  338 (480)
Q Consensus       306 L~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl  338 (480)
                      ++       .+..++=+--.....+.+..+.+..++++++
T Consensus        91 ~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~pI~~  130 (255)
T d1rvka1          91 LALGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVG  130 (255)
T ss_dssp             HHHHHHHHTTTCSEEECCSCTTCHHHHHHHHHHCSSCEEE
T ss_pred             hhhhhhcccchhhhhcCCcccccHHHHHHHHHhcccceee
Confidence            33       2788887655433226788888889999876