Citrus Sinensis ID: 038267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
cccEEEEEEEEEEEEEEcccccccccccccEEEEcEEEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEEEccccEEEEEEEccccccccccccEEEEccEEccEEEEEEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccEEEEEEEEEHHcccHHHHHHccccccccccccEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccc
ccccEEEEEccEEEEEEEcccccEEEEcccEEEccEEEEEEEEcccEEEEEEccccccccccccHHHHHHEHHccccccEEEEEEEEEcccccccccccccccccccccEEEEHHHccccccccccccEEEEEEcccEEcccccHHHHHHHHHHHHcccccEEEEEEcccEEHHHHHHHHcccHHHHHHHcccccHccccEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccc
MADSRVETISRLAQWRidnfgpcsykksdpfkigiWNWHLSVEKNRYLYVRlfpepsrlskeqppfARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLelkiyplnggdassvwpsdgmmqsvSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLsasspvfqsmfhhdlkekesstiyiEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
MADSRVETISRlaqwridnfgpcsyKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEpsrlskeqppfARFIIRvsngganrrLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
********ISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPE*********PFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPS******VSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLK**ESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIY*
*ADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSN*****************RTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSV**************TLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHH*L****S*TIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKI**
********ISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
***SRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKI**
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MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q9XHZ8326 BTB/POZ domain-containing yes no 1.0 0.904 0.779 1e-141
Q680K8329 BTB/POZ domain-containing no no 0.996 0.893 0.531 9e-88
Q94420395 Protein maternal effect l yes no 0.494 0.369 0.367 4e-18
Q717B3365 TD and POZ domain-contain yes no 0.461 0.372 0.309 8e-13
Q5BL35392 Speckle-type POZ protein- yes no 0.430 0.323 0.320 1e-12
P34371410 BTB and MATH domain-conta no no 0.454 0.326 0.308 3e-12
Q717B2364 TD and POZ domain-contain no no 0.461 0.373 0.294 5e-12
O22286408 BTB/POZ and MATH domain-c no no 0.464 0.335 0.324 5e-12
Q6IQ16392 Speckle-type POZ protein- yes no 0.389 0.293 0.344 6e-12
Q6YCH1340 TD and POZ domain-contain no no 0.461 0.4 0.294 7e-12
>sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1 Back     alignment and function desciption
 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 262/295 (88%)

Query: 1   MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLS 60
           M D++VETISRLAQWRI+NFGPCS+KKSDPFK+GIWNWHLS+E+NRYL VRLFPE SR+S
Sbjct: 1   MGDTKVETISRLAQWRIENFGPCSFKKSDPFKVGIWNWHLSIERNRYLSVRLFPELSRVS 60

Query: 61  KEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELK 120
           KEQPP A+F++RVSN G NRR YIS V E+LLRT +D VW+VD + HGRF +DVEFL+LK
Sbjct: 61  KEQPPVAKFVLRVSNVGPNRRFYISPVYEKLLRTTDDCVWHVDSSFHGRFTIDVEFLDLK 120

Query: 121 IYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLS 180
           I P+NGG+AS VWP+D  MQS+S Q+TL+CL+RML+E IL D +IHTADGTL AHKA+LS
Sbjct: 121 ICPVNGGEASPVWPTDATMQSISTQTTLKCLSRMLEESILTDVIIHTADGTLSAHKAILS 180

Query: 181 ASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAAN 240
           ASS VF+SMFHHDL EKESSTI+I+DMS ESCMALLSYLYG I QE+FWKHRLALLGAAN
Sbjct: 181 ASSTVFKSMFHHDLMEKESSTIHIDDMSRESCMALLSYLYGNITQEEFWKHRLALLGAAN 240

Query: 241 KYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD 295
           KYDI DLK ACEESL+EDINS NVLERLQEAWLYQL KLKKGCL YLFDFGKIYD
Sbjct: 241 KYDITDLKAACEESLMEDINSSNVLERLQEAWLYQLEKLKKGCLMYLFDFGKIYD 295
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1 Back     alignment and function description
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2 Back     alignment and function description
>sp|Q717B3|TDPZ1_MOUSE TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1 PE=2 SV=2 Back     alignment and function description
>sp|Q5BL35|SPOLA_DANRE Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1 Back     alignment and function description
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans GN=bath-42 PE=1 SV=1 Back     alignment and function description
>sp|Q717B2|TDPZ2_MOUSE TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=2 Back     alignment and function description
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1 Back     alignment and function description
>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1 Back     alignment and function description
>sp|Q6YCH1|TDPZ5_MOUSE TD and POZ domain-containing protein 5 OS=Mus musculus GN=Tdpoz5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
255545384326 protein with unknown function [Ricinus c 1.0 0.904 0.871 1e-153
225459573326 PREDICTED: BTB/POZ domain-containing pro 1.0 0.904 0.823 1e-146
224084888325 predicted protein [Populus trichocarpa] 1.0 0.907 0.804 1e-142
297845166326 BTB/POZ domain-containing protein [Arabi 1.0 0.904 0.783 1e-139
15219092326 BTB/POZ domain-containing protein [Arabi 1.0 0.904 0.779 1e-139
449519725326 PREDICTED: BTB/POZ domain-containing pro 1.0 0.904 0.762 1e-136
449465445326 PREDICTED: BTB/POZ domain-containing pro 1.0 0.904 0.762 1e-136
224063074316 predicted protein [Populus trichocarpa] 0.966 0.901 0.789 1e-136
388516587327 unknown [Lotus japonicus] 1.0 0.902 0.755 1e-133
356552683324 PREDICTED: BTB/POZ domain-containing pro 0.996 0.907 0.746 1e-130
>gi|255545384|ref|XP_002513752.1| protein with unknown function [Ricinus communis] gi|223546838|gb|EEF48335.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/295 (87%), Positives = 276/295 (93%)

Query: 1   MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLS 60
           MADS+VETISRLAQWRIDNFGPCSYKKSDPFK+GIWNWHLSVEKNRYLYVRLFPEPSR S
Sbjct: 1   MADSKVETISRLAQWRIDNFGPCSYKKSDPFKVGIWNWHLSVEKNRYLYVRLFPEPSRAS 60

Query: 61  KEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELK 120
           KEQPP ARF++RVSN GANRR YIS V+ERLLR C+DFVW VD T HGRFI+DVEFL++K
Sbjct: 61  KEQPPIARFVLRVSNAGANRRPYISPVHERLLRNCDDFVWPVDSTFHGRFIIDVEFLDIK 120

Query: 121 IYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLS 180
           I  LNG +ASS+WPSDGMMQ+VS QSTLRCL+RMLDE I AD  IHTADG L+AHKA+LS
Sbjct: 121 ICALNGVEASSIWPSDGMMQTVSTQSTLRCLSRMLDEAIHADLTIHTADGILRAHKAILS 180

Query: 181 ASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAAN 240
           ASSPVFQSMFHH+LKEKESSTIYIEDMS+ESCM+LLSYLYGTIKQEDFWKHRLALLGAAN
Sbjct: 181 ASSPVFQSMFHHNLKEKESSTIYIEDMSMESCMSLLSYLYGTIKQEDFWKHRLALLGAAN 240

Query: 241 KYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD 295
           KYDI+DLKDACEESLLEDINSGNVLERLQEAWLYQL KLKKGCLTYLFDFGKIYD
Sbjct: 241 KYDISDLKDACEESLLEDINSGNVLERLQEAWLYQLDKLKKGCLTYLFDFGKIYD 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459573|ref|XP_002285860.1| PREDICTED: BTB/POZ domain-containing protein At1g21780 [Vitis vinifera] gi|302141809|emb|CBI19012.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084888|ref|XP_002307437.1| predicted protein [Populus trichocarpa] gi|222856886|gb|EEE94433.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297845166|ref|XP_002890464.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336306|gb|EFH66723.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219092|ref|NP_173597.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|145323970|ref|NP_001077574.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75315299|sp|Q9XHZ8.1|Y1178_ARATH RecName: Full=BTB/POZ domain-containing protein At1g21780 gi|5263330|gb|AAD41432.1|AC007727_21 Contains similarity to gb|AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF|00651 BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221, gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come from this gene [Arabidopsis thaliana] gi|21593141|gb|AAM65090.1| unknown [Arabidopsis thaliana] gi|89000935|gb|ABD59057.1| At1g21780 [Arabidopsis thaliana] gi|332192034|gb|AEE30155.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|332192035|gb|AEE30156.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449519725|ref|XP_004166885.1| PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465445|ref|XP_004150438.1| PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224063074|ref|XP_002300983.1| predicted protein [Populus trichocarpa] gi|222842709|gb|EEE80256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388516587|gb|AFK46355.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356552683|ref|XP_003544692.1| PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2036962326 AT1G21780 [Arabidopsis thalian 1.0 0.904 0.779 9.6e-128
TAIR|locus:2020522329 AT1G55760 "AT1G55760" [Arabido 0.996 0.893 0.531 6.6e-81
WB|WBGene00003209395 mel-26 [Caenorhabditis elegans 0.491 0.367 0.369 2.2e-20
UNIPROTKB|Q94420395 mel-26 "Protein maternal effec 0.491 0.367 0.369 2.2e-20
UNIPROTKB|P34371410 bath-42 "BTB and MATH domain-c 0.454 0.326 0.308 1.7e-12
ZFIN|ZDB-GENE-050320-3394 spopla "speckle-type POZ prote 0.423 0.317 0.325 2.3e-12
UNIPROTKB|Q6IQ16392 SPOPL "Speckle-type POZ protei 0.386 0.290 0.347 1.5e-11
UNIPROTKB|Q6GR09392 spopl "Speckle-type POZ protei 0.383 0.288 0.362 1.5e-11
MGI|MGI:3027904370 Tdpoz4 "TD and POZ domain cont 0.461 0.367 0.287 2.1e-11
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.494 0.390 0.303 2.1e-11
TAIR|locus:2036962 AT1G21780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 230/295 (77%), Positives = 262/295 (88%)

Query:     1 MADSRVETISRLAQWRIDNFGPCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLS 60
             M D++VETISRLAQWRI+NFGPCS+KKSDPFK+GIWNWHLS+E+NRYL VRLFPE SR+S
Sbjct:     1 MGDTKVETISRLAQWRIENFGPCSFKKSDPFKVGIWNWHLSIERNRYLSVRLFPELSRVS 60

Query:    61 KEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLELK 120
             KEQPP A+F++RVSN G NRR YIS V E+LLRT +D VW+VD + HGRF +DVEFL+LK
Sbjct:    61 KEQPPVAKFVLRVSNVGPNRRFYISPVYEKLLRTTDDCVWHVDSSFHGRFTIDVEFLDLK 120

Query:   121 IYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLS 180
             I P+NGG+AS VWP+D  MQS+S Q+TL+CL+RML+E IL D +IHTADGTL AHKA+LS
Sbjct:   121 ICPVNGGEASPVWPTDATMQSISTQTTLKCLSRMLEESILTDVIIHTADGTLSAHKAILS 180

Query:   181 ASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAAN 240
             ASS VF+SMFHHDL EKESSTI+I+DMS ESCMALLSYLYG I QE+FWKHRLALLGAAN
Sbjct:   181 ASSTVFKSMFHHDLMEKESSTIHIDDMSRESCMALLSYLYGNITQEEFWKHRLALLGAAN 240

Query:   241 KYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFDFGKIYD 295
             KYDI DLK ACEESL+EDINS NVLERLQEAWLYQL KLKKGCL YLFDFGKIYD
Sbjct:   241 KYDITDLKAACEESLMEDINSSNVLERLQEAWLYQLEKLKKGCLMYLFDFGKIYD 295
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IPI
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
TAIR|locus:2020522 AT1G55760 "AT1G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00003209 mel-26 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q94420 mel-26 "Protein maternal effect lethal 26" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34371 bath-42 "BTB and MATH domain-containing protein 42" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IQ16 SPOPL "Speckle-type POZ protein-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GR09 spopl "Speckle-type POZ protein-like" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:3027904 Tdpoz4 "TD and POZ domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XHZ8Y1178_ARATHNo assigned EC number0.77961.00.9049yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015398001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (326 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-19
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-18
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 7e-06
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 0.001
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 81.1 bits (201), Expect = 2e-19
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 154 MLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCM 213
           + + G L D  +   D    AHKAVL+A SP F+++F  + +      I +ED+S E   
Sbjct: 4   LRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKE----VEITLEDVSPEDFE 59

Query: 214 ALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLL 256
           ALL ++Y T K E   ++   LL  A+K  I  L D CEE L+
Sbjct: 60  ALLEFIY-TGKLEITEENVDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PHA02713 557 hypothetical protein; Provisional 99.95
PHA02790 480 Kelch-like protein; Provisional 99.94
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA03098 534 kelch-like protein; Provisional 99.92
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.91
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.82
KOG4591280 consensus Uncharacterized conserved protein, conta 99.79
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.78
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.77
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.76
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.75
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.7
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.69
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.67
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.65
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.65
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.63
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.63
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.62
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.58
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.56
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.54
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.53
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.51
smart0006195 MATH meprin and TRAF homology. 99.44
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.34
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.22
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.04
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.9
KOG0511516 consensus Ankyrin repeat protein [General function 98.42
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 98.31
KOG2838401 consensus Uncharacterized conserved protein, conta 98.27
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.24
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.19
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.98
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 97.84
KOG3473112 consensus RNA polymerase II transcription elongati 97.64
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.8
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.77
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 96.67
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.53
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 95.98
KOG0511 516 consensus Ankyrin repeat protein [General function 95.85
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.54
KOG1778 319 consensus CREB binding protein/P300 and related TA 94.64
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 93.48
KOG2715210 consensus Uncharacterized conserved protein, conta 92.3
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 91.88
KOG2723221 consensus Uncharacterized conserved protein, conta 84.77
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 84.33
PF09593117 Pathogen_betaC1: Beta-satellite pathogenicity beta 81.75
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.95  E-value=4.8e-28  Score=227.29  Aligned_cols=151  Identities=19%  Similarity=0.323  Sum_probs=141.1

Q ss_pred             cCChHHHHHHHHHHhhcCCcccEEEEeC-CeEEEeEeeeeccCCHHHHHhhcCccCcCc-cceEEECCCCHHHHHHHHHH
Q 038267          141 SVSAQSTLRCLARMLDEGILADTVIHTA-DGTLKAHKAVLSASSPVFQSMFHHDLKEKE-SSTIYIEDMSVESCMALLSY  218 (295)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~~~Dv~l~v~-~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~~L~~  218 (295)
                      ..|+..+++.|.+|+.++.+|||+|.++ |++|+|||.|||++|+||++||.++|+|+. +++|.|+++++++|+.+|+|
T Consensus         6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y   85 (557)
T PHA02713          6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY   85 (557)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence            3567889999999999999999999998 899999999999999999999999999864 78999999999999999999


Q ss_pred             HhCCCcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267          219 LYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY  294 (295)
Q Consensus       219 lY~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~  294 (295)
                      +||+. ++.  +++++||.+|++|+++.|++.|++||.+.++++||+.++.+|..+.+..|.+.|.+||.+ |.+|.
T Consensus        86 ~Yt~~-i~~--~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~  159 (557)
T PHA02713         86 LYNRH-ISS--MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI  159 (557)
T ss_pred             hcCCC-CCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence            99874 444  899999999999999999999999999999999999999999999999999999999999 88764

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-12
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 4e-12
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 5e-07
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 12/158 (7%)
Query: 141 SVSAQSTLRCL----ARMLDE--GI-----LADTVIHTADGTLKAHKAVLSASSPVFQSM 189
           ++S Q+T+  +     R+ DE  G+       D  +  A    +AHKA+L+A SPVF +M
Sbjct: 144 NISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM 203
Query: 190 FHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKD 249
           F H+++E + + + I D+  E    ++ ++Y T K  +  K    LL AA+KY +  LK 
Sbjct: 204 FEHEMEESKKNRVEINDVEPEVFKEMMCFIY-TGKAPNLDKMADDLLAAADKYALERLKV 262
Query: 250 ACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYL 287
            CE++L  +++  N  E L  A L+   +LK   + ++
Sbjct: 263 MCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 4e-43
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-38
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 3e-37
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 1e-22
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-21
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 4e-20
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 2e-19
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 3e-19
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 8e-19
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-17
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-17
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 7e-17
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 8e-17
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 9e-17
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-16
3b84_A119 Zinc finger and BTB domain-containing protein 48; 5e-16
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 5e-15
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 7e-15
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 4e-14
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-11
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 8e-04
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  148 bits (376), Expect = 4e-43
 Identities = 72/297 (24%), Positives = 116/297 (39%), Gaps = 29/297 (9%)

Query: 14  QWRIDNFGPC-----SYKKSDPFKIG---IWNWHLSV-------EKNRYLYVRLFPEPSR 58
            W I+NF  C        KS  F  G      W L V       E   YL + L      
Sbjct: 10  MWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC- 68

Query: 59  LSKEQPPFARFIIRVSNGGANRRLYISQVNERLLRTCEDFVWYVDCTIHGRFIVDVEFLE 118
              +    A+F   + N  A      +  ++R  R  +   W     I   F++D     
Sbjct: 69  --PKSEVRAKFKFSILN--AKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGL 124

Query: 119 LK------IYPLNGGDASSVWPSDGMMQS--VSAQSTLRCLARMLDEGILADTVIHTADG 170
           L          ++    S        M    V        L  + +     D  +  A  
Sbjct: 125 LPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQ 184

Query: 171 TLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWK 230
             +AHKA+L+A SPVF +MF H+++E + + + I D+  E    ++ ++Y T K  +  K
Sbjct: 185 EFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY-TGKAPNLDK 243

Query: 231 HRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYL 287
               LL AA+KY +  LK  CE++L  +++  N  E L  A L+   +LK   + ++
Sbjct: 244 MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 300
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.98
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.93
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.93
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.92
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.92
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.92
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.92
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.92
2vpk_A116 Myoneurin; transcription regulation, transcription 99.92
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.92
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.91
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.91
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.9
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.9
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.88
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.88
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.81
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.78
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.75
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.74
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.73
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.7
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.69
1d00_A168 Tumor necrosis factor receptor associated protein 99.68
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.67
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.58
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.51
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.29
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.18
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.06
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.64
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.56
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.52
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.46
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.15
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 97.57
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.52
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 96.86
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.78
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.02
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 94.31
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.29
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 93.8
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 89.45
2vpk_A116 Myoneurin; transcription regulation, transcription 86.15
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 84.27
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 84.25
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 83.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 82.11
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 82.01
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 80.98
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 80.58
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=5.9e-52  Score=363.82  Aligned_cols=279  Identities=22%  Similarity=0.315  Sum_probs=223.2

Q ss_pred             cceeeeeEEEEEeecCC-----CCccccCCceecce---eeEEEEEeCCe-----eEEEEeecCCCCCCCCCceEEEEEE
Q 038267            6 VETISRLAQWRIDNFGP-----CSYKKSDPFKIGIW---NWHLSVEKNRY-----LYVRLFPEPSRLSKEQPPFARFIIR   72 (295)
Q Consensus         6 ~~~~~~~~~w~I~~~~~-----~~~~~S~~F~~gg~---~W~l~~yp~g~-----~~vsl~l~~~~~~~~~~v~a~f~~~   72 (295)
                      .++.+|+|+|+|+||+.     |+++.||+|.+||+   +|+|++||+|.     +++|+||.+.+ ..+|.+.|+|+++
T Consensus         2 s~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~-~~~~~v~a~~~~~   80 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS-CPKSEVRAKFKFS   80 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEE-CCC-CEEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcC-CCCCcEEEEEEEE
Confidence            35678999999999962     67899999999996   99999999983     48899887754 3479999999999


Q ss_pred             EEeCCCCCeeeeeeccceecccCCceeee-e-----------eeeeeceeEEEeeeeeeeee-cCCCCccCCCCCCCCCc
Q 038267           73 VSNGGANRRLYISQVNERLLRTCEDFVWY-V-----------DCTIHGRFIVDVEFLELKIY-PLNGGDASSVWPSDGMM  139 (295)
Q Consensus        73 l~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~-----------~~~~~~~l~ve~~v~~~~~~-~~~~~~~~~~~~~~~~~  139 (295)
                      |+|++|+..........+.|....+|||. +           +|++||+++|+|+|.+++-. .+.+.+       ....
T Consensus        81 l~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~-------~~~~  153 (312)
T 3hqi_A           81 ILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQN-------TMNM  153 (312)
T ss_dssp             EECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCC-------CCSS
T ss_pred             EEeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccc-------cccc
Confidence            99999876554332222334434454443 1           37889999999998776432 112211       1122


Q ss_pred             ccCChHHHHHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHH
Q 038267          140 QSVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYL  219 (295)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~l  219 (295)
                      ..+|++.+.+++..+++++.++||+|.++|++|+|||.|||++||||++||.+++.|+...+|.|+++++++|+.+|+|+
T Consensus       154 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~i  233 (312)
T 3hqi_A          154 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI  233 (312)
T ss_dssp             CCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhh
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC-CcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267          220 YGT-IKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY  294 (295)
Q Consensus       220 Y~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~  294 (295)
                      ||+ .....  +++.+||.+|++|+++.|+..|+++|.+.++.+|+..++.+|.+|++..|++.|++||.+ +.+|.
T Consensus       234 Yt~~~~~~~--~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~  308 (312)
T 3hqi_A          234 YTGKAPNLD--KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVL  308 (312)
T ss_dssp             HHSCCTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC----
T ss_pred             cCCCCCChH--HHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            975 44444  889999999999999999999999999999999999999999999999999999999999 77765
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 9e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 3e-15
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 9e-17
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 144 AQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIY 203
           A   L  L R+    IL D VI  +    +AHK VL A S +F S+F   LK   S    
Sbjct: 9   ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL 68

Query: 204 IEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESL 255
             +++ E    LL ++Y T +      + +A++  A    +  + D C + +
Sbjct: 69  DPEINPEGFNILLDFMY-TSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.93
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.92
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.76
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.7
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.68
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.67
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.91
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.78
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.14
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.99
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.75
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.01
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.84
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.62
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 91.99
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 85.48
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 85.05
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-26  Score=169.13  Aligned_cols=115  Identities=26%  Similarity=0.399  Sum_probs=105.8

Q ss_pred             cCChHHHHHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHh
Q 038267          141 SVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLY  220 (295)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY  220 (295)
                      +.|++.+++.|..+++++.+||++|.++|++|+|||.||+++||||++||.+++.++....+.+++++++.|+.+|+|+|
T Consensus         6 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Y   85 (122)
T d1r29a_           6 TRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMY   85 (122)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhc
Confidence            35678899999999999999999999999999999999999999999999999998888788889999999999999999


Q ss_pred             CC-CcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 038267          221 GT-IKQEDFWKHRLALLGAANKYDIADLKDACEESLLE  257 (295)
Q Consensus       221 ~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  257 (295)
                      |+ +.++.  +++.+++.+|++|+++.|++.|+++|..
T Consensus        86 tg~~~i~~--~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          86 TSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HSCCCCCT--TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCeecCch--hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            64 55555  7899999999999999999999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure