Citrus Sinensis ID: 038259

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
SSSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKKNNGD
cccccccEEcccccccHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEccccccccccccccccccHHHHHHHcccccEEEEEEEEEEEcccEEEccccccccHHHHccccccccEEEEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEEEEEccHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccc
cccccEEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHEEEEEccccccccEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHccccHHHHccccccccHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccc
SSSISKVTYTKINSSYSSVLNFTIqnfrfstpntpkplviitpldVSQVQAAIKCSKKHGLQIrlrsgghdfeglsyvsqVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEksknlgfpaglcptvgagghisgggYGVMLRKFGlaadnivdahlidangrfldresmgEDLFWAirgggigaSFGVIVAWKVrlvpvpstvTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQggvdrllplmqesfpelgltkedctemswIESVHnlagfdkgqsLDLLLdrnarsngvvvngttkdffkgksdyvkqpipqnafeGIYDKFYEEEGQRAFMVLVPyggkmseisesetpfphragnLYKIFYgvawgedrtsrrHIDWIRRLYGymtpyvsknpreayinyrdldigtnnqgytsikqASVWGSKYFKNNFKRLVRVKSmvdphnffrneqsippltswrkknngd
sssiskvtytkiNSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRnarsngvvvngttkdffkgksdyvkqpipqNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISEsetpfphragNLYKIFYGvawgedrtsrRHIDWIRRLYgymtpyvsknPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVdphnffrneqsippltswrkknngd
SSSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVgagghisgggygVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKKNNGD
*******TYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKM*********FPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFF*******************
**SISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSI*************
********YTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKKNNGD
**SISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPL**********
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SSSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKKNNGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query501 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.944 0.867 0.537 1e-146
A6P6V9544 Cannabidiolic acid syntha N/A no 0.956 0.880 0.542 1e-145
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.942 0.866 0.538 1e-145
A6P6W1545 Cannabidiolic acid syntha N/A no 0.944 0.867 0.529 1e-145
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.942 0.866 0.530 1e-143
Q9SVG4570 Reticuline oxidase-like p no no 0.952 0.836 0.471 1e-114
P93479535 Reticuline oxidase OS=Pap N/A no 0.938 0.878 0.433 1e-106
P30986538 Reticuline oxidase OS=Esc N/A no 0.926 0.862 0.449 1e-106
O06997447 Uncharacterized FAD-linke yes no 0.810 0.908 0.281 4e-23
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.806 0.882 0.259 4e-19
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/506 (53%), Positives = 354/506 (69%), Gaps = 33/506 (6%)

Query: 5   SKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIR 64
           +K+ YT+ +  Y S+LN TIQN RF++  TPKPLVIITPL+VS +Q  I CSKK GLQIR
Sbjct: 49  AKLVYTQHDQFYMSILNSTIQNLRFTSDTTPKPLVIITPLNVSHIQGTILCSKKVGLQIR 108

Query: 65  LRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKN 124
            RSGGHD EG+SY+SQVPFV++DL N+  + +D  ++TAWV+AGATLG++YY I E ++N
Sbjct: 109 TRSGGHDAEGMSYISQVPFVIVDLRNMHSVKIDVHSQTAWVEAGATLGEVYYWINENNEN 168

Query: 125 LGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFW 184
           L FPAG CPTVGAGGH SGGGYG ++R +GLAADNI+DAHL++ +G+ LDR+SMGEDLFW
Sbjct: 169 LSFPAGYCPTVGAGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFW 228

Query: 185 AIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDL 243
           AIRGGG G +FG+I AWK+RLV VPS  T   V +N+E     K+V+KWQ +A    ++L
Sbjct: 229 AIRGGG-GENFGIIAAWKIRLVAVPSMSTIFSVKKNMEIHELVKLVNKWQNIAYMYEKEL 287

Query: 244 -----FIEVTLT----RMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSW 294
                FI   +T    +  +T+ + FS +F GGVD L+ LM +SFPELG+ K DC ++SW
Sbjct: 288 LLFTHFITRNITDNQGKNKTTIHSYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKQLSW 347

Query: 295 IESV--------HNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQ 346
           I+++        +N   F K    ++LLDR         +G  K  F  K DYVK+PIP+
Sbjct: 348 IDTIIFYSGVVNYNTTYFKK----EILLDR---------SGGRKAAFSIKLDYVKKPIPE 394

Query: 347 NAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRT 406
            A   I +K YEE+      V  PYGG M EISES  PFPHRAG +Y+I+Y  +W +   
Sbjct: 395 TAMVTILEKLYEEDVGVGMFVFYPYGGIMDEISESAIPFPHRAGIMYEIWYIASWEKQED 454

Query: 407 SRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG-TNNQGYTSIKQASVWGSKYFKNN 465
           + +HI+WIR +Y + TPYVS+NPR AY+NYRDLD+G TN +   +  QA +WG KYF  N
Sbjct: 455 NEKHINWIRNVYNFTTPYVSQNPRMAYLNYRDLDLGKTNFESPNNYTQARIWGEKYFGKN 514

Query: 466 FKRLVRVKSMVDPHNFFRNEQSIPPL 491
           F RLV+VK+ VDP NFFRNEQSIPPL
Sbjct: 515 FNRLVKVKTKVDPDNFFRNEQSIPPL 540
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
224115242527 predicted protein [Populus trichocarpa] 0.966 0.918 0.639 0.0
224056831533 predicted protein [Populus trichocarpa] 0.962 0.904 0.643 0.0
224122386533 predicted protein [Populus trichocarpa] 0.966 0.908 0.637 0.0
224110866533 predicted protein [Populus trichocarpa] 0.966 0.908 0.641 0.0
224108834533 predicted protein [Populus trichocarpa] 0.966 0.908 0.641 0.0
224122382534 predicted protein [Populus trichocarpa] 0.966 0.906 0.640 1e-180
224108830533 predicted protein [Populus trichocarpa] 0.966 0.908 0.637 1e-180
224103509531 predicted protein [Populus trichocarpa] 0.966 0.911 0.635 1e-179
358348153543 Reticuline oxidase [Medicago truncatula] 0.970 0.895 0.636 1e-179
356510754538 PREDICTED: reticuline oxidase-like prote 0.970 0.903 0.640 1e-179
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/505 (63%), Positives = 396/505 (78%), Gaps = 21/505 (4%)

Query: 1   SSSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHG 60
           S SISK+ YT INSSYSS+L F+IQN RF+T +TPKPLVI+TP ++S +QAAI CS+KHG
Sbjct: 33  SHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIVTPTNISHIQAAIICSQKHG 92

Query: 61  LQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAE 120
           +QIR+RSGGHD+EGLSYVS   FVVIDL+NL  INV+A  KTAWVQ+G T+G++YYRIAE
Sbjct: 93  MQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENKTAWVQSGVTIGEVYYRIAE 152

Query: 121 KSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGE 180
           KS+ L FPA +CPTVG GGH SGGGYG+++RK+GLAAD+I+DA L+D  GR LDRESMGE
Sbjct: 153 KSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHIIDAQLVDVKGRILDRESMGE 212

Query: 181 DLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLH 240
           DLFWAIRGGG G +FGV++AWK+ LV  P TVT   V R LEQNA+K+VH+WQ+VA+KLH
Sbjct: 213 DLFWAIRGGG-GNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNASKLVHRWQFVADKLH 271

Query: 241 EDLFIEVTLTRMNS--------TMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEM 292
           EDLFI + L R+NS        T+ A+F+ +F GG+DRLLPL+Q+SFPELGL KEDC EM
Sbjct: 272 EDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQDSFPELGLVKEDCIEM 331

Query: 293 SWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGI 352
           SWI+SV    GF    SLD+LLDR           +T+  FK KSDYVK+PIP+   EGI
Sbjct: 332 SWIQSVLYFDGFPSNSSLDVLLDRTP---------STRRNFKAKSDYVKEPIPELGLEGI 382

Query: 353 YDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGED--RTSRRH 410
           +++F++++     ++  PYGGKMSEISES  PFPHRAGN+YKI + + W E+    ++RH
Sbjct: 383 WERFFDKDINTPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEGIVATKRH 442

Query: 411 IDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQ-GYTSIKQASVWGSKYFKNNFKRL 469
           I WIRRLY Y+ PYVSK PR AY+NYRDLDIG NN  G TS +QAS+WG KYFKNNF RL
Sbjct: 443 ISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGLKYFKNNFDRL 502

Query: 470 VRVKSMVDPHNFFRNEQSIPPLTSW 494
           VRVK+ VDP NFFRNEQSIPPL+SW
Sbjct: 503 VRVKTAVDPANFFRNEQSIPPLSSW 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.940 0.877 0.519 5e-131
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.958 0.887 0.509 1.7e-130
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.914 0.860 0.510 1.5e-129
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.944 0.887 0.504 4.2e-127
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.956 0.900 0.488 5.3e-127
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.938 0.878 0.492 8.7e-127
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.904 0.851 0.515 2.9e-126
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.918 0.861 0.508 6.1e-126
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.954 0.881 0.498 1.9e-124
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.920 0.869 0.487 3.9e-124
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 255/491 (51%), Positives = 340/491 (69%)

Query:    10 TKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGG 69
             TK  S +S VL  T QN RF   + PKP  I +P+  S VQA+I CSKK  + +R+RSGG
Sbjct:    57 TKNVSMFSQVLESTAQNLRFLKKSMPKPGFIFSPIHESHVQASIICSKKLRMHLRVRSGG 116

Query:    70 HDFEGLSYVSQV--PFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGF 127
             HD+EGLSYVSQ+  PF+++DL  + ++N++    +AWVQ+GAT+G+LYYRIAEKSK  GF
Sbjct:   117 HDYEGLSYVSQIDKPFILMDLSKMRQVNINIQDNSAWVQSGATVGELYYRIAEKSKVHGF 176

Query:   128 PAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIR 187
             PAGLC ++             M+RK+GL ADN++DA ++DANG+ LDR +MGED FWAIR
Sbjct:   177 PAGLCSSLGIGGHITGGAYGSMMRKYGLGADNVLDAKIVDANGKLLDRAAMGEDTFWAIR 236

Query:   188 GGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNA-TKIVHKWQYVANKLHEDLFIE 246
             GG  G SFG+I+AWK++LVPVP TVT   VT+ L+Q+   KI+ KWQ VA+KL E+LFI 
Sbjct:   237 GGA-GGSFGIILAWKIKLVPVPKTVTVFTVTKTLQQDVGNKIISKWQRVADKLVEELFIR 295

Query:   247 VTL----TRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLA 302
             V      T  N T+  +++ +F GG   L+ +M++SFPELGLT +DC EMSW+ES+  ++
Sbjct:   296 VLFNVAGTGGNKTVTTSYNALFLGGKGTLMNVMKKSFPELGLTFKDCIEMSWLESIAYIS 355

Query:   303 GFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQ 362
             GF      ++LL    +S    V+      FK KSD+VK PIP++  +GI+ K  +E+  
Sbjct:   356 GFPTHTPTNVLLQ--GKSPFPKVS------FKAKSDFVKTPIPESGLQGIFKKLLKED-- 405

Query:   363 RAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW-GEDRTSRRHIDWIRRLYGYM 421
                M+  PYGG M++I ES+ PFPHR G L+K+ Y  +W   D+   RHI+WIR LY YM
Sbjct:   406 IPLMIWNPYGGMMAKIPESQIPFPHRKGVLFKVQYVTSWLDSDKRPSRHINWIRDLYSYM 465

Query:   422 TPYVSKNPREAYINYRDLDIGTNNQGY-TSIKQASVWGSKYFKNNFKRLVRVKSMVDPHN 480
             TPYVS NPREAY+NYRDLD+G N +   T IKQA VWG+ YFKNNF RL+ +K+ VDP N
Sbjct:   466 TPYVSSNPREAYVNYRDLDLGRNTKDVKTCIKQAQVWGANYFKNNFNRLMMIKAKVDPEN 525

Query:   481 FFRNEQSIPPL 491
             FFR+EQSIPP+
Sbjct:   526 FFRHEQSIPPM 536
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.53860.94210.8660N/Ano
A6P6W0CASL1_CANSANo assigned EC number0.53750.94410.8678N/Ano
A6P6W1CASL2_CANSANo assigned EC number0.52960.94410.8678N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.53060.94210.8660N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.54250.95600.8805N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 6e-32
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 6e-26
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-18
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 2e-06
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 6e-04
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 0.001
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  119 bits (300), Expect = 6e-32
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 37  PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-N 95
           P  ++ P    +V A ++ + ++GL + +R GG    G + ++    VV+DL  L+ I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 96  VDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGL 155
           +D    TA V+AG TLG L   +A K   LG   G       GG I+  G G    ++GL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 156 AADNIVDAHLIDANGRFLD 174
             DN++   ++ A+G  + 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 501
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
KOG1232511 consensus Proteins containing the FAD binding doma 99.92
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.9
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.89
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.82
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.82
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.77
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.73
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.64
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.63
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.56
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.32
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.62
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.46
PRK09799258 putative oxidoreductase; Provisional 94.99
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.26
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.66
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.91
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 91.53
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.71
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.8
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 88.9
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 88.11
PLN02906 1319 xanthine dehydrogenase 85.8
PLN00192 1344 aldehyde oxidase 83.75
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 82.4
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-39  Score=339.40  Aligned_cols=190  Identities=19%  Similarity=0.289  Sum_probs=169.5

Q ss_pred             ccCCCCCCCCccEEEecCCHHHHHHHHHHHH--HCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCC------e-EEc
Q 038259           27 FRFSTPNTPKPLVIITPLDVSQVQAAIKCSK--KHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSE------I-NVD   97 (501)
Q Consensus        27 ~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~--~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~------i-~~d   97 (501)
                      ..|+......|.+|++|+|++||+++|++|+  +++++|.+||+||++.|.+...+  +++|||++||+      + ++|
T Consensus        55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd  132 (525)
T PLN02441         55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVS  132 (525)
T ss_pred             cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEc
Confidence            4588888889999999999999999999997  66999999999999998887654  99999999999      3 788


Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-cc
Q 038259           98 AVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RE  176 (501)
Q Consensus        98 ~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~  176 (501)
                      .+..+|+|++|++|.+|.+++.++|+. +...+....++|||.++++|+|..+.+||..+|+|++++||++||++++ +.
T Consensus       133 ~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~  211 (525)
T PLN02441        133 GDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP  211 (525)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence            899999999999999999999998742 2234556678999999999999999999999999999999999999997 67


Q ss_pred             CCCcchHHHhhccccCCceEEEEEEEEEEEecCCeeEEEEEEecc
Q 038259          177 SMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNL  221 (501)
Q Consensus       177 ~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~  221 (501)
                      .+|+|||||++||+  |+|||||++|||++|.|+.+.++.+.|..
T Consensus       212 ~~n~DLF~Av~Ggl--G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        212 TQNSDLFFAVLGGL--GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             CCChhHHHhhccCC--CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            78999999999998  99999999999999999977666666653

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-146
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-124
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-122
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-107
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-107
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-107
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-107
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-106
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-106
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-106
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 8e-21
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-20
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 6e-19
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 1e-17
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-17
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 1e-14
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-12
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-11
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/505 (51%), Positives = 339/505 (67%), Gaps = 33/505 (6%)
Query: 6   KVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRL 65
           K+ YT+ +  Y S+LN TIQN RF +  TPKPLVI+TP + S +QA I CSKK GLQIR 
Sbjct: 23  KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT 82
Query: 66  RSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNL 125
           RSGGHD EG+SY+SQVPFVV+DL N+  I +D  ++TAWV+AGATLG++YY I EK++NL
Sbjct: 83  RSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENL 142
Query: 126 GFPAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWA 185
            FP G CPTV             ++R +GLAADNI+DAHL++ +G+ LDR+SMGEDLFWA
Sbjct: 143 SFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWA 202
Query: 186 IRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDL- 243
           IRGGG G +FG+I AWK++LV VPS  T   V +N+E     K+ +KWQ +A K  +DL 
Sbjct: 203 IRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLV 261
Query: 244 ----FIEVTLT----RMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWI 295
               FI   +T    +  +T+   FS +F GGVD L+ LM +SFPELG+ K DC E SWI
Sbjct: 262 LMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI 321
Query: 296 ESV--------HNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQN 347
           ++          N A F K    ++LLDR+A           K  F  K DYVK+PIP+ 
Sbjct: 322 DTTIFYSGVVNFNTANFKK----EILLDRSAGK---------KTAFSIKLDYVKKPIPET 368
Query: 348 AFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTS 407
           A   I +K YEE+      VL PYGG M EISES  PFPHRAG +Y+++Y  +W +   +
Sbjct: 369 AMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN 428
Query: 408 RRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG-TNNQGYTSIKQASVWGSKYFKNNF 466
            +HI+W+R +Y + TPYVS+NPR AY+NYRDLD+G TN+    +  QA +WG KYF  NF
Sbjct: 429 EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNF 488
Query: 467 KRLVRVKSMVDPHNFFRNEQSIPPL 491
            RLV+VK+ VDP+NFFRNEQSIPPL
Sbjct: 489 NRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-178
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-177
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-175
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-175
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-174
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-165
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-122
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-49
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 8e-42
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-20
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 7e-18
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-17
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 9e-17
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-09
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 5e-09
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 3e-06
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 7e-06
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 7e-06
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  585 bits (1510), Expect = 0.0
 Identities = 266/506 (52%), Positives = 344/506 (67%), Gaps = 25/506 (4%)

Query: 1   SSSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHG 60
           + +  K+ YT+ +  Y S+LN TIQN RF +  TPKPLVI+TP + S +QA I CSKK G
Sbjct: 18  NVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVG 77

Query: 61  LQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAE 120
           LQIR RSGGHD EG+SY+SQVPFVV+DL N+  I +D  ++TAWV+AGATLG++YY I E
Sbjct: 78  LQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINE 137

Query: 121 KSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDRESMGE 180
           K++NL FP G CPTVG GGH SGGGYG ++R +GLAADNI+DAHL++ +G+ LDR+SMGE
Sbjct: 138 KNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGE 197

Query: 181 DLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKL 239
           DLFWAIRGGG G +FG+I AWK++LV VPS  T   V +N+E     K+ +KWQ +A K 
Sbjct: 198 DLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKY 256

Query: 240 HEDLFIEVTLTRMN---------STMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCT 290
            +DL +       N         +T+   FS +F GGVD L+ LM +SFPELG+ K DC 
Sbjct: 257 DKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCK 316

Query: 291 EMSWIESVHNLAGFDK----GQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQ 346
           E SWI++    +G           ++LLDR+A           K  F  K DYVK+PIP+
Sbjct: 317 EFSWIDTTIFYSGVVNFNTANFKKEILLDRSA---------GKKTAFSIKLDYVKKPIPE 367

Query: 347 NAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRT 406
            A   I +K YEE+      VL PYGG M EISES  PFPHRAG +Y+++Y  +W +   
Sbjct: 368 TAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQED 427

Query: 407 SRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQ-GYTSIKQASVWGSKYFKNN 465
           + +HI+W+R +Y + TPYVS+NPR AY+NYRDLD+G  N     +  QA +WG KYF  N
Sbjct: 428 NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKN 487

Query: 466 FKRLVRVKSMVDPHNFFRNEQSIPPL 491
           F RLV+VK+ VDP+NFFRNEQSIPPL
Sbjct: 488 FNRLVKVKTKVDPNNFFRNEQSIPPL 513
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.32
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.58
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.26
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 94.4
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 94.2
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.52
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.5
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 88.11
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=4.3e-88  Score=715.75  Aligned_cols=482  Identities=55%  Similarity=0.994  Sum_probs=418.8

Q ss_pred             CCCCCceecCCCCChhhHhhhccccccCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCC
Q 038259            2 SSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQV   81 (501)
Q Consensus         2 ~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~   81 (501)
                      .++++.|++|+|+.|++++.++++|.||+....++|.+||+|+|++||+++|++|+++++||.+|||||++.+.+.....
T Consensus        19 ~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~   98 (518)
T 3vte_A           19 VANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV   98 (518)
T ss_dssp             ---CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCSS
T ss_pred             CCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCCC
Confidence            46789999999999999998889999999988999999999999999999999999999999999999999887743222


Q ss_pred             CEEEEEccCCCCeEEcCCCCEEEEcCCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEe
Q 038259           82 PFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIV  161 (501)
Q Consensus        82 ~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~  161 (501)
                      ++++|||++|++|++|+++.+|+||||+++.+|+++|.++|++|.+++|.|++|||||+++|||+|+++++||+.+|+|+
T Consensus        99 ~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~  178 (518)
T 3vte_A           99 PFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII  178 (518)
T ss_dssp             SEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEE
T ss_pred             CeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEE
Confidence            49999999999999999999999999999999999999998789999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcEEeccCCCcchHHHhhccccCCceEEEEEEEEEEEecCCeeEEEEEEecch-hhHHHHHHHHHHHHHhhc
Q 038259          162 DAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLH  240 (501)
Q Consensus       162 ~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p  240 (501)
                      +++||++||++++.+.+|+|||||+|||+ +|+|||||+++||++|.|+.+..|.+.+.++ +++.+++.+||++.+++|
T Consensus       179 ~~evV~adG~iv~~~~~~~DLf~a~rGgg-~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p  257 (518)
T 3vte_A          179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYD  257 (518)
T ss_dssp             EEEEECTTCCEECHHHHCHHHHHHHTTSC-GGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSC
T ss_pred             EEEEEccCCeEEEeeccccchhhheeccc-CCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCC
Confidence            99999999999975446899999999984 4999999999999999999888888887654 567889999999999999


Q ss_pred             cCceEEEEEec---------CCceeEEEEEEEEeCCccChhhhHhhhcCcCCCCcccceecchHHHHHhhcCCCCC-Cc-
Q 038259          241 EDLFIEVTLTR---------MNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKG-QS-  309 (501)
Q Consensus       241 ~~l~~~~~~~~---------~~~~~~i~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  309 (501)
                      +++++.+.+..         ++..+.+.+.++|+|+.+++.+.|.+.|++++.....+.+++|++.+.++++++.+ .+ 
T Consensus       258 ~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~  337 (518)
T 3vte_A          258 KDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTAN  337 (518)
T ss_dssp             TTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC----
T ss_pred             HhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCcc
Confidence            99999887653         11235678889999999999998888788887766788999999988888766543 33 


Q ss_pred             --hhhhhcccccCCcccccCCccccccccccccCCCCCHHHHHHHHHHHhhcCCceEEEEEEecCCcCCCCCCCCCCCcc
Q 038259          310 --LDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPH  387 (501)
Q Consensus       310 --~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~Ggav~~~~~~~taf~~  387 (501)
                        ++.++++...         .+.|||.||.|+.+++++++++.+++.+.+.+...+.+.+.++||++++++.++|||+|
T Consensus       338 ~~~~~l~~~~~~---------~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~h  408 (518)
T 3vte_A          338 FKKEILLDRSAG---------KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPH  408 (518)
T ss_dssp             -CGGGGGCTTCS---------CCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCC
T ss_pred             chhhhhccCCcC---------cccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccc
Confidence              4555555432         34678899999988899999999999887644335789999999999999999999999


Q ss_pred             cCCCeEEEEEEeeeCCcchhhHHHHHHHHHHhhccccccCCCCccccCCCCCCCC-CCCCCCcchhhhchhhhhhhcccH
Q 038259          388 RAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG-TNNQGYTSIKQASVWGSKYFKNNF  466 (501)
Q Consensus       388 R~~~~~~i~~~~~w~~~~~~~~~~~wi~~~~~~l~~~~~~~~~g~Y~Ny~d~~~~-~~~~~~~~~~~~~~~~~~yyg~n~  466 (501)
                      |+++.|.+++.+.|.+++.++++.+|++++++.+.|+....+.++|+||+|.+++ .+..++++++....|++.|||+||
T Consensus       409 R~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg~N~  488 (518)
T 3vte_A          409 RAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNF  488 (518)
T ss_dssp             CTTCCEEEEEEEEECCTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSSTHH
T ss_pred             cCcceEEEEEEEecCCcchhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhHhHH
Confidence            9955899999999988778888999999999999999655567999999998876 322234555556689999999999


Q ss_pred             HHHHHHHhhcCCCCCCcCCCCCCCccc
Q 038259          467 KRLVRVKSMVDPHNFFRNEQSIPPLTS  493 (501)
Q Consensus       467 ~RL~~IK~kyDP~n~F~~~~sI~~~~~  493 (501)
                      +||++||+||||+|+|+++|||+|..+
T Consensus       489 ~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          489 NRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999999999999999999999866
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 501
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 5e-17
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-15
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 5e-06
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 8e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.3 bits (189), Expect = 5e-17
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 11/180 (6%)

Query: 36  KPLVIITPLDVSQVQAAIKCSKKH---GLQIRLRSGGHDFEGLSYVSQVPFVVIDLLN-- 90
            P  ++ P     + A +  +         I  R  GH   G ++      V +  L   
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 91  --LSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGV 148
                INV A  +            +      +             +  GG +S  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 149 MLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAIRGGGIGASFGVIVAWKVRLVP 207
              + G    N+++  +I  +G  +   + +  DLF A+ GG     FGVI   ++ + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGG--LGQFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.89
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.82
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 96.4
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.85
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.46
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 94.03
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.88
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.47
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.45
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.2e-37  Score=291.29  Aligned_cols=193  Identities=19%  Similarity=0.293  Sum_probs=167.2

Q ss_pred             CCCCceecCCCCChhhHhhhccccccCCCCCCCCccEEEecCCHHHHHHHHHHHHHC---CCcEEEEcCCCCCCCCCccc
Q 038259            3 SISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKH---GLQIRLRSGGHDFEGLSYVS   79 (501)
Q Consensus         3 ~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~---~~~~~v~ggGh~~~g~~~~~   79 (501)
                      +++|+|.+  |+.  ...   .+...|....+..|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...
T Consensus         3 ~~~g~v~t--d~~--~~~---~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~   75 (206)
T d1w1oa2           3 ALDGKLRT--DSN--ATA---AASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP   75 (206)
T ss_dssp             TTTTCEEC--SHH--HHH---HTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT
T ss_pred             cCCcEEEc--CHH--Hhh---hhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC
Confidence            45677765  222  111   134457777788999999999999999999999997   68999999999999887765


Q ss_pred             CCCEEEEEccCCCCe------EEcCCCCEEEEcCCCcHHHHHHHHHHhCCCceec-cCCCCcccccccccCCCCCCcccc
Q 038259           80 QVPFVVIDLLNLSEI------NVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFP-AGLCPTVGAGGHISGGGYGVMLRK  152 (501)
Q Consensus        80 ~~~~vvIdl~~l~~i------~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~g~~~~~  152 (501)
                      +  +++|||++||+|      ++|++..+++||||+++.+|.++|.++|+  .++ .+....++|||++++||+|..+++
T Consensus        76 ~--~ividl~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~  151 (206)
T d1w1oa2          76 G--GVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFR  151 (206)
T ss_dssp             T--SEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHH
T ss_pred             C--CEeeeccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceecccc
Confidence            4  899999999985      69999999999999999999999999874  433 455667889999999999999999


Q ss_pred             cccccccEeEEEEEecCCcEEe-ccCCCcchHHHhhccccCCceEEEEEEEEEEEec
Q 038259          153 FGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPV  208 (501)
Q Consensus       153 ~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~  208 (501)
                      ||..+|+|+++|+|++||++++ ++.+|+||||++||++  |+|||||++|||++|+
T Consensus       152 ~G~~~d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~--G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         152 HGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGL--GQFGVITRARIAVEPA  206 (206)
T ss_dssp             HCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCT--TCSEEEEEEEEEEEEC
T ss_pred             ccceeeeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCC--CccEeEEEEEEEEEcC
Confidence            9999999999999999999997 6677899999999999  9999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure